Multiple sequence alignment - TraesCS6A01G076100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G076100 chr6A 100.000 2824 0 0 1 2824 46613538 46610715 0.000000e+00 5216.0
1 TraesCS6A01G076100 chr6A 79.762 168 31 1 1208 1375 119763710 119763874 4.940000e-23 119.0
2 TraesCS6A01G076100 chr6A 90.698 43 2 2 1912 1953 460643393 460643434 3.930000e-04 56.5
3 TraesCS6A01G076100 chr6B 90.215 930 56 8 833 1752 80024759 80025663 0.000000e+00 1181.0
4 TraesCS6A01G076100 chr6B 90.691 752 52 10 1 746 80023915 80024654 0.000000e+00 985.0
5 TraesCS6A01G076100 chr6B 90.293 752 55 10 1 746 79970400 79971139 0.000000e+00 968.0
6 TraesCS6A01G076100 chr6B 88.305 419 15 9 833 1241 79971244 79971638 3.290000e-129 472.0
7 TraesCS6A01G076100 chr6B 83.979 387 25 15 2242 2602 80040444 80040819 1.250000e-88 337.0
8 TraesCS6A01G076100 chr6B 96.581 117 4 0 2627 2743 80044633 80044749 7.980000e-46 195.0
9 TraesCS6A01G076100 chr6B 82.550 149 8 7 1985 2129 80025691 80025825 6.390000e-22 115.0
10 TraesCS6A01G076100 chrUn 90.357 757 48 17 1152 1894 27572474 27571729 0.000000e+00 970.0
11 TraesCS6A01G076100 chrUn 90.875 526 38 4 1 525 27577327 27576811 0.000000e+00 697.0
12 TraesCS6A01G076100 chrUn 89.865 296 12 8 857 1142 27573129 27572842 5.750000e-97 364.0
13 TraesCS6A01G076100 chrUn 86.905 336 21 8 544 872 27576727 27576408 3.460000e-94 355.0
14 TraesCS6A01G076100 chr4A 89.904 208 21 0 366 573 473477893 473477686 4.640000e-68 268.0
15 TraesCS6A01G076100 chr4A 94.737 38 2 0 1926 1963 498135531 498135494 3.040000e-05 60.2
16 TraesCS6A01G076100 chr4D 91.925 161 13 0 441 601 404108582 404108742 2.830000e-55 226.0
17 TraesCS6A01G076100 chr1A 91.875 160 13 0 442 601 393948459 393948618 1.020000e-54 224.0
18 TraesCS6A01G076100 chr1A 93.407 91 6 0 2734 2824 366288205 366288295 4.910000e-28 135.0
19 TraesCS6A01G076100 chr6D 91.358 162 14 0 441 602 452949634 452949795 3.660000e-54 222.0
20 TraesCS6A01G076100 chr6D 88.764 178 17 2 427 601 392896962 392897139 6.130000e-52 215.0
21 TraesCS6A01G076100 chr6D 79.412 204 40 2 1177 1378 9123662 9123459 2.930000e-30 143.0
22 TraesCS6A01G076100 chr6D 90.141 71 4 2 1786 1853 54896983 54896913 3.870000e-14 89.8
23 TraesCS6A01G076100 chr6D 100.000 28 0 0 1233 1260 99800703 99800730 5.000000e-03 52.8
24 TraesCS6A01G076100 chr5B 90.419 167 16 0 441 607 157026207 157026373 1.320000e-53 220.0
25 TraesCS6A01G076100 chr5B 95.604 91 4 0 2734 2824 416714212 416714122 2.270000e-31 147.0
26 TraesCS6A01G076100 chr3B 94.505 91 5 0 2734 2824 44751051 44750961 1.050000e-29 141.0
27 TraesCS6A01G076100 chr7D 94.444 90 5 0 2735 2824 596233539 596233628 3.790000e-29 139.0
28 TraesCS6A01G076100 chr7D 92.857 42 3 0 1924 1965 619038338 619038297 8.450000e-06 62.1
29 TraesCS6A01G076100 chr5D 93.407 91 6 0 2734 2824 495161381 495161471 4.910000e-28 135.0
30 TraesCS6A01G076100 chr5D 91.667 96 7 1 2730 2824 118059211 118059306 6.350000e-27 132.0
31 TraesCS6A01G076100 chr5D 77.209 215 44 4 1166 1379 368249936 368250146 1.370000e-23 121.0
32 TraesCS6A01G076100 chr5A 90.385 104 6 3 2724 2824 624790772 624790874 1.760000e-27 134.0
33 TraesCS6A01G076100 chr5A 77.251 211 43 4 1166 1375 470121478 470121684 4.940000e-23 119.0
34 TraesCS6A01G076100 chr3A 92.473 93 7 0 2732 2824 658636881 658636789 1.760000e-27 134.0
35 TraesCS6A01G076100 chr3A 90.909 44 3 1 1924 1967 376782156 376782114 1.090000e-04 58.4
36 TraesCS6A01G076100 chr1B 90.816 98 7 2 2729 2824 509151053 509151150 2.280000e-26 130.0
37 TraesCS6A01G076100 chr2D 100.000 34 0 0 1924 1957 35791113 35791146 2.350000e-06 63.9
38 TraesCS6A01G076100 chr1D 94.872 39 0 2 1924 1960 427487163 427487125 3.040000e-05 60.2
39 TraesCS6A01G076100 chr1D 94.737 38 1 1 1924 1961 206041037 206041073 1.090000e-04 58.4
40 TraesCS6A01G076100 chr3D 94.737 38 1 1 1924 1961 278515001 278515037 1.090000e-04 58.4
41 TraesCS6A01G076100 chr2A 89.583 48 2 2 1924 1968 703998903 703998950 1.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G076100 chr6A 46610715 46613538 2823 True 5216.000000 5216 100.000000 1 2824 1 chr6A.!!$R1 2823
1 TraesCS6A01G076100 chr6B 80023915 80025825 1910 False 760.333333 1181 87.818667 1 2129 3 chr6B.!!$F2 2128
2 TraesCS6A01G076100 chr6B 79970400 79971638 1238 False 720.000000 968 89.299000 1 1241 2 chr6B.!!$F1 1240
3 TraesCS6A01G076100 chr6B 80040444 80044749 4305 False 266.000000 337 90.280000 2242 2743 2 chr6B.!!$F3 501
4 TraesCS6A01G076100 chrUn 27571729 27577327 5598 True 596.500000 970 89.500500 1 1894 4 chrUn.!!$R1 1893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 409 0.035152 CTACCTGTTGCCATGGAGCA 60.035 55.0 18.4 9.49 42.17 4.26 F
1000 4424 0.706433 TGTAGTCGGTCTAACCCCCT 59.294 55.0 0.0 0.00 33.75 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1407 5192 0.099082 GTGGTCTCGTGGATCTCGAC 59.901 60.0 8.84 3.07 33.71 4.20 R
2177 5979 0.250727 GAAACCTACCTGCAGCCACA 60.251 55.0 8.66 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.122768 AGGGTGGATGGAGATGAACTC 58.877 52.381 0.00 0.00 44.24 3.01
83 84 1.313091 GGTGCGGGAATGGTTCTTCC 61.313 60.000 0.00 0.00 43.39 3.46
91 92 3.954258 GGGAATGGTTCTTCCGAATGATT 59.046 43.478 0.00 0.00 44.79 2.57
138 140 3.614616 CAGACAACTATTCTCTTGCCGAC 59.385 47.826 0.00 0.00 0.00 4.79
220 222 7.470981 GCATTGTGATTCTCCATTTATCATGGT 60.471 37.037 0.82 0.00 40.06 3.55
265 267 0.684535 TTGATCCAAGCTCGTGACCA 59.315 50.000 0.00 0.00 0.00 4.02
275 277 1.134995 GCTCGTGACCATGACAGATCA 60.135 52.381 0.00 0.00 39.83 2.92
285 291 3.986572 CCATGACAGATCAATCTACGCTC 59.013 47.826 0.00 0.00 38.69 5.03
341 347 4.270084 CGTGAATGAGCCTAGCGAATTTTA 59.730 41.667 0.00 0.00 0.00 1.52
403 409 0.035152 CTACCTGTTGCCATGGAGCA 60.035 55.000 18.40 9.49 42.17 4.26
430 436 7.128976 GCTTTAGCTGATTGTATTCTTACTGC 58.871 38.462 0.00 0.00 38.21 4.40
437 443 6.472016 TGATTGTATTCTTACTGCCACTGAA 58.528 36.000 0.00 0.00 0.00 3.02
469 475 9.374838 TCCGTTCCTAAATATTTGTCTTTCTAC 57.625 33.333 11.05 0.00 0.00 2.59
483 489 6.873997 TGTCTTTCTACAGACTTTGACAAGA 58.126 36.000 2.70 0.00 43.32 3.02
