AutoCloner

Multiple sequence alignment - TraesCS6A01G075000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G075000	chr6A	100.000	4484	0	0	1	4484	44695469	44699952	0.000000e+00	8281.0
1	TraesCS6A01G075000	chr6A	96.157	1067	36	5	3422	4484	44845482	44846547	0.000000e+00	1738.0
2	TraesCS6A01G075000	chr6A	96.064	1067	37	5	3422	4484	44841692	44842757	0.000000e+00	1733.0
3	TraesCS6A01G075000	chr6A	96.064	1067	37	4	3422	4484	44883788	44884853	0.000000e+00	1733.0
4	TraesCS6A01G075000	chr6A	95.689	1067	38	7	3422	4484	44866668	44867730	0.000000e+00	1709.0
5	TraesCS6A01G075000	chr6A	94.494	781	35	5	164	940	44818386	44819162	0.000000e+00	1197.0
6	TraesCS6A01G075000	chr6A	97.119	243	7	0	3041	3283	44819163	44819405	1.160000e-110	411.0
7	TraesCS6A01G075000	chr6A	92.308	169	12	1	1	168	44818180	44818348	5.800000e-59	239.0
8	TraesCS6A01G075000	chr6A	95.105	143	6	1	3282	3424	44829148	44829289	1.620000e-54	224.0
9	TraesCS6A01G075000	chr6A	74.021	562	118	21	1514	2067	34690095	34689554	2.110000e-48	204.0
10	TraesCS6A01G075000	chr6A	75.385	195	37	10	167	355	15448675	15448486	2.870000e-12	84.2
11	TraesCS6A01G075000	chrUn	94.007	2970	134	22	482	3424	113111722	113108770	0.000000e+00	4458.0
12	TraesCS6A01G075000	chrUn	93.972	2024	103	8	619	2635	113160399	113158388	0.000000e+00	3044.0
13	TraesCS6A01G075000	chrUn	95.660	530	20	3	164	691	464846298	464846826	0.000000e+00	848.0
14	TraesCS6A01G075000	chrUn	95.417	480	18	4	3637	4113	71652433	71651955	0.000000e+00	761.0
15	TraesCS6A01G075000	chrUn	95.417	480	18	4	3637	4113	380337815	380338293	0.000000e+00	761.0
16	TraesCS6A01G075000	chrUn	96.875	384	12	0	3041	3424	350654415	350654032	1.050000e-180	643.0
17	TraesCS6A01G075000	chrUn	92.913	254	15	1	693	946	350654660	350654410	2.550000e-97	366.0
18	TraesCS6A01G075000	chrUn	93.204	206	13	1	3431	3636	113056936	113056732	7.290000e-78	302.0
19	TraesCS6A01G075000	chrUn	92.056	214	15	2	3422	3634	113152805	113152593	2.620000e-77	300.0
20	TraesCS6A01G075000	chrUn	75.311	563	110	23	1514	2067	102820751	102820209	4.480000e-60	243.0
21	TraesCS6A01G075000	chrUn	83.333	246	37	3	171	414	113113133	113112890	1.620000e-54	224.0
22	TraesCS6A01G075000	chrUn	97.826	92	2	0	3333	3424	113158393	113158302	4.640000e-35	159.0
23	TraesCS6A01G075000	chr6B	91.122	3289	204	46	164	3424	77612919	77616147	0.000000e+00	4375.0
24	TraesCS6A01G075000	chr6B	95.388	477	20	2	3637	4112	101244011	101243536	0.000000e+00	758.0
25	TraesCS6A01G075000	chr6B	76.520	592	114	20	1519	2096	83139172	83138592	2.620000e-77	300.0
26	TraesCS6A01G075000	chr6B	71.797	1046	215	54	1059	2067	64172417	64171415	1.620000e-54	224.0
27	TraesCS6A01G075000	chr6B	74.081	571	113	27	1508	2067	76485804	76486350	7.610000e-48	202.0
