AutoCloner

Multiple sequence alignment - TraesCS6A01G075700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G075700	chr6A	100.000	3343	0	0	1	3343	45984061	45980719	0.000000e+00	6174.0
1	TraesCS6A01G075700	chr6A	90.831	1756	97	29	1619	3343	46119307	46117585	0.000000e+00	2292.0
2	TraesCS6A01G075700	chr6A	90.831	1756	97	29	1619	3343	46147426	46145704	0.000000e+00	2292.0
3	TraesCS6A01G075700	chr6A	85.329	1704	175	45	554	2217	45752343	45754011	0.000000e+00	1692.0
4	TraesCS6A01G075700	chr6A	90.643	855	49	9	2506	3343	45868872	45869712	0.000000e+00	1107.0
5	TraesCS6A01G075700	chr6A	87.735	799	81	9	825	1608	45863229	45864025	0.000000e+00	917.0
6	TraesCS6A01G075700	chr6A	90.868	657	60	0	975	1631	46149356	46148700	0.000000e+00	881.0
7	TraesCS6A01G075700	chr6A	92.021	564	40	4	1	563	46121703	46121144	0.000000e+00	787.0
8	TraesCS6A01G075700	chr6A	92.021	564	40	4	1	563	46150709	46150150	0.000000e+00	787.0
9	TraesCS6A01G075700	chr6A	93.088	434	27	2	1601	2034	45864250	45864680	1.690000e-177	632.0
10	TraesCS6A01G075700	chr6A	86.071	560	56	12	1	545	45751254	45751806	1.730000e-162	582.0
11	TraesCS6A01G075700	chr6A	91.117	394	35	0	975	1368	46120346	46119953	4.910000e-148	534.0
12	TraesCS6A01G075700	chr6A	84.866	522	29	18	558	1040	46149876	46149366	6.490000e-132	481.0
13	TraesCS6A01G075700	chr6A	87.824	386	23	2	2032	2417	45868213	45868574	6.630000e-117	431.0
14	TraesCS6A01G075700	chr6A	88.506	348	19	9	703	1040	46120692	46120356	5.200000e-108	401.0
15	TraesCS6A01G075700	chr6A	83.117	462	54	13	329	785	45861021	45861463	1.870000e-107	399.0
16	TraesCS6A01G075700	chr6A	84.211	437	37	14	2769	3180	45754994	45755423	2.420000e-106	396.0
17	TraesCS6A01G075700	chr6A	80.499	441	49	16	2287	2700	45754534	45754964	1.510000e-78	303.0
18	TraesCS6A01G075700	chr6A	90.071	141	10	3	558	694	46120870	46120730	2.650000e-41	180.0
19	TraesCS6A01G075700	chr6B	89.699	3019	200	44	375	3343	79304086	79301129	0.000000e+00	3749.0
20	TraesCS6A01G075700	chr6B	85.494	1882	166	46	879	2709	78617567	78619392	0.000000e+00	1864.0
21	TraesCS6A01G075700	chr6B	89.280	1306	88	28	1664	2938	79338007	79336723	0.000000e+00	1589.0
22	TraesCS6A01G075700	chr6B	92.541	791	50	4	879	1668	79344017	79343235	0.000000e+00	1125.0
23	TraesCS6A01G075700	chr6B	85.614	994	95	28	1	961	78616619	78617597	0.000000e+00	1000.0
24	TraesCS6A01G075700	chr6B	87.860	799	82	11	1	792	79349839	79349049	0.000000e+00	924.0
25	TraesCS6A01G075700	chr6B	85.576	825	80	20	1	816	79346083	79345289	0.000000e+00	828.0