494 500 7.542477 ACAGACTTTGACAAGAGATTACATACG 59.458 37.037 4.92 0.00 33.72 3.06
531 569 7.819900 AGTGAATCTACACTCTAAAACATGTCC 59.180 37.037 0.00 0.00 46.36 4.02
549 620 5.476091 TGTCCATATACAACTGTGTGTGA 57.524 39.130 5.16 0.00 38.82 3.58
552 623 7.039270 TGTCCATATACAACTGTGTGTGATAC 58.961 38.462 5.16 4.30 38.82 2.24
680 760 3.834435 CGTTTCCCGCAAAAGAAAAAG 57.166 42.857 0.00 0.00 33.98 2.27
681 761 2.538037 CGTTTCCCGCAAAAGAAAAAGG 59.462 45.455 0.00 0.00 33.98 3.11
693 773 3.134574 AGAAAAAGGACGTGCCATGTA 57.865 42.857 2.38 0.00 40.02 2.29
694 774 3.482436 AGAAAAAGGACGTGCCATGTAA 58.518 40.909 2.38 0.00 40.02 2.41
801 915 2.961522 AAACATCGCCAACGTAACAG 57.038 45.000 0.00 0.00 41.18 3.16
807 921 0.938713 CGCCAACGTAACAGAAACCA 59.061 50.000 0.00 0.00 33.53 3.67
818 932 5.392165 CGTAACAGAAACCACAAACAAGGAA 60.392 40.000 0.00 0.00 0.00 3.36
819 933 5.476091 AACAGAAACCACAAACAAGGAAA 57.524 34.783 0.00 0.00 0.00 3.13
820 934 4.816392 ACAGAAACCACAAACAAGGAAAC 58.184 39.130 0.00 0.00 0.00 2.78
822 936 3.508402 AGAAACCACAAACAAGGAAACGT 59.492 39.130 0.00 0.00 0.00 3.99
824 938 5.358725 AGAAACCACAAACAAGGAAACGTAT 59.641 36.000 0.00 0.00 0.00 3.06
826 940 4.200874 ACCACAAACAAGGAAACGTATGA 58.799 39.130 0.00 0.00 0.00 2.15
827 941 4.825085 ACCACAAACAAGGAAACGTATGAT 59.175 37.500 0.00 0.00 0.00 2.45
828 942 5.048991 ACCACAAACAAGGAAACGTATGATC 60.049 40.000 0.00 0.00 0.00 2.92
829 943 5.049060 CCACAAACAAGGAAACGTATGATCA 60.049 40.000 0.00 0.00 0.00 2.92
830 944 6.434596 CACAAACAAGGAAACGTATGATCAA 58.565 36.000 0.00 0.00 0.00 2.57
831 945 7.083858 CACAAACAAGGAAACGTATGATCAAT 58.916 34.615 0.00 0.00 0.00 2.57
913 4333 6.101881 CCAAGTAGGAGAGGGGAAAATATTCT 59.898 42.308 0.00 0.00 41.22 2.40
914 4334 7.220740 CAAGTAGGAGAGGGGAAAATATTCTC 58.779 42.308 0.00 0.00 35.12 2.87
915 4335 4.965200 AGGAGAGGGGAAAATATTCTCG 57.035 45.455 0.00 0.00 36.87 4.04
916 4336 4.557705 AGGAGAGGGGAAAATATTCTCGA 58.442 43.478 0.00 0.00 36.87 4.04
988 4408 6.760161 TCGGCGTATATATCTATGTAGTCG 57.240 41.667 6.85 0.00 0.00 4.18
1000 4424 0.706433 TGTAGTCGGTCTAACCCCCT 59.294 55.000 0.00 0.00 33.75 4.79
1080 4505 1.219124 CTCTCCACCATGTCCCACG 59.781 63.158 0.00 0.00 0.00 4.94
1143 4570 1.167851 CTGCAATTGGGTCGTGACAT 58.832 50.000 7.72 0.00 0.00 3.06
1361 5146 4.482684 TCCGAGCTCAGCTTCGCG 62.483 66.667 15.40 0.00 39.88 5.87
1667 5452 1.968540 GCTTGTGCTGGACAGGGTC 60.969 63.158 12.95 0.00 35.44 4.46
1682 5467 1.003839 GGTCATCAAGTGCCACCGA 60.004 57.895 0.00 0.00 0.00 4.69
1735 5524 1.002624 GGGTTTCGTCCTGGCATGA 60.003 57.895 0.00 0.00 0.00 3.07
1736 5525 1.305930 GGGTTTCGTCCTGGCATGAC 61.306 60.000 12.29 12.29 0.00 3.06
1770 5560 7.209471 AGTATACTAGTAGTGCAGATGCTTC 57.791 40.000 13.29 0.00 42.66 3.86
1795 5593 3.359695 TTTACCACCCTATGTTGCTCC 57.640 47.619 0.00 0.00 0.00 4.70
1797 5595 2.263895 ACCACCCTATGTTGCTCCTA 57.736 50.000 0.00 0.00 0.00 2.94
1809 5607 7.933577 CCTATGTTGCTCCTATGAACAGATAAA 59.066 37.037 0.00 0.00 33.29 1.40
1824 5622 5.118990 ACAGATAAAAGATGGACATGTCGG 58.881 41.667 19.33 0.00 0.00 4.79
1842 5640 5.195185 TGTCGGGTGATGTGTAGTTATCTA 58.805 41.667 0.00 0.00 0.00 1.98
1843 5641 5.831525 TGTCGGGTGATGTGTAGTTATCTAT 59.168 40.000 0.00 0.00 0.00 1.98
1844 5642 6.016527 TGTCGGGTGATGTGTAGTTATCTATC 60.017 42.308 0.00 0.00 0.00 2.08
1845 5643 6.207025 GTCGGGTGATGTGTAGTTATCTATCT 59.793 42.308 0.00 0.00 0.00 1.98
1846 5644 7.389884 GTCGGGTGATGTGTAGTTATCTATCTA 59.610 40.741 0.00 0.00 0.00 1.98
1847 5645 7.606839 TCGGGTGATGTGTAGTTATCTATCTAG 59.393 40.741 0.00 0.00 0.00 2.43
1849 5647 9.736414 GGGTGATGTGTAGTTATCTATCTAGTA 57.264 37.037 0.00 0.00 0.00 1.82
1869 5667 9.320295 TCTAGTAGTATAACTAGTACTCCCTCC 57.680 40.741 0.00 0.00 46.07 4.30
1870 5668 9.325248 CTAGTAGTATAACTAGTACTCCCTCCT 57.675 40.741 0.00 0.00 41.27 3.69
1872 5670 9.325248 AGTAGTATAACTAGTACTCCCTCCTAG 57.675 40.741 0.00 0.00 39.02 3.02
1873 5671 7.019656 AGTATAACTAGTACTCCCTCCTAGC 57.980 44.000 0.00 0.00 33.09 3.42
1877 5675 5.571791 ACTAGTACTCCCTCCTAGCTAAG 57.428 47.826 0.00 0.00 33.09 2.18
1894 5692 4.461781 AGCTAAGCTTGATTCAATGCTGTT 59.538 37.500 9.86 10.14 33.89 3.16
1895 5693 4.797349 GCTAAGCTTGATTCAATGCTGTTC 59.203 41.667 9.86 10.06 31.86 3.18
1896 5694 3.863142 AGCTTGATTCAATGCTGTTCC 57.137 42.857 17.11 0.00 30.91 3.62
1897 5695 3.428532 AGCTTGATTCAATGCTGTTCCT 58.571 40.909 17.11 0.16 30.91 3.36
1898 5696 4.592942 AGCTTGATTCAATGCTGTTCCTA 58.407 39.130 17.11 0.00 30.91 2.94
1899 5697 5.198965 AGCTTGATTCAATGCTGTTCCTAT 58.801 37.500 17.11 0.00 30.91 2.57
1900 5698 5.067413 AGCTTGATTCAATGCTGTTCCTATG 59.933 40.000 17.11 0.00 30.91 2.23
1901 5699 5.735354 GCTTGATTCAATGCTGTTCCTATGG 60.735 44.000 0.00 0.00 0.00 2.74
1902 5700 3.633525 TGATTCAATGCTGTTCCTATGGC 59.366 43.478 0.00 0.00 0.00 4.40
1903 5701 2.804986 TCAATGCTGTTCCTATGGCA 57.195 45.000 0.00 0.00 39.06 4.92
1904 5702 2.646930 TCAATGCTGTTCCTATGGCAG 58.353 47.619 0.00 0.00 38.11 4.85
1926 5724 5.452302 CAGCATGCAGTTTAATACTTTACGC 59.548 40.000 21.98 0.00 33.85 4.42
1927 5725 5.354234 AGCATGCAGTTTAATACTTTACGCT 59.646 36.000 21.98 0.00 33.85 5.07
1928 5726 5.677178 GCATGCAGTTTAATACTTTACGCTC 59.323 40.000 14.21 0.00 33.85 5.03
1929 5727 6.456988 GCATGCAGTTTAATACTTTACGCTCT 60.457 38.462 14.21 0.00 33.85 4.09
1930 5728 7.464358 CATGCAGTTTAATACTTTACGCTCTT 58.536 34.615 0.00 0.00 33.85 2.85
1931 5729 8.600625 CATGCAGTTTAATACTTTACGCTCTTA 58.399 33.333 0.00 0.00 33.85 2.10
1932 5730 8.712285 TGCAGTTTAATACTTTACGCTCTTAT 57.288 30.769 0.00 0.00 33.85 1.73
1933 5731 9.806203 TGCAGTTTAATACTTTACGCTCTTATA 57.194 29.630 0.00 0.00 33.85 0.98
1944 5742 9.793252 ACTTTACGCTCTTATATTTCTTTACGA 57.207 29.630 0.00 0.00 0.00 3.43
1947 5745 7.695869 ACGCTCTTATATTTCTTTACGAAGG 57.304 36.000 0.00 0.00 33.56 3.46
1948 5746 6.700520 ACGCTCTTATATTTCTTTACGAAGGG 59.299 38.462 0.00 0.00 33.56 3.95
1949 5747 6.921857 CGCTCTTATATTTCTTTACGAAGGGA 59.078 38.462 0.00 0.00 33.56 4.20
1950 5748 7.115095 CGCTCTTATATTTCTTTACGAAGGGAG 59.885 40.741 0.00 0.00 33.56 4.30
1951 5749 7.927092 GCTCTTATATTTCTTTACGAAGGGAGT 59.073 37.037 0.00 0.00 33.56 3.85
