Multiple sequence alignment - TraesCS6A01G074600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G074600 chr6A 100.000 6564 0 0 1 6564 42921566 42928129 0.000000e+00 12122.0
1 TraesCS6A01G074600 chr6A 78.819 288 46 12 2749 3029 491008859 491009138 5.230000e-41 180.0
2 TraesCS6A01G074600 chr6A 98.701 77 1 0 4971 5047 42926460 42926536 3.190000e-28 137.0
3 TraesCS6A01G074600 chr6A 98.701 77 1 0 4895 4971 42926536 42926612 3.190000e-28 137.0
4 TraesCS6A01G074600 chrUn 93.590 2262 89 16 2750 4971 104868678 104866433 0.000000e+00 3323.0
5 TraesCS6A01G074600 chrUn 92.700 1822 99 16 948 2748 104870694 104868886 0.000000e+00 2597.0
6 TraesCS6A01G074600 chrUn 91.568 676 24 14 4971 5613 104866509 104865834 0.000000e+00 902.0
7 TraesCS6A01G074600 chrUn 85.311 354 47 3 6213 6561 104848215 104847862 1.740000e-95 361.0
8 TraesCS6A01G074600 chrUn 84.459 296 24 10 5930 6217 104865714 104865433 8.390000e-69 272.0
9 TraesCS6A01G074600 chr6B 93.081 2269 100 18 2749 4971 76858515 76860772 0.000000e+00 3267.0
10 TraesCS6A01G074600 chr6B 90.276 1810 134 21 959 2748 76856417 76858204 0.000000e+00 2329.0
11 TraesCS6A01G074600 chr6B 90.481 935 63 11 4971 5882 76860696 76861627 0.000000e+00 1210.0
12 TraesCS6A01G074600 chr6B 87.185 437 39 9 6136 6564 76862670 76863097 1.280000e-131 481.0
13 TraesCS6A01G074600 chr6B 77.297 185 41 1 2423 2607 698038027 698037844 2.500000e-19 108.0
14 TraesCS6A01G074600 chr1A 96.499 914 27 5 1 911 12163915 12164826 0.000000e+00 1506.0
15 TraesCS6A01G074600 chr1A 77.816 293 52 9 2749 3035 586042450 586042165 1.130000e-37 169.0
16 TraesCS6A01G074600 chr1A 77.133 293 54 10 2749 3035 279844253 279843968 2.450000e-34 158.0
17 TraesCS6A01G074600 chr5B 89.549 1043 75 12 3058 4079 418813658 418812629 0.000000e+00 1291.0
18 TraesCS6A01G074600 chr5B 85.087 1207 121 17 1125 2306 418814844 418813672 0.000000e+00 1177.0
19 TraesCS6A01G074600 chr5B 84.859 568 48 17 4437 4971 418812152 418811590 7.490000e-149 538.0
20 TraesCS6A01G074600 chr5B 83.668 349 24 15 4977 5321 418811660 418811341 1.380000e-76 298.0
21 TraesCS6A01G074600 chr5B 91.892 148 6 3 4287 4428 418812482 418812335 1.120000e-47 202.0
22 TraesCS6A01G074600 chr5B 85.057 87 6 3 4210 4290 706306879 706306964 1.520000e-11 82.4
23 TraesCS6A01G074600 chr5D 89.228 1049 74 12 3058 4079 354503094 354502058 0.000000e+00 1275.0
24 TraesCS6A01G074600 chr5D 86.445 723 48 26 4287 4971 354501855 354501145 0.000000e+00 747.0
25 TraesCS6A01G074600 chr5D 87.263 581 45 8 1728 2306 354503661 354503108 2.580000e-178 636.0
26 TraesCS6A01G074600 chr5D 83.788 586 64 15 1125 1686 354504235 354503657 1.620000e-145 527.0
27 TraesCS6A01G074600 chr5D 88.169 355 24 8 4971 5321 354501221 354500881 2.200000e-109 407.0
28 TraesCS6A01G074600 chr5A 85.418 1207 117 24 1125 2306 455467382 455466210 0.000000e+00 1199.0
29 TraesCS6A01G074600 chr5A 85.180 722 56 26 4287 4970 455464754 455464046 0.000000e+00 693.0
30 TraesCS6A01G074600 chr5A 86.697 436 27 11 3058 3479 455466196 455465778 7.760000e-124 455.0
31 TraesCS6A01G074600 chr5A 90.033 301 26 2 3790 4086 455465250 455464950 2.870000e-103 387.0
32 TraesCS6A01G074600 chr5A 86.275 357 26 12 4971 5321 455464120 455463781 3.740000e-97 366.0
33 TraesCS6A01G074600 chr5A 91.322 242 11 1 3532 3763 455465490 455465249 8.210000e-84 322.0
34 TraesCS6A01G074600 chr5A 77.821 257 50 5 2749 3000 15358760 15359014 1.140000e-32 152.0
35 TraesCS6A01G074600 chr6D 87.419 922 78 26 1 911 13178573 13179467 0.000000e+00 1026.0
36 TraesCS6A01G074600 chr2A 92.254 710 22 13 236 915 172288653 172289359 0.000000e+00 976.0
37 TraesCS6A01G074600 chr2A 74.545 440 46 25 5357 5771 19608773 19609171 1.490000e-26 132.0
38 TraesCS6A01G074600 chr1B 84.233 926 94 28 1 918 138845738 138846619 0.000000e+00 854.0
39 TraesCS6A01G074600 chr1B 85.714 392 51 4 22 411 328819530 328819142 6.130000e-110 409.0
40 TraesCS6A01G074600 chr7B 83.698 914 87 40 1 911 25582819 25583673 0.000000e+00 806.0
41 TraesCS6A01G074600 chr7D 81.818 891 107 32 32 912 1686148 1685303 0.000000e+00 697.0
42 TraesCS6A01G074600 chr7D 87.097 434 46 10 1 429 113983070 113982642 3.560000e-132 483.0
43 TraesCS6A01G074600 chr7D 84.466 412 56 8 1 411 45064398 45063994 3.690000e-107 399.0
44 TraesCS6A01G074600 chr7D 77.934 426 80 14 2325 2744 466061753 466062170 3.040000e-63 254.0
45 TraesCS6A01G074600 chr7D 75.117 426 95 11 2323 2744 543635183 543635601 8.690000e-44 189.0
46 TraesCS6A01G074600 chr7D 86.585 82 9 2 4210 4290 566231046 566230966 9.070000e-14 89.8
47 TraesCS6A01G074600 chr7D 84.043 94 7 3 4205 4291 419793107 419793199 4.220000e-12 84.2
48 TraesCS6A01G074600 chr7A 80.419 955 103 42 1 911 490116216 490115302 0.000000e+00 651.0
49 TraesCS6A01G074600 chr7A 83.908 435 52 11 1 429 119126423 119126001 3.690000e-107 399.0
50 TraesCS6A01G074600 chr7A 78.397 287 49 10 2749 3029 619118712 619118991 2.430000e-39 174.0
51 TraesCS6A01G074600 chr7A 76.389 288 53 11 2749 3029 659628380 659628659 2.470000e-29 141.0
52 TraesCS6A01G074600 chr1D 88.037 535 46 15 384 911 365219714 365220237 9.350000e-173 617.0
53 TraesCS6A01G074600 chr1D 85.240 542 43 29 384 911 110730102 110730620 2.100000e-144 523.0
54 TraesCS6A01G074600 chr1D 88.020 409 43 6 25 429 365219409 365219815 4.600000e-131 479.0
55 TraesCS6A01G074600 chr3D 85.106 564 35 30 384 911 545226563 545227113 1.250000e-146 531.0
56 TraesCS6A01G074600 chr3D 75.355 422 98 5 2325 2744 13268248 13268665 1.440000e-46 198.0
57 TraesCS6A01G074600 chr3D 75.000 404 94 7 2323 2723 563225188 563224789 5.230000e-41 180.0
58 TraesCS6A01G074600 chr3D 86.458 96 7 1 4203 4292 556145798 556145703 4.190000e-17 100.0
59 TraesCS6A01G074600 chr3D 80.180 111 13 8 4206 4308 525631898 525632007 2.540000e-09 75.0
60 TraesCS6A01G074600 chr3A 75.592 422 97 5 2325 2744 23860566 23860149 3.100000e-48 204.0
61 TraesCS6A01G074600 chr3A 83.178 107 10 3 4203 4303 693162035 693161931 2.520000e-14 91.6
62 TraesCS6A01G074600 chr4A 79.359 281 47 7 2471 2744 555519298 555519574 3.130000e-43 187.0
63 TraesCS6A01G074600 chr4A 76.948 308 56 12 2749 3049 679182364 679182663 1.890000e-35 161.0
64 TraesCS6A01G074600 chr4A 90.361 83 5 2 4210 4292 29155335 29155414 9.000000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G074600 chr6A 42921566 42928129 6563 False 4132.000000 12122 99.13400 1 6564 3 chr6A.!!$F2 6563
1 TraesCS6A01G074600 chrUn 104865433 104870694 5261 True 1773.500000 3323 90.57925 948 6217 4 chrUn.!!$R2 5269
2 TraesCS6A01G074600 chr6B 76856417 76863097 6680 False 1821.750000 3267 90.25575 959 6564 4 chr6B.!!$F1 5605