26	TraesCS6A01G075700	chr6B	84.954	545	48	6	2758	3274	78619409	78619947	3.820000e-144	521.0
27	TraesCS6A01G075700	chr6B	75.974	462	74	21	2193	2642	60089898	60089462	1.570000e-48	204.0
28	TraesCS6A01G075700	chr6B	97.500	40	1	0	781	820	79349046	79349007	5.980000e-08	69.4
29	TraesCS6A01G075700	chrUn	85.112	2774	269	61	1	2708	27975571	27972876	0.000000e+00	2702.0
30	TraesCS6A01G075700	chrUn	92.067	1853	109	20	714	2544	27871718	27873554	0.000000e+00	2573.0
31	TraesCS6A01G075700	chrUn	90.831	1756	97	29	1619	3343	314027747	314026025	0.000000e+00	2292.0
32	TraesCS6A01G075700	chrUn	94.286	490	28	0	1179	1668	327369383	327368894	0.000000e+00	750.0
33	TraesCS6A01G075700	chrUn	93.878	490	30	0	1179	1668	327372390	327371901	0.000000e+00	739.0
34	TraesCS6A01G075700	chrUn	90.026	391	22	3	2969	3343	27873577	27873966	1.080000e-134	490.0
35	TraesCS6A01G075700	chrUn	85.319	361	36	4	2931	3274	27972660	27972300	1.140000e-94	357.0
36	TraesCS6A01G075700	chrUn	88.000	175	18	2	2764	2938	27972853	27972682	1.570000e-48	204.0
37	TraesCS6A01G075700	chr7A	86.811	417	53	2	26	442	532474871	532474457	6.530000e-127	464.0
38	TraesCS6A01G075700	chr7B	86.331	417	52	5	26	442	524776451	524776040	1.830000e-122	449.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G075700	chr6A	45980719	45984061	3342	True	6174.000000	6174	100.000000	1	3343	1	chr6A.!!$R1	3342
1	TraesCS6A01G075700	chr6A	46145704	46150709	5005	True	1110.250000	2292	89.646500	1	3343	4	chr6A.!!$R3	3342
2	TraesCS6A01G075700	chr6A	46117585	46121703	4118	True	838.800000	2292	90.509200	1	3343	5	chr6A.!!$R2	3342
3	TraesCS6A01G075700	chr6A	45751254	45755423	4169	False	743.250000	1692	84.027500	1	3180	4	chr6A.!!$F1	3179
4	TraesCS6A01G075700	chr6A	45861021	45869712	8691	False	697.200000	1107	88.481400	329	3343	5	chr6A.!!$F2	3014
5	TraesCS6A01G075700	chr6B	79301129	79304086	2957	True	3749.000000	3749	89.699000	375	3343	1	chr6B.!!$R2	2968
6	TraesCS6A01G075700	chr6B	79336723	79338007	1284	True	1589.000000	1589	89.280000	1664	2938	1	chr6B.!!$R3	1274
7	TraesCS6A01G075700	chr6B	78616619	78619947	3328	False	1128.333333	1864	85.354000	1	3274	3	chr6B.!!$F1	3273
8	TraesCS6A01G075700	chr6B	79343235	79349839	6604	True	736.600000	1125	90.869250	1	1668	4	chr6B.!!$R4	1667
9	TraesCS6A01G075700	chrUn	314026025	314027747	1722	True	2292.000000	2292	90.831000	1619	3343	1	chrUn.!!$R1	1724