1959 5757 9.712305 ATTTCTTTACGAAGGGAGTATATGATG 57.288 33.333 0.00 0.00 33.56 3.07
1960 5758 7.834881 TCTTTACGAAGGGAGTATATGATGT 57.165 36.000 0.00 0.00 33.56 3.06
1961 5759 7.658261 TCTTTACGAAGGGAGTATATGATGTG 58.342 38.462 0.00 0.00 33.56 3.21
1962 5760 7.504574 TCTTTACGAAGGGAGTATATGATGTGA 59.495 37.037 0.00 0.00 33.56 3.58
1963 5761 7.591421 TTACGAAGGGAGTATATGATGTGAA 57.409 36.000 0.00 0.00 0.00 3.18
1964 5762 6.479972 ACGAAGGGAGTATATGATGTGAAA 57.520 37.500 0.00 0.00 0.00 2.69
1965 5763 7.067496 ACGAAGGGAGTATATGATGTGAAAT 57.933 36.000 0.00 0.00 0.00 2.17
1966 5764 8.190326 ACGAAGGGAGTATATGATGTGAAATA 57.810 34.615 0.00 0.00 0.00 1.40
1967 5765 8.088981 ACGAAGGGAGTATATGATGTGAAATAC 58.911 37.037 0.00 0.00 0.00 1.89
1968 5766 7.273598 CGAAGGGAGTATATGATGTGAAATACG 59.726 40.741 0.00 0.00 31.54 3.06
1969 5767 6.398918 AGGGAGTATATGATGTGAAATACGC 58.601 40.000 0.00 0.00 31.54 4.42
1970 5768 6.211584 AGGGAGTATATGATGTGAAATACGCT 59.788 38.462 0.00 0.00 31.54 5.07
1971 5769 6.531948 GGGAGTATATGATGTGAAATACGCTC 59.468 42.308 0.00 0.00 31.54 5.03
1972 5770 7.316640 GGAGTATATGATGTGAAATACGCTCT 58.683 38.462 0.00 0.00 31.54 4.09
1973 5771 7.274468 GGAGTATATGATGTGAAATACGCTCTG 59.726 40.741 0.00 0.00 31.54 3.35
1974 5772 7.886338 AGTATATGATGTGAAATACGCTCTGA 58.114 34.615 0.00 0.00 31.54 3.27
1975 5773 8.526978 AGTATATGATGTGAAATACGCTCTGAT 58.473 33.333 0.00 0.00 31.54 2.90
1976 5774 5.919272 ATGATGTGAAATACGCTCTGATG 57.081 39.130 0.00 0.00 0.00 3.07
1977 5775 5.009854 TGATGTGAAATACGCTCTGATGA 57.990 39.130 0.00 0.00 0.00 2.92
1978 5776 5.418676 TGATGTGAAATACGCTCTGATGAA 58.581 37.500 0.00 0.00 0.00 2.57
1979 5777 5.521372 TGATGTGAAATACGCTCTGATGAAG 59.479 40.000 0.00 0.00 0.00 3.02
1980 5778 5.072040 TGTGAAATACGCTCTGATGAAGA 57.928 39.130 0.00 0.00 0.00 2.87
1981 5779 5.664457 TGTGAAATACGCTCTGATGAAGAT 58.336 37.500 0.00 0.00 33.29 2.40
1982 5780 6.108687 TGTGAAATACGCTCTGATGAAGATT 58.891 36.000 0.00 0.00 33.29 2.40
1983 5781 6.595326 TGTGAAATACGCTCTGATGAAGATTT 59.405 34.615 0.00 0.00 33.29 2.17
1997 5795 9.947669 CTGATGAAGATTTTCCATTGATTCTAC 57.052 33.333 0.00 0.00 32.09 2.59
2023 5821 5.323382 ACCATATATCATTTCACTGCCCA 57.677 39.130 0.00 0.00 0.00 5.36
2027 5825 1.843368 ATCATTTCACTGCCCACCTG 58.157 50.000 0.00 0.00 0.00 4.00
2029 5827 1.973281 ATTTCACTGCCCACCTGCG 60.973 57.895 0.00 0.00 0.00 5.18
2041 5839 3.422303 CCTGCGCGCTGCTTTGTA 61.422 61.111 33.29 8.12 46.63 2.41
2042 5840 2.202222 CTGCGCGCTGCTTTGTAC 60.202 61.111 33.29 0.00 46.63 2.90
2043 5841 2.664851 TGCGCGCTGCTTTGTACT 60.665 55.556 33.29 0.00 46.63 2.73
2044 5842 1.351430 CTGCGCGCTGCTTTGTACTA 61.351 55.000 33.29 5.84 46.63 1.82
2092 5894 5.761234 TGTATCCGTTGGATTAATTACTGGC 59.239 40.000 3.27 0.00 39.79 4.85
2098 5900 5.299279 CGTTGGATTAATTACTGGCTGGATT 59.701 40.000 0.00 0.00 0.00 3.01
2099 5901 6.485313 CGTTGGATTAATTACTGGCTGGATTA 59.515 38.462 0.00 0.00 0.00 1.75
2100 5902 7.012894 CGTTGGATTAATTACTGGCTGGATTAA 59.987 37.037 13.41 13.41 0.00 1.40
2101 5903 8.860088 GTTGGATTAATTACTGGCTGGATTAAT 58.140 33.333 18.64 18.64 37.37 1.40
2102 5904 9.432982 TTGGATTAATTACTGGCTGGATTAATT 57.567 29.630 19.14 12.64 35.77 1.40
2116 5918 7.352739 GCTGGATTAATTTGTATCCGTTGTAG 58.647 38.462 0.00 0.00 42.67 2.74
2137 5939 2.722487 CTAGCTAGCACGGACGGG 59.278 66.667 18.83 0.00 0.00 5.28
2138 5940 2.831742 TAGCTAGCACGGACGGGG 60.832 66.667 18.83 0.00 0.00 5.73
2139 5941 3.348554 TAGCTAGCACGGACGGGGA 62.349 63.158 18.83 0.00 0.00 4.81
2140 5942 2.842188 TAGCTAGCACGGACGGGGAA 62.842 60.000 18.83 0.00 0.00 3.97
2141 5943 2.975536 CTAGCACGGACGGGGAAA 59.024 61.111 0.00 0.00 0.00 3.13
2142 5944 1.294138 CTAGCACGGACGGGGAAAA 59.706 57.895 0.00 0.00 0.00 2.29
2143 5945 0.739813 CTAGCACGGACGGGGAAAAG 60.740 60.000 0.00 0.00 0.00 2.27
2144 5946 2.791501 TAGCACGGACGGGGAAAAGC 62.792 60.000 0.00 0.00 0.00 3.51
2145 5947 2.281208 CACGGACGGGGAAAAGCA 60.281 61.111 0.00 0.00 0.00 3.91
2146 5948 2.032071 ACGGACGGGGAAAAGCAG 59.968 61.111 0.00 0.00 0.00 4.24
2147 5949 3.431725 CGGACGGGGAAAAGCAGC 61.432 66.667 0.00 0.00 0.00 5.25
2148 5950 3.062466 GGACGGGGAAAAGCAGCC 61.062 66.667 0.00 0.00 0.00 4.85
2149 5951 2.282180 GACGGGGAAAAGCAGCCA 60.282 61.111 0.00 0.00 0.00 4.75
2150 5952 2.282462 ACGGGGAAAAGCAGCCAG 60.282 61.111 0.00 0.00 0.00 4.85
2151 5953 3.064324 CGGGGAAAAGCAGCCAGG 61.064 66.667 0.00 0.00 0.00 4.45
2152 5954 3.385384 GGGGAAAAGCAGCCAGGC 61.385 66.667 1.84 1.84 0.00 4.85
2153 5955 2.601367 GGGAAAAGCAGCCAGGCA 60.601 61.111 15.80 0.00 35.83 4.75
2154 5956 2.209315 GGGAAAAGCAGCCAGGCAA 61.209 57.895 15.80 0.00 35.83 4.52
2155 5957 1.747774 GGAAAAGCAGCCAGGCAAA 59.252 52.632 15.80 0.00 35.83 3.68
2156 5958 0.322648 GGAAAAGCAGCCAGGCAAAT 59.677 50.000 15.80 0.00 35.83 2.32
2157 5959 1.271001 GGAAAAGCAGCCAGGCAAATT 60.271 47.619 15.80 1.26 35.83 1.82
2158 5960 2.071540 GAAAAGCAGCCAGGCAAATTC 58.928 47.619 15.80 6.94 35.83 2.17
2159 5961 0.322648 AAAGCAGCCAGGCAAATTCC 59.677 50.000 15.80 0.00 35.83 3.01
2160 5962 0.543646 AAGCAGCCAGGCAAATTCCT 60.544 50.000 15.80 0.00 36.78 3.36
2161 5963 0.969409 AGCAGCCAGGCAAATTCCTC 60.969 55.000 15.80 0.00 33.25 3.71
2162 5964 1.953231 GCAGCCAGGCAAATTCCTCC 61.953 60.000 15.80 0.00 33.25 4.30
2163 5965 0.324091 CAGCCAGGCAAATTCCTCCT 60.324 55.000 15.80 0.00 33.25 3.69
2164 5966 0.324091 AGCCAGGCAAATTCCTCCTG 60.324 55.000 15.80 11.54 45.24 3.86
2165 5967 1.953231 GCCAGGCAAATTCCTCCTGC 61.953 60.000 6.55 3.38 44.52 4.85
2166 5968 0.612732 CCAGGCAAATTCCTCCTGCA 60.613 55.000 12.57 0.00 44.52 4.41
2167 5969 0.815734 CAGGCAAATTCCTCCTGCAG 59.184 55.000 6.78 6.78 40.63 4.41
2168 5970 0.324091 AGGCAAATTCCTCCTGCAGG 60.324 55.000 27.87 27.87 45.15 4.85
2169 5971 0.613012 GGCAAATTCCTCCTGCAGGT 60.613 55.000 31.58 10.06 43.95 4.00
2170 5972 0.529378 GCAAATTCCTCCTGCAGGTG 59.471 55.000 31.58 28.10 43.95 4.00
2176 5978 2.046507 CTCCTGCAGGTGGAGTGC 60.047 66.667 31.58 0.00 44.42 4.40
2177 5979 2.527624 TCCTGCAGGTGGAGTGCT 60.528 61.111 31.58 0.00 41.78 4.40
