Multiple sequence alignment - TraesCS6A01G074000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G074000 chr6A 100.000 1486 0 0 944 2429 42007739 42009224 0.000000e+00 2745.0
1 TraesCS6A01G074000 chr6A 100.000 579 0 0 1 579 42006796 42007374 0.000000e+00 1070.0
2 TraesCS6A01G074000 chr6A 82.836 670 68 18 945 1574 41998227 41998889 7.590000e-155 556.0
3 TraesCS6A01G074000 chr6A 90.833 120 11 0 2310 2429 46780210 46780329 6.950000e-36 161.0
4 TraesCS6A01G074000 chr6A 77.928 222 38 7 991 1202 27745707 27745927 7.050000e-26 128.0
5 TraesCS6A01G074000 chr6A 77.103 214 39 6 991 1195 27699955 27700167 5.490000e-22 115.0
6 TraesCS6A01G074000 chr6A 84.722 72 3 5 982 1053 31049260 31049197 5.610000e-07 65.8
7 TraesCS6A01G074000 chrUn 83.248 1176 108 44 945 2064 105398730 105397588 0.000000e+00 998.0
8 TraesCS6A01G074000 chrUn 93.202 456 29 2 44 497 105399325 105398870 0.000000e+00 669.0
9 TraesCS6A01G074000 chrUn 82.335 668 71 20 945 1574 105403292 105402634 9.880000e-149 536.0
10 TraesCS6A01G074000 chrUn 78.378 222 37 7 991 1202 112241729 112241949 1.520000e-27 134.0
11 TraesCS6A01G074000 chr6B 88.777 695 44 14 945 1614 76387559 76388244 0.000000e+00 821.0
12 TraesCS6A01G074000 chr6B 94.180 378 19 3 132 506 76387063 76387440 7.530000e-160 573.0
13 TraesCS6A01G074000 chr6B 81.727 498 65 12 1627 2104 76388858 76389349 2.260000e-105 392.0
14 TraesCS6A01G074000 chr6B 93.421 76 5 0 504 579 76387467 76387542 1.970000e-21 113.0
15 TraesCS6A01G074000 chr6B 76.279 215 41 6 998 1202 48479452 48479666 3.300000e-19 106.0
16 TraesCS6A01G074000 chr6B 75.248 202 44 6 998 1196 48538773 48538971 9.250000e-15 91.6
17 TraesCS6A01G074000 chr6B 84.211 57 6 2 989 1045 49767777 49767830 4.000000e-03 52.8
18 TraesCS6A01G074000 chr6D 91.406 128 10 1 2183 2309 26703983 26703856 8.930000e-40 174.0
19 TraesCS6A01G074000 chr5D 92.500 120 9 0 2310 2429 534215330 534215211 3.210000e-39 172.0
20 TraesCS6A01G074000 chr5D 91.667 120 10 0 2310 2429 522115066 522115185 1.490000e-37 167.0
21 TraesCS6A01G074000 chr5D 89.683 126 12 1 2185 2309 361215071 361215196 2.500000e-35 159.0
22 TraesCS6A01G074000 chr5D 91.071 112 9 1 2199 2309 46081847 46081736 1.500000e-32 150.0
23 TraesCS6A01G074000 chr2D 92.500 120 9 0 2310 2429 552959596 552959715 3.210000e-39 172.0
24 TraesCS6A01G074000 chr2A 92.373 118 9 0 2311 2428 734342415 734342298 4.150000e-38 169.0
25 TraesCS6A01G074000 chr7D 91.667 120 10 0 2310 2429 320262605 320262724 1.490000e-37 167.0
26 TraesCS6A01G074000 chr7D 91.597 119 10 0 2311 2429 388950549 388950431 5.370000e-37 165.0
27 TraesCS6A01G074000 chr7D 89.683 126 11 2 2305 2429 529467783 529467659 2.500000e-35 159.0
28 TraesCS6A01G074000 chr7D 83.871 124 15 3 998 1117 576753682 576753560 1.970000e-21 113.0
29 TraesCS6A01G074000 chr1A 90.833 120 11 0 2310 2429 230008218 230008099 6.950000e-36 161.0
30 TraesCS6A01G074000 chr4A 89.565 115 11 1 2196 2309 353087316 353087202 7.000000e-31 145.0
31 TraesCS6A01G074000 chr7A 83.784 111 13 3 998 1104 668779129 668779020 1.540000e-17 100.0
32 TraesCS6A01G074000 chr4D 100.000 30 0 0 9 38 7186895 7186866 3.370000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G074000 chr6A 42006796 42009224 2428 False 1907.500000 2745 100.000000 1 2429 2 chr6A.!!$F5 2428
1 TraesCS6A01G074000 chr6A 41998227 41998889 662 False 556.000000 556 82.836000 945 1574 1 chr6A.!!$F3 629
2 TraesCS6A01G074000 chrUn 105397588 105403292 5704 True 734.333333 998 86.261667 44 2064 3 chrUn.!!$R1 2020
3 TraesCS6A01G074000 chr6B 76387063 76389349 2286 False 474.750000 821 89.526250 132 2104 4 chr6B.!!$F4 1972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 4530 0.965363 ACGGCCCGCATTTTCATCTT 60.965 50.0 1.23 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2354 7000 0.03716 ATGTGAGGTGCAGTGCATCA 59.963 50.0 29.29 22.26 42.9 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.833082 TCTCTATCCTGAATTACTTGTCGC 58.167 41.667 0.00 0.00 0.00 5.19
32 33 5.359860 TCTCTATCCTGAATTACTTGTCGCA 59.640 40.000 0.00 0.00 0.00 5.10
33 34 5.592054 TCTATCCTGAATTACTTGTCGCAG 58.408 41.667 0.00 0.00 0.00 5.18
34 35 3.953712 TCCTGAATTACTTGTCGCAGA 57.046 42.857 0.00 0.00 0.00 4.26
35 36 4.265904 TCCTGAATTACTTGTCGCAGAA 57.734 40.909 0.00 0.00 39.69 3.02
36 37 4.637276 TCCTGAATTACTTGTCGCAGAAA 58.363 39.130 0.00 0.00 39.69 2.52
37 38 5.245531 TCCTGAATTACTTGTCGCAGAAAT 58.754 37.500 0.00 0.00 39.69 2.17
39 40 5.122239 CCTGAATTACTTGTCGCAGAAATCA 59.878 40.000 0.00 0.00 39.69 2.57
41 42 6.964908 TGAATTACTTGTCGCAGAAATCAAA 58.035 32.000 0.00 0.00 39.69 2.69
43 44 6.560253 ATTACTTGTCGCAGAAATCAAAGT 57.440 33.333 0.00 0.00 39.69 2.66
44 45 7.667043 ATTACTTGTCGCAGAAATCAAAGTA 57.333 32.000 0.00 0.00 39.69 2.24
46 47 5.057149 ACTTGTCGCAGAAATCAAAGTAGT 58.943 37.500 0.00 0.00 39.69 2.73
47 48 5.527582 ACTTGTCGCAGAAATCAAAGTAGTT 59.472 36.000 0.00 0.00 39.69 2.24
48 49 6.038271 ACTTGTCGCAGAAATCAAAGTAGTTT 59.962 34.615 0.00 0.00 39.69 2.66
49 50 6.371809 TGTCGCAGAAATCAAAGTAGTTTT 57.628 33.333 0.00 0.00 39.69 2.43
50 51 6.791303 TGTCGCAGAAATCAAAGTAGTTTTT 58.209 32.000 0.00 0.00 39.69 1.94
51 52 7.921787 TGTCGCAGAAATCAAAGTAGTTTTTA 58.078 30.769 0.00 0.00 39.69 1.52
53 54 7.059602 GTCGCAGAAATCAAAGTAGTTTTTAGC 59.940 37.037 0.00 0.00 39.69 3.09
73 3999 2.352519 GCGATCTGCTAGATGATGCTCA 60.353 50.000 0.00 0.00 41.73 4.26
78 4004 5.548181 TCTGCTAGATGATGCTCAATCTT 57.452 39.130 0.00 0.00 36.15 2.40
95 4021 9.853921 GCTCAATCTTCTAAACAAAAACATTTG 57.146 29.630 0.03 0.03 37.89 2.32
110 4036 4.725790 ACATTTGCCCTGAAATAGCTTC 57.274 40.909 0.00 0.00 34.31 3.86
118 4045 3.323403 CCCTGAAATAGCTTCGGAGATCT 59.677 47.826 0.00 0.00 42.31 2.75
151 4078 1.531149 CTTAGTGTGTCAAACTGCCGG 59.469 52.381 5.87 0.00 0.00 6.13
208 4135 6.166984 TCATAAGGCTAGTGAAATCAGAGG 57.833 41.667 0.00 0.00 0.00 3.69
213 4140 3.194062 GCTAGTGAAATCAGAGGTGAGC 58.806 50.000 0.00 0.00 35.66 4.26
264 4191 9.725019 ATGATCAAACATTCTAAACAGTCTACA 57.275 29.630 0.00 0.00 0.00 2.74
481 4409 7.661437 AGATTAATTAGCTGTCGGCAATTGATA 59.339 33.333 10.34 0.00 44.79 2.15
520 4479 3.599285 TTTAGCGGCCCGTGAGTGG 62.599 63.158 4.45 0.00 0.00 4.00
569 4530 0.965363 ACGGCCCGCATTTTCATCTT 60.965 50.000 1.23 0.00 0.00 2.40
574 4535 1.818060 CCCGCATTTTCATCTTCCACA 59.182 47.619 0.00 0.00 0.00 4.17
971 4932 5.882557 AGCACTTGTCTTCTTTTCTTCTTCA 59.117 36.000 0.00 0.00 0.00 3.02
974 4935 7.378194 GCACTTGTCTTCTTTTCTTCTTCATTC 59.622 37.037 0.00 0.00 0.00 2.67
1098 5061 0.319555 CCAAGTCCGAGTTCTGCGAA 60.320 55.000 0.00 0.00 0.00 4.70
1164 5127 2.665185 GCCTGCGTTCCGTTCTGT 60.665 61.111 0.00 0.00 0.00 3.41
1260 5226 3.068590 CCTGTGCCAAAGTCAAAATCTGT 59.931 43.478 0.00 0.00 0.00 3.41