28	TraesCS6A01G075000	chr6B	85.714	140	20	0	1064	1203	83127923	83127784	1.000000e-31	148.0
29	TraesCS6A01G075000	chr6B	82.424	165	27	2	1	163	77612712	77612876	4.680000e-30	143.0
30	TraesCS6A01G075000	chr2A	94.464	849	45	2	3637	4484	42369303	42370150	0.000000e+00	1306.0
31	TraesCS6A01G075000	chr3B	88.928	858	77	15	3637	4484	762636603	762635754	0.000000e+00	1042.0
32	TraesCS6A01G075000	chr7B	85.545	505	62	8	3987	4484	291516570	291516070	6.650000e-143	518.0
33	TraesCS6A01G075000	chr7B	76.647	167	31	8	164	324	619898493	619898657	7.990000e-13	86.1
34	TraesCS6A01G075000	chr7A	85.060	502	63	10	3987	4484	127457567	127458060	6.700000e-138	501.0
35	TraesCS6A01G075000	chr2B	90.339	383	35	2	4103	4484	579995042	579994661	6.700000e-138	501.0
36	TraesCS6A01G075000	chr6D	80.829	193	21	14	164	353	452133527	452133706	2.180000e-28	137.0
37	TraesCS6A01G075000	chr6D	83.784	111	13	5	59	166	174338463	174338355	2.850000e-17	100.0
38	TraesCS6A01G075000	chr7D	83.077	130	20	2	1068	1196	611014982	611014854	2.830000e-22	117.0
39	TraesCS6A01G075000	chr7D	82.500	120	19	2	50	168	477864296	477864178	2.210000e-18	104.0
40	TraesCS6A01G075000	chr2D	84.677	124	12	4	164	284	355620665	355620784	2.830000e-22	117.0
41	TraesCS6A01G075000	chr2D	81.818	121	22	0	42	162	54083793	54083913	7.940000e-18	102.0
42	TraesCS6A01G075000	chr4A	83.636	110	18	0	59	168	555934077	555933968	2.210000e-18	104.0
43	TraesCS6A01G075000	chr4A	82.857	105	18	0	59	163	555968513	555968409	1.330000e-15	95.3
44	TraesCS6A01G075000	chr5B	87.952	83	9	1	90	172	308979445	308979526	3.690000e-16	97.1
45	TraesCS6A01G075000	chr4D	80.672	119	23	0	45	163	392217539	392217421	4.780000e-15	93.5
46	TraesCS6A01G075000	chr5A	96.000	50	2	0	169	218	28233814	28233863	1.030000e-11	82.4
47	TraesCS6A01G075000	chr3D	90.741	54	5	0	164	217	543783607	543783660	6.220000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G075000	chr6A	44695469	44699952	4483	False	8281.000000	8281	100.000000	1	4484	1	chr6A.!!$F1	4483
1	TraesCS6A01G075000	chr6A	44841692	44846547	4855	False	1735.500000	1738	96.110500	3422	4484	2	chr6A.!!$F6	1062
2	TraesCS6A01G075000	chr6A	44883788	44884853	1065	False	1733.000000	1733	96.064000	3422	4484	1	chr6A.!!$F4	1062
3	TraesCS6A01G075000	chr6A	44866668	44867730	1062	False	1709.000000	1709	95.689000	3422	4484	1	chr6A.!!$F3	1062
4	TraesCS6A01G075000	chr6A	44818180	44819405	1225	False	615.666667	1197	94.640333	1	3283	3	chr6A.!!$F5	3282
5	TraesCS6A01G075000	chr6A	34689554	34690095	541	True	204.000000	204	74.021000	1514	2067	1	chr6A.!!$R2	553
6	TraesCS6A01G075000	chrUn	113108770	113113133	4363	True	2341.000000	4458	88.670000	171	3424	2	chrUn.!!$R5	3253
7	TraesCS6A01G075000	chrUn	113158302	113160399	2097	True	1601.500000	3044	95.899000	619	3424	2	chrUn.!!$R6	2805