2178 5980 2.359602 CCTGCAGGTGGAGTGCTG 60.360 66.667 25.53 0.00 41.78 4.41
2179 5981 2.429058 CTGCAGGTGGAGTGCTGT 59.571 61.111 5.57 0.00 41.78 4.40
2180 5982 1.964891 CTGCAGGTGGAGTGCTGTG 60.965 63.158 5.57 0.00 41.78 3.66
2181 5983 2.670934 GCAGGTGGAGTGCTGTGG 60.671 66.667 0.00 0.00 37.96 4.17
2182 5984 2.670934 CAGGTGGAGTGCTGTGGC 60.671 66.667 0.00 0.00 39.26 5.01
2183 5985 2.851102 AGGTGGAGTGCTGTGGCT 60.851 61.111 0.00 0.00 39.59 4.75
2184 5986 2.670934 GGTGGAGTGCTGTGGCTG 60.671 66.667 0.00 0.00 39.59 4.85
2185 5987 3.360340 GTGGAGTGCTGTGGCTGC 61.360 66.667 0.00 0.00 39.59 5.25
2186 5988 3.876236 TGGAGTGCTGTGGCTGCA 61.876 61.111 0.50 0.00 39.59 4.41
2187 5989 3.054503 GGAGTGCTGTGGCTGCAG 61.055 66.667 10.11 10.11 38.86 4.41
2188 5990 3.054503 GAGTGCTGTGGCTGCAGG 61.055 66.667 17.12 0.00 38.86 4.85
2189 5991 3.839353 GAGTGCTGTGGCTGCAGGT 62.839 63.158 17.12 0.00 38.86 4.00
2190 5992 2.032528 GTGCTGTGGCTGCAGGTA 59.967 61.111 17.12 0.00 38.86 3.08
2191 5993 2.037136 GTGCTGTGGCTGCAGGTAG 61.037 63.158 17.12 0.00 38.86 3.18
2192 5994 2.437359 GCTGTGGCTGCAGGTAGG 60.437 66.667 17.12 0.00 37.00 3.18
2193 5995 3.072476 CTGTGGCTGCAGGTAGGT 58.928 61.111 17.12 0.00 33.11 3.08
2194 5996 1.376466 CTGTGGCTGCAGGTAGGTT 59.624 57.895 17.12 0.00 33.11 3.50
2195 5997 0.250901 CTGTGGCTGCAGGTAGGTTT 60.251 55.000 17.12 0.00 33.11 3.27
2196 5998 0.250727 TGTGGCTGCAGGTAGGTTTC 60.251 55.000 17.12 0.00 0.00 2.78
2197 5999 0.250727 GTGGCTGCAGGTAGGTTTCA 60.251 55.000 17.12 0.00 0.00 2.69
2198 6000 0.250727 TGGCTGCAGGTAGGTTTCAC 60.251 55.000 17.12 0.00 0.00 3.18
2199 6001 0.960861 GGCTGCAGGTAGGTTTCACC 60.961 60.000 17.12 0.00 38.99 4.02
2211 6013 3.518634 GGTTTCACCTTGTTGCTTTCA 57.481 42.857 0.00 0.00 34.73 2.69
2212 6014 3.855858 GGTTTCACCTTGTTGCTTTCAA 58.144 40.909 0.00 0.00 34.73 2.69
2213 6015 4.441792 GGTTTCACCTTGTTGCTTTCAAT 58.558 39.130 0.00 0.00 34.73 2.57
2214 6016 4.875536 GGTTTCACCTTGTTGCTTTCAATT 59.124 37.500 0.00 0.00 34.73 2.32
2215 6017 5.220643 GGTTTCACCTTGTTGCTTTCAATTG 60.221 40.000 0.00 0.00 34.73 2.32
2216 6018 3.456280 TCACCTTGTTGCTTTCAATTGC 58.544 40.909 0.00 0.00 34.29 3.56
2217 6019 3.132646 TCACCTTGTTGCTTTCAATTGCT 59.867 39.130 0.00 0.00 34.29 3.91
2218 6020 3.872771 CACCTTGTTGCTTTCAATTGCTT 59.127 39.130 0.00 0.00 34.29 3.91
2219 6021 4.025480 CACCTTGTTGCTTTCAATTGCTTC 60.025 41.667 0.00 0.00 34.29 3.86
2220 6022 3.495753 CCTTGTTGCTTTCAATTGCTTCC 59.504 43.478 0.00 0.00 34.29 3.46
2221 6023 2.741612 TGTTGCTTTCAATTGCTTCCG 58.258 42.857 0.00 0.00 34.29 4.30
2222 6024 2.061028 GTTGCTTTCAATTGCTTCCGG 58.939 47.619 0.00 0.00 34.29 5.14
2223 6025 1.614996 TGCTTTCAATTGCTTCCGGA 58.385 45.000 0.00 0.00 0.00 5.14
2224 6026 1.959985 TGCTTTCAATTGCTTCCGGAA 59.040 42.857 17.73 17.73 0.00 4.30
2225 6027 2.363680 TGCTTTCAATTGCTTCCGGAAA 59.636 40.909 19.39 3.56 0.00 3.13
2226 6028 3.006752 TGCTTTCAATTGCTTCCGGAAAT 59.993 39.130 19.39 6.16 0.00 2.17
2227 6029 3.368843 GCTTTCAATTGCTTCCGGAAATG 59.631 43.478 19.39 8.80 0.00 2.32
2228 6030 3.591196 TTCAATTGCTTCCGGAAATGG 57.409 42.857 19.39 8.00 0.00 3.16
2229 6031 1.824230 TCAATTGCTTCCGGAAATGGG 59.176 47.619 19.39 7.61 0.00 4.00
2230 6032 0.536724 AATTGCTTCCGGAAATGGGC 59.463 50.000 19.39 17.98 0.00 5.36
2231 6033 1.329913 ATTGCTTCCGGAAATGGGCC 61.330 55.000 19.39 0.00 0.00 5.80
2232 6034 2.043953 GCTTCCGGAAATGGGCCT 60.044 61.111 19.39 0.00 0.00 5.19
2233 6035 2.418083 GCTTCCGGAAATGGGCCTG 61.418 63.158 19.39 4.85 0.00 4.85
2234 6036 1.754234 CTTCCGGAAATGGGCCTGG 60.754 63.158 19.39 0.00 0.00 4.45
2235 6037 3.955543 TTCCGGAAATGGGCCTGGC 62.956 63.158 16.28 11.05 0.00 4.85
2249 6051 1.611419 CTGGCCTCCACCATGTGAT 59.389 57.895 3.32 0.00 39.54 3.06
2258 6060 1.860950 CCACCATGTGATCGTCGAATC 59.139 52.381 0.00 0.00 35.23 2.52
2282 6084 4.323477 CGTCCCCGAGCCCACAAA 62.323 66.667 0.00 0.00 35.63 2.83
2289 6091 0.318120 CCGAGCCCACAAAATTTGCT 59.682 50.000 5.52 0.00 34.40 3.91
2295 6097 4.761975 AGCCCACAAAATTTGCTCATATG 58.238 39.130 5.52 0.00 0.00 1.78
2328 6132 6.250344 CTTCTCAGATGAAGCACAAATTCA 57.750 37.500 0.00 0.00 40.72 2.57
2329 6133 5.618056 TCTCAGATGAAGCACAAATTCAC 57.382 39.130 0.00 0.00 39.36 3.18
2330 6134 4.152938 TCTCAGATGAAGCACAAATTCACG 59.847 41.667 0.00 0.00 39.36 4.35
2331 6135 3.814842 TCAGATGAAGCACAAATTCACGT 59.185 39.130 0.00 0.00 39.36 4.49
2332 6136 3.910170 CAGATGAAGCACAAATTCACGTG 59.090 43.478 9.94 9.94 39.36 4.49
2337 6142 0.852136 GCACAAATTCACGTGGCAAC 59.148 50.000 17.00 0.00 33.62 4.17
2361 6166 8.510243 ACCAAAAATGAAGAAAAATTCAAGCT 57.490 26.923 0.00 0.00 42.21 3.74
2364 6169 9.991388 CAAAAATGAAGAAAAATTCAAGCTTCA 57.009 25.926 0.00 0.00 46.00 3.02
2373 6178 7.935210 AGAAAAATTCAAGCTTCAATTCCATGT 59.065 29.630 8.87 0.00 0.00 3.21
2376 6181 4.944962 TCAAGCTTCAATTCCATGTACG 57.055 40.909 0.00 0.00 0.00 3.67
2387 6192 4.409718 TTCCATGTACGCTATGGCTAAA 57.590 40.909 5.94 0.00 43.81 1.85
2389 6194 4.314961 TCCATGTACGCTATGGCTAAATG 58.685 43.478 5.94 2.23 43.81 2.32
2390 6195 3.436704 CCATGTACGCTATGGCTAAATGG 59.563 47.826 12.21 12.21 38.73 3.16
2391 6196 4.314961 CATGTACGCTATGGCTAAATGGA 58.685 43.478 0.00 0.00 36.09 3.41
2429 6253 5.637006 CTAGTGCTAGCCAGTCCTATTAG 57.363 47.826 13.29 0.00 0.00 1.73
2430 6254 2.630580 AGTGCTAGCCAGTCCTATTAGC 59.369 50.000 13.29 0.00 37.75 3.09
2431 6255 2.365617 GTGCTAGCCAGTCCTATTAGCA 59.634 50.000 13.29 0.74 43.02 3.49
2432 6256 3.038280 TGCTAGCCAGTCCTATTAGCAA 58.962 45.455 13.29 0.00 42.49 3.91
2433 6257 3.648067 TGCTAGCCAGTCCTATTAGCAAT 59.352 43.478 13.29 0.00 42.49 3.56
2434 6258 4.838423 TGCTAGCCAGTCCTATTAGCAATA 59.162 41.667 13.29 0.00 42.49 1.90
2438 6262 6.944234 AGCCAGTCCTATTAGCAATAAAAC 57.056 37.500 0.00 0.00 0.00 2.43
2453 6277 7.092716 AGCAATAAAACCAAAACTAGATGCAG 58.907 34.615 0.00 0.00 0.00 4.41
2472 6300 9.851686 AGATGCAGGAGTATAAATAAATCAACA 57.148 29.630 0.00 0.00 0.00 3.33
2488 6316 2.091541 CAACACGTGATAATGGGCCTT 58.908 47.619 25.01 0.00 0.00 4.35
2489 6317 1.750193 ACACGTGATAATGGGCCTTG 58.250 50.000 25.01 0.00 0.00 3.61
2521 6349 3.748568 GGTTGTGATCGCTCTTCTTCTTT 59.251 43.478 7.94 0.00 0.00 2.52