1295 5268 3.870633 GTCCAGTAAGACGATGGAACT 57.129 47.619 0.00 0.00 44.45 3.01
1297 5270 4.922719 GTCCAGTAAGACGATGGAACTAG 58.077 47.826 0.00 0.00 44.45 2.57
1301 5274 3.633065 AGTAAGACGATGGAACTAGCTCC 59.367 47.826 5.14 5.14 35.88 4.70
1444 5425 5.250774 TGCCTCTAGGAGTTTGGTCTTAATT 59.749 40.000 0.00 0.00 37.39 1.40
1445 5426 6.442564 TGCCTCTAGGAGTTTGGTCTTAATTA 59.557 38.462 0.00 0.00 37.39 1.40
1446 5427 7.037873 TGCCTCTAGGAGTTTGGTCTTAATTAA 60.038 37.037 0.00 0.00 37.39 1.40
1447 5428 7.993758 GCCTCTAGGAGTTTGGTCTTAATTAAT 59.006 37.037 0.00 0.00 37.39 1.40
1474 5477 1.280982 CTGGTCGACCATGATCGTTG 58.719 55.000 36.21 18.79 46.46 4.10
1493 5496 4.328712 CGTTGATATGATGTTGAACGGACA 59.671 41.667 0.00 0.00 34.12 4.02
1502 5505 5.121611 TGATGTTGAACGGACATGATTGTAC 59.878 40.000 0.00 0.00 37.83 2.90
1582 5605 6.402983 CCAAGATCTGAAGAGTTTTCCATTCG 60.403 42.308 0.00 0.00 0.00 3.34
1612 5635 7.692908 ACATTTTAACAGTTTGTCGATTTGG 57.307 32.000 0.00 0.00 0.00 3.28
1613 5636 7.262048 ACATTTTAACAGTTTGTCGATTTGGT 58.738 30.769 0.00 0.00 0.00 3.67
1614 5637 7.221838 ACATTTTAACAGTTTGTCGATTTGGTG 59.778 33.333 0.00 0.00 0.00 4.17
1615 5638 2.774439 ACAGTTTGTCGATTTGGTGC 57.226 45.000 0.00 0.00 0.00 5.01
1616 5639 2.020720 ACAGTTTGTCGATTTGGTGCA 58.979 42.857 0.00 0.00 0.00 4.57
1618 5641 1.002900 AGTTTGTCGATTTGGTGCACG 60.003 47.619 11.45 0.00 0.00 5.34
1635 6258 2.076100 CACGGCTTTGATTGTAGCAGA 58.924 47.619 0.00 0.00 39.15 4.26
1656 6279 9.147732 AGCAGAAAATATAAGAATAAAAGGGGG 57.852 33.333 0.00 0.00 0.00 5.40
1699 6322 5.529581 TCACTTCTGTGGATATTATCGCA 57.470 39.130 0.00 0.00 43.94 5.10
1712 6335 4.985044 ATTATCGCAATACGTGTAAGCC 57.015 40.909 0.00 0.00 44.19 4.35
1808 6438 1.040646 TCCAATGCCCTAGTAGAGCG 58.959 55.000 0.00 0.00 0.00 5.03
1817 6447 4.081309 TGCCCTAGTAGAGCGTACAAATTT 60.081 41.667 0.00 0.00 0.00 1.82
1832 6462 6.128876 CGTACAAATTTTCATGCAGCAATCAA 60.129 34.615 0.00 0.00 0.00 2.57
1837 6467 5.849357 TTTTCATGCAGCAATCAACAATC 57.151 34.783 0.00 0.00 0.00 2.67
1839 6469 2.826725 TCATGCAGCAATCAACAATCCA 59.173 40.909 0.00 0.00 0.00 3.41
1840 6470 2.728690 TGCAGCAATCAACAATCCAC 57.271 45.000 0.00 0.00 0.00 4.02
1853 6496 5.010516 TCAACAATCCACGTGAATTCCAAAT 59.989 36.000 19.30 0.00 0.00 2.32
1859 6502 5.764131 TCCACGTGAATTCCAAATACAAAC 58.236 37.500 19.30 0.00 0.00 2.93
1870 6513 7.687005 TTCCAAATACAAACGAAATTGTGAC 57.313 32.000 13.50 0.00 43.13 3.67
1872 6515 5.116377 CCAAATACAAACGAAATTGTGACGG 59.884 40.000 13.50 7.16 43.13 4.79
1942 6586 0.829333 AAACTTGCCAACATGCACCA 59.171 45.000 0.00 0.00 41.88 4.17
1943 6587 0.390124 AACTTGCCAACATGCACCAG 59.610 50.000 0.00 0.00 41.88 4.00
1958 6602 4.869215 TGCACCAGTGACATTTTTATGTG 58.131 39.130 0.99 0.00 34.45 3.21
1966 6610 7.543172 CCAGTGACATTTTTATGTGGAAGAATG 59.457 37.037 0.00 0.00 34.45 2.67
1987 6631 7.778853 AGAATGATTGCATGAAAGGTCTTCTAT 59.221 33.333 0.00 0.00 34.26 1.98
2021 6665 8.883731 CGGAGTTCATGTTTCTACTTATGAAAT 58.116 33.333 0.00 0.00 40.14 2.17
2046 6690 4.276678 CAGCAAATTCCTTGTCTCACAGAA 59.723 41.667 0.00 0.00 37.36 3.02
2066 6711 8.514594 CACAGAACAGATGGTGTATAAATTGTT 58.485 33.333 0.00 0.00 39.03 2.83
2076 6721 8.630054 TGGTGTATAAATTGTTAGAGCAACTT 57.370 30.769 0.00 0.00 38.05 2.66
2078 6723 9.341899 GGTGTATAAATTGTTAGAGCAACTTTG 57.658 33.333 0.00 0.00 38.05 2.77
2096 6742 5.096169 ACTTTGACAGAGTCGTCATATTCG 58.904 41.667 15.31 5.69 45.03 3.34
2099 6745 3.119637 TGACAGAGTCGTCATATTCGCAA 60.120 43.478 11.96 0.00 40.94 4.85
2104 6750 1.521006 GTCGTCATATTCGCAATCGCA 59.479 47.619 0.00 0.00 38.40 5.10
2105 6751 2.034086 GTCGTCATATTCGCAATCGCAA 60.034 45.455 0.00 0.00 38.40 4.85
2106 6752 2.034086 TCGTCATATTCGCAATCGCAAC 60.034 45.455 0.00 0.00 38.40 4.17
2107 6753 2.639751 GTCATATTCGCAATCGCAACC 58.360 47.619 0.00 0.00 38.40 3.77
2108 6754 2.287915 GTCATATTCGCAATCGCAACCT 59.712 45.455 0.00 0.00 38.40 3.50
2109 6755 2.543848 TCATATTCGCAATCGCAACCTC 59.456 45.455 0.00 0.00 38.40 3.85
2110 6756 1.295792 TATTCGCAATCGCAACCTCC 58.704 50.000 0.00 0.00 38.40 4.30
2111 6757 0.676466 ATTCGCAATCGCAACCTCCA 60.676 50.000 0.00 0.00 38.40 3.86
2112 6758 0.676466 TTCGCAATCGCAACCTCCAT 60.676 50.000 0.00 0.00 38.40 3.41
2113 6759 0.176910 TCGCAATCGCAACCTCCATA 59.823 50.000 0.00 0.00 38.40 2.74
2114 6760 1.013596 CGCAATCGCAACCTCCATAA 58.986 50.000 0.00 0.00 38.40 1.90
2115 6761 1.603802 CGCAATCGCAACCTCCATAAT 59.396 47.619 0.00 0.00 38.40 1.28
2116 6762 2.033299 CGCAATCGCAACCTCCATAATT 59.967 45.455 0.00 0.00 38.40 1.40
2117 6763 3.374745 GCAATCGCAACCTCCATAATTG 58.625 45.455 0.00 0.00 38.36 2.32
2118 6764 3.181487 GCAATCGCAACCTCCATAATTGT 60.181 43.478 0.00 0.00 38.36 2.71
2119 6765 4.601019 CAATCGCAACCTCCATAATTGTC 58.399 43.478 0.00 0.00 0.00 3.18
2120 6766 2.639065 TCGCAACCTCCATAATTGTCC 58.361 47.619 0.00 0.00 0.00 4.02
2121 6767 2.238646 TCGCAACCTCCATAATTGTCCT 59.761 45.455 0.00 0.00 0.00 3.85
2122 6768 3.452990 TCGCAACCTCCATAATTGTCCTA 59.547 43.478 0.00 0.00 0.00 2.94
2123 6769 3.560068 CGCAACCTCCATAATTGTCCTAC 59.440 47.826 0.00 0.00 0.00 3.18
2124 6770 4.523083 GCAACCTCCATAATTGTCCTACA 58.477 43.478 0.00 0.00 0.00 2.74
2125 6771 5.133221 GCAACCTCCATAATTGTCCTACAT 58.867 41.667 0.00 0.00 0.00 2.29
2126 6772 6.296026 GCAACCTCCATAATTGTCCTACATA 58.704 40.000 0.00 0.00 0.00 2.29
2127 6773 6.770785 GCAACCTCCATAATTGTCCTACATAA 59.229 38.462 0.00 0.00 0.00 1.90
2128 6774 7.041098 GCAACCTCCATAATTGTCCTACATAAG 60.041 40.741 0.00 0.00 0.00 1.73
2151 6797 7.136822 AGGAACTTATATGTCATTGCCTACA 57.863 36.000 0.00 0.00 27.25 2.74
2152 6798 7.749666 AGGAACTTATATGTCATTGCCTACAT 58.250 34.615 0.00 0.00 36.12 2.29
2153 6799 8.880244 AGGAACTTATATGTCATTGCCTACATA 58.120 33.333 0.00 0.00 38.04 2.29
2154 6800 8.936864 GGAACTTATATGTCATTGCCTACATAC 58.063 37.037 0.00 0.00 40.40 2.39
2155 6801 9.712305 GAACTTATATGTCATTGCCTACATACT 57.288 33.333 0.00 0.00 40.40 2.12
2156 6802 9.712305 AACTTATATGTCATTGCCTACATACTC 57.288 33.333 0.00 0.00 40.40 2.59
2157 6803 8.870116 ACTTATATGTCATTGCCTACATACTCA 58.130 33.333 0.00 0.00 40.40 3.41
2158 6804 9.881649 CTTATATGTCATTGCCTACATACTCAT 57.118 33.333 0.00 0.00 40.40 2.90
2160 6806 8.783833 ATATGTCATTGCCTACATACTCATTC 57.216 34.615 0.00 0.00 40.40 2.67
2161 6807 6.239217 TGTCATTGCCTACATACTCATTCT 57.761 37.500 0.00 0.00 0.00 2.40
2162 6808 6.283694 TGTCATTGCCTACATACTCATTCTC 58.716 40.000 0.00 0.00 0.00 2.87
2163 6809 5.698545 GTCATTGCCTACATACTCATTCTCC 59.301 44.000 0.00 0.00 0.00 3.71
2164 6810 5.366477 TCATTGCCTACATACTCATTCTCCA 59.634 40.000 0.00 0.00 0.00 3.86
2165 6811 5.692115 TTGCCTACATACTCATTCTCCAA 57.308 39.130 0.00 0.00 0.00 3.53
2166 6812 5.894298 TGCCTACATACTCATTCTCCAAT 57.106 39.130 0.00 0.00 0.00 3.16
2167 6813 6.252599 TGCCTACATACTCATTCTCCAATT 57.747 37.500 0.00 0.00 0.00 2.32