8	TraesCS6A01G075000	chrUn	464846298	464846826	528	False	848.000000	848	95.660000	164	691	1	chrUn.!!$F2	527
9	TraesCS6A01G075000	chrUn	350654032	350654660	628	True	504.500000	643	94.894000	693	3424	2	chrUn.!!$R7	2731
10	TraesCS6A01G075000	chrUn	102820209	102820751	542	True	243.000000	243	75.311000	1514	2067	1	chrUn.!!$R2	553
11	TraesCS6A01G075000	chr6B	77612712	77616147	3435	False	2259.000000	4375	86.773000	1	3424	2	chr6B.!!$F2	3423
12	TraesCS6A01G075000	chr6B	83138592	83139172	580	True	300.000000	300	76.520000	1519	2096	1	chr6B.!!$R3	577
13	TraesCS6A01G075000	chr6B	64171415	64172417	1002	True	224.000000	224	71.797000	1059	2067	1	chr6B.!!$R1	1008
14	TraesCS6A01G075000	chr6B	76485804	76486350	546	False	202.000000	202	74.081000	1508	2067	1	chr6B.!!$F1	559
15	TraesCS6A01G075000	chr2A	42369303	42370150	847	False	1306.000000	1306	94.464000	3637	4484	1	chr2A.!!$F1	847
16	TraesCS6A01G075000	chr3B	762635754	762636603	849	True	1042.000000	1042	88.928000	3637	4484	1	chr3B.!!$R1	847
17	TraesCS6A01G075000	chr7B	291516070	291516570	500	True	518.000000	518	85.545000	3987	4484	1	chr7B.!!$R1	497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
821	2018	0.450983	CCTAACACCTCTCCGTCGTC	59.549	60.0	0.00	0.00	0.00	4.20	F
1245	2464	0.252467	CCTCCACTGTCCTTCCCTCT	60.252	60.0	0.00	0.00	0.00	3.69	F
1471	2693	0.395862	CTCTCCCAGCCTCCTCGTTA	60.396	60.0	0.00	0.00	0.00	3.18	F
2907	4150	1.209128	AAAGAAGTGTCACGTGCTCG	58.791	50.0	11.67	6.63	43.34	5.03	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1789	3018	2.240279	CAGTCTAGGCGCCCTAACTAT	58.760	52.381	26.15	4.77	35.49	2.12	R
2974	4217	0.317160	TACCAACCACGCACTGAGAG	59.683	55.000	0.00	0.00	0.00	3.20	R
3020	4263	4.515944	ACGATAACTCTCCCAATCGAGTAG	59.484	45.833	10.21	0.00	42.88	2.57	R
3904	8939	1.373748	CGTCCACCCGATCGTTGTT	60.374	57.895	15.09	0.00	0.00	2.83	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	41	4.131088	GAGACGACGGAGCCCCAC	62.131	72.222	0.00	0.00	0.00	4.61
83	86	1.342076	ACGAGGAAGAGTAGGGCATGA	60.342	52.381	0.00	0.00	0.00	3.07
88	91	5.022227	AGGAAGAGTAGGGCATGAGATAT	57.978	43.478	0.00	0.00	0.00	1.63
113	116	3.065306	CCTTGAGTACCGTGGGCA	58.935	61.111	0.00	0.00	0.00	5.36
153	156	2.823147	CTACCTCGACGGCGACCT	60.823	66.667	10.67	0.00	42.51	3.85
165	210	3.148084	CGACCTGACCAACACCCT	58.852	61.111	0.00	0.00	0.00	4.34
186	235	1.669779	GACGAGCTCCGCTTAGAGTAA	59.330	52.381	8.47	0.00	39.88	2.24
313	364	3.361158	CATGTGCGGGCGTTTGGA	61.361	61.111	0.00	0.00	0.00	3.53
345	396	1.467342	GGCAATGTTCCGGTTGTAGAC	59.533	52.381	0.00	0.00	0.00	2.59
380	431	5.289595	CCCATTTGCAATCTTGATGATCTG	58.710	41.667	0.00	0.00	33.57	2.90
703	1886	0.606096	TCACGGCTCAGGAATCGAAA	59.394	50.000	0.00	0.00	0.00	3.46