10	TraesCS6A01G075700	chrUn	27871718	27873966	2248	False	1531.500000	2573	91.046500	714	3343	2	chrUn.!!$F1	2629
11	TraesCS6A01G075700	chrUn	27972300	27975571	3271	True	1087.666667	2702	86.143667	1	3274	3	chrUn.!!$R2	3273
12	TraesCS6A01G075700	chrUn	327368894	327372390	3496	True	744.500000	750	94.082000	1179	1668	2	chrUn.!!$R3	489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
973	8572	0.833834	CCCCGCATCACTCTATCCCT	60.834	60.0	0.0	0.0	0.0	4.2	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2458	16188	0.663269	CCTTCTTTCCCGCAAAACGC	60.663	55.0	0.0	0.0	41.76	4.84	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
86	88	4.760530	ACCATGTGCTATCTGCTAAAGA	57.239	40.909	0.00	0.00	43.37	2.52
134	145	1.130955	GCACAAACAATCGGTTGCAG	58.869	50.000	8.70	0.81	40.35	4.41
217	228	3.052082	CAGGTCCAGCGGCAACAG	61.052	66.667	1.45	0.00	0.00	3.16
273	287	4.780815	TCCCTTATACCTCATTTGTGCAG	58.219	43.478	0.00	0.00	0.00	4.41
420	446	8.398878	ACCTTGGTTGAATCGTAAATAAAGAA	57.601	30.769	0.00	0.00	0.00	2.52
653	1490	1.971695	GGACAAGCCAAAGGGGACG	60.972	63.158	0.00	0.00	40.01	4.79
655	1492	2.115266	CAAGCCAAAGGGGACGGT	59.885	61.111	0.00	0.00	40.01	4.83
660	1497	1.133419	AGCCAAAGGGGACGGTTTTTA	60.133	47.619	0.00	0.00	40.01	1.52
661	1498	1.000060	GCCAAAGGGGACGGTTTTTAC	60.000	52.381	0.00	0.00	40.01	2.01
664	1501	3.057104	CCAAAGGGGACGGTTTTTACATC	60.057	47.826	0.00	0.00	40.01	3.06
680	1521	7.639113	TTTTACATCTTATGGATTCCACACC	57.361	36.000	7.76	0.00	35.80	4.16
748	1620	3.643159	ATTCCACAGCCGAAGTTTTTC	57.357	42.857	0.00	0.00	0.00	2.29
820	3451	3.964875	CACAACACAGCGTGGGCC	61.965	66.667	12.18	0.00	41.24	5.80
845	3487	1.227527	CCAAGACACCACAGCGTGA	60.228	57.895	9.75	0.00	37.20	4.35
892	8467	3.000080	CTCGCCGCGTCAGTTTCAC	62.000	63.158	13.39	0.00	0.00	3.18
898	8473	1.329292	CCGCGTCAGTTTCACTTTCAA	59.671	47.619	4.92	0.00	0.00	2.69
899	8474	2.363220	CGCGTCAGTTTCACTTTCAAC	58.637	47.619	0.00	0.00	0.00	3.18
900	8475	2.222931	CGCGTCAGTTTCACTTTCAACA	60.223	45.455	0.00	0.00	0.00	3.33
949	8537	3.316308	CCCCACTTCAGTTTCAGTTTCAG	59.684	47.826	0.00	0.00	0.00	3.02
971	8570	1.674057	CCCCCGCATCACTCTATCC	59.326	63.158	0.00	0.00	0.00	2.59
972	8571	1.674057	CCCCGCATCACTCTATCCC	59.326	63.158	0.00	0.00	0.00	3.85
973	8572	0.833834	CCCCGCATCACTCTATCCCT	60.834	60.000	0.00	0.00	0.00	4.20
1359	9117	4.323104	GGTCTGATGCTAATCATAGTCCCC	60.323	50.000	0.00	0.00	41.97	4.81
1368	9126	1.568504	TCATAGTCCCCAAGCGTCTT	58.431	50.000	0.00	0.00	0.00	3.01
1760	11435	4.015084	CAGTTTGATTTGGAGAGGCAGAT	58.985	43.478	0.00	0.00	0.00	2.90