2168 6814 6.662755 TGCCTACATACTCATTCTCCAATTT 58.337 36.000 0.00 0.00 0.00 1.82
2169 6815 6.767902 TGCCTACATACTCATTCTCCAATTTC 59.232 38.462 0.00 0.00 0.00 2.17
2170 6816 6.995091 GCCTACATACTCATTCTCCAATTTCT 59.005 38.462 0.00 0.00 0.00 2.52
2171 6817 7.500559 GCCTACATACTCATTCTCCAATTTCTT 59.499 37.037 0.00 0.00 0.00 2.52
2174 6820 8.443953 ACATACTCATTCTCCAATTTCTTAGC 57.556 34.615 0.00 0.00 0.00 3.09
2175 6821 8.270744 ACATACTCATTCTCCAATTTCTTAGCT 58.729 33.333 0.00 0.00 0.00 3.32
2176 6822 9.118300 CATACTCATTCTCCAATTTCTTAGCTT 57.882 33.333 0.00 0.00 0.00 3.74
2177 6823 7.622893 ACTCATTCTCCAATTTCTTAGCTTC 57.377 36.000 0.00 0.00 0.00 3.86
2178 6824 7.401246 ACTCATTCTCCAATTTCTTAGCTTCT 58.599 34.615 0.00 0.00 0.00 2.85
2179 6825 8.543774 ACTCATTCTCCAATTTCTTAGCTTCTA 58.456 33.333 0.00 0.00 0.00 2.10
2180 6826 8.723942 TCATTCTCCAATTTCTTAGCTTCTAC 57.276 34.615 0.00 0.00 0.00 2.59
2181 6827 8.543774 TCATTCTCCAATTTCTTAGCTTCTACT 58.456 33.333 0.00 0.00 0.00 2.57
2182 6828 8.610896 CATTCTCCAATTTCTTAGCTTCTACTG 58.389 37.037 0.00 0.00 0.00 2.74
2183 6829 7.246171 TCTCCAATTTCTTAGCTTCTACTGT 57.754 36.000 0.00 0.00 0.00 3.55
2184 6830 7.324178 TCTCCAATTTCTTAGCTTCTACTGTC 58.676 38.462 0.00 0.00 0.00 3.51
2185 6831 7.004555 TCCAATTTCTTAGCTTCTACTGTCA 57.995 36.000 0.00 0.00 0.00 3.58
2186 6832 7.099764 TCCAATTTCTTAGCTTCTACTGTCAG 58.900 38.462 0.00 0.00 0.00 3.51
2187 6833 6.183360 CCAATTTCTTAGCTTCTACTGTCAGC 60.183 42.308 0.00 0.00 0.00 4.26
2188 6834 5.468540 TTTCTTAGCTTCTACTGTCAGCA 57.531 39.130 0.00 0.00 35.88 4.41
2189 6835 5.468540 TTCTTAGCTTCTACTGTCAGCAA 57.531 39.130 0.00 0.00 35.88 3.91
2190 6836 5.667539 TCTTAGCTTCTACTGTCAGCAAT 57.332 39.130 0.00 0.00 35.88 3.56
2191 6837 5.414360 TCTTAGCTTCTACTGTCAGCAATG 58.586 41.667 0.00 0.00 35.88 2.82
2192 6838 3.692257 AGCTTCTACTGTCAGCAATGT 57.308 42.857 0.00 0.00 35.88 2.71
2193 6839 3.594134 AGCTTCTACTGTCAGCAATGTC 58.406 45.455 0.00 0.00 35.88 3.06
2194 6840 2.675348 GCTTCTACTGTCAGCAATGTCC 59.325 50.000 0.00 0.00 33.45 4.02
2195 6841 3.265791 CTTCTACTGTCAGCAATGTCCC 58.734 50.000 0.00 0.00 0.00 4.46
2196 6842 2.540383 TCTACTGTCAGCAATGTCCCT 58.460 47.619 0.00 0.00 0.00 4.20
2197 6843 2.906389 TCTACTGTCAGCAATGTCCCTT 59.094 45.455 0.00 0.00 0.00 3.95
2198 6844 2.191128 ACTGTCAGCAATGTCCCTTC 57.809 50.000 0.00 0.00 0.00 3.46
2199 6845 1.701847 ACTGTCAGCAATGTCCCTTCT 59.298 47.619 0.00 0.00 0.00 2.85
2200 6846 2.082231 CTGTCAGCAATGTCCCTTCTG 58.918 52.381 0.00 0.00 0.00 3.02
2201 6847 1.699083 TGTCAGCAATGTCCCTTCTGA 59.301 47.619 0.00 0.00 0.00 3.27
2202 6848 2.289882 TGTCAGCAATGTCCCTTCTGAG 60.290 50.000 0.00 0.00 34.84 3.35
2203 6849 1.093159 CAGCAATGTCCCTTCTGAGC 58.907 55.000 0.00 0.00 0.00 4.26
2204 6850 0.990374 AGCAATGTCCCTTCTGAGCT 59.010 50.000 0.00 0.00 0.00 4.09
2205 6851 1.353694 AGCAATGTCCCTTCTGAGCTT 59.646 47.619 0.00 0.00 0.00 3.74
2206 6852 1.471684 GCAATGTCCCTTCTGAGCTTG 59.528 52.381 0.00 0.00 0.00 4.01
2207 6853 2.787994 CAATGTCCCTTCTGAGCTTGT 58.212 47.619 0.00 0.00 0.00 3.16
2208 6854 3.152341 CAATGTCCCTTCTGAGCTTGTT 58.848 45.455 0.00 0.00 0.00 2.83
2209 6855 2.260844 TGTCCCTTCTGAGCTTGTTG 57.739 50.000 0.00 0.00 0.00 3.33
2210 6856 0.877743 GTCCCTTCTGAGCTTGTTGC 59.122 55.000 0.00 0.00 43.29 4.17
2211 6857 0.473755 TCCCTTCTGAGCTTGTTGCA 59.526 50.000 0.00 0.00 45.94 4.08
2212 6858 0.595095 CCCTTCTGAGCTTGTTGCAC 59.405 55.000 0.00 0.00 45.94 4.57
2213 6859 0.595095 CCTTCTGAGCTTGTTGCACC 59.405 55.000 0.00 0.00 45.94 5.01
2214 6860 1.602311 CTTCTGAGCTTGTTGCACCT 58.398 50.000 0.00 0.00 45.94 4.00
2215 6861 1.266175 CTTCTGAGCTTGTTGCACCTG 59.734 52.381 0.00 0.00 45.94 4.00
2216 6862 0.181114 TCTGAGCTTGTTGCACCTGT 59.819 50.000 0.00 0.00 45.94 4.00
2217 6863 1.416030 TCTGAGCTTGTTGCACCTGTA 59.584 47.619 0.00 0.00 45.94 2.74
2218 6864 2.038952 TCTGAGCTTGTTGCACCTGTAT 59.961 45.455 0.00 0.00 45.94 2.29
2219 6865 2.153645 TGAGCTTGTTGCACCTGTATG 58.846 47.619 0.00 0.00 45.94 2.39
2220 6866 2.154462 GAGCTTGTTGCACCTGTATGT 58.846 47.619 0.00 0.00 45.94 2.29
2221 6867 1.881973 AGCTTGTTGCACCTGTATGTG 59.118 47.619 0.00 0.00 45.94 3.21
2222 6868 1.068333 GCTTGTTGCACCTGTATGTGG 60.068 52.381 0.00 0.00 42.31 4.17
2223 6869 0.958091 TTGTTGCACCTGTATGTGGC 59.042 50.000 0.00 0.00 36.73 5.01
2224 6870 0.893270 TGTTGCACCTGTATGTGGCC 60.893 55.000 0.00 0.00 36.73 5.36
2225 6871 0.609131 GTTGCACCTGTATGTGGCCT 60.609 55.000 3.32 0.00 36.73 5.19
2226 6872 0.322456 TTGCACCTGTATGTGGCCTC 60.322 55.000 3.32 0.00 36.73 4.70
2227 6873 1.200760 TGCACCTGTATGTGGCCTCT 61.201 55.000 3.32 0.00 36.73 3.69
2228 6874 0.830648 GCACCTGTATGTGGCCTCTA 59.169 55.000 3.32 0.00 36.73 2.43
2229 6875 1.417890 GCACCTGTATGTGGCCTCTAT 59.582 52.381 3.32 0.00 36.73 1.98
2230 6876 2.548920 GCACCTGTATGTGGCCTCTATC 60.549 54.545 3.32 0.00 36.73 2.08
2231 6877 2.700371 CACCTGTATGTGGCCTCTATCA 59.300 50.000 3.32 0.47 32.50 2.15
2232 6878 3.326006 CACCTGTATGTGGCCTCTATCAT 59.674 47.826 3.32 3.91 32.50 2.45
2233 6879 4.528206 CACCTGTATGTGGCCTCTATCATA 59.472 45.833 3.32 2.95 32.50 2.15
2234 6880 5.012046 CACCTGTATGTGGCCTCTATCATAA 59.988 44.000 3.32 0.00 32.50 1.90
2235 6881 5.787494 ACCTGTATGTGGCCTCTATCATAAT 59.213 40.000 3.32 0.00 0.00 1.28
2236 6882 6.959954 ACCTGTATGTGGCCTCTATCATAATA 59.040 38.462 3.32 0.00 0.00 0.98
2237 6883 7.093289 ACCTGTATGTGGCCTCTATCATAATAC 60.093 40.741 3.32 3.43 0.00 1.89
2238 6884 7.124901 CCTGTATGTGGCCTCTATCATAATACT 59.875 40.741 3.32 0.00 0.00 2.12
2239 6885 7.840931 TGTATGTGGCCTCTATCATAATACTG 58.159 38.462 3.32 0.00 0.00 2.74
2240 6886 7.673926 TGTATGTGGCCTCTATCATAATACTGA 59.326 37.037 3.32 0.00 0.00 3.41
2241 6887 6.346477 TGTGGCCTCTATCATAATACTGAC 57.654 41.667 3.32 0.00 0.00 3.51
2242 6888 5.838521 TGTGGCCTCTATCATAATACTGACA 59.161 40.000 3.32 0.00 0.00 3.58
2243 6889 6.015095 TGTGGCCTCTATCATAATACTGACAG 60.015 42.308 3.32 0.00 0.00 3.51
2244 6890 6.209589 GTGGCCTCTATCATAATACTGACAGA 59.790 42.308 10.08 0.00 28.61 3.41
2245 6891 6.435591 TGGCCTCTATCATAATACTGACAGAG 59.564 42.308 10.08 3.03 43.41 3.35
2246 6892 6.661377 GGCCTCTATCATAATACTGACAGAGA 59.339 42.308 10.08 0.00 45.56 3.10
2247 6893 7.362574 GGCCTCTATCATAATACTGACAGAGAC 60.363 44.444 10.08 0.01 45.56 3.36
2248 6894 7.625395 GCCTCTATCATAATACTGACAGAGACG 60.625 44.444 10.08 0.00 45.56 4.18
2249 6895 7.604545 CCTCTATCATAATACTGACAGAGACGA 59.395 40.741 10.08 0.00 45.56 4.20
2250 6896 8.312896 TCTATCATAATACTGACAGAGACGAC 57.687 38.462 10.08 0.00 26.15 4.34
2251 6897 5.752892 TCATAATACTGACAGAGACGACC 57.247 43.478 10.08 0.00 0.00 4.79
2252 6898 5.437946 TCATAATACTGACAGAGACGACCT 58.562 41.667 10.08 0.00 0.00 3.85
2253 6899 6.589135 TCATAATACTGACAGAGACGACCTA 58.411 40.000 10.08 0.00 0.00 3.08
2254 6900 6.706716 TCATAATACTGACAGAGACGACCTAG 59.293 42.308 10.08 0.00 0.00 3.02