3 TraesCS6A01G074600 chr1A 12163915 12164826 911 False 1506.000000 1506 96.49900 1 911 1 chr1A.!!$F1 910
4 TraesCS6A01G074600 chr5B 418811341 418814844 3503 True 701.200000 1291 87.01100 1125 5321 5 chr5B.!!$R1 4196
5 TraesCS6A01G074600 chr5D 354500881 354504235 3354 True 718.400000 1275 86.97860 1125 5321 5 chr5D.!!$R1 4196
6 TraesCS6A01G074600 chr5A 455463781 455467382 3601 True 570.333333 1199 87.48750 1125 5321 6 chr5A.!!$R1 4196
7 TraesCS6A01G074600 chr6D 13178573 13179467 894 False 1026.000000 1026 87.41900 1 911 1 chr6D.!!$F1 910
8 TraesCS6A01G074600 chr2A 172288653 172289359 706 False 976.000000 976 92.25400 236 915 1 chr2A.!!$F2 679
9 TraesCS6A01G074600 chr1B 138845738 138846619 881 False 854.000000 854 84.23300 1 918 1 chr1B.!!$F1 917
10 TraesCS6A01G074600 chr7B 25582819 25583673 854 False 806.000000 806 83.69800 1 911 1 chr7B.!!$F1 910
11 TraesCS6A01G074600 chr7D 1685303 1686148 845 True 697.000000 697 81.81800 32 912 1 chr7D.!!$R1 880
12 TraesCS6A01G074600 chr7A 490115302 490116216 914 True 651.000000 651 80.41900 1 911 1 chr7A.!!$R2 910
13 TraesCS6A01G074600 chr1D 365219409 365220237 828 False 548.000000 617 88.02850 25 911 2 chr1D.!!$F2 886
14 TraesCS6A01G074600 chr1D 110730102 110730620 518 False 523.000000 523 85.24000 384 911 1 chr1D.!!$F1 527
15 TraesCS6A01G074600 chr3D 545226563 545227113 550 False 531.000000 531 85.10600 384 911 1 chr3D.!!$F3 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 1135 0.307760 GGCGCATAGGATTTTCCGTG 59.692 55.0 10.83 0.00 42.75 4.94 F
2652 2918 0.253044 ATGCTGGGAGCGTGTTGTAT 59.747 50.0 0.00 0.00 46.26 2.29 F
2761 3337 1.173043 CTTGAAGGCAACCCGCATAA 58.827 50.0 0.00 0.00 45.17 1.90 F
4582 5719 0.538057 TCTGGTGCTGCTCCCAAAAG 60.538 55.0 17.31 8.57 0.00 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2810 3386 0.251165 GGCCAGCACCACCTTTCTTA 60.251 55.000 0.00 0.00 0.00 2.10 R
3823 4676 0.953471 CATGGCTTCGTGGTTTCGGA 60.953 55.000 0.00 0.00 0.00 4.55 R
4629 5796 3.453717 TCAAATGGAGAGATCCAGACTGG 59.546 47.826 15.99 15.99 43.86 4.00 R
6486 8656 0.035458 AGCGGGACAAAGGAGAACAG 59.965 55.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 7.814587 GGCTAGCATCAAACTTAAAGAACAAAT 59.185 33.333 18.24 0.00 0.00 2.32
75 76 2.636830 ACAAATAAGCTGCGCAGATCT 58.363 42.857 40.21 25.34 0.00 2.75
84 85 2.220593 GCTGCGCAGATCTGAATTAGTC 59.779 50.000 40.21 14.11 0.00 2.59
147 149 6.926272 TGTTGTGTGAAAAGCAAAAACTTACT 59.074 30.769 0.00 0.00 0.00 2.24
459 586 9.965748 ACATGAACAATTTTTAAAACAGAAACG 57.034 25.926 0.00 0.00 0.00 3.60
912 1134 1.157870 CGGCGCATAGGATTTTCCGT 61.158 55.000 10.83 0.00 42.75 4.69
913 1135 0.307760 GGCGCATAGGATTTTCCGTG 59.692 55.000 10.83 0.00 42.75 4.94
917 1139 3.788797 GCGCATAGGATTTTCCGTGAAAG 60.789 47.826 0.30 0.24 42.75 2.62
918 1140 3.621268 CGCATAGGATTTTCCGTGAAAGA 59.379 43.478 6.27 0.00 42.75 2.52
919 1141 4.494199 CGCATAGGATTTTCCGTGAAAGAC 60.494 45.833 6.27 0.37 42.75 3.01
920 1142 4.394920 GCATAGGATTTTCCGTGAAAGACA 59.605 41.667 6.27 0.00 42.75 3.41
921 1143 5.673818 GCATAGGATTTTCCGTGAAAGACAC 60.674 44.000 6.27 0.00 42.75 3.67
931 1153 3.354771 GTGAAAGACACGATTAGCACG 57.645 47.619 0.00 0.00 39.78 5.34
932 1154 2.092211 GTGAAAGACACGATTAGCACGG 59.908 50.000 0.00 0.00 39.78 4.94
933 1155 1.659098 GAAAGACACGATTAGCACGGG 59.341 52.381 0.00 0.00 40.19 5.28
934 1156 0.739813 AAGACACGATTAGCACGGGC 60.740 55.000 0.00 0.00 37.71 6.13
1034 1257 1.920325 CCAGAACCCTCCTGCTCCA 60.920 63.158 0.00 0.00 0.00 3.86
1243 1468 3.700109 CCAAGGTCTGGCTCTCGA 58.300 61.111 0.00 0.00 38.76 4.04
1272 1508 1.226746 GTCACGTTGGTTCTCCTTGG 58.773 55.000 0.00 0.00 34.23 3.61
1277 1513 0.895559 GTTGGTTCTCCTTGGGGCTG 60.896 60.000 0.00 0.00 34.23 4.85
1324 1566 1.626654 CGTGAGACCGCATTTCGCTT 61.627 55.000 0.00 0.00 39.08 4.68
1360 1603 4.319477 GGGTTTACGACGGTTTTAGAAACC 60.319 45.833 11.61 11.61 42.26 3.27
1406 1649 1.490490 TGGTACCAAGATCCCATCAGC 59.510 52.381 13.60 0.00 0.00 4.26
1458 1702 2.198334 TTTTTGGGGGTTTGGGTCAT 57.802 45.000 0.00 0.00 0.00 3.06
1470 1714 6.314917 GGGTTTGGGTCATATTCCTGATATT 58.685 40.000 0.00 0.00 0.00 1.28
1488 1732 5.885352 TGATATTTGGGAAGAAGAAATCGCA 59.115 36.000 0.00 0.00 36.81 5.10
1528 1779 9.945904 ACTCTTAAGAAATTAGTAGTTTCAGGG 57.054 33.333 17.44 10.22 37.89 4.45
1594 1845 4.833478 ACTGAACAGCTTCCATGAGTAT 57.167 40.909 0.00 0.00 0.00 2.12
1630 1881 7.603024 ACAGTAGAGTTAAATGGCTAAACAGAC 59.397 37.037 0.00 0.00 0.00 3.51
1651 1902 6.260050 CAGACTGCCTGTTTTAACTGAACTAA 59.740 38.462 0.00 0.00 38.10 2.24
1719 1970 2.034066 GGCTGCCAGGCTTGTGTA 59.966 61.111 15.17 0.00 37.85 2.90
1720 1971 2.042831 GGCTGCCAGGCTTGTGTAG 61.043 63.158 15.17 0.82 37.85 2.74
1735 1986 6.355397 CTTGTGTAGCATTGGATAACTGAG 57.645 41.667 0.00 0.00 0.00 3.35
1746 1997 2.482142 GGATAACTGAGCTTGTCCCTCG 60.482 54.545 0.00 0.00 31.98 4.63
1747 1998 1.629043 TAACTGAGCTTGTCCCTCGT 58.371 50.000 0.00 0.00 31.98 4.18
1760 2011 1.106944 CCCTCGTTTGTTTGGTGCCT 61.107 55.000 0.00 0.00 0.00 4.75
1789 2040 0.605319 TGTGCTAAAACTGCCCCTCG 60.605 55.000 0.00 0.00 0.00 4.63
1792 2043 1.348366 TGCTAAAACTGCCCCTCGTTA 59.652 47.619 0.00 0.00 0.00 3.18
1808 2059 5.314529 CCTCGTTATAGGACCTGACAGATA 58.685 45.833 3.53 0.00 39.15 1.98
1816 2067 3.708631 AGGACCTGACAGATAACCAGATG 59.291 47.826 3.32 0.00 0.00 2.90
1818 2069 3.110705 ACCTGACAGATAACCAGATGCT 58.889 45.455 3.32 0.00 0.00 3.79
1822 2073 5.508825 CCTGACAGATAACCAGATGCTACTC 60.509 48.000 3.32 0.00 0.00 2.59
1852 2103 8.606040 AACAGATTTTTGTGGTGGATTTTATG 57.394 30.769 0.00 0.00 0.00 1.90
1978 2244 0.392193 ATGGGCTTGCTCGAGTTCTG 60.392 55.000 15.13 3.57 0.00 3.02
1986 2252 1.268079 TGCTCGAGTTCTGTCTCAGTG 59.732 52.381 15.13 0.00 34.46 3.66
2258 2524 1.528586 CGAGAGCTTGGTGTGTTTCTG 59.471 52.381 0.00 0.00 0.00 3.02
2341 2607 9.606631 ACAACACTTTTTATAGGCAATTTTTGA 57.393 25.926 0.00 0.00 0.00 2.69
2353 2619 5.239963 AGGCAATTTTTGATTCAAGGCTTTG 59.760 36.000 1.35 1.35 35.57 2.77
2456 2722 2.158986 TGAATGTGTTTTGGGTTGCTGG 60.159 45.455 0.00 0.00 0.00 4.85
2516 2782 1.376812 CGTTTAGGGAGGCCACCAC 60.377 63.158 21.72 9.34 0.00 4.16
2517 2783 1.001269 GTTTAGGGAGGCCACCACC 60.001 63.158 21.72 9.19 33.40 4.61
2526 2792 1.071814 GGCCACCACCGTCTTTGTA 59.928 57.895 0.00 0.00 0.00 2.41
2621 2887 2.480244 GGGATGCGCTCAAGGAAAAATC 60.480 50.000 9.73 0.00 0.00 2.17
2622 2888 2.424956 GGATGCGCTCAAGGAAAAATCT 59.575 45.455 9.73 0.00 0.00 2.40
2630 2896 4.156739 GCTCAAGGAAAAATCTGGTGGTAG 59.843 45.833 0.00 0.00 0.00 3.18
2643 2909 1.475213 GGTGGTAGTAATGCTGGGAGC 60.475 57.143 0.00 0.00 42.82 4.70