722	1905	1.953559	ATGCGACACACTGACAAACT	58.046	45.000	0.00	0.00	0.00	2.66
758	1941	1.274703	GCAGGGGGATCAGAAGTCCA	61.275	60.000	0.00	0.00	37.49	4.02
775	1958	0.679505	CCAAACTCCCGAGTGACAGA	59.320	55.000	0.00	0.00	41.58	3.41
821	2018	0.450983	CCTAACACCTCTCCGTCGTC	59.549	60.000	0.00	0.00	0.00	4.20
978	2182	4.327854	CGAATTTTATCGCCCAGATAGC	57.672	45.455	0.00	0.00	42.29	2.97
981	2185	1.429930	TTTATCGCCCAGATAGCCCA	58.570	50.000	0.00	0.00	42.29	5.36
982	2186	1.429930	TTATCGCCCAGATAGCCCAA	58.570	50.000	0.00	0.00	42.29	4.12
983	2187	1.429930	TATCGCCCAGATAGCCCAAA	58.570	50.000	0.00	0.00	40.66	3.28
1056	2260	2.528743	CGGCAAGCGCGATCAGATT	61.529	57.895	12.10	0.00	39.92	2.40
1120	2324	1.905843	ATCATCTCGCTCCTCCCCG	60.906	63.158	0.00	0.00	0.00	5.73
1128	2332	3.049080	GCTCCTCCCCGCAAAGGAT	62.049	63.158	0.00	0.00	45.00	3.24
1245	2464	0.252467	CCTCCACTGTCCTTCCCTCT	60.252	60.000	0.00	0.00	0.00	3.69
1329	2548	2.815308	GATGACCTGGACGCCGAT	59.185	61.111	0.00	0.00	0.00	4.18
1428	2647	7.227156	GCTTCCCTGGATATAATCAAGAGAAA	58.773	38.462	0.00	0.00	28.23	2.52
1471	2693	0.395862	CTCTCCCAGCCTCCTCGTTA	60.396	60.000	0.00	0.00	0.00	3.18
1620	2846	4.262036	CGTGCCTTGGAGAGCTTATACATA	60.262	45.833	0.00	0.00	0.00	2.29
1670	2896	2.666994	GTGTTAGCTCGCCAACTCTTAC	59.333	50.000	0.00	0.00	0.00	2.34
1789	3018	7.444487	ACTCTGATGATTGTGCTACTATACGTA	59.556	37.037	0.00	0.00	0.00	3.57
1844	3073	1.390565	ATCTTACCCGTCGTCTCCAG	58.609	55.000	0.00	0.00	0.00	3.86
2043	3283	3.780925	CGGAGTTCGTAACGTCCTT	57.219	52.632	0.00	0.00	36.23	3.36
2045	3285	3.201726	CGGAGTTCGTAACGTCCTTAA	57.798	47.619	0.00	0.00	36.23	1.85
2077	3317	9.073475	TCCCCTATTTGGAAAAATTATACATCG	57.927	33.333	0.00	0.00	38.35	3.84
2108	3348	7.597386	AGTACTCATCTTTTCCTTTTGATTGC	58.403	34.615	0.00	0.00	0.00	3.56
2271	3511	7.878644	GTGTTTCTAGGAGACCTGAAAGTTTAT	59.121	37.037	12.14	0.00	34.21	1.40
2355	3595	3.446873	AGACATGCAAAACAAAGTCACCA	59.553	39.130	0.00	0.00	38.91	4.17
2379	3619	9.394477	CCAAACAAGTTACAAGCTCTATTTTAC	57.606	33.333	0.00	0.00	0.00	2.01
2548	3788	8.832735	TGTAAATAAGTAGACTGAATTTCCCCT	58.167	33.333	6.55	0.00	0.00	4.79
2746	3988	3.209410	AGAGGCATCCATCAAATTCGAC	58.791	45.455	0.00	0.00	0.00	4.20
2907	4150	1.209128	AAAGAAGTGTCACGTGCTCG	58.791	50.000	11.67	6.63	43.34	5.03
2937	4180	5.579119	AGATACGCAAATGACACGTTAATGA	59.421	36.000	0.58	0.00	40.99	2.57
2974	4217	2.027192	TGCTCCCTACTTTGACACATCC	60.027	50.000	0.00	0.00	0.00	3.51
3174	4418	3.055530	ACTCAGTGTGAATGGATGGACTC	60.056	47.826	0.00	0.00	0.00	3.36
3266	4510	8.246180	CCACTTTAAGAGCAATACAATGTCAAT	58.754	33.333	0.00	0.00	0.00	2.57
3399	4643	7.177878	AGGAGAATAAGAAAAATGAGCCTCAA	58.822	34.615	0.00	0.00	0.00	3.02
3406	4650	7.951347	AAGAAAAATGAGCCTCAATATGACT	57.049	32.000	0.00	0.00	0.00	3.41