2255 6901 1.455248 ACTGACAGAGACGACCTAGC 58.545 55.000 10.08 0.00 0.00 3.42
2256 6902 0.375454 CTGACAGAGACGACCTAGCG 59.625 60.000 0.00 0.00 37.29 4.26
2257 6903 1.025113 TGACAGAGACGACCTAGCGG 61.025 60.000 0.00 0.00 35.12 5.52
2258 6904 1.716826 GACAGAGACGACCTAGCGGG 61.717 65.000 0.00 0.00 41.89 6.13
2267 6913 2.831742 CCTAGCGGGTCGTGCCTA 60.832 66.667 0.00 0.00 37.43 3.93
2268 6914 2.420568 CCTAGCGGGTCGTGCCTAA 61.421 63.158 0.00 0.00 37.43 2.69
2269 6915 1.740285 CTAGCGGGTCGTGCCTAAT 59.260 57.895 0.00 0.00 37.43 1.73
2270 6916 0.104304 CTAGCGGGTCGTGCCTAATT 59.896 55.000 0.00 0.00 37.43 1.40
2271 6917 0.538118 TAGCGGGTCGTGCCTAATTT 59.462 50.000 0.00 0.00 37.43 1.82
2272 6918 0.743345 AGCGGGTCGTGCCTAATTTC 60.743 55.000 0.00 0.00 37.43 2.17
2273 6919 1.712018 GCGGGTCGTGCCTAATTTCC 61.712 60.000 0.00 0.00 37.43 3.13
2274 6920 0.107848 CGGGTCGTGCCTAATTTCCT 60.108 55.000 0.00 0.00 37.43 3.36
2275 6921 1.379527 GGGTCGTGCCTAATTTCCTG 58.620 55.000 0.00 0.00 37.43 3.86
2276 6922 1.379527 GGTCGTGCCTAATTTCCTGG 58.620 55.000 0.00 0.00 0.00 4.45
2277 6923 1.065709 GGTCGTGCCTAATTTCCTGGA 60.066 52.381 0.00 0.00 0.00 3.86
2278 6924 2.280628 GTCGTGCCTAATTTCCTGGAG 58.719 52.381 0.00 0.00 0.00 3.86
2279 6925 1.906574 TCGTGCCTAATTTCCTGGAGT 59.093 47.619 0.00 0.00 0.00 3.85
2280 6926 2.009774 CGTGCCTAATTTCCTGGAGTG 58.990 52.381 0.00 0.00 0.00 3.51
2281 6927 1.745653 GTGCCTAATTTCCTGGAGTGC 59.254 52.381 0.00 0.00 0.00 4.40
2282 6928 1.354031 TGCCTAATTTCCTGGAGTGCA 59.646 47.619 0.00 0.00 0.00 4.57
2283 6929 1.745653 GCCTAATTTCCTGGAGTGCAC 59.254 52.381 9.40 9.40 0.00 4.57
2284 6930 2.369394 CCTAATTTCCTGGAGTGCACC 58.631 52.381 14.63 4.90 0.00 5.01
2285 6931 2.025887 CCTAATTTCCTGGAGTGCACCT 60.026 50.000 14.63 0.04 0.00 4.00
2286 6932 3.199946 CCTAATTTCCTGGAGTGCACCTA 59.800 47.826 14.63 2.04 0.00 3.08
2287 6933 2.789409 ATTTCCTGGAGTGCACCTAC 57.211 50.000 14.63 4.54 0.00 3.18
2288 6934 1.429930 TTTCCTGGAGTGCACCTACA 58.570 50.000 14.63 9.36 31.40 2.74
2289 6935 1.656587 TTCCTGGAGTGCACCTACAT 58.343 50.000 14.63 0.00 32.03 2.29
2290 6936 1.195115 TCCTGGAGTGCACCTACATC 58.805 55.000 14.63 3.59 32.03 3.06
2291 6937 0.179000 CCTGGAGTGCACCTACATCC 59.821 60.000 14.63 14.09 32.03 3.51
2292 6938 1.198713 CTGGAGTGCACCTACATCCT 58.801 55.000 19.44 0.00 32.03 3.24
2293 6939 1.556911 CTGGAGTGCACCTACATCCTT 59.443 52.381 19.44 0.00 32.03 3.36
2294 6940 1.555075 TGGAGTGCACCTACATCCTTC 59.445 52.381 19.44 6.10 0.00 3.46
2295 6941 1.555075 GGAGTGCACCTACATCCTTCA 59.445 52.381 14.63 0.00 0.00 3.02
2296 6942 2.622436 GAGTGCACCTACATCCTTCAC 58.378 52.381 14.63 0.00 0.00 3.18
2297 6943 1.977854 AGTGCACCTACATCCTTCACA 59.022 47.619 14.63 0.00 0.00 3.58
2298 6944 2.371841 AGTGCACCTACATCCTTCACAA 59.628 45.455 14.63 0.00 0.00 3.33
2299 6945 2.484264 GTGCACCTACATCCTTCACAAC 59.516 50.000 5.22 0.00 0.00 3.32
2300 6946 1.732259 GCACCTACATCCTTCACAACG 59.268 52.381 0.00 0.00 0.00 4.10
2301 6947 1.732259 CACCTACATCCTTCACAACGC 59.268 52.381 0.00 0.00 0.00 4.84
2302 6948 1.338769 ACCTACATCCTTCACAACGCC 60.339 52.381 0.00 0.00 0.00 5.68
2303 6949 1.338674 CCTACATCCTTCACAACGCCA 60.339 52.381 0.00 0.00 0.00 5.69
2304 6950 1.732259 CTACATCCTTCACAACGCCAC 59.268 52.381 0.00 0.00 0.00 5.01
2305 6951 0.179032 ACATCCTTCACAACGCCACA 60.179 50.000 0.00 0.00 0.00 4.17
2306 6952 1.167851 CATCCTTCACAACGCCACAT 58.832 50.000 0.00 0.00 0.00 3.21
2307 6953 1.135603 CATCCTTCACAACGCCACATG 60.136 52.381 0.00 0.00 0.00 3.21
2308 6954 0.107643 TCCTTCACAACGCCACATGA 59.892 50.000 0.00 0.00 0.00 3.07
2309 6955 0.518636 CCTTCACAACGCCACATGAG 59.481 55.000 0.00 0.00 0.00 2.90
2310 6956 1.229428 CTTCACAACGCCACATGAGT 58.771 50.000 0.00 0.00 0.00 3.41
2311 6957 0.943673 TTCACAACGCCACATGAGTG 59.056 50.000 0.00 0.00 45.47 3.51
2312 6958 0.179059 TCACAACGCCACATGAGTGT 60.179 50.000 0.00 0.00 44.39 3.55
2313 6959 0.662619 CACAACGCCACATGAGTGTT 59.337 50.000 0.00 6.66 44.39 3.32
2314 6960 0.944386 ACAACGCCACATGAGTGTTC 59.056 50.000 13.87 0.00 44.39 3.18
2315 6961 0.110688 CAACGCCACATGAGTGTTCG 60.111 55.000 13.87 5.47 44.39 3.95
2316 6962 1.841663 AACGCCACATGAGTGTTCGC 61.842 55.000 0.00 0.00 44.39 4.70
2317 6963 2.316867 CGCCACATGAGTGTTCGCA 61.317 57.895 0.00 0.00 44.39 5.10
2331 6977 2.241537 CGCACACGAACACGTCAC 59.758 61.111 0.00 0.00 43.93 3.67
2332 6978 2.228241 CGCACACGAACACGTCACT 61.228 57.895 0.00 0.00 43.93 3.41
2333 6979 1.272715 GCACACGAACACGTCACTG 59.727 57.895 0.00 0.00 38.21 3.66
2334 6980 1.418342 GCACACGAACACGTCACTGT 61.418 55.000 0.00 0.00 38.21 3.55
2335 6981 0.297525 CACACGAACACGTCACTGTG 59.702 55.000 0.17 0.17 45.41 3.66
2342 6988 3.491581 CACGTCACTGTGTACCCTC 57.508 57.895 7.79 0.00 35.12 4.30
2343 6989 0.386858 CACGTCACTGTGTACCCTCG 60.387 60.000 7.79 7.08 35.12 4.63
2344 6990 0.535780 ACGTCACTGTGTACCCTCGA 60.536 55.000 7.79 0.00 0.00 4.04
2345 6991 0.109873 CGTCACTGTGTACCCTCGAC 60.110 60.000 7.79 0.00 0.00 4.20
2346 6992 0.109873 GTCACTGTGTACCCTCGACG 60.110 60.000 7.79 0.00 0.00 5.12
2347 6993 1.443872 CACTGTGTACCCTCGACGC 60.444 63.158 0.00 0.00 0.00 5.19
2348 6994 2.181021 CTGTGTACCCTCGACGCC 59.819 66.667 0.00 0.00 0.00 5.68
2349 6995 3.678717 CTGTGTACCCTCGACGCCG 62.679 68.421 0.00 0.00 37.07 6.46
2350 6996 4.487412 GTGTACCCTCGACGCCGG 62.487 72.222 0.00 0.00 36.24 6.13
2365 7011 4.720902 CGGGGGTGATGCACTGCA 62.721 66.667 6.09 6.09 44.86 4.41
2366 7012 3.064324 GGGGGTGATGCACTGCAC 61.064 66.667 5.67 7.46 43.04 4.57
2370 7016 4.384599 GTGATGCACTGCACCTCA 57.615 55.556 5.67 4.46 43.04 3.86
2371 7017 1.871772 GTGATGCACTGCACCTCAC 59.128 57.895 17.76 17.76 43.04 3.51
2372 7018 0.886043 GTGATGCACTGCACCTCACA 60.886 55.000 23.89 10.88 43.66 3.58
2373 7019 0.037160 TGATGCACTGCACCTCACAT 59.963 50.000 5.67 0.00 43.04 3.21
2374 7020 1.171308 GATGCACTGCACCTCACATT 58.829 50.000 5.67 0.00 43.04 2.71
2375 7021 0.885879 ATGCACTGCACCTCACATTG 59.114 50.000 5.67 0.00 43.04 2.82
2376 7022 0.179023 TGCACTGCACCTCACATTGA 60.179 50.000 0.00 0.00 31.71 2.57
2377 7023 0.953727 GCACTGCACCTCACATTGAA 59.046 50.000 0.00 0.00 0.00 2.69
2378 7024 1.068748 GCACTGCACCTCACATTGAAG 60.069 52.381 0.00 0.00 0.00 3.02
2379 7025 2.224606 CACTGCACCTCACATTGAAGT 58.775 47.619 0.00 0.00 31.07 3.01
2380 7026 2.620115 CACTGCACCTCACATTGAAGTT 59.380 45.455 0.00 0.00 28.08 2.66
2381 7027 2.620115 ACTGCACCTCACATTGAAGTTG 59.380 45.455 0.00 0.00 25.42 3.16
2382 7028 2.880268 CTGCACCTCACATTGAAGTTGA 59.120 45.455 0.00 0.00 0.00 3.18
2383 7029 2.618241 TGCACCTCACATTGAAGTTGAC 59.382 45.455 0.00 0.00 0.00 3.18
2384 7030 2.030805 GCACCTCACATTGAAGTTGACC 60.031 50.000 0.00 0.00 0.00 4.02
2385 7031 2.554032 CACCTCACATTGAAGTTGACCC 59.446 50.000 0.00 0.00 0.00 4.46