1828	11503	1.001517	TTCAAGCTTATGCGGGCCA	60.002	52.632	4.39	0.00	45.42	5.36
2022	11713	1.963515	GGGTTTGCAGAGGACAACAAT	59.036	47.619	0.00	0.00	0.00	2.71
2046	15272	5.012046	TGTGGTACTCATGGATATGCTAAGG	59.988	44.000	0.00	0.00	34.21	2.69
2074	15300	4.220602	TCTTCATGATCCAACTCGACTCAA	59.779	41.667	0.00	0.00	0.00	3.02
2240	15589	7.504924	TCGATAATTGGTTGATGGAAATACC	57.495	36.000	0.00	0.00	39.54	2.73
2273	15941	5.567915	GCTTCCGTGTTAAGTTAGCAATTTC	59.432	40.000	0.52	0.00	0.00	2.17
2289	15987	6.456501	AGCAATTTCAAGTAGTCTCGTAACT	58.543	36.000	0.00	0.00	0.00	2.24
2355	16057	1.584483	CGATGATGTGCTTTGCGGC	60.584	57.895	0.00	0.00	0.00	6.53
2357	16059	1.016627	GATGATGTGCTTTGCGGCTA	58.983	50.000	0.00	0.00	0.00	3.93
2485	16216	2.418083	GGGAAAGAAGGGCGCATGG	61.418	63.158	10.83	0.00	0.00	3.66
2584	16552	0.330267	CCCTCCCGTACAAACCCATT	59.670	55.000	0.00	0.00	0.00	3.16
2653	16621	4.426313	CGGAGGCCCACTTTCCCC	62.426	72.222	0.00	0.00	0.00	4.81
2682	16650	4.129380	TCATCGCACTCAGGATTAAATGG	58.871	43.478	0.00	0.00	0.00	3.16
2727	16701	5.852827	ACAATGGATTTTTGTTACTGGTGG	58.147	37.500	0.00	0.00	33.64	4.61
2752	16726	8.645110	GGCTACCAGTGGTATCTAATTTACTTA	58.355	37.037	22.33	0.00	37.56	2.24
2753	16727	9.473640	GCTACCAGTGGTATCTAATTTACTTAC	57.526	37.037	22.33	0.00	37.56	2.34
2805	16795	2.906389	TGGTTCAAGTCAGACCTAGCAT	59.094	45.455	0.00	0.00	0.00	3.79
2810	16800	5.282055	TCAAGTCAGACCTAGCATATTGG	57.718	43.478	0.00	0.00	0.00	3.16
2811	16801	4.101585	TCAAGTCAGACCTAGCATATTGGG	59.898	45.833	0.00	0.00	0.00	4.12
2897	16887	3.431725	GCACGCAGCCCTTGTACC	61.432	66.667	0.00	0.00	37.23	3.34
2967	16998	1.001181	TCAGCCTCTTGCATTTTTGCC	59.999	47.619	0.00	0.00	44.83	4.52
3000	17031	5.066893	ACATTTCATTCTAATGCACAGCGAT	59.933	36.000	0.00	0.00	36.65	4.58
3094	17127	5.888982	ATGGATCGGATACCTACTTTTGT	57.111	39.130	0.00	0.00	0.00	2.83
3112	17145	3.367646	TGTCTACTAGTCAGGTCAGGG	57.632	52.381	0.00	0.00	0.00	4.45
3127	17160	1.077716	AGGGTATTTGCCTGCGACC	60.078	57.895	0.00	0.00	0.00	4.79
3153	17186	4.803088	TGCCGAATTGTTTTGTTCAGAAAG	59.197	37.500	0.00	0.00	0.00	2.62
3261	17312	0.915364	AAGAGGAGAAGTGCCATCCC	59.085	55.000	0.00	0.00	33.30	3.85
3270	17321	0.762461	AGTGCCATCCCTAGGAGAGC	60.762	60.000	11.48	8.19	34.05	4.09
3297	17348	1.069513	CTGTTTCGGGACACACACCTA	59.930	52.381	0.00	0.00	0.00	3.08
3310	17361	5.088730	ACACACACCTAACCTGATAACCTA	58.911	41.667	0.00	0.00	0.00	3.08

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	7.557358	AGTTCCCTGCATTTTTGAATTTTCTTT	59.443	29.630	0.00	0.00	0.00	2.52