2523 6351 5.378180 GTTGTGATCGCTCTTCTTCTTTTC 58.622 41.667 7.94 0.00 0.00 2.29
2525 6353 5.300752 TGTGATCGCTCTTCTTCTTTTCTT 58.699 37.500 7.94 0.00 0.00 2.52
2526 6354 5.760253 TGTGATCGCTCTTCTTCTTTTCTTT 59.240 36.000 7.94 0.00 0.00 2.52
2527 6355 6.929049 TGTGATCGCTCTTCTTCTTTTCTTTA 59.071 34.615 7.94 0.00 0.00 1.85
2528 6356 7.604164 TGTGATCGCTCTTCTTCTTTTCTTTAT 59.396 33.333 7.94 0.00 0.00 1.40
2529 6357 9.088512 GTGATCGCTCTTCTTCTTTTCTTTATA 57.911 33.333 0.00 0.00 0.00 0.98
2530 6358 9.823647 TGATCGCTCTTCTTCTTTTCTTTATAT 57.176 29.630 0.00 0.00 0.00 0.86
2597 6425 1.620822 GCCATATTAACAGGCCCTGG 58.379 55.000 16.70 0.00 42.58 4.45
2602 6430 1.372501 ATTAACAGGCCCTGGTGACT 58.627 50.000 12.79 0.00 35.51 3.41
2698 10315 3.862845 ACCGCAACAACAACAAAAGAATC 59.137 39.130 0.00 0.00 0.00 2.52
2701 10318 4.207019 CGCAACAACAACAAAAGAATCTCC 59.793 41.667 0.00 0.00 0.00 3.71
2820 10437 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
2821 10438 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
2822 10439 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
2823 10440 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 2.905075 TGGTAGCTCCACAATCATTCG 58.095 47.619 0.00 0.00 41.93 3.34
138 140 4.793071 CATAGTTCCGACTCTAGAGCATG 58.207 47.826 19.97 9.34 37.33 4.06
265 267 3.894427 AGGAGCGTAGATTGATCTGTCAT 59.106 43.478 3.79 0.00 37.76 3.06
275 277 5.692928 TCCTTTACTCTAGGAGCGTAGATT 58.307 41.667 0.93 0.00 36.88 2.40
285 291 8.410141 CAAGTACTTGATCTCCTTTACTCTAGG 58.590 40.741 28.17 0.00 42.93 3.02
341 347 5.544176 TCAAGGTTCTATCTTCTGTTCTGGT 59.456 40.000 0.00 0.00 0.00 4.00
403 409 8.887717 CAGTAAGAATACAATCAGCTAAAGCTT 58.112 33.333 0.63 0.00 41.08 3.74
421 427 3.844211 AGGGTATTCAGTGGCAGTAAGAA 59.156 43.478 0.00 0.00 0.00 2.52
430 436 1.134491 GGAACGGAGGGTATTCAGTGG 60.134 57.143 0.00 0.00 0.00 4.00
437 443 7.072076 AGACAAATATTTAGGAACGGAGGGTAT 59.928 37.037 0.00 0.00 0.00 2.73
469 475 7.009631 CCGTATGTAATCTCTTGTCAAAGTCTG 59.990 40.741 0.00 0.00 34.78 3.51
473 479 6.019479 GCTCCGTATGTAATCTCTTGTCAAAG 60.019 42.308 0.00 0.00 34.45 2.77
477 483 4.933330 TGCTCCGTATGTAATCTCTTGTC 58.067 43.478 0.00 0.00 0.00 3.18
483 489 6.258727 CACTCATTTTGCTCCGTATGTAATCT 59.741 38.462 0.00 0.00 0.00 2.40
494 500 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
519 525 8.946085 ACACAGTTGTATATGGACATGTTTTAG 58.054 33.333 0.00 0.00 32.60 1.85
525 531 5.874261 TCACACACAGTTGTATATGGACATG 59.126 40.000 0.00 0.00 33.30 3.21
531 569 7.264947 TGGAGTATCACACACAGTTGTATATG 58.735 38.462 0.00 0.00 36.25 1.78
539 577 5.227569 TCAAATGGAGTATCACACACAGT 57.772 39.130 0.00 0.00 36.25 3.55
573 644 7.037586 ACTCCCTCTGTTCCTAAATATTTGTCA 60.038 37.037 11.05 2.66 0.00 3.58
635 714 9.941664 CGCTCTTCAAAAATAAGATTCATGTAT 57.058 29.630 0.00 0.00 32.72 2.29
674 754 3.907894 TTACATGGCACGTCCTTTTTC 57.092 42.857 0.00 0.00 35.26 2.29
680 760 1.149987 TCGTTTTACATGGCACGTCC 58.850 50.000 0.00 0.00 34.24 4.79
681 761 2.567067 GTTCGTTTTACATGGCACGTC 58.433 47.619 0.00 0.00 34.24 4.34
693 773 1.888638 CGGTGGGGACGTTCGTTTT 60.889 57.895 0.00 0.00 0.00 2.43
694 774 2.280321 CGGTGGGGACGTTCGTTT 60.280 61.111 0.00 0.00 0.00 3.60
753 867 0.937231 CGGTCAATTGCGCCGTTTTT 60.937 50.000 23.91 0.00 40.53 1.94
793 907 4.142556 CCTTGTTTGTGGTTTCTGTTACGT 60.143 41.667 0.00 0.00 0.00 3.57
795 909 5.570234 TCCTTGTTTGTGGTTTCTGTTAC 57.430 39.130 0.00 0.00 0.00 2.50
801 915 3.840468 ACGTTTCCTTGTTTGTGGTTTC 58.160 40.909 0.00 0.00 0.00 2.78
807 921 6.627395 TTGATCATACGTTTCCTTGTTTGT 57.373 33.333 0.00 0.00 0.00 2.83
826 940 6.772605 TCCGACTTGGATATGATCAATTGAT 58.227 36.000 20.85 20.85 43.74 2.57
827 941 6.173427 TCCGACTTGGATATGATCAATTGA 57.827 37.500 11.26 11.26 43.74 2.57
988 4408 0.618981 CTGGTTGAGGGGGTTAGACC 59.381 60.000 0.00 0.00 37.60 3.85
1000 4424 2.032528 CTTCCTGGCGCTGGTTGA 59.967 61.111 7.64 0.00 0.00 3.18
1143 4570 3.295973 TCACGGTGACTATGATGATGGA 58.704 45.455 6.76 0.00 0.00 3.41
1400 5185 2.833582 TGGATCTCGACCCTCCGC 60.834 66.667 0.00 0.00 31.36 5.54
1407 5192 0.099082 GTGGTCTCGTGGATCTCGAC 59.901 60.000 8.84 3.07 33.71 4.20
1519 5304 2.258591 GCTCCAGCGACTCGAACA 59.741 61.111 1.63 0.00 0.00 3.18
1636 5421 4.764336 CAAGCATGTGCGTGCCCG 62.764 66.667 12.21 1.20 46.19 6.13
1667 5452 1.238439 AAAGTCGGTGGCACTTGATG 58.762 50.000 18.45 3.02 34.21 3.07
1735 5524 7.312154 CACTACTAGTATACTACTCGATCCGT 58.688 42.308 8.59 5.62 40.14 4.69
1736 5525 6.253298 GCACTACTAGTATACTACTCGATCCG 59.747 46.154 8.59 0.00 40.14 4.18
1737 5526 7.095910 TGCACTACTAGTATACTACTCGATCC 58.904 42.308 8.59 0.00 40.14 3.36
1763 5553 4.273318 AGGGTGGTAAAATCAGAAGCATC 58.727 43.478 0.00 0.00 0.00 3.91
1764 5554 4.322057 AGGGTGGTAAAATCAGAAGCAT 57.678 40.909 0.00 0.00 0.00 3.79
1767 5557 6.404734 GCAACATAGGGTGGTAAAATCAGAAG 60.405 42.308 0.00 0.00 0.00 2.85
1770 5560 4.949856 AGCAACATAGGGTGGTAAAATCAG 59.050 41.667 0.00 0.00 0.00 2.90
1773 5563 4.017499 AGGAGCAACATAGGGTGGTAAAAT 60.017 41.667 0.00 0.00 0.00 1.82
1778 5568 2.263895 TAGGAGCAACATAGGGTGGT 57.736 50.000 0.00 0.00 0.00 4.16
1780 5570 4.130118 GTTCATAGGAGCAACATAGGGTG 58.870 47.826 0.00 0.00 0.00 4.61
1782 5572 4.101585 TCTGTTCATAGGAGCAACATAGGG 59.898 45.833 0.00 0.00 33.63 3.53
1795 5593 9.334947 ACATGTCCATCTTTTATCTGTTCATAG 57.665 33.333 0.00 0.00 0.00 2.23
1797 5595 7.011763 CGACATGTCCATCTTTTATCTGTTCAT 59.988 37.037 20.03 0.00 0.00 2.57
1809 5607 1.275666 TCACCCGACATGTCCATCTT 58.724 50.000 20.03 0.00 0.00 2.40
1843 5641 9.320295 GGAGGGAGTACTAGTTATACTACTAGA 57.680 40.741 15.51 1.19 46.88 2.43
1846 5644 9.325248 CTAGGAGGGAGTACTAGTTATACTACT 57.675 40.741 0.00 0.00 34.38 2.57
1847 5645 8.040727 GCTAGGAGGGAGTACTAGTTATACTAC 58.959 44.444 0.00 0.00 37.20 2.73
1849 5647 6.793988 AGCTAGGAGGGAGTACTAGTTATACT 59.206 42.308 0.00 0.00 37.20 2.12
1850 5648 7.019656 AGCTAGGAGGGAGTACTAGTTATAC 57.980 44.000 0.00 0.00 37.20 1.47
1853 5651 6.465607 GCTTAGCTAGGAGGGAGTACTAGTTA 60.466 46.154 7.11 0.00 37.20 2.24
1854 5652 5.690899 GCTTAGCTAGGAGGGAGTACTAGTT 60.691 48.000 7.11 0.00 37.20 2.24