2386 7032 1.806542 CCTCACATTGAAGTTGACCCG 59.193 52.381 0.00 0.00 0.00 5.28
2387 7033 1.806542 CTCACATTGAAGTTGACCCGG 59.193 52.381 0.00 0.00 0.00 5.73
2388 7034 0.240945 CACATTGAAGTTGACCCGGC 59.759 55.000 0.00 0.00 0.00 6.13
2389 7035 0.893727 ACATTGAAGTTGACCCGGCC 60.894 55.000 0.00 0.00 0.00 6.13
2390 7036 1.674322 ATTGAAGTTGACCCGGCCG 60.674 57.895 21.04 21.04 0.00 6.13
2391 7037 3.835790 TTGAAGTTGACCCGGCCGG 62.836 63.158 37.99 37.99 37.81 6.13
2392 7038 4.011517 GAAGTTGACCCGGCCGGA 62.012 66.667 45.44 24.18 37.50 5.14
2393 7039 3.540367 GAAGTTGACCCGGCCGGAA 62.540 63.158 45.44 28.75 37.50 4.30
2394 7040 3.122727 AAGTTGACCCGGCCGGAAA 62.123 57.895 45.44 30.70 37.50 3.13
2395 7041 3.359523 GTTGACCCGGCCGGAAAC 61.360 66.667 45.44 35.66 37.50 2.78
2413 7059 1.934463 CGTGATACGCAGGCAATCC 59.066 57.895 0.00 0.00 33.65 3.01
2414 7060 1.821241 CGTGATACGCAGGCAATCCG 61.821 60.000 0.00 0.00 33.65 4.18
2415 7061 1.227527 TGATACGCAGGCAATCCGG 60.228 57.895 0.00 0.00 37.47 5.14
2425 7071 3.061848 CAATCCGGCGGGTGCTTT 61.062 61.111 27.98 9.46 42.25 3.51
2426 7072 2.282887 AATCCGGCGGGTGCTTTT 60.283 55.556 27.98 0.00 42.25 2.27
2427 7073 2.635443 AATCCGGCGGGTGCTTTTG 61.635 57.895 27.98 0.00 42.25 2.44
2428 7074 3.561120 ATCCGGCGGGTGCTTTTGA 62.561 57.895 27.98 2.79 42.25 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.247562 GCGACAAGTAATTCAGGATAGAGATAT 58.752 37.037 0.00 0.00 0.00 1.63
6 7 7.230712 TGCGACAAGTAATTCAGGATAGAGATA 59.769 37.037 0.00 0.00 0.00 1.98
7 8 6.040955 TGCGACAAGTAATTCAGGATAGAGAT 59.959 38.462 0.00 0.00 0.00 2.75
9 10 5.592054 TGCGACAAGTAATTCAGGATAGAG 58.408 41.667 0.00 0.00 0.00 2.43
10 11 5.359860 TCTGCGACAAGTAATTCAGGATAGA 59.640 40.000 0.00 0.00 0.00 1.98
11 12 5.592054 TCTGCGACAAGTAATTCAGGATAG 58.408 41.667 0.00 0.00 0.00 2.08
12 13 5.592104 TCTGCGACAAGTAATTCAGGATA 57.408 39.130 0.00 0.00 0.00 2.59
13 14 4.471904 TCTGCGACAAGTAATTCAGGAT 57.528 40.909 0.00 0.00 0.00 3.24
16 17 6.169419 TGATTTCTGCGACAAGTAATTCAG 57.831 37.500 0.00 0.00 0.00 3.02
18 19 7.078228 ACTTTGATTTCTGCGACAAGTAATTC 58.922 34.615 0.00 0.00 0.00 2.17
19 20 6.970484 ACTTTGATTTCTGCGACAAGTAATT 58.030 32.000 0.00 0.00 0.00 1.40
20 21 6.560253 ACTTTGATTTCTGCGACAAGTAAT 57.440 33.333 0.00 0.00 0.00 1.89
23 24 5.057149 ACTACTTTGATTTCTGCGACAAGT 58.943 37.500 0.00 0.00 0.00 3.16
24 25 5.597813 ACTACTTTGATTTCTGCGACAAG 57.402 39.130 0.00 0.00 0.00 3.16
26 27 6.371809 AAAACTACTTTGATTTCTGCGACA 57.628 33.333 0.00 0.00 0.00 4.35
29 30 6.031417 CGCTAAAAACTACTTTGATTTCTGCG 59.969 38.462 0.00 0.00 33.62 5.18
31 32 9.267096 GATCGCTAAAAACTACTTTGATTTCTG 57.733 33.333 0.00 0.00 0.00 3.02
32 33 9.220767 AGATCGCTAAAAACTACTTTGATTTCT 57.779 29.630 0.00 0.00 0.00 2.52
33 34 9.267096 CAGATCGCTAAAAACTACTTTGATTTC 57.733 33.333 0.00 0.00 0.00 2.17
34 35 7.750903 GCAGATCGCTAAAAACTACTTTGATTT 59.249 33.333 2.84 0.00 37.77 2.17
35 36 7.244192 GCAGATCGCTAAAAACTACTTTGATT 58.756 34.615 2.84 0.00 37.77 2.57
36 37 6.776094 GCAGATCGCTAAAAACTACTTTGAT 58.224 36.000 2.84 0.00 37.77 2.57
37 38 6.165659 GCAGATCGCTAAAAACTACTTTGA 57.834 37.500 2.84 0.00 37.77 2.69
46 47 8.684761 GAGCATCATCTAGCAGATCGCTAAAAA 61.685 40.741 16.35 8.55 44.01 1.94
47 48 7.282744 GAGCATCATCTAGCAGATCGCTAAAA 61.283 42.308 16.35 10.33 44.01 1.52
48 49 5.849222 GAGCATCATCTAGCAGATCGCTAAA 60.849 44.000 16.35 7.58 44.01 1.85
49 50 4.380339 GAGCATCATCTAGCAGATCGCTAA 60.380 45.833 16.35 10.24 44.01 3.09
50 51 3.128415 GAGCATCATCTAGCAGATCGCTA 59.872 47.826 15.29 15.29 42.85 4.26
51 52 2.094597 GAGCATCATCTAGCAGATCGCT 60.095 50.000 14.75 14.75 45.71 4.93
53 54 3.572604 TGAGCATCATCTAGCAGATCG 57.427 47.619 0.00 0.00 42.56 3.69
73 3999 7.992608 AGGGCAAATGTTTTTGTTTAGAAGATT 59.007 29.630 0.97 0.00 43.43 2.40
78 4004 6.227298 TCAGGGCAAATGTTTTTGTTTAGA 57.773 33.333 0.97 0.00 43.43 2.10
95 4021 1.139058 TCTCCGAAGCTATTTCAGGGC 59.861 52.381 0.00 0.00 35.43 5.19
110 4036 1.495878 GCATGTGTAGCAGATCTCCG 58.504 55.000 0.00 0.00 0.00 4.63
118 4045 1.628340 ACACTAAGGGCATGTGTAGCA 59.372 47.619 0.00 0.00 42.26 3.49
213 4140 5.052172 CGTTCTTTTGAAACTCAGCATGTTG 60.052 40.000 2.65 2.65 40.53 3.33
227 4154 7.874940 AGAATGTTTGATCATCGTTCTTTTGA 58.125 30.769 20.55 0.00 34.94 2.69
264 4191 6.735694 GCAGCCGTTGAATTGATATATGGTTT 60.736 38.462 0.00 0.00 0.00 3.27
409 4337 3.122278 CCACGTACACGAGGTTTAATGTG 59.878 47.826 9.04 0.00 43.52 3.21
497 4427 1.451387 CACGGGCCGCTAAAGGAAT 60.451 57.895 28.71 0.00 0.00 3.01
498 4428 2.046700 CACGGGCCGCTAAAGGAA 60.047 61.111 28.71 0.00 0.00 3.36
520 4479 1.308998 ATTTATACTGGCAGGCGCAC 58.691 50.000 20.34 0.00 41.24 5.34
943 4904 4.265073 AGAAAAGAAGACAAGTGCTGTGT 58.735 39.130 0.00 0.00 38.84 3.72
971 4932 0.036732 TTCCTCTTGGCAGCACGAAT 59.963 50.000 0.00 0.00 0.00 3.34
974 4935 3.571119 CTTCCTCTTGGCAGCACG 58.429 61.111 0.00 0.00 0.00 5.34
1068 5031 4.373116 GACTTGGCGGCGACCTGA 62.373 66.667 11.74 3.76 0.00 3.86
1087 5050 1.849219 CTCGTAGCATTCGCAGAACTC 59.151 52.381 0.00 0.00 45.90 3.01
1098 5061 1.033574 GGTAGCAGTCCTCGTAGCAT 58.966 55.000 0.00 0.00 0.00 3.79
1164 5127 1.832167 GGGGCTGCACTTGTTGGAA 60.832 57.895 0.21 0.00 0.00 3.53
1279 5245 3.633065 GGAGCTAGTTCCATCGTCTTACT 59.367 47.826 19.90 0.00 37.20 2.24
1295 5268 9.857656 AATTAATGAAATGAGAGAATGGAGCTA 57.142 29.630 0.00 0.00 0.00 3.32
1297 5270 9.245962 CAAATTAATGAAATGAGAGAATGGAGC 57.754 33.333 0.00 0.00 0.00 4.70
1308 5286 9.545105 AACAAGCTGAACAAATTAATGAAATGA 57.455 25.926 0.00 0.00 0.00 2.57
1444 5425 2.572556 TGGTCGACCAGCCCTTTTATTA 59.427 45.455 33.23 5.69 42.01 0.98
1445 5426 1.353022 TGGTCGACCAGCCCTTTTATT 59.647 47.619 33.23 0.00 42.01 1.40
1446 5427 0.988832 TGGTCGACCAGCCCTTTTAT 59.011 50.000 33.23 0.00 42.01 1.40
1447 5428 2.454369 TGGTCGACCAGCCCTTTTA 58.546 52.632 33.23 7.33 42.01 1.52
1474 5477 6.791887 ATCATGTCCGTTCAACATCATATC 57.208 37.500 0.00 0.00 35.19 1.63
1493 5496 7.566760 TTTATCGATTTGCTGGTACAATCAT 57.433 32.000 1.71 0.00 38.70 2.45
1502 5505 3.438360 GCCACTTTTATCGATTTGCTGG 58.562 45.455 1.71 3.94 0.00 4.85
1610 5633 1.106351 ACAATCAAAGCCGTGCACCA 61.106 50.000 12.15 0.00 0.00 4.17
1612 5635 1.729149 GCTACAATCAAAGCCGTGCAC 60.729 52.381 6.82 6.82 32.40 4.57
1613 5636 0.521291 GCTACAATCAAAGCCGTGCA 59.479 50.000 0.00 0.00 32.40 4.57
1614 5637 0.521291 TGCTACAATCAAAGCCGTGC 59.479 50.000 0.00 0.00 37.97 5.34
1615 5638 2.076100 TCTGCTACAATCAAAGCCGTG 58.924 47.619 0.00 0.00 37.97 4.94
1616 5639 2.472695 TCTGCTACAATCAAAGCCGT 57.527 45.000 0.00 0.00 37.97 5.68
1618 5641 9.455847 CTTATATTTTCTGCTACAATCAAAGCC 57.544 33.333 0.00 0.00 37.97 4.35
1699 6322 5.299782 TCAAAACCAAAGGCTTACACGTATT 59.700 36.000 0.00 0.00 0.00 1.89
1712 6335 6.991938 TCCATAGACCAAATCAAAACCAAAG 58.008 36.000 0.00 0.00 0.00 2.77