2645 2911 0.464452 GGTAGTAATGCTGGGAGCGT 59.536 55.000 0.00 0.00 46.26 5.07
2647 2913 1.134788 GTAGTAATGCTGGGAGCGTGT 60.135 52.381 0.00 0.00 46.26 4.49
2652 2918 0.253044 ATGCTGGGAGCGTGTTGTAT 59.747 50.000 0.00 0.00 46.26 2.29
2713 2979 1.919816 TCCTGTGCTGGATGAGGCA 60.920 57.895 0.00 0.00 36.01 4.75
2724 2990 4.711399 CTGGATGAGGCACATGAGATAAA 58.289 43.478 1.04 0.00 39.56 1.40
2761 3337 1.173043 CTTGAAGGCAACCCGCATAA 58.827 50.000 0.00 0.00 45.17 1.90
2804 3380 4.271696 TGTCTCCGATCACACTCAAAAT 57.728 40.909 0.00 0.00 0.00 1.82
2810 3386 3.005554 CGATCACACTCAAAATGGCTCT 58.994 45.455 0.00 0.00 0.00 4.09
2818 3394 5.474876 ACACTCAAAATGGCTCTAAGAAAGG 59.525 40.000 0.00 0.00 0.00 3.11
2882 3458 2.397413 CTTTCGGGAGTGCCACCAGT 62.397 60.000 0.08 0.00 35.15 4.00
2952 3528 2.218603 CAACGCTTAAAGTGGACACCT 58.781 47.619 0.00 0.00 0.00 4.00
2959 3535 5.001232 GCTTAAAGTGGACACCTGTAATCA 58.999 41.667 0.00 0.00 0.00 2.57
2995 3571 3.888323 TGTAGCAACAAAGCCTTGAATCA 59.112 39.130 1.09 0.00 36.33 2.57
3071 3647 8.616076 CCTTATGCTCTGTTTTTATCTAACCAG 58.384 37.037 0.00 0.00 0.00 4.00
3074 3650 5.945784 TGCTCTGTTTTTATCTAACCAGCAT 59.054 36.000 0.00 0.00 36.38 3.79
3076 3652 7.775093 TGCTCTGTTTTTATCTAACCAGCATAT 59.225 33.333 0.00 0.00 36.38 1.78
3426 4023 3.337358 CAACAGGTGCACACTATGATCA 58.663 45.455 20.43 0.00 0.00 2.92
3445 4046 4.818534 TCACTCTTGTTCTGTTGATTGC 57.181 40.909 0.00 0.00 0.00 3.56
3516 4222 8.440059 TGTTTGCGTAATATCAGTTACTTTCTG 58.560 33.333 0.00 0.00 33.44 3.02
3657 4500 4.672899 AGCCTTATAAGCAAAAGGGAACA 58.327 39.130 6.99 0.00 42.19 3.18
3752 4605 5.575157 TCGAATAGGCTCTGGAGATATCTT 58.425 41.667 6.70 0.00 0.00 2.40
3758 4611 9.559496 AATAGGCTCTGGAGATATCTTATCTTT 57.441 33.333 6.70 0.00 0.00 2.52
3948 4801 7.990314 TGCTGCCTTACTAATTCATTGTGTATA 59.010 33.333 0.00 0.00 0.00 1.47
3982 4836 3.895656 TCTTGTGTGTAGTTAGCTCCTGT 59.104 43.478 0.00 0.00 0.00 4.00
4032 4886 8.912658 GCTACGAAATGAATTCTGTATCGAATA 58.087 33.333 21.45 9.92 35.79 1.75
4190 5141 9.891828 TGTTTTGCTATGTTTACACTTTCTATG 57.108 29.630 0.00 0.00 0.00 2.23
4194 5145 6.821665 TGCTATGTTTACACTTTCTATGTCCC 59.178 38.462 0.00 0.00 0.00 4.46
4223 5174 8.865090 CACTATATTTTGTACTCCCTCTGATCT 58.135 37.037 0.00 0.00 0.00 2.75
4356 5311 5.957771 AGTTCTAATGGAGCATGGACTAA 57.042 39.130 0.00 0.00 0.00 2.24
4471 5604 6.259608 GCTTATGAGATGTAACATTCAGCTGT 59.740 38.462 14.67 0.00 31.55 4.40
4497 5630 1.604604 TTCCACGGCTTCTTGAAAGG 58.395 50.000 0.00 0.00 0.00 3.11
4508 5641 4.320567 GCTTCTTGAAAGGGTGAAAGCTAC 60.321 45.833 0.00 0.00 0.00 3.58
4582 5719 0.538057 TCTGGTGCTGCTCCCAAAAG 60.538 55.000 17.31 8.57 0.00 2.27
4607 5774 6.126863 ACTTGACCATCTGTTATCCTGAAA 57.873 37.500 0.00 0.00 0.00 2.69
4658 5826 5.582953 TGGATCTCTCCATTTGAACCATTT 58.417 37.500 0.00 0.00 46.95 2.32
4662 5830 6.975196 TCTCTCCATTTGAACCATTTTTCA 57.025 33.333 0.00 0.00 33.55 2.69
4866 6037 5.819901 GCTGGCTACTCAAAATCTTCACTAT 59.180 40.000 0.00 0.00 0.00 2.12
4947 6118 6.370718 ACGAATAGTCACATTGTAGTTTTCCC 59.629 38.462 0.00 0.00 0.00 3.97
4948 6119 6.370442 CGAATAGTCACATTGTAGTTTTCCCA 59.630 38.462 0.00 0.00 0.00 4.37
4949 6120 7.413000 CGAATAGTCACATTGTAGTTTTCCCAG 60.413 40.741 0.00 0.00 0.00 4.45
4950 6121 3.821033 AGTCACATTGTAGTTTTCCCAGC 59.179 43.478 0.00 0.00 0.00 4.85
4951 6122 3.568007 GTCACATTGTAGTTTTCCCAGCA 59.432 43.478 0.00 0.00 0.00 4.41
4952 6123 3.820467 TCACATTGTAGTTTTCCCAGCAG 59.180 43.478 0.00 0.00 0.00 4.24
4953 6124 3.820467 CACATTGTAGTTTTCCCAGCAGA 59.180 43.478 0.00 0.00 0.00 4.26
4954 6125 4.460382 CACATTGTAGTTTTCCCAGCAGAT 59.540 41.667 0.00 0.00 0.00 2.90
4955 6126 5.647658 CACATTGTAGTTTTCCCAGCAGATA 59.352 40.000 0.00 0.00 0.00 1.98
4956 6127 6.319658 CACATTGTAGTTTTCCCAGCAGATAT 59.680 38.462 0.00 0.00 0.00 1.63
4957 6128 6.891908 ACATTGTAGTTTTCCCAGCAGATATT 59.108 34.615 0.00 0.00 0.00 1.28
4958 6129 7.397192 ACATTGTAGTTTTCCCAGCAGATATTT 59.603 33.333 0.00 0.00 0.00 1.40
4959 6130 7.775053 TTGTAGTTTTCCCAGCAGATATTTT 57.225 32.000 0.00 0.00 0.00 1.82
4960 6131 7.156876 TGTAGTTTTCCCAGCAGATATTTTG 57.843 36.000 0.00 0.00 0.00 2.44
4961 6132 6.945435 TGTAGTTTTCCCAGCAGATATTTTGA 59.055 34.615 0.00 0.00 0.00 2.69
4962 6133 6.272822 AGTTTTCCCAGCAGATATTTTGAC 57.727 37.500 0.00 0.00 0.00 3.18
4963 6134 5.185828 AGTTTTCCCAGCAGATATTTTGACC 59.814 40.000 0.00 0.00 0.00 4.02
4964 6135 3.297134 TCCCAGCAGATATTTTGACCC 57.703 47.619 0.00 0.00 0.00 4.46
4965 6136 2.580322 TCCCAGCAGATATTTTGACCCA 59.420 45.455 0.00 0.00 0.00 4.51
4966 6137 3.011144 TCCCAGCAGATATTTTGACCCAA 59.989 43.478 0.00 0.00 0.00 4.12
4967 6138 3.382546 CCCAGCAGATATTTTGACCCAAG 59.617 47.826 0.00 0.00 0.00 3.61
4968 6139 4.272489 CCAGCAGATATTTTGACCCAAGA 58.728 43.478 0.00 0.00 0.00 3.02
4969 6140 4.706476 CCAGCAGATATTTTGACCCAAGAA 59.294 41.667 0.00 0.00 0.00 2.52
4970 6141 5.163581 CCAGCAGATATTTTGACCCAAGAAG 60.164 44.000 0.00 0.00 0.00 2.85
4971 6142 5.416952 CAGCAGATATTTTGACCCAAGAAGT 59.583 40.000 0.00 0.00 0.00 3.01
4972 6143 5.649831 AGCAGATATTTTGACCCAAGAAGTC 59.350 40.000 0.00 0.00 34.72 3.01
4973 6144 5.649831 GCAGATATTTTGACCCAAGAAGTCT 59.350 40.000 0.00 0.00 35.21 3.24
4974 6145 6.404074 GCAGATATTTTGACCCAAGAAGTCTG 60.404 42.308 0.00 0.00 35.21 3.51
4975 6146 6.094603 CAGATATTTTGACCCAAGAAGTCTGG 59.905 42.308 0.00 0.00 35.21 3.86
4994 6165 2.762535 GGTACCTCAGCAGCTTAACA 57.237 50.000 4.06 0.00 0.00 2.41
4995 6166 3.053831 GGTACCTCAGCAGCTTAACAA 57.946 47.619 4.06 0.00 0.00 2.83
4996 6167 3.610911 GGTACCTCAGCAGCTTAACAAT 58.389 45.455 4.06 0.00 0.00 2.71
4997 6168 3.375299 GGTACCTCAGCAGCTTAACAATG 59.625 47.826 4.06 0.00 0.00 2.82
4998 6169 3.423539 ACCTCAGCAGCTTAACAATGA 57.576 42.857 0.00 0.00 0.00 2.57
4999 6170 3.960571 ACCTCAGCAGCTTAACAATGAT 58.039 40.909 0.00 0.00 0.00 2.45
5000 6171 3.693085 ACCTCAGCAGCTTAACAATGATG 59.307 43.478 0.00 0.00 0.00 3.07
5001 6172 3.943381 CCTCAGCAGCTTAACAATGATGA 59.057 43.478 0.00 0.00 37.05 2.92
5002 6173 4.397103 CCTCAGCAGCTTAACAATGATGAA 59.603 41.667 0.00 0.00 38.72 2.57
5003 6174 5.067413 CCTCAGCAGCTTAACAATGATGAAT 59.933 40.000 0.00 0.00 38.72 2.57
5004 6175 6.261603 CCTCAGCAGCTTAACAATGATGAATA 59.738 38.462 0.00 0.00 38.72 1.75
5005 6176 7.255491 TCAGCAGCTTAACAATGATGAATAG 57.745 36.000 0.00 0.00 36.51 1.73
5006 6177 6.825213 TCAGCAGCTTAACAATGATGAATAGT 59.175 34.615 0.00 0.00 36.51 2.12
5007 6178 7.011763 TCAGCAGCTTAACAATGATGAATAGTC 59.988 37.037 0.00 0.00 36.51 2.59
5008 6179 6.825213 AGCAGCTTAACAATGATGAATAGTCA 59.175 34.615 0.00 0.00 38.41 3.41
5009 6180 6.909357 GCAGCTTAACAATGATGAATAGTCAC 59.091 38.462 0.00 0.00 36.31 3.67