3424	4668	6.653526	ATGACTCACCACATCAAATTGAAA	57.346	33.333	0.00	0.00	0.00	2.69
3425	4669	6.462552	TGACTCACCACATCAAATTGAAAA	57.537	33.333	0.00	0.00	0.00	2.29
3426	4670	6.871844	TGACTCACCACATCAAATTGAAAAA	58.128	32.000	0.00	0.00	0.00	1.94
3429	4673	7.330262	ACTCACCACATCAAATTGAAAAACTT	58.670	30.769	0.00	0.00	0.00	2.66
3439	4683	8.133754	TCAAATTGAAAAACTTCATTCAGCTG	57.866	30.769	7.63	7.63	36.93	4.24
3814	8849	2.031683	GTGAGTTTGTTCACGACTTGGG	59.968	50.000	0.00	0.00	38.23	4.12
4036	9071	0.318955	CAGTTGGGCCTCGCAAAAAG	60.319	55.000	4.53	0.00	37.99	2.27
4039	9074	0.753479	TTGGGCCTCGCAAAAAGACA	60.753	50.000	4.53	0.00	33.52	3.41
4132	9170	3.587506	ACTTGGTATACAGAGCCTGGTTT	59.412	43.478	5.01	0.00	35.51	3.27
4325	9364	0.708209	TCAGTACCCCCAGCTGACTA	59.292	55.000	17.39	0.00	34.72	2.59

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	39	1.000843	TCCAGAACCATCACTGTCGTG	59.999	52.381	0.00	0.00	42.59	4.35
38	40	1.000955	GTCCAGAACCATCACTGTCGT	59.999	52.381	0.00	0.00	32.93	4.34
39	41	1.273606	AGTCCAGAACCATCACTGTCG	59.726	52.381	0.00	0.00	32.93	4.35
40	42	2.354203	GGAGTCCAGAACCATCACTGTC	60.354	54.545	3.60	0.00	32.93	3.51
48	51	0.679505	CTCGTTGGAGTCCAGAACCA	59.320	55.000	12.67	0.00	33.81	3.67
83	86	0.107456	CTCAAGGCGCCACCATATCT	59.893	55.000	31.54	0.76	43.14	1.98
88	91	2.345991	GTACTCAAGGCGCCACCA	59.654	61.111	31.54	10.38	43.14	4.17
153	156	1.745890	CTCGTCAGGGTGTTGGTCA	59.254	57.895	0.00	0.00	0.00	4.02
220	269	7.254387	CCACAACGACAAACATCATTTCAAATT	60.254	33.333	0.00	0.00	0.00	1.82
307	358	0.246360	CCAAAATCCGGCCTCCAAAC	59.754	55.000	0.00	0.00	0.00	2.93
331	382	0.243095	AGAGCGTCTACAACCGGAAC	59.757	55.000	9.46	0.00	0.00	3.62
674	1857	2.426522	CTGAGCCGTGATTTCTTTCCA	58.573	47.619	0.00	0.00	0.00	3.53
703	1886	1.953559	AGTTTGTCAGTGTGTCGCAT	58.046	45.000	0.00	0.00	0.00	4.73
722	1905	4.141482	CCCCTGCTTGCTATTACTTTCCTA	60.141	45.833	0.00	0.00	0.00	2.94
758	1941	1.341531	CACTCTGTCACTCGGGAGTTT	59.658	52.381	0.00	0.00	40.20	2.66
1027	2231	3.545481	CTTGCCGCTACGCTCGTG	61.545	66.667	5.05	0.00	0.00	4.35
1156	2360	2.564721	GCCAGAGTTTGTGCCACCC	61.565	63.158	0.00	0.00	0.00	4.61
1158	2362	2.639286	CGCCAGAGTTTGTGCCAC	59.361	61.111	0.00	0.00	0.00	5.01
1163	2367	2.357517	CGGAGCGCCAGAGTTTGT	60.358	61.111	7.44	0.00	0.00	2.83
1329	2548	0.694771	AATGGAACCAGCTCTCTGCA	59.305	50.000	0.00	0.00	45.94	4.41
1428	2647	2.584608	GCGGATGGTGGCAGTAGT	59.415	61.111	0.00	0.00	0.00	2.73
1471	2693	6.110707	GGAAATCACAATGGCTGATTTTGAT	58.889	36.000	12.08	8.03	44.67	2.57
1510	2736	3.747852	TCAGGAGGGGGAAATTCATAGT	58.252	45.455	0.00	0.00	0.00	2.12
1512	2738	3.117512	GCTTCAGGAGGGGGAAATTCATA	60.118	47.826	0.00	0.00	0.00	2.15
1620	2846	1.359848	CCGTAGCACGAATTTCAGCT	58.640	50.000	15.11	15.11	46.05	4.24