1789 6417 1.040646 CGCTCTACTAGGGCATTGGA 58.959 55.000 8.69 0.00 0.00 3.53
1791 6419 2.361119 TGTACGCTCTACTAGGGCATTG 59.639 50.000 8.69 0.00 41.81 2.82
1808 6438 6.709145 TGATTGCTGCATGAAAATTTGTAC 57.291 33.333 1.84 0.00 0.00 2.90
1817 6447 3.258622 TGGATTGTTGATTGCTGCATGAA 59.741 39.130 1.84 0.00 0.00 2.57
1832 6462 5.475220 TGTATTTGGAATTCACGTGGATTGT 59.525 36.000 26.62 3.38 0.00 2.71
1837 6467 4.615121 CGTTTGTATTTGGAATTCACGTGG 59.385 41.667 17.00 0.00 0.00 4.94
1839 6469 5.676532 TCGTTTGTATTTGGAATTCACGT 57.323 34.783 7.93 0.00 0.00 4.49
1840 6470 6.978024 TTTCGTTTGTATTTGGAATTCACG 57.022 33.333 7.93 5.38 0.00 4.35
1853 6496 2.612672 TGCCGTCACAATTTCGTTTGTA 59.387 40.909 1.91 0.00 37.73 2.41
1923 6567 0.829333 TGGTGCATGTTGGCAAGTTT 59.171 45.000 0.00 0.00 46.93 2.66
1924 6568 0.390124 CTGGTGCATGTTGGCAAGTT 59.610 50.000 0.00 0.00 46.93 2.66
1925 6569 0.756442 ACTGGTGCATGTTGGCAAGT 60.756 50.000 0.00 0.00 46.93 3.16
1926 6570 0.319211 CACTGGTGCATGTTGGCAAG 60.319 55.000 0.00 0.00 46.93 4.01
1927 6571 0.754587 TCACTGGTGCATGTTGGCAA 60.755 50.000 0.00 0.00 46.93 4.52
1928 6572 1.152798 TCACTGGTGCATGTTGGCA 60.153 52.632 0.00 0.00 42.53 4.92
1929 6573 1.286880 GTCACTGGTGCATGTTGGC 59.713 57.895 0.00 0.00 0.00 4.52
1930 6574 1.250328 ATGTCACTGGTGCATGTTGG 58.750 50.000 0.00 0.00 0.00 3.77
1931 6575 3.374220 AAATGTCACTGGTGCATGTTG 57.626 42.857 0.00 0.00 31.32 3.33
1932 6576 4.405116 AAAAATGTCACTGGTGCATGTT 57.595 36.364 0.00 8.56 31.02 2.71
1933 6577 5.010922 ACATAAAAATGTCACTGGTGCATGT 59.989 36.000 0.00 4.22 31.32 3.21
1934 6578 5.346551 CACATAAAAATGTCACTGGTGCATG 59.653 40.000 0.00 0.00 31.37 4.06
1942 6586 8.408043 TCATTCTTCCACATAAAAATGTCACT 57.592 30.769 0.00 0.00 31.37 3.41
1943 6587 9.643693 AATCATTCTTCCACATAAAAATGTCAC 57.356 29.630 0.00 0.00 31.37 3.67
1958 6602 5.126707 AGACCTTTCATGCAATCATTCTTCC 59.873 40.000 0.00 0.00 0.00 3.46
1966 6610 7.565323 AAGATAGAAGACCTTTCATGCAATC 57.435 36.000 0.00 0.00 0.00 2.67
1987 6631 5.245531 AGAAACATGAACTCCGCATAAAGA 58.754 37.500 0.00 0.00 0.00 2.52
2021 6665 4.713553 TGTGAGACAAGGAATTTGCTGTA 58.286 39.130 0.00 0.00 40.59 2.74
2023 6667 3.817084 TCTGTGAGACAAGGAATTTGCTG 59.183 43.478 0.00 0.00 40.59 4.41
2035 6679 2.700371 ACACCATCTGTTCTGTGAGACA 59.300 45.455 0.00 0.00 33.08 3.41
2046 6690 8.046708 TGCTCTAACAATTTATACACCATCTGT 58.953 33.333 0.00 0.00 36.82 3.41
2066 6711 3.318275 ACGACTCTGTCAAAGTTGCTCTA 59.682 43.478 0.00 0.00 32.28 2.43
2078 6723 3.066369 TGCGAATATGACGACTCTGTC 57.934 47.619 6.73 0.00 39.37 3.51
2079 6724 3.503827 TTGCGAATATGACGACTCTGT 57.496 42.857 6.73 0.00 0.00 3.41
2082 6727 2.160091 GCGATTGCGAATATGACGACTC 60.160 50.000 6.73 0.44 40.82 3.36
2096 6742 3.181487 ACAATTATGGAGGTTGCGATTGC 60.181 43.478 0.00 0.00 43.20 3.56
2099 6745 3.117888 AGGACAATTATGGAGGTTGCGAT 60.118 43.478 0.00 0.00 0.00 4.58
2121 6767 9.502091 GGCAATGACATATAAGTTCCTTATGTA 57.498 33.333 6.73 0.00 37.27 2.29
2122 6768 8.220559 AGGCAATGACATATAAGTTCCTTATGT 58.779 33.333 6.73 5.99 37.27 2.29
2123 6769 8.627208 AGGCAATGACATATAAGTTCCTTATG 57.373 34.615 6.73 0.00 37.27 1.90
2124 6770 9.726438 GTAGGCAATGACATATAAGTTCCTTAT 57.274 33.333 0.00 2.40 39.58 1.73
2125 6771 8.710239 TGTAGGCAATGACATATAAGTTCCTTA 58.290 33.333 0.00 0.00 0.00 2.69
2126 6772 7.573710 TGTAGGCAATGACATATAAGTTCCTT 58.426 34.615 0.00 0.00 0.00 3.36
2127 6773 7.136822 TGTAGGCAATGACATATAAGTTCCT 57.863 36.000 0.00 0.00 0.00 3.36
2128 6774 7.986085 ATGTAGGCAATGACATATAAGTTCC 57.014 36.000 0.00 0.00 34.52 3.62
2129 6775 9.712305 AGTATGTAGGCAATGACATATAAGTTC 57.288 33.333 0.00 0.00 39.91 3.01
2130 6776 9.712305 GAGTATGTAGGCAATGACATATAAGTT 57.288 33.333 0.00 0.00 39.91 2.66
2131 6777 8.870116 TGAGTATGTAGGCAATGACATATAAGT 58.130 33.333 0.00 0.00 39.91 2.24
2132 6778 9.881649 ATGAGTATGTAGGCAATGACATATAAG 57.118 33.333 0.00 0.00 39.91 1.73
2134 6780 9.875691 GAATGAGTATGTAGGCAATGACATATA 57.124 33.333 0.00 0.00 39.91 0.86
2135 6781 8.600668 AGAATGAGTATGTAGGCAATGACATAT 58.399 33.333 0.00 0.00 39.91 1.78
2136 6782 7.966812 AGAATGAGTATGTAGGCAATGACATA 58.033 34.615 0.00 0.00 37.47 2.29
2137 6783 6.835174 AGAATGAGTATGTAGGCAATGACAT 58.165 36.000 0.00 0.00 39.57 3.06
2138 6784 6.239217 AGAATGAGTATGTAGGCAATGACA 57.761 37.500 0.00 0.00 0.00 3.58
2139 6785 5.698545 GGAGAATGAGTATGTAGGCAATGAC 59.301 44.000 0.00 0.00 0.00 3.06
2140 6786 5.366477 TGGAGAATGAGTATGTAGGCAATGA 59.634 40.000 0.00 0.00 0.00 2.57
2141 6787 5.614308 TGGAGAATGAGTATGTAGGCAATG 58.386 41.667 0.00 0.00 0.00 2.82
2142 6788 5.894298 TGGAGAATGAGTATGTAGGCAAT 57.106 39.130 0.00 0.00 0.00 3.56
2143 6789 5.692115 TTGGAGAATGAGTATGTAGGCAA 57.308 39.130 0.00 0.00 0.00 4.52
2144 6790 5.894298 ATTGGAGAATGAGTATGTAGGCA 57.106 39.130 0.00 0.00 0.00 4.75
2145 6791 6.995091 AGAAATTGGAGAATGAGTATGTAGGC 59.005 38.462 0.00 0.00 0.00 3.93
2146 6792 8.970859 AAGAAATTGGAGAATGAGTATGTAGG 57.029 34.615 0.00 0.00 0.00 3.18
2148 6794 9.547753 GCTAAGAAATTGGAGAATGAGTATGTA 57.452 33.333 0.00 0.00 0.00 2.29
2149 6795 8.270744 AGCTAAGAAATTGGAGAATGAGTATGT 58.729 33.333 0.00 0.00 0.00 2.29
2150 6796 8.674263 AGCTAAGAAATTGGAGAATGAGTATG 57.326 34.615 0.00 0.00 0.00 2.39
2151 6797 9.336171 GAAGCTAAGAAATTGGAGAATGAGTAT 57.664 33.333 0.00 0.00 0.00 2.12
2152 6798 8.543774 AGAAGCTAAGAAATTGGAGAATGAGTA 58.456 33.333 0.00 0.00 0.00 2.59
2153 6799 7.401246 AGAAGCTAAGAAATTGGAGAATGAGT 58.599 34.615 0.00 0.00 0.00 3.41
2154 6800 7.862512 AGAAGCTAAGAAATTGGAGAATGAG 57.137 36.000 0.00 0.00 0.00 2.90
2155 6801 8.543774 AGTAGAAGCTAAGAAATTGGAGAATGA 58.456 33.333 0.00 0.00 0.00 2.57
2156 6802 8.610896 CAGTAGAAGCTAAGAAATTGGAGAATG 58.389 37.037 0.00 0.00 0.00 2.67
2157 6803 8.325046 ACAGTAGAAGCTAAGAAATTGGAGAAT 58.675 33.333 0.00 0.00 0.00 2.40
2158 6804 7.680730 ACAGTAGAAGCTAAGAAATTGGAGAA 58.319 34.615 0.00 0.00 0.00 2.87
2159 6805 7.039011 TGACAGTAGAAGCTAAGAAATTGGAGA 60.039 37.037 0.00 0.00 0.00 3.71
2160 6806 7.099764 TGACAGTAGAAGCTAAGAAATTGGAG 58.900 38.462 0.00 0.00 0.00 3.86
2161 6807 7.004555 TGACAGTAGAAGCTAAGAAATTGGA 57.995 36.000 0.00 0.00 0.00 3.53
2162 6808 6.183360 GCTGACAGTAGAAGCTAAGAAATTGG 60.183 42.308 3.99 0.00 34.05 3.16
2163 6809 6.369890 TGCTGACAGTAGAAGCTAAGAAATTG 59.630 38.462 3.99 0.00 37.82 2.32
2164 6810 6.467677 TGCTGACAGTAGAAGCTAAGAAATT 58.532 36.000 3.99 0.00 37.82 1.82
2165 6811 6.042638 TGCTGACAGTAGAAGCTAAGAAAT 57.957 37.500 3.99 0.00 37.82 2.17
2166 6812 5.468540 TGCTGACAGTAGAAGCTAAGAAA 57.531 39.130 3.99 0.00 37.82 2.52
2167 6813 5.468540 TTGCTGACAGTAGAAGCTAAGAA 57.531 39.130 3.99 0.00 37.82 2.52
2168 6814 5.047021 ACATTGCTGACAGTAGAAGCTAAGA 60.047 40.000 3.99 0.00 37.82 2.10
2169 6815 5.174395 ACATTGCTGACAGTAGAAGCTAAG 58.826 41.667 3.99 0.00 37.82 2.18
2170 6816 5.152623 ACATTGCTGACAGTAGAAGCTAA 57.847 39.130 3.99 0.00 37.82 3.09