5010 6181 7.414429 GCAGCTTAACAATGATGAATAGTCACA 60.414 37.037 0.00 0.00 36.31 3.58
5011 6182 8.618677 CAGCTTAACAATGATGAATAGTCACAT 58.381 33.333 0.00 0.00 36.31 3.21
5012 6183 9.182214 AGCTTAACAATGATGAATAGTCACATT 57.818 29.630 12.22 12.22 36.31 2.71
5013 6184 9.229784 GCTTAACAATGATGAATAGTCACATTG 57.770 33.333 27.56 27.56 45.93 2.82
5022 6193 8.946085 TGATGAATAGTCACATTGTAGTTTTCC 58.054 33.333 0.00 0.00 36.31 3.13
5117 6288 0.909133 TCCTGCAGCATGACACCCTA 60.909 55.000 8.66 0.00 39.69 3.53
5355 6536 0.609131 AGTGGTTCCGGGCTCAAATG 60.609 55.000 0.00 0.00 0.00 2.32
5446 6630 3.367395 GGAAGCAGGTGCATTTTTCTACC 60.367 47.826 4.48 0.00 45.16 3.18
5447 6631 2.875296 AGCAGGTGCATTTTTCTACCA 58.125 42.857 4.48 0.00 45.16 3.25
5551 6761 6.075315 GCCCACCCTAGGTTATTCAATAAAT 58.925 40.000 8.29 0.00 31.02 1.40
5553 6763 6.430000 CCCACCCTAGGTTATTCAATAAATCG 59.570 42.308 8.29 0.00 31.02 3.34
5605 6844 6.801539 TCCTGTGATTTACAATCAGTTGAC 57.198 37.500 0.00 0.00 39.20 3.18
5681 6920 7.665145 TGGATGAATGAAGTTGTGAAGTCATAA 59.335 33.333 0.00 0.00 0.00 1.90
5682 6921 8.514594 GGATGAATGAAGTTGTGAAGTCATAAA 58.485 33.333 0.00 0.00 0.00 1.40
5705 6944 0.523072 CGCTGCAACTTAAGCATGGT 59.477 50.000 1.29 0.00 41.82 3.55
5718 6957 1.837439 AGCATGGTTCGTTATCCCTCA 59.163 47.619 0.00 0.00 0.00 3.86
5747 6989 6.214191 TCTGGCAAATACAAAACAGAAACA 57.786 33.333 0.00 0.00 32.60 2.83
5749 6991 7.271511 TCTGGCAAATACAAAACAGAAACATT 58.728 30.769 0.00 0.00 32.60 2.71
5750 6992 7.224362 TCTGGCAAATACAAAACAGAAACATTG 59.776 33.333 0.00 0.00 32.60 2.82
5753 6995 7.125113 GCAAATACAAAACAGAAACATTGGTG 58.875 34.615 0.00 0.00 0.00 4.17
5771 7013 4.953667 TGGTGTGATTGCAAGCAATTTTA 58.046 34.783 20.56 2.41 45.50 1.52
5773 7015 4.990426 GGTGTGATTGCAAGCAATTTTAGT 59.010 37.500 20.56 0.00 45.50 2.24
5775 7017 6.018016 GGTGTGATTGCAAGCAATTTTAGTTT 60.018 34.615 20.56 0.00 45.50 2.66
5782 7024 5.759273 TGCAAGCAATTTTAGTTTCTGCATT 59.241 32.000 0.00 0.00 35.44 3.56
5836 7078 4.241590 TGTTTTTGCTAAGCATCAGGTG 57.758 40.909 0.00 0.00 38.76 4.00
5839 7081 3.423539 TTTGCTAAGCATCAGGTGTCT 57.576 42.857 0.00 0.00 38.76 3.41
5840 7082 2.391616 TGCTAAGCATCAGGTGTCTG 57.608 50.000 0.00 0.00 36.59 3.51
5841 7083 1.625315 TGCTAAGCATCAGGTGTCTGT 59.375 47.619 0.00 0.00 36.61 3.41
5866 7108 3.713826 TTTGGGTGACTGATAAGGGTC 57.286 47.619 0.00 0.00 0.00 4.46
5867 7109 2.335681 TGGGTGACTGATAAGGGTCA 57.664 50.000 0.00 0.00 39.71 4.02
5873 7115 3.997021 GTGACTGATAAGGGTCAACACTG 59.003 47.826 0.00 0.00 42.88 3.66
5882 7124 1.961277 GTCAACACTGGTGAGGCCG 60.961 63.158 7.78 0.00 41.21 6.13
5883 7125 2.137528 TCAACACTGGTGAGGCCGA 61.138 57.895 7.78 0.00 41.21 5.54
5884 7126 1.669115 CAACACTGGTGAGGCCGAG 60.669 63.158 7.78 0.00 41.21 4.63
5885 7127 3.537206 AACACTGGTGAGGCCGAGC 62.537 63.158 7.78 0.00 41.21 5.03
5886 7128 3.699894 CACTGGTGAGGCCGAGCT 61.700 66.667 0.00 0.00 41.21 4.09
5887 7129 3.699894 ACTGGTGAGGCCGAGCTG 61.700 66.667 0.00 4.71 41.21 4.24
5888 7130 3.699894 CTGGTGAGGCCGAGCTGT 61.700 66.667 0.00 0.00 41.21 4.40
5889 7131 3.947132 CTGGTGAGGCCGAGCTGTG 62.947 68.421 0.00 0.00 41.21 3.66
5890 7132 4.008933 GGTGAGGCCGAGCTGTGT 62.009 66.667 0.00 0.00 0.00 3.72
5891 7133 2.740055 GTGAGGCCGAGCTGTGTG 60.740 66.667 0.00 0.00 0.00 3.82
5892 7134 3.233980 TGAGGCCGAGCTGTGTGT 61.234 61.111 0.00 0.00 0.00 3.72
5893 7135 2.740055 GAGGCCGAGCTGTGTGTG 60.740 66.667 0.00 0.00 0.00 3.82
5894 7136 3.226429 GAGGCCGAGCTGTGTGTGA 62.226 63.158 0.00 0.00 0.00 3.58
5895 7137 2.280797 GGCCGAGCTGTGTGTGAA 60.281 61.111 0.00 0.00 0.00 3.18
5896 7138 1.891919 GGCCGAGCTGTGTGTGAAA 60.892 57.895 0.00 0.00 0.00 2.69
5897 7139 1.237285 GGCCGAGCTGTGTGTGAAAT 61.237 55.000 0.00 0.00 0.00 2.17
5898 7140 0.110056 GCCGAGCTGTGTGTGAAATG 60.110 55.000 0.00 0.00 0.00 2.32
5899 7141 1.511850 CCGAGCTGTGTGTGAAATGA 58.488 50.000 0.00 0.00 0.00 2.57
5900 7142 1.872952 CCGAGCTGTGTGTGAAATGAA 59.127 47.619 0.00 0.00 0.00 2.57
5901 7143 2.096069 CCGAGCTGTGTGTGAAATGAAG 60.096 50.000 0.00 0.00 0.00 3.02
5902 7144 2.802247 CGAGCTGTGTGTGAAATGAAGA 59.198 45.455 0.00 0.00 0.00 2.87
5903 7145 3.434641 CGAGCTGTGTGTGAAATGAAGAT 59.565 43.478 0.00 0.00 0.00 2.40
5904 7146 4.668431 CGAGCTGTGTGTGAAATGAAGATG 60.668 45.833 0.00 0.00 0.00 2.90
5905 7147 4.392047 AGCTGTGTGTGAAATGAAGATGA 58.608 39.130 0.00 0.00 0.00 2.92
5906 7148 4.823442 AGCTGTGTGTGAAATGAAGATGAA 59.177 37.500 0.00 0.00 0.00 2.57
5907 7149 4.913924 GCTGTGTGTGAAATGAAGATGAAC 59.086 41.667 0.00 0.00 0.00 3.18
5908 7150 5.506151 GCTGTGTGTGAAATGAAGATGAACA 60.506 40.000 0.00 0.00 0.00 3.18
5909 7151 6.448207 TGTGTGTGAAATGAAGATGAACAA 57.552 33.333 0.00 0.00 0.00 2.83
5910 7152 7.041635 TGTGTGTGAAATGAAGATGAACAAT 57.958 32.000 0.00 0.00 0.00 2.71
5911 7153 6.919115 TGTGTGTGAAATGAAGATGAACAATG 59.081 34.615 0.00 0.00 0.00 2.82
5912 7154 7.140705 GTGTGTGAAATGAAGATGAACAATGA 58.859 34.615 0.00 0.00 0.00 2.57
5913 7155 7.113965 GTGTGTGAAATGAAGATGAACAATGAC 59.886 37.037 0.00 0.00 0.00 3.06
5914 7156 6.303970 GTGTGAAATGAAGATGAACAATGACG 59.696 38.462 0.00 0.00 0.00 4.35
5915 7157 5.796935 GTGAAATGAAGATGAACAATGACGG 59.203 40.000 0.00 0.00 0.00 4.79
5916 7158 4.361451 AATGAAGATGAACAATGACGGC 57.639 40.909 0.00 0.00 0.00 5.68
5917 7159 1.731709 TGAAGATGAACAATGACGGCG 59.268 47.619 4.80 4.80 0.00 6.46
5918 7160 1.732259 GAAGATGAACAATGACGGCGT 59.268 47.619 14.65 14.65 0.00 5.68
5919 7161 2.665649 AGATGAACAATGACGGCGTA 57.334 45.000 14.74 1.51 0.00 4.42
5920 7162 2.540515 AGATGAACAATGACGGCGTAG 58.459 47.619 14.74 6.09 0.00 3.51
5921 7163 1.593006 GATGAACAATGACGGCGTAGG 59.407 52.381 14.74 5.27 0.00 3.18
5922 7164 0.604073 TGAACAATGACGGCGTAGGA 59.396 50.000 14.74 0.00 0.00 2.94
5923 7165 1.278238 GAACAATGACGGCGTAGGAG 58.722 55.000 14.74 6.49 0.00 3.69
5924 7166 0.739813 AACAATGACGGCGTAGGAGC 60.740 55.000 14.74 0.00 0.00 4.70
5925 7167 2.104331 AATGACGGCGTAGGAGCG 59.896 61.111 14.74 0.00 38.18 5.03
5926 7168 3.426117 AATGACGGCGTAGGAGCGG 62.426 63.158 14.74 0.00 42.21 5.52
5932 7174 4.577246 GCGTAGGAGCGGCAGAGG 62.577 72.222 1.45 0.00 0.00 3.69
5933 7175 3.141488 CGTAGGAGCGGCAGAGGT 61.141 66.667 1.45 0.00 0.00 3.85
5934 7176 2.711922 CGTAGGAGCGGCAGAGGTT 61.712 63.158 1.45 0.00 0.00 3.50
5935 7177 1.153549 GTAGGAGCGGCAGAGGTTG 60.154 63.158 1.45 0.00 0.00 3.77
5936 7178 1.609501 TAGGAGCGGCAGAGGTTGT 60.610 57.895 1.45 0.00 0.00 3.32
5937 7179 1.888436 TAGGAGCGGCAGAGGTTGTG 61.888 60.000 1.45 0.00 0.00 3.33
5938 7180 2.031163 GAGCGGCAGAGGTTGTGT 59.969 61.111 1.45 0.00 0.00 3.72
5943 7185 1.150536 GGCAGAGGTTGTGTGGGAA 59.849 57.895 0.00 0.00 0.00 3.97