1670	2896	3.673809	GCTATTACGGAAGCCAATACTCG	59.326	47.826	0.00	0.00	32.40	4.18
1789	3018	2.240279	CAGTCTAGGCGCCCTAACTAT	58.760	52.381	26.15	4.77	35.49	2.12
1844	3073	6.534793	GCTACGTACCTGAGATACTAGTATCC	59.465	46.154	30.71	23.64	42.13	2.59
2043	3283	7.514473	AATTTTTCCAAATAGGGGAACCACTTA	59.486	33.333	0.00	0.00	43.81	2.24
2045	3285	5.849475	AATTTTTCCAAATAGGGGAACCACT	59.151	36.000	0.11	0.11	43.81	4.00
2077	3317	9.665264	CAAAAGGAAAAGATGAGTACTTACAAC	57.335	33.333	0.00	0.00	0.00	3.32
2137	3377	3.745799	TCAACGTGGAGGCTCAAAATAA	58.254	40.909	17.69	0.00	0.00	1.40
2379	3619	7.068839	ACTCCACATGTCTATTGTACCTCTAAG	59.931	40.741	0.00	0.00	0.00	2.18
2419	3659	3.282021	AGGTCATGTGTGTAATGCATCC	58.718	45.455	0.00	0.00	0.00	3.51
2548	3788	5.133941	GGGTGTACATAGTGAGATCTGAGA	58.866	45.833	0.00	0.00	0.00	3.27
2779	4022	9.203421	TGCACAACCTATATAAGTTATGAATCG	57.797	33.333	6.67	0.00	0.00	3.34
2857	4100	7.410174	ACTATTCTCCCCACATTTTATGTTCA	58.590	34.615	0.00	0.00	42.70	3.18
2974	4217	0.317160	TACCAACCACGCACTGAGAG	59.683	55.000	0.00	0.00	0.00	3.20
3020	4263	4.515944	ACGATAACTCTCCCAATCGAGTAG	59.484	45.833	10.21	0.00	42.88	2.57
3174	4418	6.185399	CGCCAGAACTAAAAATCGTTGATAG	58.815	40.000	0.00	0.00	0.00	2.08
3399	4643	7.943079	TTCAATTTGATGTGGTGAGTCATAT	57.057	32.000	0.00	0.00	0.00	1.78
3406	4650	7.326454	TGAAGTTTTTCAATTTGATGTGGTGA	58.674	30.769	0.00	0.00	40.26	4.02
3439	4683	7.810759	TGTTACTTTGGTGAAGTTTTTCAGTTC	59.189	33.333	0.00	0.00	46.34	3.01
3445	4689	5.867174	GCTGTGTTACTTTGGTGAAGTTTTT	59.133	36.000	0.00	0.00	46.34	1.94
3533	8567	2.226437	GCGTGTGACTGGATTGAATGTT	59.774	45.455	0.00	0.00	0.00	2.71
3534	8568	1.806542	GCGTGTGACTGGATTGAATGT	59.193	47.619	0.00	0.00	0.00	2.71
3550	8584	2.886081	AGCTAGACAGATGAAAGCGTG	58.114	47.619	0.00	0.00	38.23	5.34
3620	8654	5.221106	GCACCAACACATAGCATATGAATGT	60.221	40.000	6.97	12.04	35.38	2.71
3751	8786	7.719871	TTCAGCTAGGAATCAACTACTTAGT	57.280	36.000	0.00	0.00	38.39	2.24
3814	8849	8.964772	TCTAACAGAAAGTCCAAGTATACTACC	58.035	37.037	5.65	0.00	0.00	3.18
3904	8939	1.373748	CGTCCACCCGATCGTTGTT	60.374	57.895	15.09	0.00	0.00	2.83
4036	9071	4.152580	GGAGAAAGGAAGACGAACATTGTC	59.847	45.833	0.00	0.00	36.60	3.18
4039	9074	4.625607	AGGAGAAAGGAAGACGAACATT	57.374	40.909	0.00	0.00	0.00	2.71
4132	9170	2.125147	CGATTCGCCTCCAGCCAA	60.125	61.111	0.00	0.00	38.78	4.52
4157	9195	5.361285	GTGACTGATCTCCCATTACTACACT	59.639	44.000	0.00	0.00	0.00	3.55
4164	9202	2.693591	GTCGGTGACTGATCTCCCATTA	59.306	50.000	0.00	0.00	35.40	1.90
4325	9364	4.568956	GCCCACAACTGATAATTGCTTTT	58.431	39.130	0.00	0.00	0.00	2.27
4382	9423	2.186903	GGTGATCGCCGACCACAT	59.813	61.111	14.55	0.00	32.79	3.21

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.