2171 6817 4.382040 GGACATTGCTGACAGTAGAAGCTA 60.382 45.833 3.99 0.00 37.82 3.32
2172 6818 3.594134 GACATTGCTGACAGTAGAAGCT 58.406 45.455 3.99 0.00 37.82 3.74
2173 6819 2.675348 GGACATTGCTGACAGTAGAAGC 59.325 50.000 3.99 0.00 37.46 3.86
2174 6820 3.055530 AGGGACATTGCTGACAGTAGAAG 60.056 47.826 3.99 0.00 0.00 2.85
2175 6821 2.906389 AGGGACATTGCTGACAGTAGAA 59.094 45.455 3.99 0.00 0.00 2.10
2176 6822 2.540383 AGGGACATTGCTGACAGTAGA 58.460 47.619 3.99 0.00 0.00 2.59
2177 6823 3.055530 AGAAGGGACATTGCTGACAGTAG 60.056 47.826 3.99 0.00 0.00 2.57
2178 6824 2.906389 AGAAGGGACATTGCTGACAGTA 59.094 45.455 3.99 0.00 0.00 2.74
2179 6825 1.701847 AGAAGGGACATTGCTGACAGT 59.298 47.619 3.99 0.00 0.00 3.55
2180 6826 2.082231 CAGAAGGGACATTGCTGACAG 58.918 52.381 0.00 0.00 0.00 3.51
2181 6827 1.699083 TCAGAAGGGACATTGCTGACA 59.301 47.619 0.00 0.00 31.24 3.58
2182 6828 2.354259 CTCAGAAGGGACATTGCTGAC 58.646 52.381 0.00 0.00 32.67 3.51
2183 6829 1.339438 GCTCAGAAGGGACATTGCTGA 60.339 52.381 0.00 0.00 34.71 4.26
2184 6830 1.093159 GCTCAGAAGGGACATTGCTG 58.907 55.000 0.00 0.00 0.00 4.41
2185 6831 0.990374 AGCTCAGAAGGGACATTGCT 59.010 50.000 0.00 0.00 0.00 3.91
2186 6832 1.471684 CAAGCTCAGAAGGGACATTGC 59.528 52.381 0.00 0.00 0.00 3.56
2187 6833 2.787994 ACAAGCTCAGAAGGGACATTG 58.212 47.619 0.00 0.00 0.00 2.82
2188 6834 3.152341 CAACAAGCTCAGAAGGGACATT 58.848 45.455 0.00 0.00 0.00 2.71
2189 6835 2.787994 CAACAAGCTCAGAAGGGACAT 58.212 47.619 0.00 0.00 0.00 3.06
2190 6836 1.815408 GCAACAAGCTCAGAAGGGACA 60.815 52.381 0.00 0.00 41.15 4.02
2191 6837 0.877743 GCAACAAGCTCAGAAGGGAC 59.122 55.000 0.00 0.00 41.15 4.46
2192 6838 0.473755 TGCAACAAGCTCAGAAGGGA 59.526 50.000 0.00 0.00 45.94 4.20
2193 6839 0.595095 GTGCAACAAGCTCAGAAGGG 59.405 55.000 0.00 0.00 45.94 3.95
2194 6840 0.595095 GGTGCAACAAGCTCAGAAGG 59.405 55.000 0.00 0.00 45.94 3.46
2195 6841 1.266175 CAGGTGCAACAAGCTCAGAAG 59.734 52.381 3.64 0.00 45.94 2.85
2196 6842 1.311859 CAGGTGCAACAAGCTCAGAA 58.688 50.000 3.64 0.00 45.94 3.02
2197 6843 0.181114 ACAGGTGCAACAAGCTCAGA 59.819 50.000 3.64 0.00 45.94 3.27
2198 6844 1.882912 TACAGGTGCAACAAGCTCAG 58.117 50.000 3.64 0.00 45.94 3.35
2199 6845 2.153645 CATACAGGTGCAACAAGCTCA 58.846 47.619 3.64 0.00 45.94 4.26
2200 6846 2.095567 CACATACAGGTGCAACAAGCTC 60.096 50.000 3.64 0.00 45.94 4.09
2201 6847 1.881973 CACATACAGGTGCAACAAGCT 59.118 47.619 3.64 0.00 45.94 3.74
2202 6848 1.068333 CCACATACAGGTGCAACAAGC 60.068 52.381 3.64 0.00 45.96 4.01
2203 6849 1.068333 GCCACATACAGGTGCAACAAG 60.068 52.381 3.64 0.00 39.98 3.16
2204 6850 0.958091 GCCACATACAGGTGCAACAA 59.042 50.000 3.64 0.00 39.98 2.83
2205 6851 0.893270 GGCCACATACAGGTGCAACA 60.893 55.000 3.64 0.00 39.98 3.33
2206 6852 0.609131 AGGCCACATACAGGTGCAAC 60.609 55.000 5.01 0.00 37.46 4.17
2207 6853 0.322456 GAGGCCACATACAGGTGCAA 60.322 55.000 5.01 0.00 37.46 4.08
2208 6854 1.200760 AGAGGCCACATACAGGTGCA 61.201 55.000 5.01 0.00 37.46 4.57
2209 6855 0.830648 TAGAGGCCACATACAGGTGC 59.169 55.000 5.01 0.00 37.46 5.01
2210 6856 2.700371 TGATAGAGGCCACATACAGGTG 59.300 50.000 5.01 0.00 38.52 4.00
2211 6857 3.046283 TGATAGAGGCCACATACAGGT 57.954 47.619 5.01 0.00 0.00 4.00
2212 6858 5.745312 TTATGATAGAGGCCACATACAGG 57.255 43.478 5.01 0.00 0.00 4.00
2213 6859 7.978414 CAGTATTATGATAGAGGCCACATACAG 59.022 40.741 5.01 0.00 0.00 2.74
2214 6860 7.673926 TCAGTATTATGATAGAGGCCACATACA 59.326 37.037 5.01 0.00 0.00 2.29
2215 6861 7.976734 GTCAGTATTATGATAGAGGCCACATAC 59.023 40.741 5.01 0.87 0.00 2.39
2216 6862 7.673926 TGTCAGTATTATGATAGAGGCCACATA 59.326 37.037 5.01 4.12 0.00 2.29
2217 6863 6.498303 TGTCAGTATTATGATAGAGGCCACAT 59.502 38.462 5.01 5.12 0.00 3.21
2218 6864 5.838521 TGTCAGTATTATGATAGAGGCCACA 59.161 40.000 5.01 0.00 0.00 4.17
2219 6865 6.209589 TCTGTCAGTATTATGATAGAGGCCAC 59.790 42.308 5.01 0.00 41.01 5.01
2220 6866 6.314917 TCTGTCAGTATTATGATAGAGGCCA 58.685 40.000 5.01 0.00 41.01 5.36
2221 6867 6.842437 TCTGTCAGTATTATGATAGAGGCC 57.158 41.667 0.00 0.00 41.01 5.19
2225 6871 7.388224 GGTCGTCTCTGTCAGTATTATGATAGA 59.612 40.741 0.00 3.63 42.87 1.98
2226 6872 7.389330 AGGTCGTCTCTGTCAGTATTATGATAG 59.611 40.741 0.00 0.00 39.16 2.08
2227 6873 7.225011 AGGTCGTCTCTGTCAGTATTATGATA 58.775 38.462 0.00 0.00 0.00 2.15
2228 6874 6.065374 AGGTCGTCTCTGTCAGTATTATGAT 58.935 40.000 0.00 0.00 0.00 2.45
2229 6875 5.437946 AGGTCGTCTCTGTCAGTATTATGA 58.562 41.667 0.00 0.00 0.00 2.15
2230 6876 5.759506 AGGTCGTCTCTGTCAGTATTATG 57.240 43.478 0.00 0.00 0.00 1.90
2231 6877 5.470777 GCTAGGTCGTCTCTGTCAGTATTAT 59.529 44.000 0.00 0.00 0.00 1.28
2232 6878 4.815308 GCTAGGTCGTCTCTGTCAGTATTA 59.185 45.833 0.00 0.00 0.00 0.98
2233 6879 3.628487 GCTAGGTCGTCTCTGTCAGTATT 59.372 47.826 0.00 0.00 0.00 1.89
2234 6880 3.207778 GCTAGGTCGTCTCTGTCAGTAT 58.792 50.000 0.00 0.00 0.00 2.12
2235 6881 2.630158 GCTAGGTCGTCTCTGTCAGTA 58.370 52.381 0.00 0.00 0.00 2.74
2236 6882 1.455248 GCTAGGTCGTCTCTGTCAGT 58.545 55.000 0.00 0.00 0.00 3.41
2237 6883 0.375454 CGCTAGGTCGTCTCTGTCAG 59.625 60.000 0.00 0.00 0.00 3.51
2238 6884 1.025113 CCGCTAGGTCGTCTCTGTCA 61.025 60.000 0.00 0.00 0.00 3.58
2239 6885 1.716826 CCCGCTAGGTCGTCTCTGTC 61.717 65.000 0.00 0.00 35.12 3.51
2240 6886 1.749638 CCCGCTAGGTCGTCTCTGT 60.750 63.158 0.00 0.00 35.12 3.41
2241 6887 3.111939 CCCGCTAGGTCGTCTCTG 58.888 66.667 0.00 0.00 35.12 3.35
2250 6896 1.745320 ATTAGGCACGACCCGCTAGG 61.745 60.000 0.00 0.00 40.58 3.02
2251 6897 0.104304 AATTAGGCACGACCCGCTAG 59.896 55.000 0.00 0.00 40.58 3.42
2252 6898 0.538118 AAATTAGGCACGACCCGCTA 59.462 50.000 0.00 0.00 40.58 4.26
2253 6899 0.743345 GAAATTAGGCACGACCCGCT 60.743 55.000 0.00 0.00 40.58 5.52
2254 6900 1.712018 GGAAATTAGGCACGACCCGC 61.712 60.000 0.00 0.00 40.58 6.13
2255 6901 0.107848 AGGAAATTAGGCACGACCCG 60.108 55.000 0.00 0.00 40.58 5.28
2256 6902 1.379527 CAGGAAATTAGGCACGACCC 58.620 55.000 0.00 0.00 40.58 4.46
2257 6903 1.065709 TCCAGGAAATTAGGCACGACC 60.066 52.381 0.00 0.00 39.61 4.79
2258 6904 2.280628 CTCCAGGAAATTAGGCACGAC 58.719 52.381 0.00 0.00 0.00 4.34
2259 6905 1.906574 ACTCCAGGAAATTAGGCACGA 59.093 47.619 0.00 0.00 0.00 4.35
2260 6906 2.009774 CACTCCAGGAAATTAGGCACG 58.990 52.381 0.00 0.00 0.00 5.34
2261 6907 1.745653 GCACTCCAGGAAATTAGGCAC 59.254 52.381 0.00 0.00 0.00 5.01
2262 6908 1.354031 TGCACTCCAGGAAATTAGGCA 59.646 47.619 0.00 0.00 0.00 4.75
2263 6909 1.745653 GTGCACTCCAGGAAATTAGGC 59.254 52.381 10.32 0.00 0.00 3.93
2264 6910 2.025887 AGGTGCACTCCAGGAAATTAGG 60.026 50.000 17.98 0.00 0.00 2.69
2265 6911 3.356529 AGGTGCACTCCAGGAAATTAG 57.643 47.619 17.98 0.00 0.00 1.73
2266 6912 3.585289 TGTAGGTGCACTCCAGGAAATTA 59.415 43.478 17.98 0.00 0.00 1.40
2267 6913 2.375174 TGTAGGTGCACTCCAGGAAATT 59.625 45.455 17.98 0.00 0.00 1.82