5958 7200 5.539574 TGTGTGGGAAATGAAGATGAACAAT 59.460 36.000 0.00 0.00 0.00 2.71
5992 7234 4.458989 TCCTGGCTGTTGTATTGTGATTTC 59.541 41.667 0.00 0.00 0.00 2.17
5994 7236 5.105635 CCTGGCTGTTGTATTGTGATTTCAT 60.106 40.000 0.00 0.00 0.00 2.57
5997 7239 5.104374 GCTGTTGTATTGTGATTTCATGGG 58.896 41.667 0.00 0.00 0.00 4.00
6054 7296 7.700022 ATATACTTCCTTCGTCCCATAGTAC 57.300 40.000 0.00 0.00 0.00 2.73
6069 7314 9.836076 GTCCCATAGTACTTGTTAAAATGAAAC 57.164 33.333 0.00 0.00 0.00 2.78
6100 7348 6.701937 ACGTATTTTAATGCTACACACATCG 58.298 36.000 0.00 0.00 0.00 3.84
6105 7353 3.829886 AATGCTACACACATCGGTTTG 57.170 42.857 0.00 0.00 0.00 2.93
6124 7372 6.811665 CGGTTTGAGACAACTAATATGAGACA 59.188 38.462 0.00 0.00 0.00 3.41
6169 8333 2.140717 GGTGGTCCTGTTAACTTGTCG 58.859 52.381 7.22 0.00 0.00 4.35
6172 8336 1.154197 GTCCTGTTAACTTGTCGCCC 58.846 55.000 7.22 0.00 0.00 6.13
6173 8337 0.759959 TCCTGTTAACTTGTCGCCCA 59.240 50.000 7.22 0.00 0.00 5.36
6174 8338 1.141254 TCCTGTTAACTTGTCGCCCAA 59.859 47.619 7.22 0.00 0.00 4.12
6216 8383 0.883370 ACTTTCAGGGCGTTCGGTTC 60.883 55.000 0.00 0.00 0.00 3.62
6232 8399 6.579865 GTTCGGTTCCTCTCTTCCATATTAA 58.420 40.000 0.00 0.00 0.00 1.40
6285 8452 8.122472 TCAATTAAGGGAAACATTTTCCTCTC 57.878 34.615 15.58 1.95 45.57 3.20
6289 8456 3.092301 GGGAAACATTTTCCTCTCCAGG 58.908 50.000 15.58 0.00 42.01 4.45
6295 8462 3.655777 ACATTTTCCTCTCCAGGTTGGTA 59.344 43.478 0.00 0.00 41.28 3.25
6298 8465 2.940514 TCCTCTCCAGGTTGGTATCA 57.059 50.000 0.00 0.00 41.28 2.15
6299 8466 2.752030 TCCTCTCCAGGTTGGTATCAG 58.248 52.381 0.00 0.00 41.28 2.90
6308 8475 2.766828 AGGTTGGTATCAGACACTAGGC 59.233 50.000 0.00 0.00 0.00 3.93
6311 8478 2.453521 TGGTATCAGACACTAGGCGTT 58.546 47.619 0.00 0.00 0.00 4.84
6329 8496 2.203070 GTCGCCATGGCCGAGAAT 60.203 61.111 30.79 0.00 37.98 2.40
6378 8545 3.710722 CCTCCTCACCGGCAGCTT 61.711 66.667 0.00 0.00 0.00 3.74
6382 8549 1.743252 CCTCACCGGCAGCTTTCTC 60.743 63.158 0.00 0.00 0.00 2.87
6435 8605 3.599343 CACGATGGTTCCTCTCAATTCA 58.401 45.455 0.00 0.00 0.00 2.57
6449 8619 6.702723 CCTCTCAATTCATTTTCAGCACAAAA 59.297 34.615 0.00 0.00 0.00 2.44
6452 8622 5.526846 TCAATTCATTTTCAGCACAAAACCC 59.473 36.000 0.00 0.00 0.00 4.11
6453 8623 3.467374 TCATTTTCAGCACAAAACCCC 57.533 42.857 0.00 0.00 0.00 4.95
6454 8624 3.037549 TCATTTTCAGCACAAAACCCCT 58.962 40.909 0.00 0.00 0.00 4.79
6455 8625 2.977772 TTTTCAGCACAAAACCCCTG 57.022 45.000 0.00 0.00 0.00 4.45
6457 8627 1.398958 TTCAGCACAAAACCCCTGCC 61.399 55.000 0.00 0.00 0.00 4.85
6458 8628 1.833934 CAGCACAAAACCCCTGCCT 60.834 57.895 0.00 0.00 0.00 4.75
6460 8630 2.574018 GCACAAAACCCCTGCCTCC 61.574 63.158 0.00 0.00 0.00 4.30
6461 8631 1.153756 CACAAAACCCCTGCCTCCT 59.846 57.895 0.00 0.00 0.00 3.69
6462 8632 0.895559 CACAAAACCCCTGCCTCCTC 60.896 60.000 0.00 0.00 0.00 3.71
6463 8633 1.360393 ACAAAACCCCTGCCTCCTCA 61.360 55.000 0.00 0.00 0.00 3.86
6464 8634 0.610232 CAAAACCCCTGCCTCCTCAG 60.610 60.000 0.00 0.00 0.00 3.35
6474 8644 1.556911 TGCCTCCTCAGGACAATTCTC 59.443 52.381 0.00 0.00 43.65 2.87
6476 8646 2.026822 GCCTCCTCAGGACAATTCTCAA 60.027 50.000 0.00 0.00 43.65 3.02
6481 8651 5.248640 TCCTCAGGACAATTCTCAATTCAC 58.751 41.667 0.00 0.00 0.00 3.18
6486 8656 3.696548 GGACAATTCTCAATTCACCCCTC 59.303 47.826 0.00 0.00 0.00 4.30
6493 8663 3.261897 TCTCAATTCACCCCTCTGTTCTC 59.738 47.826 0.00 0.00 0.00 2.87
6496 8666 2.118403 TTCACCCCTCTGTTCTCCTT 57.882 50.000 0.00 0.00 0.00 3.36
6505 8675 0.035458 CTGTTCTCCTTTGTCCCGCT 59.965 55.000 0.00 0.00 0.00 5.52
6519 8689 4.776322 CGCTGCCCCCAACATCGA 62.776 66.667 0.00 0.00 0.00 3.59
6532 8702 1.139734 CATCGACACCTCCCACTCG 59.860 63.158 0.00 0.00 0.00 4.18
6540 8710 3.760035 CTCCCACTCGTCACCCCG 61.760 72.222 0.00 0.00 0.00 5.73
6542 8712 4.373116 CCCACTCGTCACCCCGTG 62.373 72.222 0.00 0.00 34.45 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 7.822334 TGCTTCCGAAATTCTTAGACTAATTCA 59.178 33.333 0.00 0.00 0.00 2.57
111 112 6.035112 GCTTTTCACACAACATTCCGTTTTTA 59.965 34.615 0.00 0.00 34.86 1.52
912 1134 2.333926 CCGTGCTAATCGTGTCTTTCA 58.666 47.619 0.00 0.00 0.00 2.69
913 1135 1.659098 CCCGTGCTAATCGTGTCTTTC 59.341 52.381 0.00 0.00 0.00 2.62
917 1139 2.514013 CGCCCGTGCTAATCGTGTC 61.514 63.158 0.00 0.00 34.43 3.67
918 1140 2.508439 CGCCCGTGCTAATCGTGT 60.508 61.111 0.00 0.00 34.43 4.49
919 1141 3.261951 CCGCCCGTGCTAATCGTG 61.262 66.667 0.00 0.00 34.43 4.35
920 1142 4.524318 CCCGCCCGTGCTAATCGT 62.524 66.667 0.00 0.00 34.43 3.73
922 1144 4.547367 AGCCCGCCCGTGCTAATC 62.547 66.667 0.00 0.00 35.69 1.75
923 1145 4.547367 GAGCCCGCCCGTGCTAAT 62.547 66.667 0.00 0.00 38.11 1.73
937 1159 0.169009 GATCAACAGGCCAAACGAGC 59.831 55.000 5.01 0.00 0.00 5.03
938 1160 1.813513 AGATCAACAGGCCAAACGAG 58.186 50.000 5.01 0.00 0.00 4.18
939 1161 3.410631 TTAGATCAACAGGCCAAACGA 57.589 42.857 5.01 0.00 0.00 3.85
940 1162 4.497473 TTTTAGATCAACAGGCCAAACG 57.503 40.909 5.01 0.00 0.00 3.60
1034 1257 2.014033 GACGGGGAGGGAGAGAGGAT 62.014 65.000 0.00 0.00 0.00 3.24
1241 1466 0.320421 AACGTGACAGATGGGGTTCG 60.320 55.000 0.00 0.00 0.00 3.95
1243 1468 0.250727 CCAACGTGACAGATGGGGTT 60.251 55.000 0.00 0.00 31.34 4.11
1324 1566 3.962063 TCGTAAACCCTACATATCCAGCA 59.038 43.478 0.00 0.00 0.00 4.41
1360 1603 2.408835 GACGCGCCCAAATCCATG 59.591 61.111 5.73 0.00 0.00 3.66
1405 1648 1.457346 CTCCACAAATCCTGACTGGC 58.543 55.000 0.00 0.00 35.26 4.85
1406 1649 1.271543 TGCTCCACAAATCCTGACTGG 60.272 52.381 0.00 0.00 37.10 4.00
1470 1714 4.036734 GCATATGCGATTTCTTCTTCCCAA 59.963 41.667 12.82 0.00 0.00 4.12
1519 1770 8.768501 AAGTAAGAAGAAAAATCCCTGAAACT 57.231 30.769 0.00 0.00 0.00 2.66
1520 1771 8.851145 AGAAGTAAGAAGAAAAATCCCTGAAAC 58.149 33.333 0.00 0.00 0.00 2.78
1522 1773 8.217799 TGAGAAGTAAGAAGAAAAATCCCTGAA 58.782 33.333 0.00 0.00 0.00 3.02
1524 1775 7.986085 TGAGAAGTAAGAAGAAAAATCCCTG 57.014 36.000 0.00 0.00 0.00 4.45
1525 1776 9.237187 GAATGAGAAGTAAGAAGAAAAATCCCT 57.763 33.333 0.00 0.00 0.00 4.20
1526 1777 9.014297 TGAATGAGAAGTAAGAAGAAAAATCCC 57.986 33.333 0.00 0.00 0.00 3.85
1527 1778 9.833182 GTGAATGAGAAGTAAGAAGAAAAATCC 57.167 33.333 0.00 0.00 0.00 3.01
1554 1805 5.211973 TCAGTTATCTATGCCTCTCAGGTT 58.788 41.667 0.00 0.00 37.80 3.50
1594 1845 6.659745 TTTAACTCTACTGTTCTGCCACTA 57.340 37.500 0.00 0.00 0.00 2.74
1630 1881 8.134895 TGATTTTAGTTCAGTTAAAACAGGCAG 58.865 33.333 0.00 0.00 34.04 4.85
1651 1902 9.793252 GCATCATGTCTTAATTACTGTTGATTT 57.207 29.630 0.00 0.00 0.00 2.17
1687 1938 4.559502 GCCATATCCAACGGCAGT 57.440 55.556 0.00 0.00 45.52 4.40