1856 5654 4.042435 AGCTTAGCTAGGAGGGAGTACTAG 59.958 50.000 4.30 0.00 36.99 2.57
1858 5656 2.787035 AGCTTAGCTAGGAGGGAGTACT 59.213 50.000 4.30 0.00 36.99 2.73
1859 5657 3.232720 AGCTTAGCTAGGAGGGAGTAC 57.767 52.381 4.30 0.00 36.99 2.73
1861 5659 2.023888 TCAAGCTTAGCTAGGAGGGAGT 60.024 50.000 7.32 0.00 38.25 3.85
1863 5661 2.848678 TCAAGCTTAGCTAGGAGGGA 57.151 50.000 7.32 0.00 38.25 4.20
1864 5662 3.389329 TGAATCAAGCTTAGCTAGGAGGG 59.611 47.826 7.32 0.00 38.25 4.30
1865 5663 4.679373 TGAATCAAGCTTAGCTAGGAGG 57.321 45.455 7.32 0.00 38.25 4.30
1866 5664 5.049543 GCATTGAATCAAGCTTAGCTAGGAG 60.050 44.000 7.32 0.00 38.25 3.69
1867 5665 4.818546 GCATTGAATCAAGCTTAGCTAGGA 59.181 41.667 7.32 9.10 38.25 2.94
1868 5666 4.820716 AGCATTGAATCAAGCTTAGCTAGG 59.179 41.667 7.32 3.08 38.25 3.02
1869 5667 5.296283 ACAGCATTGAATCAAGCTTAGCTAG 59.704 40.000 7.32 7.48 38.25 3.42
1870 5668 5.188434 ACAGCATTGAATCAAGCTTAGCTA 58.812 37.500 7.32 0.00 38.25 3.32
1871 5669 4.015084 ACAGCATTGAATCAAGCTTAGCT 58.985 39.130 14.22 0.00 42.56 3.32
1872 5670 4.367386 ACAGCATTGAATCAAGCTTAGC 57.633 40.909 14.22 0.00 34.61 3.09
1873 5671 5.125097 AGGAACAGCATTGAATCAAGCTTAG 59.875 40.000 14.22 9.01 34.61 2.18
1877 5675 3.863142 AGGAACAGCATTGAATCAAGC 57.137 42.857 1.10 5.67 0.00 4.01
1894 5692 0.256752 AACTGCATGCTGCCATAGGA 59.743 50.000 22.92 0.00 44.23 2.94
1895 5693 1.108776 AAACTGCATGCTGCCATAGG 58.891 50.000 22.92 4.22 44.23 2.57
1896 5694 4.579454 ATTAAACTGCATGCTGCCATAG 57.421 40.909 22.92 11.36 44.23 2.23
1897 5695 5.132502 AGTATTAAACTGCATGCTGCCATA 58.867 37.500 22.92 11.46 44.23 2.74
1898 5696 3.956199 AGTATTAAACTGCATGCTGCCAT 59.044 39.130 22.92 12.37 44.23 4.40
1899 5697 3.355378 AGTATTAAACTGCATGCTGCCA 58.645 40.909 22.92 6.85 44.23 4.92
1900 5698 4.376340 AAGTATTAAACTGCATGCTGCC 57.624 40.909 22.92 4.28 44.23 4.85
1901 5699 5.452302 CGTAAAGTATTAAACTGCATGCTGC 59.548 40.000 22.92 6.28 45.29 5.25
1902 5700 5.452302 GCGTAAAGTATTAAACTGCATGCTG 59.548 40.000 21.60 21.60 38.88 4.41
1903 5701 5.354234 AGCGTAAAGTATTAAACTGCATGCT 59.646 36.000 20.33 0.00 38.95 3.79
1904 5702 5.569413 AGCGTAAAGTATTAAACTGCATGC 58.431 37.500 11.82 11.82 38.88 4.06
1905 5703 7.005062 AGAGCGTAAAGTATTAAACTGCATG 57.995 36.000 0.00 0.00 38.88 4.06
1906 5704 7.611213 AAGAGCGTAAAGTATTAAACTGCAT 57.389 32.000 0.00 0.00 38.88 3.96
1907 5705 8.712285 ATAAGAGCGTAAAGTATTAAACTGCA 57.288 30.769 0.00 0.00 38.88 4.41
1918 5716 9.793252 TCGTAAAGAAATATAAGAGCGTAAAGT 57.207 29.630 0.00 0.00 0.00 2.66
1921 5719 9.241317 CCTTCGTAAAGAAATATAAGAGCGTAA 57.759 33.333 0.00 0.00 38.57 3.18
1922 5720 7.864379 CCCTTCGTAAAGAAATATAAGAGCGTA 59.136 37.037 0.00 0.00 38.57 4.42
1923 5721 6.700520 CCCTTCGTAAAGAAATATAAGAGCGT 59.299 38.462 0.00 0.00 38.57 5.07
1924 5722 6.921857 TCCCTTCGTAAAGAAATATAAGAGCG 59.078 38.462 0.00 0.00 38.57 5.03
1925 5723 7.927092 ACTCCCTTCGTAAAGAAATATAAGAGC 59.073 37.037 0.00 0.00 38.57 4.09
1933 5731 9.712305 CATCATATACTCCCTTCGTAAAGAAAT 57.288 33.333 0.00 0.00 38.57 2.17
1934 5732 8.701895 ACATCATATACTCCCTTCGTAAAGAAA 58.298 33.333 0.00 0.00 38.57 2.52
1935 5733 8.141909 CACATCATATACTCCCTTCGTAAAGAA 58.858 37.037 0.00 0.00 34.14 2.52
1936 5734 7.504574 TCACATCATATACTCCCTTCGTAAAGA 59.495 37.037 0.00 0.00 34.14 2.52
1937 5735 7.658261 TCACATCATATACTCCCTTCGTAAAG 58.342 38.462 0.00 0.00 0.00 1.85
1938 5736 7.591421 TCACATCATATACTCCCTTCGTAAA 57.409 36.000 0.00 0.00 0.00 2.01
1939 5737 7.591421 TTCACATCATATACTCCCTTCGTAA 57.409 36.000 0.00 0.00 0.00 3.18
1940 5738 7.591421 TTTCACATCATATACTCCCTTCGTA 57.409 36.000 0.00 0.00 0.00 3.43
1941 5739 6.479972 TTTCACATCATATACTCCCTTCGT 57.520 37.500 0.00 0.00 0.00 3.85
1942 5740 7.273598 CGTATTTCACATCATATACTCCCTTCG 59.726 40.741 0.00 0.00 0.00 3.79
1943 5741 7.063544 GCGTATTTCACATCATATACTCCCTTC 59.936 40.741 0.00 0.00 0.00 3.46
1944 5742 6.874134 GCGTATTTCACATCATATACTCCCTT 59.126 38.462 0.00 0.00 0.00 3.95
1945 5743 6.211584 AGCGTATTTCACATCATATACTCCCT 59.788 38.462 0.00 0.00 0.00 4.20
1946 5744 6.398918 AGCGTATTTCACATCATATACTCCC 58.601 40.000 0.00 0.00 0.00 4.30
1947 5745 7.274468 CAGAGCGTATTTCACATCATATACTCC 59.726 40.741 0.00 0.00 0.00 3.85
1948 5746 8.023706 TCAGAGCGTATTTCACATCATATACTC 58.976 37.037 0.00 0.00 0.00 2.59
1949 5747 7.886338 TCAGAGCGTATTTCACATCATATACT 58.114 34.615 0.00 0.00 0.00 2.12
1950 5748 8.590470 CATCAGAGCGTATTTCACATCATATAC 58.410 37.037 0.00 0.00 0.00 1.47
1951 5749 8.522830 TCATCAGAGCGTATTTCACATCATATA 58.477 33.333 0.00 0.00 0.00 0.86
1952 5750 7.381323 TCATCAGAGCGTATTTCACATCATAT 58.619 34.615 0.00 0.00 0.00 1.78
1953 5751 6.748132 TCATCAGAGCGTATTTCACATCATA 58.252 36.000 0.00 0.00 0.00 2.15
1954 5752 5.604565 TCATCAGAGCGTATTTCACATCAT 58.395 37.500 0.00 0.00 0.00 2.45
1955 5753 5.009854 TCATCAGAGCGTATTTCACATCA 57.990 39.130 0.00 0.00 0.00 3.07
1956 5754 5.750547 TCTTCATCAGAGCGTATTTCACATC 59.249 40.000 0.00 0.00 0.00 3.06
1957 5755 5.664457 TCTTCATCAGAGCGTATTTCACAT 58.336 37.500 0.00 0.00 0.00 3.21
1958 5756 5.072040 TCTTCATCAGAGCGTATTTCACA 57.928 39.130 0.00 0.00 0.00 3.58
1959 5757 6.595772 AATCTTCATCAGAGCGTATTTCAC 57.404 37.500 0.00 0.00 33.87 3.18
1960 5758 7.201644 GGAAAATCTTCATCAGAGCGTATTTCA 60.202 37.037 0.00 0.00 33.87 2.69
1961 5759 7.128976 GGAAAATCTTCATCAGAGCGTATTTC 58.871 38.462 0.00 0.00 33.87 2.17
1962 5760 6.599244 TGGAAAATCTTCATCAGAGCGTATTT 59.401 34.615 0.00 0.00 33.87 1.40
1963 5761 6.115446 TGGAAAATCTTCATCAGAGCGTATT 58.885 36.000 0.00 0.00 33.87 1.89
1964 5762 5.674525 TGGAAAATCTTCATCAGAGCGTAT 58.325 37.500 0.00 0.00 33.87 3.06
1965 5763 5.084818 TGGAAAATCTTCATCAGAGCGTA 57.915 39.130 0.00 0.00 33.87 4.42
1966 5764 3.942829 TGGAAAATCTTCATCAGAGCGT 58.057 40.909 0.00 0.00 33.87 5.07
1967 5765 5.065602 TCAATGGAAAATCTTCATCAGAGCG 59.934 40.000 0.00 0.00 33.87 5.03
1968 5766 6.446781 TCAATGGAAAATCTTCATCAGAGC 57.553 37.500 0.00 0.00 33.87 4.09
1969 5767 8.904834 AGAATCAATGGAAAATCTTCATCAGAG 58.095 33.333 0.00 0.00 33.87 3.35
1970 5768 8.818622 AGAATCAATGGAAAATCTTCATCAGA 57.181 30.769 0.00 0.00 35.33 3.27