165	176	8.765219	CCTCCTTCATTCATTGTACTTATAACG	58.235	37.037	0.00	0.00	0.00	3.18
171	182	4.273318	GCCCTCCTTCATTCATTGTACTT	58.727	43.478	0.00	0.00	0.00	2.24
177	188	2.441001	AGATCGCCCTCCTTCATTCATT	59.559	45.455	0.00	0.00	0.00	2.57
324	338	3.706600	AAACTATTACAAGACGGGCCA	57.293	42.857	4.39	0.00	0.00	5.36
364	383	5.242838	ACTTAATAAGAGAGGGATGAGCTCG	59.757	44.000	9.64	0.00	33.98	5.03
532	561	6.857777	ATTCAGAAGTCACTTCAAAGTCTG	57.142	37.500	19.89	7.89	42.37	3.51
653	1490	7.973944	GTGTGGAATCCATAAGATGTAAAAACC	59.026	37.037	4.81	0.00	35.28	3.27
655	1492	7.671819	TGGTGTGGAATCCATAAGATGTAAAAA	59.328	33.333	4.81	0.00	35.28	1.94
660	1497	4.228210	ACTGGTGTGGAATCCATAAGATGT	59.772	41.667	4.81	0.00	35.28	3.06
661	1498	4.577693	CACTGGTGTGGAATCCATAAGATG	59.422	45.833	4.81	0.00	40.33	2.90
664	1501	4.220693	TCACTGGTGTGGAATCCATAAG	57.779	45.455	4.81	0.32	43.94	1.73
712	1582	5.070001	TGTGGAATTGTCTACCTTTTCTGG	58.930	41.667	0.00	0.00	34.44	3.86
820	3451	1.302832	GTGGTGTCTTGGGCTGGAG	60.303	63.158	0.00	0.00	0.00	3.86
845	3487	1.760613	TGAAAATATCGGTCGGGAGCT	59.239	47.619	0.00	0.00	0.00	4.09
854	3496	3.338249	AGATGCGGGATGAAAATATCGG	58.662	45.455	0.00	0.00	0.00	4.18
892	8467	2.903547	CGGTGCGGGGTGTTGAAAG	61.904	63.158	0.00	0.00	0.00	2.62
957	8556	1.001406	GGGAAGGGATAGAGTGATGCG	59.999	57.143	0.00	0.00	0.00	4.73
958	8557	1.001406	CGGGAAGGGATAGAGTGATGC	59.999	57.143	0.00	0.00	0.00	3.91
959	8558	1.001406	GCGGGAAGGGATAGAGTGATG	59.999	57.143	0.00	0.00	0.00	3.07
960	8559	1.343069	GCGGGAAGGGATAGAGTGAT	58.657	55.000	0.00	0.00	0.00	3.06
961	8560	0.032515	TGCGGGAAGGGATAGAGTGA	60.033	55.000	0.00	0.00	0.00	3.41
962	8561	1.001406	GATGCGGGAAGGGATAGAGTG	59.999	57.143	0.00	0.00	0.00	3.51
963	8562	1.343069	GATGCGGGAAGGGATAGAGT	58.657	55.000	0.00	0.00	0.00	3.24
964	8563	0.244994	CGATGCGGGAAGGGATAGAG	59.755	60.000	0.00	0.00	0.00	2.43
967	8566	3.466881	CCGATGCGGGAAGGGATA	58.533	61.111	0.00	0.00	44.15	2.59
1041	8792	0.889306	GTAGCAGGTTGTCGTCCTCT	59.111	55.000	0.00	0.00	32.37	3.69
1359	9117	1.000955	ACCAGTACCTGAAGACGCTTG	59.999	52.381	0.00	0.00	32.44	4.01
1368	9126	0.834687	GGTCCCACACCAGTACCTGA	60.835	60.000	0.00	0.00	45.98	3.86
1488	9246	0.603569	GAAAGTGCTCGGAGTCTCCA	59.396	55.000	19.15	5.40	35.91	3.86
1495	9253	1.371183	CCACCTGAAAGTGCTCGGA	59.629	57.895	0.00	0.00	36.38	4.55
1533	9291	0.882927	CTCGTCGGTTTTCTTGCCCA	60.883	55.000	0.00	0.00	0.00	5.36