1719 1970 3.944015 GACAAGCTCAGTTATCCAATGCT 59.056 43.478 0.00 0.00 0.00 3.79
1720 1971 3.065925 GGACAAGCTCAGTTATCCAATGC 59.934 47.826 0.00 0.00 0.00 3.56
1735 1986 1.269051 CCAAACAAACGAGGGACAAGC 60.269 52.381 0.00 0.00 0.00 4.01
1746 1997 5.897377 ACATCTATAGGCACCAAACAAAC 57.103 39.130 0.00 0.00 0.00 2.93
1747 1998 7.066887 CACATACATCTATAGGCACCAAACAAA 59.933 37.037 0.00 0.00 0.00 2.83
1760 2011 6.934645 GGGCAGTTTTAGCACATACATCTATA 59.065 38.462 0.00 0.00 34.91 1.31
1789 2040 6.550108 TCTGGTTATCTGTCAGGTCCTATAAC 59.450 42.308 11.02 11.02 0.00 1.89
1792 2043 5.144159 TCTGGTTATCTGTCAGGTCCTAT 57.856 43.478 0.00 0.00 0.00 2.57
1822 2073 4.097741 TCCACCACAAAAATCTGTTCACAG 59.902 41.667 0.02 0.02 45.08 3.66
1833 2084 5.762218 CCAAGCATAAAATCCACCACAAAAA 59.238 36.000 0.00 0.00 0.00 1.94
1852 2103 1.464997 CCAAACTAGAAGCGACCAAGC 59.535 52.381 0.00 0.00 37.41 4.01
1978 2244 5.465056 GCTATTTGCTAATCCTCACTGAGAC 59.535 44.000 7.69 0.00 38.95 3.36
1986 2252 6.694411 CACATTGTTGCTATTTGCTAATCCTC 59.306 38.462 0.00 0.00 43.37 3.71
2258 2524 3.065925 GCAGCAGATGGATAAGAAACACC 59.934 47.826 0.00 0.00 0.00 4.16
2326 2592 7.422465 AGCCTTGAATCAAAAATTGCCTATA 57.578 32.000 0.00 0.00 0.00 1.31
2341 2607 2.875296 TGTAGCACCAAAGCCTTGAAT 58.125 42.857 0.00 0.00 34.14 2.57
2353 2619 2.096980 GGTTCGGCTTTAATGTAGCACC 59.903 50.000 0.37 0.00 40.42 5.01
2422 2688 2.094026 ACACATTCATCGCTGTGAGCTA 60.094 45.455 8.35 0.00 44.35 3.32
2423 2689 1.338484 ACACATTCATCGCTGTGAGCT 60.338 47.619 8.35 0.00 44.35 4.09
2424 2690 1.081892 ACACATTCATCGCTGTGAGC 58.918 50.000 8.35 0.00 44.35 4.26
2464 2730 5.932619 TCAAGAGTAATCATTCCTTCGGA 57.067 39.130 0.00 0.00 0.00 4.55
2483 2749 4.253685 CCTAAACGCCTTCTTCTGATCAA 58.746 43.478 0.00 0.00 0.00 2.57
2516 2782 4.496670 CGGCTCCTACAAAGACGG 57.503 61.111 0.00 0.00 41.63 4.79
2526 2792 0.827925 TCACACTCAGAACGGCTCCT 60.828 55.000 0.00 0.00 0.00 3.69
2621 2887 1.837439 TCCCAGCATTACTACCACCAG 59.163 52.381 0.00 0.00 0.00 4.00
2622 2888 1.837439 CTCCCAGCATTACTACCACCA 59.163 52.381 0.00 0.00 0.00 4.17
2630 2896 0.447801 CAACACGCTCCCAGCATTAC 59.552 55.000 0.00 0.00 42.58 1.89
2643 2909 2.083774 ACTCCATGGCAATACAACACG 58.916 47.619 6.96 0.00 0.00 4.49
2645 2911 4.568072 ACTACTCCATGGCAATACAACA 57.432 40.909 6.96 0.00 0.00 3.33
2647 2913 4.523083 GGAACTACTCCATGGCAATACAA 58.477 43.478 6.96 0.00 44.67 2.41
2674 2940 2.223876 ACAGTTTTCAACCATGCTGCAG 60.224 45.455 10.11 10.11 0.00 4.41
2713 2979 7.653713 CCTTAGCGATGTACTTTTATCTCATGT 59.346 37.037 0.00 0.00 0.00 3.21
2761 3337 7.235193 AGACAAGTTAGATGATGCATATCTCCT 59.765 37.037 16.86 12.92 36.38 3.69
2772 3348 5.360999 TGTGATCGGAGACAAGTTAGATGAT 59.639 40.000 0.00 0.00 42.51 2.45
2776 3352 4.079970 AGTGTGATCGGAGACAAGTTAGA 58.920 43.478 0.00 0.00 42.51 2.10
2804 3380 1.271379 GCACCACCTTTCTTAGAGCCA 60.271 52.381 0.00 0.00 0.00 4.75
2810 3386 0.251165 GGCCAGCACCACCTTTCTTA 60.251 55.000 0.00 0.00 0.00 2.10
2818 3394 2.137177 TTTAGGGAGGCCAGCACCAC 62.137 60.000 5.01 0.00 0.00 4.16
2855 3431 1.393883 GCACTCCCGAAAGAACGATTC 59.606 52.381 0.00 0.00 35.09 2.52
2882 3458 2.698803 CGATGAATGTGTTCTGGGTCA 58.301 47.619 0.00 0.00 35.33 4.02
2952 3528 8.726988 GCTACATTAAAACTGAACCTGATTACA 58.273 33.333 0.00 0.00 0.00 2.41
2959 3535 6.952773 TGTTGCTACATTAAAACTGAACCT 57.047 33.333 0.00 0.00 0.00 3.50
3025 3601 8.641541 CATAAGGTGCCACTTTATCCATTAATT 58.358 33.333 9.06 0.00 29.35 1.40
3071 3647 7.505646 CGCAGAGTCAACTAAGAAATATATGC 58.494 38.462 0.00 0.00 0.00 3.14
3074 3650 6.806751 AGCGCAGAGTCAACTAAGAAATATA 58.193 36.000 11.47 0.00 0.00 0.86
3076 3652 5.073311 AGCGCAGAGTCAACTAAGAAATA 57.927 39.130 11.47 0.00 0.00 1.40
3253 3849 4.021016 GGTCCTCATACTGCCCTGTAATAG 60.021 50.000 0.00 0.00 0.00 1.73
3426 4023 3.825328 AGGCAATCAACAGAACAAGAGT 58.175 40.909 0.00 0.00 0.00 3.24
3527 4233 9.174166 GGTGCATTAGAAGGATAGAACTTAAAA 57.826 33.333 0.00 0.00 0.00 1.52
3657 4500 0.976641 TTCCATGACGTGCTCTTCCT 59.023 50.000 0.00 0.00 0.00 3.36
3758 4611 3.888930 CTGAGTTTAGTTGGAGCCCAAAA 59.111 43.478 8.06 0.00 45.73 2.44
3823 4676 0.953471 CATGGCTTCGTGGTTTCGGA 60.953 55.000 0.00 0.00 0.00 4.55
3948 4801 4.104383 ACACACAAGAACATCCAGGAAT 57.896 40.909 0.00 0.00 0.00 3.01
4032 4886 8.919777 AAGCATACTACTAAACAAGGTTCTTT 57.080 30.769 0.00 0.00 0.00 2.52
4189 5140 7.365295 GGGAGTACAAAATATAGTGAAGGGACA 60.365 40.741 0.00 0.00 0.00 4.02
4190 5141 6.990939 GGGAGTACAAAATATAGTGAAGGGAC 59.009 42.308 0.00 0.00 0.00 4.46
4194 5145 8.696374 TCAGAGGGAGTACAAAATATAGTGAAG 58.304 37.037 0.00 0.00 0.00 3.02
4471 5604 4.138290 TCAAGAAGCCGTGGAAACAATAA 58.862 39.130 0.00 0.00 46.06 1.40
4497 5630 8.338986 GCTTAATAGATTTCAGTAGCTTTCACC 58.661 37.037 0.00 0.00 0.00 4.02
4582 5719 6.222038 TCAGGATAACAGATGGTCAAGTAC 57.778 41.667 0.00 0.00 0.00 2.73
4607 5774 8.378565 ACTGGCTCTTGTATACATATATTTGCT 58.621 33.333 6.36 0.00 0.00 3.91
4629 5796 3.453717 TCAAATGGAGAGATCCAGACTGG 59.546 47.826 15.99 15.99 43.86 4.00
4673 5842 8.840321 GGTCAAGTGAACTTTACATGCATATAT 58.160 33.333 0.00 0.00 33.08 0.86
4674 5843 7.826744 TGGTCAAGTGAACTTTACATGCATATA 59.173 33.333 0.00 0.00 33.08 0.86
4866 6037 5.003160 ACAATCGAAGGAATGACATTCACA 58.997 37.500 25.59 7.99 41.03 3.58
4932 6103 4.098914 TCTGCTGGGAAAACTACAATGT 57.901 40.909 0.00 0.00 0.00 2.71
4947 6118 5.416952 ACTTCTTGGGTCAAAATATCTGCTG 59.583 40.000 0.00 0.00 0.00 4.41
4948 6119 5.574188 ACTTCTTGGGTCAAAATATCTGCT 58.426 37.500 0.00 0.00 0.00 4.24
4949 6120 5.649831 AGACTTCTTGGGTCAAAATATCTGC 59.350 40.000 0.00 0.00 36.29 4.26
4950 6121 6.094603 CCAGACTTCTTGGGTCAAAATATCTG 59.905 42.308 0.00 0.00 36.29 2.90
4951 6122 6.183347 CCAGACTTCTTGGGTCAAAATATCT 58.817 40.000 0.00 0.00 36.29 1.98
4952 6123 5.358160 CCCAGACTTCTTGGGTCAAAATATC 59.642 44.000 2.08 0.00 38.06 1.63
4953 6124 5.264395 CCCAGACTTCTTGGGTCAAAATAT 58.736 41.667 2.08 0.00 38.06 1.28
4954 6125 4.662278 CCCAGACTTCTTGGGTCAAAATA 58.338 43.478 2.08 0.00 38.06 1.40
4955 6126 3.500343 CCCAGACTTCTTGGGTCAAAAT 58.500 45.455 2.08 0.00 38.06 1.82
4956 6127 2.944129 CCCAGACTTCTTGGGTCAAAA 58.056 47.619 2.08 0.00 38.06 2.44
4957 6128 2.656947 CCCAGACTTCTTGGGTCAAA 57.343 50.000 2.08 0.00 38.06 2.69
4963 6134 2.234908 CTGAGGTACCCAGACTTCTTGG 59.765 54.545 20.01 0.00 35.67 3.61
4964 6135 2.354203 GCTGAGGTACCCAGACTTCTTG 60.354 54.545 25.81 9.13 35.67 3.02
4965 6136 1.903183 GCTGAGGTACCCAGACTTCTT 59.097 52.381 25.81 0.00 35.67 2.52
4966 6137 1.203187 TGCTGAGGTACCCAGACTTCT 60.203 52.381 25.81 0.48 35.67 2.85
4967 6138 1.205893 CTGCTGAGGTACCCAGACTTC 59.794 57.143 25.81 11.09 35.67 3.01
4968 6139 1.270907 CTGCTGAGGTACCCAGACTT 58.729 55.000 25.81 1.91 35.67 3.01