1971 5769 9.947669 GTAGAATCAATGGAAAATCTTCATCAG 57.052 33.333 0.00 0.00 32.75 2.90
1972 5770 8.615211 CGTAGAATCAATGGAAAATCTTCATCA 58.385 33.333 0.00 0.00 32.75 3.07
1973 5771 8.616076 ACGTAGAATCAATGGAAAATCTTCATC 58.384 33.333 0.00 0.00 32.75 2.92
1974 5772 8.511604 ACGTAGAATCAATGGAAAATCTTCAT 57.488 30.769 0.00 0.00 32.75 2.57
1975 5773 7.921786 ACGTAGAATCAATGGAAAATCTTCA 57.078 32.000 0.00 0.00 32.75 3.02
1976 5774 9.704098 GTTACGTAGAATCAATGGAAAATCTTC 57.296 33.333 0.00 0.00 0.00 2.87
1977 5775 8.674607 GGTTACGTAGAATCAATGGAAAATCTT 58.325 33.333 0.00 0.00 0.00 2.40
1978 5776 7.827236 TGGTTACGTAGAATCAATGGAAAATCT 59.173 33.333 0.00 0.00 0.00 2.40
1979 5777 7.981142 TGGTTACGTAGAATCAATGGAAAATC 58.019 34.615 0.00 0.00 0.00 2.17
1980 5778 7.931578 TGGTTACGTAGAATCAATGGAAAAT 57.068 32.000 0.00 0.00 0.00 1.82
1981 5779 7.931578 ATGGTTACGTAGAATCAATGGAAAA 57.068 32.000 0.00 0.00 0.00 2.29
1997 5795 6.128282 GGGCAGTGAAATGATATATGGTTACG 60.128 42.308 0.00 0.00 0.00 3.18
2027 5825 1.345176 CTAGTACAAAGCAGCGCGC 59.655 57.895 26.66 26.66 42.91 6.86
2029 5827 4.859629 AATTACTAGTACAAAGCAGCGC 57.140 40.909 0.91 0.00 0.00 5.92
2030 5828 7.521509 AGTTAATTACTAGTACAAAGCAGCG 57.478 36.000 0.91 0.00 34.56 5.18
2031 5829 7.692705 GCAAGTTAATTACTAGTACAAAGCAGC 59.307 37.037 0.91 0.00 35.54 5.25
2032 5830 8.936864 AGCAAGTTAATTACTAGTACAAAGCAG 58.063 33.333 0.91 0.00 35.54 4.24
2034 5832 8.175716 CCAGCAAGTTAATTACTAGTACAAAGC 58.824 37.037 0.91 0.00 35.54 3.51
2035 5833 9.431887 TCCAGCAAGTTAATTACTAGTACAAAG 57.568 33.333 0.91 0.00 35.54 2.77
2036 5834 9.953565 ATCCAGCAAGTTAATTACTAGTACAAA 57.046 29.630 0.91 0.00 35.54 2.83
2037 5835 9.378551 CATCCAGCAAGTTAATTACTAGTACAA 57.621 33.333 0.91 0.00 35.54 2.41
2038 5836 7.985184 CCATCCAGCAAGTTAATTACTAGTACA 59.015 37.037 0.91 0.00 35.54 2.90
2039 5837 8.202137 TCCATCCAGCAAGTTAATTACTAGTAC 58.798 37.037 0.91 0.00 35.54 2.73
2040 5838 8.313944 TCCATCCAGCAAGTTAATTACTAGTA 57.686 34.615 0.00 0.00 35.54 1.82
2041 5839 7.195374 TCCATCCAGCAAGTTAATTACTAGT 57.805 36.000 0.00 0.00 35.54 2.57
2042 5840 8.682936 AATCCATCCAGCAAGTTAATTACTAG 57.317 34.615 0.00 0.00 35.54 2.57
2043 5841 8.902806 CAAATCCATCCAGCAAGTTAATTACTA 58.097 33.333 0.00 0.00 35.54 1.82
2044 5842 7.397192 ACAAATCCATCCAGCAAGTTAATTACT 59.603 33.333 0.00 0.00 39.32 2.24
2087 5889 4.821805 CGGATACAAATTAATCCAGCCAGT 59.178 41.667 12.44 0.00 41.57 4.00
2092 5894 7.011950 TGCTACAACGGATACAAATTAATCCAG 59.988 37.037 12.44 8.70 41.57 3.86
2098 5900 5.424757 AGCTGCTACAACGGATACAAATTA 58.575 37.500 0.00 0.00 0.00 1.40
2099 5901 4.261801 AGCTGCTACAACGGATACAAATT 58.738 39.130 0.00 0.00 0.00 1.82
2100 5902 3.873910 AGCTGCTACAACGGATACAAAT 58.126 40.909 0.00 0.00 0.00 2.32
2101 5903 3.328382 AGCTGCTACAACGGATACAAA 57.672 42.857 0.00 0.00 0.00 2.83
2102 5904 3.737047 GCTAGCTGCTACAACGGATACAA 60.737 47.826 7.70 0.00 38.95 2.41
2129 5931 2.032071 CTGCTTTTCCCCGTCCGT 59.968 61.111 0.00 0.00 0.00 4.69
2130 5932 3.431725 GCTGCTTTTCCCCGTCCG 61.432 66.667 0.00 0.00 0.00 4.79
2131 5933 3.062466 GGCTGCTTTTCCCCGTCC 61.062 66.667 0.00 0.00 0.00 4.79
2132 5934 2.282180 TGGCTGCTTTTCCCCGTC 60.282 61.111 0.00 0.00 0.00 4.79
2133 5935 2.282462 CTGGCTGCTTTTCCCCGT 60.282 61.111 0.00 0.00 0.00 5.28
2134 5936 3.064324 CCTGGCTGCTTTTCCCCG 61.064 66.667 0.00 0.00 0.00 5.73
2135 5937 3.385384 GCCTGGCTGCTTTTCCCC 61.385 66.667 12.43 0.00 0.00 4.81
2136 5938 1.757423 TTTGCCTGGCTGCTTTTCCC 61.757 55.000 21.03 0.00 0.00 3.97
2137 5939 0.322648 ATTTGCCTGGCTGCTTTTCC 59.677 50.000 21.03 0.00 0.00 3.13
2138 5940 2.071540 GAATTTGCCTGGCTGCTTTTC 58.928 47.619 21.03 11.51 0.00 2.29
2139 5941 1.271001 GGAATTTGCCTGGCTGCTTTT 60.271 47.619 21.03 6.44 0.00 2.27
2140 5942 0.322648 GGAATTTGCCTGGCTGCTTT 59.677 50.000 21.03 8.23 0.00 3.51
2141 5943 0.543646 AGGAATTTGCCTGGCTGCTT 60.544 50.000 21.03 9.87 36.76 3.91
2142 5944 0.969409 GAGGAATTTGCCTGGCTGCT 60.969 55.000 21.03 9.93 38.73 4.24
2143 5945 1.514553 GAGGAATTTGCCTGGCTGC 59.485 57.895 21.03 4.51 38.73 5.25
2144 5946 0.324091 AGGAGGAATTTGCCTGGCTG 60.324 55.000 21.03 0.00 38.73 4.85
2145 5947 0.324091 CAGGAGGAATTTGCCTGGCT 60.324 55.000 21.03 0.00 44.24 4.75
2146 5948 2.196319 CAGGAGGAATTTGCCTGGC 58.804 57.895 12.87 12.87 44.24 4.85
2148 5950 2.564080 CCTGCAGGAGGAATTTGCCTG 61.564 57.143 29.88 14.42 46.33 4.85
2149 5951 0.324091 CCTGCAGGAGGAATTTGCCT 60.324 55.000 29.88 0.00 46.33 4.75
2150 5952 0.613012 ACCTGCAGGAGGAATTTGCC 60.613 55.000 39.19 0.00 46.33 4.52
2151 5953 0.529378 CACCTGCAGGAGGAATTTGC 59.471 55.000 39.19 0.00 46.33 3.68
2160 5962 2.527624 AGCACTCCACCTGCAGGA 60.528 61.111 39.19 16.63 37.08 3.86
2161 5963 2.359602 CAGCACTCCACCTGCAGG 60.360 66.667 31.60 31.60 37.08 4.85
2162 5964 1.964891 CACAGCACTCCACCTGCAG 60.965 63.158 6.78 6.78 37.08 4.41
2163 5965 2.111669 CACAGCACTCCACCTGCA 59.888 61.111 0.00 0.00 37.08 4.41
2164 5966 2.670934 CCACAGCACTCCACCTGC 60.671 66.667 0.00 0.00 32.37 4.85
2165 5967 2.670934 GCCACAGCACTCCACCTG 60.671 66.667 0.00 0.00 39.53 4.00
2166 5968 2.851102 AGCCACAGCACTCCACCT 60.851 61.111 0.00 0.00 43.56 4.00
2167 5969 2.670934 CAGCCACAGCACTCCACC 60.671 66.667 0.00 0.00 43.56 4.61
2168 5970 3.360340 GCAGCCACAGCACTCCAC 61.360 66.667 0.00 0.00 43.56 4.02
2169 5971 3.837570 CTGCAGCCACAGCACTCCA 62.838 63.158 0.00 0.00 43.56 3.86
2170 5972 3.054503 CTGCAGCCACAGCACTCC 61.055 66.667 0.00 0.00 43.56 3.85
2171 5973 2.454832 TACCTGCAGCCACAGCACTC 62.455 60.000 8.66 0.00 43.56 3.51
2172 5974 2.460662 CTACCTGCAGCCACAGCACT 62.461 60.000 8.66 0.00 43.56 4.40
2173 5975 2.032528 TACCTGCAGCCACAGCAC 59.967 61.111 8.66 0.00 43.56 4.40
2174 5976 2.348620 CTACCTGCAGCCACAGCA 59.651 61.111 8.66 0.00 43.56 4.41
2175 5977 2.437359 CCTACCTGCAGCCACAGC 60.437 66.667 8.66 0.00 36.29 4.40
2176 5978 0.250901 AAACCTACCTGCAGCCACAG 60.251 55.000 8.66 1.68 37.42 3.66
2177 5979 0.250727 GAAACCTACCTGCAGCCACA 60.251 55.000 8.66 0.00 0.00 4.17
2178 5980 0.250727 TGAAACCTACCTGCAGCCAC 60.251 55.000 8.66 0.00 0.00 5.01
2179 5981 0.250727 GTGAAACCTACCTGCAGCCA 60.251 55.000 8.66 0.00 0.00 4.75