2268 6914 1.985159 TGTAGGTGCACTCCAGGAAAT 59.015 47.619 17.98 0.00 0.00 2.17
2269 6915 1.429930 TGTAGGTGCACTCCAGGAAA 58.570 50.000 17.98 0.00 0.00 3.13
2270 6916 1.555075 GATGTAGGTGCACTCCAGGAA 59.445 52.381 17.98 0.00 0.00 3.36
2271 6917 1.195115 GATGTAGGTGCACTCCAGGA 58.805 55.000 17.98 0.00 0.00 3.86
2272 6918 0.179000 GGATGTAGGTGCACTCCAGG 59.821 60.000 17.98 0.00 0.00 4.45
2273 6919 1.198713 AGGATGTAGGTGCACTCCAG 58.801 55.000 20.56 0.00 0.00 3.86
2274 6920 1.555075 GAAGGATGTAGGTGCACTCCA 59.445 52.381 20.56 13.60 0.00 3.86
2275 6921 1.555075 TGAAGGATGTAGGTGCACTCC 59.445 52.381 17.98 15.11 0.00 3.85
2276 6922 2.028112 TGTGAAGGATGTAGGTGCACTC 60.028 50.000 17.98 5.59 0.00 3.51
2277 6923 1.977854 TGTGAAGGATGTAGGTGCACT 59.022 47.619 17.98 5.41 0.00 4.40
2278 6924 2.472695 TGTGAAGGATGTAGGTGCAC 57.527 50.000 8.80 8.80 0.00 4.57
2279 6925 2.778299 GTTGTGAAGGATGTAGGTGCA 58.222 47.619 0.00 0.00 0.00 4.57
2280 6926 1.732259 CGTTGTGAAGGATGTAGGTGC 59.268 52.381 0.00 0.00 0.00 5.01
2281 6927 1.732259 GCGTTGTGAAGGATGTAGGTG 59.268 52.381 0.00 0.00 0.00 4.00
2282 6928 1.338769 GGCGTTGTGAAGGATGTAGGT 60.339 52.381 0.00 0.00 0.00 3.08
2283 6929 1.338674 TGGCGTTGTGAAGGATGTAGG 60.339 52.381 0.00 0.00 0.00 3.18
2284 6930 1.732259 GTGGCGTTGTGAAGGATGTAG 59.268 52.381 0.00 0.00 0.00 2.74
2285 6931 1.070914 TGTGGCGTTGTGAAGGATGTA 59.929 47.619 0.00 0.00 0.00 2.29
2286 6932 0.179032 TGTGGCGTTGTGAAGGATGT 60.179 50.000 0.00 0.00 0.00 3.06
2287 6933 1.135603 CATGTGGCGTTGTGAAGGATG 60.136 52.381 0.00 0.00 0.00 3.51
2288 6934 1.167851 CATGTGGCGTTGTGAAGGAT 58.832 50.000 0.00 0.00 0.00 3.24
2289 6935 0.107643 TCATGTGGCGTTGTGAAGGA 59.892 50.000 0.00 0.00 0.00 3.36
2290 6936 0.518636 CTCATGTGGCGTTGTGAAGG 59.481 55.000 0.00 0.00 0.00 3.46
2291 6937 1.069703 CACTCATGTGGCGTTGTGAAG 60.070 52.381 0.00 0.00 40.33 3.02
2292 6938 0.943673 CACTCATGTGGCGTTGTGAA 59.056 50.000 0.00 0.00 40.33 3.18
2293 6939 2.615774 CACTCATGTGGCGTTGTGA 58.384 52.632 0.00 0.00 40.33 3.58
2324 6970 0.386858 CGAGGGTACACAGTGACGTG 60.387 60.000 7.81 6.13 42.81 4.49
2325 6971 0.535780 TCGAGGGTACACAGTGACGT 60.536 55.000 7.81 0.00 0.00 4.34
2326 6972 0.109873 GTCGAGGGTACACAGTGACG 60.110 60.000 7.81 3.55 0.00 4.35
2327 6973 0.109873 CGTCGAGGGTACACAGTGAC 60.110 60.000 7.81 0.92 0.00 3.67
2328 6974 1.859427 GCGTCGAGGGTACACAGTGA 61.859 60.000 7.81 0.00 0.00 3.41
2329 6975 1.443872 GCGTCGAGGGTACACAGTG 60.444 63.158 7.31 0.00 0.00 3.66
2330 6976 2.633509 GGCGTCGAGGGTACACAGT 61.634 63.158 7.31 0.00 0.00 3.55
2331 6977 2.181021 GGCGTCGAGGGTACACAG 59.819 66.667 7.31 0.00 0.00 3.66
2332 6978 3.740397 CGGCGTCGAGGGTACACA 61.740 66.667 1.44 0.00 39.00 3.72
2333 6979 4.487412 CCGGCGTCGAGGGTACAC 62.487 72.222 12.93 0.00 39.00 2.90
2348 6994 4.720902 TGCAGTGCATCACCCCCG 62.721 66.667 15.37 0.00 34.49 5.73
2349 6995 3.064324 GTGCAGTGCATCACCCCC 61.064 66.667 22.87 2.04 41.91 5.40
2350 6996 3.064324 GGTGCAGTGCATCACCCC 61.064 66.667 23.55 14.42 45.26 4.95
2353 6999 0.886043 TGTGAGGTGCAGTGCATCAC 60.886 55.000 31.46 31.46 42.90 3.06
2354 7000 0.037160 ATGTGAGGTGCAGTGCATCA 59.963 50.000 29.29 22.26 42.90 3.07
2355 7001 1.135489 CAATGTGAGGTGCAGTGCATC 60.135 52.381 22.87 21.96 41.91 3.91
2356 7002 0.885879 CAATGTGAGGTGCAGTGCAT 59.114 50.000 22.87 5.89 41.91 3.96
2357 7003 0.179023 TCAATGTGAGGTGCAGTGCA 60.179 50.000 15.37 15.37 35.60 4.57
2358 7004 0.953727 TTCAATGTGAGGTGCAGTGC 59.046 50.000 8.58 8.58 32.72 4.40
2359 7005 2.224606 ACTTCAATGTGAGGTGCAGTG 58.775 47.619 0.00 0.00 35.26 3.66
2360 7006 2.620115 CAACTTCAATGTGAGGTGCAGT 59.380 45.455 0.00 0.00 36.77 4.40
2361 7007 2.880268 TCAACTTCAATGTGAGGTGCAG 59.120 45.455 0.00 0.00 36.77 4.41
2362 7008 2.618241 GTCAACTTCAATGTGAGGTGCA 59.382 45.455 0.00 0.00 36.77 4.57
2363 7009 2.030805 GGTCAACTTCAATGTGAGGTGC 60.031 50.000 0.00 0.00 36.77 5.01
2364 7010 2.554032 GGGTCAACTTCAATGTGAGGTG 59.446 50.000 0.00 0.00 36.77 4.00
2365 7011 2.810400 CGGGTCAACTTCAATGTGAGGT 60.810 50.000 0.00 0.00 38.40 3.85
2366 7012 1.806542 CGGGTCAACTTCAATGTGAGG 59.193 52.381 0.00 0.00 0.00 3.86
2367 7013 1.806542 CCGGGTCAACTTCAATGTGAG 59.193 52.381 0.00 0.00 0.00 3.51
2368 7014 1.890876 CCGGGTCAACTTCAATGTGA 58.109 50.000 0.00 0.00 0.00 3.58
2369 7015 0.240945 GCCGGGTCAACTTCAATGTG 59.759 55.000 2.18 0.00 0.00 3.21
2370 7016 0.893727 GGCCGGGTCAACTTCAATGT 60.894 55.000 2.18 0.00 0.00 2.71
2371 7017 1.883021 GGCCGGGTCAACTTCAATG 59.117 57.895 2.18 0.00 0.00 2.82
2372 7018 1.674322 CGGCCGGGTCAACTTCAAT 60.674 57.895 20.10 0.00 0.00 2.57
2373 7019 2.281208 CGGCCGGGTCAACTTCAA 60.281 61.111 20.10 0.00 0.00 2.69
2374 7020 4.323477 CCGGCCGGGTCAACTTCA 62.323 66.667 37.42 0.00 0.00 3.02
2375 7021 3.540367 TTCCGGCCGGGTCAACTTC 62.540 63.158 42.36 0.00 37.00 3.01
2376 7022 3.122727 TTTCCGGCCGGGTCAACTT 62.123 57.895 42.36 0.00 37.00 2.66
2377 7023 3.562232 TTTCCGGCCGGGTCAACT 61.562 61.111 42.36 0.00 37.00 3.16
2378 7024 3.359523 GTTTCCGGCCGGGTCAAC 61.360 66.667 42.36 33.83 37.00 3.18
2379 7025 4.992511 CGTTTCCGGCCGGGTCAA 62.993 66.667 42.36 28.72 37.00 3.18
2383 7029 3.374012 TATCACGTTTCCGGCCGGG 62.374 63.158 42.36 28.70 38.78 5.73
2384 7030 2.169146 GTATCACGTTTCCGGCCGG 61.169 63.158 39.13 39.13 38.78 6.13
2385 7031 2.510594 CGTATCACGTTTCCGGCCG 61.511 63.158 21.04 21.04 36.74 6.13
2386 7032 2.805807 GCGTATCACGTTTCCGGCC 61.806 63.158 0.00 0.00 44.73 6.13
2387 7033 2.020836 CTGCGTATCACGTTTCCGGC 62.021 60.000 0.00 0.00 44.73 6.13
2388 7034 1.418342 CCTGCGTATCACGTTTCCGG 61.418 60.000 0.00 0.00 44.73 5.14
2389 7035 1.995991 CCTGCGTATCACGTTTCCG 59.004 57.895 0.26 0.00 44.73 4.30
2390 7036 1.017177 TGCCTGCGTATCACGTTTCC 61.017 55.000 0.26 0.00 44.73 3.13
2391 7037 0.793861 TTGCCTGCGTATCACGTTTC 59.206 50.000 0.26 0.00 44.73 2.78
2392 7038 1.396996 GATTGCCTGCGTATCACGTTT 59.603 47.619 0.26 0.00 44.73 3.60
2393 7039 1.006832 GATTGCCTGCGTATCACGTT 58.993 50.000 0.26 0.00 44.73 3.99
2394 7040 0.810031 GGATTGCCTGCGTATCACGT 60.810 55.000 0.26 0.00 44.73 4.49
2395 7041 1.821241 CGGATTGCCTGCGTATCACG 61.821 60.000 0.00 0.00 45.88 4.35
2396 7042 1.498865 CCGGATTGCCTGCGTATCAC 61.499 60.000 0.00 0.00 36.91 3.06
2397 7043 1.227527 CCGGATTGCCTGCGTATCA 60.228 57.895 0.00 0.00 36.91 2.15
2398 7044 2.607892 GCCGGATTGCCTGCGTATC 61.608 63.158 5.05 0.00 36.91 2.24
2399 7045 2.591715 GCCGGATTGCCTGCGTAT 60.592 61.111 5.05 0.00 36.91 3.06
2408 7054 2.635443 AAAAGCACCCGCCGGATTG 61.635 57.895 5.05 1.86 39.83 2.67
2409 7055 2.282887 AAAAGCACCCGCCGGATT 60.283 55.556 5.05 0.00 39.83 3.01
2410 7056 3.061848 CAAAAGCACCCGCCGGAT 61.062 61.111 5.05 0.00 39.83 4.18
2411 7057 4.257654 TCAAAAGCACCCGCCGGA 62.258 61.111 5.05 0.00 39.83 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.