4969 6140 1.261238 GCTGCTGAGGTACCCAGACT 61.261 60.000 25.81 2.62 35.67 3.24
4970 6141 1.219393 GCTGCTGAGGTACCCAGAC 59.781 63.158 25.81 18.87 35.67 3.51
4971 6142 0.545309 AAGCTGCTGAGGTACCCAGA 60.545 55.000 25.81 14.22 35.67 3.86
4972 6143 1.195115 TAAGCTGCTGAGGTACCCAG 58.805 55.000 20.25 20.25 37.19 4.45
4973 6144 1.278127 GTTAAGCTGCTGAGGTACCCA 59.722 52.381 8.74 5.57 0.00 4.51
4974 6145 1.278127 TGTTAAGCTGCTGAGGTACCC 59.722 52.381 8.74 0.32 0.00 3.69
4975 6146 2.762535 TGTTAAGCTGCTGAGGTACC 57.237 50.000 2.73 2.73 0.00 3.34
4976 6147 4.253685 TCATTGTTAAGCTGCTGAGGTAC 58.746 43.478 1.35 0.00 0.00 3.34
4977 6148 4.551702 TCATTGTTAAGCTGCTGAGGTA 57.448 40.909 1.35 0.00 0.00 3.08
4978 6149 3.423539 TCATTGTTAAGCTGCTGAGGT 57.576 42.857 1.35 0.00 0.00 3.85
4979 6150 3.943381 TCATCATTGTTAAGCTGCTGAGG 59.057 43.478 1.35 0.00 0.00 3.86
4980 6151 5.556355 TTCATCATTGTTAAGCTGCTGAG 57.444 39.130 1.35 0.00 0.00 3.35
4981 6152 6.825213 ACTATTCATCATTGTTAAGCTGCTGA 59.175 34.615 1.35 0.00 0.00 4.26
4982 6153 7.024340 ACTATTCATCATTGTTAAGCTGCTG 57.976 36.000 1.35 0.00 0.00 4.41
4983 6154 6.825213 TGACTATTCATCATTGTTAAGCTGCT 59.175 34.615 0.00 0.00 0.00 4.24
4984 6155 6.909357 GTGACTATTCATCATTGTTAAGCTGC 59.091 38.462 0.00 0.00 33.11 5.25
4985 6156 7.977904 TGTGACTATTCATCATTGTTAAGCTG 58.022 34.615 0.00 0.00 33.11 4.24
4986 6157 8.743085 ATGTGACTATTCATCATTGTTAAGCT 57.257 30.769 0.00 0.00 33.11 3.74
4987 6158 9.229784 CAATGTGACTATTCATCATTGTTAAGC 57.770 33.333 19.02 0.00 41.03 3.09
4996 6167 8.946085 GGAAAACTACAATGTGACTATTCATCA 58.054 33.333 0.00 0.00 33.11 3.07
4997 6168 8.398665 GGGAAAACTACAATGTGACTATTCATC 58.601 37.037 0.00 0.00 33.11 2.92
4998 6169 7.888021 TGGGAAAACTACAATGTGACTATTCAT 59.112 33.333 0.00 0.00 33.11 2.57
4999 6170 7.227873 TGGGAAAACTACAATGTGACTATTCA 58.772 34.615 0.00 0.00 0.00 2.57
5000 6171 7.626452 GCTGGGAAAACTACAATGTGACTATTC 60.626 40.741 0.00 0.00 0.00 1.75
5001 6172 6.151144 GCTGGGAAAACTACAATGTGACTATT 59.849 38.462 0.00 0.00 0.00 1.73
5002 6173 5.648092 GCTGGGAAAACTACAATGTGACTAT 59.352 40.000 0.00 0.00 0.00 2.12
5003 6174 5.001232 GCTGGGAAAACTACAATGTGACTA 58.999 41.667 0.00 0.00 0.00 2.59
5004 6175 3.821033 GCTGGGAAAACTACAATGTGACT 59.179 43.478 0.00 0.00 0.00 3.41
5005 6176 3.568007 TGCTGGGAAAACTACAATGTGAC 59.432 43.478 0.00 0.00 0.00 3.67
5006 6177 3.820467 CTGCTGGGAAAACTACAATGTGA 59.180 43.478 0.00 0.00 0.00 3.58
5007 6178 3.820467 TCTGCTGGGAAAACTACAATGTG 59.180 43.478 0.00 0.00 0.00 3.21
5008 6179 4.098914 TCTGCTGGGAAAACTACAATGT 57.901 40.909 0.00 0.00 0.00 2.71
5009 6180 6.949352 ATATCTGCTGGGAAAACTACAATG 57.051 37.500 0.00 0.00 0.00 2.82
5010 6181 7.961326 AAATATCTGCTGGGAAAACTACAAT 57.039 32.000 0.00 0.00 0.00 2.71
5011 6182 7.450014 TCAAAATATCTGCTGGGAAAACTACAA 59.550 33.333 0.00 0.00 0.00 2.41
5012 6183 6.945435 TCAAAATATCTGCTGGGAAAACTACA 59.055 34.615 0.00 0.00 0.00 2.74
5013 6184 7.251281 GTCAAAATATCTGCTGGGAAAACTAC 58.749 38.462 0.00 0.00 0.00 2.73
5014 6185 6.377146 GGTCAAAATATCTGCTGGGAAAACTA 59.623 38.462 0.00 0.00 0.00 2.24
5015 6186 5.185828 GGTCAAAATATCTGCTGGGAAAACT 59.814 40.000 0.00 0.00 0.00 2.66
5016 6187 5.410924 GGTCAAAATATCTGCTGGGAAAAC 58.589 41.667 0.00 0.00 0.00 2.43
5017 6188 4.466015 GGGTCAAAATATCTGCTGGGAAAA 59.534 41.667 0.00 0.00 0.00 2.29
5018 6189 4.023291 GGGTCAAAATATCTGCTGGGAAA 58.977 43.478 0.00 0.00 0.00 3.13
5019 6190 3.011144 TGGGTCAAAATATCTGCTGGGAA 59.989 43.478 0.00 0.00 0.00 3.97
5020 6191 2.580322 TGGGTCAAAATATCTGCTGGGA 59.420 45.455 0.00 0.00 0.00 4.37
5021 6192 3.017048 TGGGTCAAAATATCTGCTGGG 57.983 47.619 0.00 0.00 0.00 4.45
5022 6193 4.272489 TCTTGGGTCAAAATATCTGCTGG 58.728 43.478 0.00 0.00 0.00 4.85
5117 6288 2.711922 GGCGTCCCGAGTCATCACT 61.712 63.158 0.00 0.00 34.57 3.41
5355 6536 2.031157 ACGTCTGCAATAAAACACTGGC 60.031 45.455 0.00 0.00 0.00 4.85
5366 6548 3.632145 GGGGATTAAATCACGTCTGCAAT 59.368 43.478 0.00 0.00 31.97 3.56
5446 6630 0.310543 TTGCCGCAACAACTAGCTTG 59.689 50.000 0.38 0.00 35.77 4.01
5447 6631 0.310854 GTTGCCGCAACAACTAGCTT 59.689 50.000 27.58 0.00 45.20 3.74
5522 6732 1.641552 TAACCTAGGGTGGGCATGCC 61.642 60.000 29.47 29.47 35.34 4.40
5551 6761 5.047943 TCTCCTGTTTTCCAAACAAAAACGA 60.048 36.000 3.77 0.22 45.32 3.85
5553 6763 7.609760 AATCTCCTGTTTTCCAAACAAAAAC 57.390 32.000 3.77 4.88 43.60 2.43
5681 6920 1.946768 TGCTTAAGTTGCAGCGTTCTT 59.053 42.857 4.02 0.00 39.04 2.52
5682 6921 1.593196 TGCTTAAGTTGCAGCGTTCT 58.407 45.000 4.02 0.00 39.04 3.01
5705 6944 5.428253 CCAGAAGAAATGAGGGATAACGAA 58.572 41.667 0.00 0.00 0.00 3.85
5718 6957 7.725251 TCTGTTTTGTATTTGCCAGAAGAAAT 58.275 30.769 0.00 0.00 0.00 2.17
5747 6989 3.688694 ATTGCTTGCAATCACACCAAT 57.311 38.095 14.27 1.93 0.00 3.16
5749 6991 3.472283 AAATTGCTTGCAATCACACCA 57.528 38.095 19.32 0.00 0.00 4.17
5750 6992 4.990426 ACTAAAATTGCTTGCAATCACACC 59.010 37.500 19.32 0.00 0.00 4.16
5753 6995 7.285788 CAGAAACTAAAATTGCTTGCAATCAC 58.714 34.615 19.32 0.00 0.00 3.06
5771 7013 5.699143 AGCAGGGATATAAATGCAGAAACT 58.301 37.500 0.00 0.00 41.14 2.66
5773 7015 5.945310 AGAGCAGGGATATAAATGCAGAAA 58.055 37.500 0.00 0.00 41.14 2.52
5775 7017 5.311265 CAAGAGCAGGGATATAAATGCAGA 58.689 41.667 0.00 0.00 41.14 4.26
5815 7057 3.636300 ACACCTGATGCTTAGCAAAAACA 59.364 39.130 12.08 8.56 43.62 2.83
5818 7060 3.503363 CAGACACCTGATGCTTAGCAAAA 59.497 43.478 12.08 1.13 43.62 2.44
5856 7098 2.976185 TCACCAGTGTTGACCCTTATCA 59.024 45.455 0.00 0.00 0.00 2.15
5859 7101 1.697432 CCTCACCAGTGTTGACCCTTA 59.303 52.381 0.00 0.00 0.00 2.69
5863 7105 1.600916 GGCCTCACCAGTGTTGACC 60.601 63.158 0.00 0.00 38.86 4.02
5866 7108 1.669115 CTCGGCCTCACCAGTGTTG 60.669 63.158 0.00 0.00 39.03 3.33
5867 7109 2.743718 CTCGGCCTCACCAGTGTT 59.256 61.111 0.00 0.00 39.03 3.32
5873 7115 4.008933 ACACAGCTCGGCCTCACC 62.009 66.667 0.00 0.00 0.00 4.02
5882 7124 4.453478 TCATCTTCATTTCACACACAGCTC 59.547 41.667 0.00 0.00 0.00 4.09
5883 7125 4.392047 TCATCTTCATTTCACACACAGCT 58.608 39.130 0.00 0.00 0.00 4.24
5884 7126 4.754372 TCATCTTCATTTCACACACAGC 57.246 40.909 0.00 0.00 0.00 4.40
5885 7127 6.063640 TGTTCATCTTCATTTCACACACAG 57.936 37.500 0.00 0.00 0.00 3.66
5886 7128 6.448207 TTGTTCATCTTCATTTCACACACA 57.552 33.333 0.00 0.00 0.00 3.72
5887 7129 7.113965 GTCATTGTTCATCTTCATTTCACACAC 59.886 37.037 0.00 0.00 0.00 3.82
5888 7130 7.140705 GTCATTGTTCATCTTCATTTCACACA 58.859 34.615 0.00 0.00 0.00 3.72
5889 7131 6.303970 CGTCATTGTTCATCTTCATTTCACAC 59.696 38.462 0.00 0.00 0.00 3.82
5890 7132 6.372981 CGTCATTGTTCATCTTCATTTCACA 58.627 36.000 0.00 0.00 0.00 3.58