2180 5982 2.556286 GTGAAACCTACCTGCAGCC 58.444 57.895 8.66 0.00 0.00 4.85
2192 5994 5.727515 GCAATTGAAAGCAACAAGGTGAAAC 60.728 40.000 10.34 0.00 36.72 2.78
2193 5995 4.332268 GCAATTGAAAGCAACAAGGTGAAA 59.668 37.500 10.34 0.00 36.72 2.69
2194 5996 3.870419 GCAATTGAAAGCAACAAGGTGAA 59.130 39.130 10.34 0.00 36.72 3.18
2195 5997 3.132646 AGCAATTGAAAGCAACAAGGTGA 59.867 39.130 10.34 0.00 36.72 4.02
2196 5998 3.460103 AGCAATTGAAAGCAACAAGGTG 58.540 40.909 10.34 0.00 36.72 4.00
2197 5999 3.825143 AGCAATTGAAAGCAACAAGGT 57.175 38.095 10.34 0.00 36.72 3.50
2198 6000 3.495753 GGAAGCAATTGAAAGCAACAAGG 59.504 43.478 10.34 0.00 36.72 3.61
2199 6001 3.182972 CGGAAGCAATTGAAAGCAACAAG 59.817 43.478 10.34 0.00 36.72 3.16
2200 6002 3.122297 CGGAAGCAATTGAAAGCAACAA 58.878 40.909 10.34 0.00 36.72 2.83
2201 6003 2.545532 CCGGAAGCAATTGAAAGCAACA 60.546 45.455 10.34 0.00 36.72 3.33
2202 6004 2.061028 CCGGAAGCAATTGAAAGCAAC 58.939 47.619 10.34 0.00 36.72 4.17
2203 6005 1.959985 TCCGGAAGCAATTGAAAGCAA 59.040 42.857 10.34 0.00 38.60 3.91
2204 6006 1.614996 TCCGGAAGCAATTGAAAGCA 58.385 45.000 10.34 0.00 0.00 3.91
2205 6007 2.723124 TTCCGGAAGCAATTGAAAGC 57.277 45.000 14.35 0.00 0.00 3.51
2206 6008 3.928375 CCATTTCCGGAAGCAATTGAAAG 59.072 43.478 17.97 0.00 0.00 2.62
2207 6009 3.306641 CCCATTTCCGGAAGCAATTGAAA 60.307 43.478 17.97 0.00 0.00 2.69
2208 6010 2.233431 CCCATTTCCGGAAGCAATTGAA 59.767 45.455 17.97 0.00 0.00 2.69
2209 6011 1.824230 CCCATTTCCGGAAGCAATTGA 59.176 47.619 17.97 0.22 0.00 2.57
2210 6012 1.740043 GCCCATTTCCGGAAGCAATTG 60.740 52.381 17.97 10.82 0.00 2.32
2211 6013 0.536724 GCCCATTTCCGGAAGCAATT 59.463 50.000 17.97 0.00 0.00 2.32
2212 6014 1.329913 GGCCCATTTCCGGAAGCAAT 61.330 55.000 22.98 10.68 0.00 3.56
2213 6015 1.981853 GGCCCATTTCCGGAAGCAA 60.982 57.895 22.98 8.81 0.00 3.91
2214 6016 2.362375 GGCCCATTTCCGGAAGCA 60.362 61.111 22.98 9.52 0.00 3.91
2215 6017 2.043953 AGGCCCATTTCCGGAAGC 60.044 61.111 17.97 16.74 0.00 3.86
2216 6018 1.754234 CCAGGCCCATTTCCGGAAG 60.754 63.158 17.97 6.73 0.00 3.46
2217 6019 2.358619 CCAGGCCCATTTCCGGAA 59.641 61.111 14.35 14.35 0.00 4.30
2218 6020 4.440829 GCCAGGCCCATTTCCGGA 62.441 66.667 0.00 0.00 0.00 5.14
2229 6031 4.052518 ACATGGTGGAGGCCAGGC 62.053 66.667 5.01 1.26 43.43 4.85
2230 6032 1.929860 ATCACATGGTGGAGGCCAGG 61.930 60.000 5.01 0.00 44.96 4.45
2231 6033 0.465097 GATCACATGGTGGAGGCCAG 60.465 60.000 5.01 0.00 42.47 4.85
2232 6034 1.609239 GATCACATGGTGGAGGCCA 59.391 57.895 5.01 0.00 43.48 5.36
2233 6035 1.524621 CGATCACATGGTGGAGGCC 60.525 63.158 0.00 0.00 33.87 5.19
2234 6036 0.811616 GACGATCACATGGTGGAGGC 60.812 60.000 0.00 0.00 33.87 4.70
2235 6037 0.528466 CGACGATCACATGGTGGAGG 60.528 60.000 0.00 0.00 33.87 4.30
2236 6038 0.455815 TCGACGATCACATGGTGGAG 59.544 55.000 0.00 0.00 33.87 3.86
2237 6039 0.892063 TTCGACGATCACATGGTGGA 59.108 50.000 0.00 0.00 33.87 4.02
2238 6040 1.860950 GATTCGACGATCACATGGTGG 59.139 52.381 0.00 0.00 33.87 4.61
2239 6041 1.518515 CGATTCGACGATCACATGGTG 59.481 52.381 0.00 0.00 35.09 4.17
2240 6042 1.840181 CGATTCGACGATCACATGGT 58.160 50.000 0.00 0.00 35.09 3.55
2274 6076 4.330620 CACATATGAGCAAATTTTGTGGGC 59.669 41.667 10.38 0.20 31.67 5.36
2289 6091 3.198417 TGAGAAGCAAGGCTCACATATGA 59.802 43.478 10.38 0.00 38.25 2.15
2295 6097 2.008329 CATCTGAGAAGCAAGGCTCAC 58.992 52.381 0.00 0.00 38.25 3.51
2327 6131 2.215907 TCATTTTTGGTTGCCACGTG 57.784 45.000 9.08 9.08 30.78 4.49
2328 6132 2.428890 TCTTCATTTTTGGTTGCCACGT 59.571 40.909 0.00 0.00 30.78 4.49
2329 6133 3.090952 TCTTCATTTTTGGTTGCCACG 57.909 42.857 0.00 0.00 30.78 4.94
2330 6134 5.809719 TTTTCTTCATTTTTGGTTGCCAC 57.190 34.783 0.00 0.00 30.78 5.01
2331 6135 7.121759 TGAATTTTTCTTCATTTTTGGTTGCCA 59.878 29.630 0.00 0.00 30.34 4.92
2332 6136 7.479150 TGAATTTTTCTTCATTTTTGGTTGCC 58.521 30.769 0.00 0.00 30.34 4.52
2337 6142 9.442033 GAAGCTTGAATTTTTCTTCATTTTTGG 57.558 29.630 2.10 0.00 35.20 3.28
2361 6166 3.563808 GCCATAGCGTACATGGAATTGAA 59.436 43.478 13.51 0.00 44.95 2.69
2364 6169 3.492102 AGCCATAGCGTACATGGAATT 57.508 42.857 13.51 0.00 44.95 2.17
2373 6178 3.007940 AGCATCCATTTAGCCATAGCGTA 59.992 43.478 0.00 0.00 46.67 4.42
2376 6181 3.372206 CGTAGCATCCATTTAGCCATAGC 59.628 47.826 0.00 0.00 40.32 2.97
2387 6192 0.385751 CAGTCCGACGTAGCATCCAT 59.614 55.000 0.00 0.00 0.00 3.41
2389 6194 1.589196 GCAGTCCGACGTAGCATCC 60.589 63.158 8.25 0.00 0.00 3.51
2390 6195 0.661552 TAGCAGTCCGACGTAGCATC 59.338 55.000 13.58 0.00 0.00 3.91
2391 6196 0.663688 CTAGCAGTCCGACGTAGCAT 59.336 55.000 13.58 4.63 0.00 3.79
2429 6253 6.311200 CCTGCATCTAGTTTTGGTTTTATTGC 59.689 38.462 0.00 0.00 0.00 3.56
2430 6254 7.601856 TCCTGCATCTAGTTTTGGTTTTATTG 58.398 34.615 0.00 0.00 0.00 1.90
2431 6255 7.451566 ACTCCTGCATCTAGTTTTGGTTTTATT 59.548 33.333 0.00 0.00 0.00 1.40
2432 6256 6.948309 ACTCCTGCATCTAGTTTTGGTTTTAT 59.052 34.615 0.00 0.00 0.00 1.40
2433 6257 6.303839 ACTCCTGCATCTAGTTTTGGTTTTA 58.696 36.000 0.00 0.00 0.00 1.52
2434 6258 5.140454 ACTCCTGCATCTAGTTTTGGTTTT 58.860 37.500 0.00 0.00 0.00 2.43
2438 6262 8.682936 ATTTATACTCCTGCATCTAGTTTTGG 57.317 34.615 1.62 0.00 0.00 3.28
2472 6300 2.439507 AGATCAAGGCCCATTATCACGT 59.560 45.455 0.00 0.00 0.00 4.49
2488 6316 3.316588 GCGATCACAACCTAGAGAGATCA 59.683 47.826 13.28 0.00 33.33 2.92
2489 6317 3.568007 AGCGATCACAACCTAGAGAGATC 59.432 47.826 0.00 0.00 0.00 2.75
2582 6410 2.504175 GAGTCACCAGGGCCTGTTAATA 59.496 50.000 30.68 9.73 0.00 0.98
2631 10248 5.597182 TGAACTGTCTATATAGGGTGGTCAC 59.403 44.000 9.89 0.00 0.00 3.67
2698 10315 2.731572 TCACGTCCTAAACCTAGGGAG 58.268 52.381 14.81 7.17 44.54 4.30
2701 10318 2.364647 GGGATCACGTCCTAAACCTAGG 59.635 54.545 7.41 7.41 46.91 3.02
2794 10411 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
2795 10412 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
2796 10413 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
2797 10414 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
2798 10415 7.224522 TCCCTCCGTAAACTAATATAAGAGC 57.775 40.000 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.