1537	9298	1.070577	CACTGCTCGTCGGTTTTCTTG	60.071	52.381	0.00	0.00	30.14	3.02
1538	9299	1.217882	CACTGCTCGTCGGTTTTCTT	58.782	50.000	0.00	0.00	30.14	2.52
1760	11435	2.125310	CCGGCATTACGTCCAGCA	60.125	61.111	0.00	0.00	0.00	4.41
1828	11503	3.507713	CCCACCACCACCACCCTT	61.508	66.667	0.00	0.00	0.00	3.95
1896	11580	0.877649	CATCGGCATCGGTCTTCCTG	60.878	60.000	0.00	0.00	36.95	3.86
2022	11713	5.012046	CCTTAGCATATCCATGAGTACCACA	59.988	44.000	0.00	0.00	33.67	4.17
2046	15272	2.948315	GAGTTGGATCATGAAGAAGCCC	59.052	50.000	0.00	0.00	0.00	5.19
2074	15300	1.271656	GGCAAGCTTCTTGAACTGCAT	59.728	47.619	10.44	0.00	0.00	3.96
2240	15589	4.387862	ACTTAACACGGAAGCTTATGAACG	59.612	41.667	0.00	2.14	0.00	3.95
2273	15941	7.131498	AGAAGTACAGTTACGAGACTACTTG	57.869	40.000	12.45	0.00	31.77	3.16
2289	15987	5.356751	TCAAGCAGCAAAAGAAAGAAGTACA	59.643	36.000	0.00	0.00	0.00	2.90
2355	16057	1.600957	CATGCAAGCAGAACCCGATAG	59.399	52.381	0.00	0.00	0.00	2.08
2357	16059	1.033746	CCATGCAAGCAGAACCCGAT	61.034	55.000	0.00	0.00	0.00	4.18
2416	16142	5.411669	GCTTCCTTTGAAATACGGAGAGAAA	59.588	40.000	0.00	0.00	0.00	2.52
2420	16150	3.259064	CGCTTCCTTTGAAATACGGAGA	58.741	45.455	0.00	0.00	0.00	3.71
2458	16188	0.663269	CCTTCTTTCCCGCAAAACGC	60.663	55.000	0.00	0.00	41.76	4.84
2485	16216	4.510340	CGTTCATACAGCATTAGTAACCCC	59.490	45.833	0.00	0.00	0.00	4.95
2562	16530	1.297689	GGTTTGTACGGGAGGGGAC	59.702	63.158	0.00	0.00	0.00	4.46
2584	16552	2.118403	AGGAGGAAGACAAAGGGACA	57.882	50.000	0.00	0.00	0.00	4.02
2653	16621	4.313277	TCCTGAGTGCGATGATTAAGAG	57.687	45.455	0.00	0.00	0.00	2.85
2727	16701	9.473640	GTAAGTAAATTAGATACCACTGGTAGC	57.526	37.037	14.66	14.66	44.00	3.58
2752	16726	1.000274	GAAATGAGCCGCAACAAAGGT	60.000	47.619	0.00	0.00	0.00	3.50
2753	16727	1.270550	AGAAATGAGCCGCAACAAAGG	59.729	47.619	0.00	0.00	0.00	3.11
2897	16887	6.049263	AGAAGAGAAAACTAAAGCAACACG	57.951	37.500	0.00	0.00	0.00	4.49
2967	16998	6.904011	GCATTAGAATGAAATGTCAAGACGAG	59.096	38.462	6.43	0.00	38.70	4.18
3000	17031	4.595031	TGCTCACCCAAATGTGCA	57.405	50.000	0.00	0.00	44.47	4.57
3094	17127	5.728937	AATACCCTGACCTGACTAGTAGA	57.271	43.478	3.59	0.00	0.00	2.59
3112	17145	0.179200	CAACGGTCGCAGGCAAATAC	60.179	55.000	0.00	0.00	0.00	1.89
3153	17186	5.449304	AGTAAACGTGCTATTTTTCACTGC	58.551	37.500	0.00	0.00	0.00	4.40
3261	17312	0.396974	ACAGGCTCAGGCTCTCCTAG	60.397	60.000	0.00	0.00	41.93	3.02
3270	17321	1.376037	GTCCCGAAACAGGCTCAGG	60.376	63.158	0.00	0.00	0.00	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.