5891 7133 5.796935 CCGTCATTGTTCATCTTCATTTCAC 59.203 40.000 0.00 0.00 0.00 3.18
5892 7134 5.619757 GCCGTCATTGTTCATCTTCATTTCA 60.620 40.000 0.00 0.00 0.00 2.69
5893 7135 4.795278 GCCGTCATTGTTCATCTTCATTTC 59.205 41.667 0.00 0.00 0.00 2.17
5894 7136 4.672542 CGCCGTCATTGTTCATCTTCATTT 60.673 41.667 0.00 0.00 0.00 2.32
5895 7137 3.181507 CGCCGTCATTGTTCATCTTCATT 60.182 43.478 0.00 0.00 0.00 2.57
5896 7138 2.352651 CGCCGTCATTGTTCATCTTCAT 59.647 45.455 0.00 0.00 0.00 2.57
5897 7139 1.731709 CGCCGTCATTGTTCATCTTCA 59.268 47.619 0.00 0.00 0.00 3.02
5898 7140 1.732259 ACGCCGTCATTGTTCATCTTC 59.268 47.619 0.00 0.00 0.00 2.87
5899 7141 1.808411 ACGCCGTCATTGTTCATCTT 58.192 45.000 0.00 0.00 0.00 2.40
5900 7142 2.540515 CTACGCCGTCATTGTTCATCT 58.459 47.619 0.00 0.00 0.00 2.90
5901 7143 1.593006 CCTACGCCGTCATTGTTCATC 59.407 52.381 0.00 0.00 0.00 2.92
5902 7144 1.206132 TCCTACGCCGTCATTGTTCAT 59.794 47.619 0.00 0.00 0.00 2.57
5903 7145 0.604073 TCCTACGCCGTCATTGTTCA 59.396 50.000 0.00 0.00 0.00 3.18
5904 7146 1.278238 CTCCTACGCCGTCATTGTTC 58.722 55.000 0.00 0.00 0.00 3.18
5905 7147 0.739813 GCTCCTACGCCGTCATTGTT 60.740 55.000 0.00 0.00 0.00 2.83
5906 7148 1.153628 GCTCCTACGCCGTCATTGT 60.154 57.895 0.00 0.00 0.00 2.71
5907 7149 2.230940 CGCTCCTACGCCGTCATTG 61.231 63.158 0.00 0.00 0.00 2.82
5908 7150 2.104331 CGCTCCTACGCCGTCATT 59.896 61.111 0.00 0.00 0.00 2.57
5909 7151 3.900892 CCGCTCCTACGCCGTCAT 61.901 66.667 0.00 0.00 0.00 3.06
5914 7156 4.577246 CTCTGCCGCTCCTACGCC 62.577 72.222 0.00 0.00 0.00 5.68
5915 7157 4.577246 CCTCTGCCGCTCCTACGC 62.577 72.222 0.00 0.00 0.00 4.42
5916 7158 2.711922 AACCTCTGCCGCTCCTACG 61.712 63.158 0.00 0.00 0.00 3.51
5917 7159 1.153549 CAACCTCTGCCGCTCCTAC 60.154 63.158 0.00 0.00 0.00 3.18
5918 7160 1.609501 ACAACCTCTGCCGCTCCTA 60.610 57.895 0.00 0.00 0.00 2.94
5919 7161 2.925170 ACAACCTCTGCCGCTCCT 60.925 61.111 0.00 0.00 0.00 3.69
5920 7162 2.743928 CACAACCTCTGCCGCTCC 60.744 66.667 0.00 0.00 0.00 4.70
5921 7163 2.031163 ACACAACCTCTGCCGCTC 59.969 61.111 0.00 0.00 0.00 5.03
5922 7164 2.281070 CACACAACCTCTGCCGCT 60.281 61.111 0.00 0.00 0.00 5.52
5923 7165 3.357079 CCACACAACCTCTGCCGC 61.357 66.667 0.00 0.00 0.00 6.53
5924 7166 2.669569 CCCACACAACCTCTGCCG 60.670 66.667 0.00 0.00 0.00 5.69
5925 7167 0.467290 TTTCCCACACAACCTCTGCC 60.467 55.000 0.00 0.00 0.00 4.85
5926 7168 1.270550 CATTTCCCACACAACCTCTGC 59.729 52.381 0.00 0.00 0.00 4.26
5927 7169 2.862541 TCATTTCCCACACAACCTCTG 58.137 47.619 0.00 0.00 0.00 3.35
5928 7170 3.138283 TCTTCATTTCCCACACAACCTCT 59.862 43.478 0.00 0.00 0.00 3.69
5929 7171 3.486383 TCTTCATTTCCCACACAACCTC 58.514 45.455 0.00 0.00 0.00 3.85
5930 7172 3.593442 TCTTCATTTCCCACACAACCT 57.407 42.857 0.00 0.00 0.00 3.50
5931 7173 3.826157 TCATCTTCATTTCCCACACAACC 59.174 43.478 0.00 0.00 0.00 3.77
5932 7174 5.221224 TGTTCATCTTCATTTCCCACACAAC 60.221 40.000 0.00 0.00 0.00 3.32
5933 7175 4.892345 TGTTCATCTTCATTTCCCACACAA 59.108 37.500 0.00 0.00 0.00 3.33
5934 7176 4.468713 TGTTCATCTTCATTTCCCACACA 58.531 39.130 0.00 0.00 0.00 3.72
5935 7177 5.452078 TTGTTCATCTTCATTTCCCACAC 57.548 39.130 0.00 0.00 0.00 3.82
5936 7178 5.774184 TCATTGTTCATCTTCATTTCCCACA 59.226 36.000 0.00 0.00 0.00 4.17
5937 7179 6.095377 GTCATTGTTCATCTTCATTTCCCAC 58.905 40.000 0.00 0.00 0.00 4.61
5938 7180 5.106197 CGTCATTGTTCATCTTCATTTCCCA 60.106 40.000 0.00 0.00 0.00 4.37
5943 7185 5.124297 TGCATCGTCATTGTTCATCTTCATT 59.876 36.000 0.00 0.00 0.00 2.57
5958 7200 0.745486 CAGCCAGGATTGCATCGTCA 60.745 55.000 0.00 0.00 0.00 4.35
6022 7264 8.800332 TGGGACGAAGGAAGTATATATTAACTC 58.200 37.037 0.00 0.00 0.00 3.01
6026 7268 9.986157 ACTATGGGACGAAGGAAGTATATATTA 57.014 33.333 0.00 0.00 0.00 0.98
6027 7269 8.896722 ACTATGGGACGAAGGAAGTATATATT 57.103 34.615 0.00 0.00 0.00 1.28
6028 7270 9.406113 GTACTATGGGACGAAGGAAGTATATAT 57.594 37.037 0.00 0.00 0.00 0.86
6029 7271 8.609483 AGTACTATGGGACGAAGGAAGTATATA 58.391 37.037 0.00 0.00 0.00 0.86
6030 7272 7.468496 AGTACTATGGGACGAAGGAAGTATAT 58.532 38.462 0.00 0.00 0.00 0.86
6096 7342 7.706607 TCTCATATTAGTTGTCTCAAACCGATG 59.293 37.037 0.00 0.00 0.00 3.84
6100 7348 8.035394 TCTGTCTCATATTAGTTGTCTCAAACC 58.965 37.037 0.00 0.00 0.00 3.27
6144 7392 4.079958 ACAAGTTAACAGGACCACCTCTTT 60.080 41.667 8.61 0.00 45.94 2.52
6187 8351 4.368391 CTGAAAGTCAGGCACGCT 57.632 55.556 0.00 0.00 40.71 5.07
6196 8360 0.883370 AACCGAACGCCCTGAAAGTC 60.883 55.000 0.00 0.00 0.00 3.01
6285 8452 3.133003 CCTAGTGTCTGATACCAACCTGG 59.867 52.174 0.57 0.00 45.02 4.45
6289 8456 2.165845 ACGCCTAGTGTCTGATACCAAC 59.834 50.000 0.57 0.00 0.00 3.77
6295 8462 1.135373 CGACAACGCCTAGTGTCTGAT 60.135 52.381 8.94 0.00 32.50 2.90
6324 8491 0.465278 GAGGGGCAGGCTTCATTCTC 60.465 60.000 0.00 0.00 0.00 2.87
6378 8545 3.797353 GGAGGCCATGGCGGAGAA 61.797 66.667 29.90 0.00 43.06 2.87
6406 8573 1.290955 GAACCATCGTGGGTGTCGA 59.709 57.895 8.57 0.00 37.76 4.20
6417 8584 7.161773 TGAAAATGAATTGAGAGGAACCATC 57.838 36.000 0.00 0.00 0.00 3.51
6435 8605 2.485302 GCAGGGGTTTTGTGCTGAAAAT 60.485 45.455 0.00 0.00 34.23 1.82
6453 8623 1.558756 AGAATTGTCCTGAGGAGGCAG 59.441 52.381 0.00 0.00 39.57 4.85
6454 8624 1.556911 GAGAATTGTCCTGAGGAGGCA 59.443 52.381 0.00 0.00 39.57 4.75
6455 8625 1.556911 TGAGAATTGTCCTGAGGAGGC 59.443 52.381 0.00 0.00 39.57 4.70
6457 8627 5.353678 GTGAATTGAGAATTGTCCTGAGGAG 59.646 44.000 0.00 0.00 29.39 3.69
6458 8628 5.248640 GTGAATTGAGAATTGTCCTGAGGA 58.751 41.667 0.00 0.00 0.00 3.71
6460 8630 4.397417 GGGTGAATTGAGAATTGTCCTGAG 59.603 45.833 0.00 0.00 0.00 3.35
6461 8631 4.335416 GGGTGAATTGAGAATTGTCCTGA 58.665 43.478 0.00 0.00 0.00 3.86
6462 8632 3.445096 GGGGTGAATTGAGAATTGTCCTG 59.555 47.826 0.00 0.00 0.00 3.86
6463 8633 3.334881 AGGGGTGAATTGAGAATTGTCCT 59.665 43.478 0.00 0.00 0.00 3.85
6464 8634 3.696548 GAGGGGTGAATTGAGAATTGTCC 59.303 47.826 0.00 0.00 0.00 4.02
6470 8640 3.652869 AGAACAGAGGGGTGAATTGAGAA 59.347 43.478 0.00 0.00 0.00 2.87
6474 8644 2.307098 AGGAGAACAGAGGGGTGAATTG 59.693 50.000 0.00 0.00 0.00 2.32
6476 8646 2.350863 AGGAGAACAGAGGGGTGAAT 57.649 50.000 0.00 0.00 0.00 2.57
6481 8651 1.003696 GGACAAAGGAGAACAGAGGGG 59.996 57.143 0.00 0.00 0.00 4.79
6486 8656 0.035458 AGCGGGACAAAGGAGAACAG 59.965 55.000 0.00 0.00 0.00 3.16
6505 8675 2.033448 GTGTCGATGTTGGGGGCA 59.967 61.111 0.00 0.00 0.00 5.36
6516 8686 1.970114 GACGAGTGGGAGGTGTCGA 60.970 63.158 0.00 0.00 36.30 4.20
6519 8689 2.207924 GGTGACGAGTGGGAGGTGT 61.208 63.158 0.00 0.00 0.00 4.16
6532 8702 3.993382 TCACTAAACACGGGGTGAC 57.007 52.632 2.29 0.00 36.96 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.