AutoCloner

Multiple sequence alignment - TraesCS6A01G073900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G073900	chr6A	100.000	2633	0	0	1	2633	41997199	41999831	0.000000e+00	4863.0
1	TraesCS6A01G073900	chr6A	93.093	666	34	9	1977	2633	596517884	596518546	0.000000e+00	965.0
2	TraesCS6A01G073900	chr6A	82.836	670	68	18	1029	1691	42007740	42008369	8.230000e-155	556.0
3	TraesCS6A01G073900	chr6A	79.439	214	34	6	1079	1282	27745707	27745920	2.730000e-30	143.0
4	TraesCS6A01G073900	chr6A	94.872	39	2	0	1108	1146	31049228	31049190	7.870000e-06	62.1
5	TraesCS6A01G073900	chrUn	92.821	1574	84	15	420	1986	105403885	105402334	0.000000e+00	2254.0
6	TraesCS6A01G073900	chrUn	83.770	764	77	19	953	1691	105398823	105398082	0.000000e+00	680.0
7	TraesCS6A01G073900	chrUn	90.389	437	27	5	1	437	105404325	105403904	6.360000e-156	560.0
8	TraesCS6A01G073900	chrUn	79.907	214	33	6	1079	1282	112241729	112241942	5.870000e-32	148.0
9	TraesCS6A01G073900	chr6B	87.909	1100	80	14	689	1746	76343828	76344916	0.000000e+00	1245.0
10	TraesCS6A01G073900	chr6B	90.252	595	39	8	1408	1986	76297718	76298309	0.000000e+00	760.0
11	TraesCS6A01G073900	chr6B	90.084	595	40	7	1408	1986	79708105	79707514	0.000000e+00	754.0
12	TraesCS6A01G073900	chr6B	83.905	758	75	23	952	1692	76387479	76388206	0.000000e+00	680.0
13	TraesCS6A01G073900	chr6B	89.310	290	19	6	1130	1414	76292283	76292565	1.160000e-93	353.0
14	TraesCS6A01G073900	chr6B	91.463	246	17	3	1744	1986	76350129	76350373	4.200000e-88	335.0
15	TraesCS6A01G073900	chr6B	85.342	307	26	2	689	976	76290383	76290689	1.530000e-77	300.0
16	TraesCS6A01G073900	chr6B	85.784	204	15	10	440	640	76290190	76290382	1.240000e-48	204.0
17	TraesCS6A01G073900	chr6B	85.572	201	15	10	440	640	76343641	76343827	5.750000e-47	198.0
18	TraesCS6A01G073900	chr6B	75.983	229	40	10	1069	1286	48479440	48479664	1.290000e-18	104.0
19	TraesCS6A01G073900	chr5A	94.817	656	31	3	1980	2633	657285014	657284360	0.000000e+00	1020.0
20	TraesCS6A01G073900	chr5A	94.436	647	34	2	1988	2632	4212016	4212662	0.000000e+00	994.0
21	TraesCS6A01G073900	chr1A	94.590	647	33	2	1988	2633	483936577	483937222	0.000000e+00	1000.0
22	TraesCS6A01G073900	chr1A	93.981	648	33	5	1988	2633	535390882	535391525	0.000000e+00	976.0
23	TraesCS6A01G073900	chr1A	93.548	651	34	7	1988	2633	545782248	545781601	0.000000e+00	963.0
24	TraesCS6A01G073900	chr7A	94.299	649	34	2	1988	2633	126141673	126141025	0.000000e+00	990.0
25	TraesCS6A01G073900	chr2A	92.813	654	33	12	1988	2633	709838720	709839367	0.000000e+00	935.0
26	TraesCS6A01G073900	chr4A	92.672	655	34	11	1988	2633	532213611	532214260	0.000000e+00	931.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G073900	chr6A	41997199	41999831	2632	False	4863.000000	4863	100.000000	1	2633	1	chr6A.!!$F2	2632
1	TraesCS6A01G073900	chr6A	596517884	596518546	662	False	965.000000	965	93.093000	1977	2633	1	chr6A.!!$F4	656
2	TraesCS6A01G073900	chr6A	42007740	42008369	629	False	556.000000	556	82.836000	1029	1691	1	chr6A.!!$F3	662
3	TraesCS6A01G073900	chrUn	105398082	105404325	6243	True	1164.666667	2254	88.993333	1	1986	3	chrUn.!!$R1	1985
4	TraesCS6A01G073900	chr6B	76297718	76298309	591	False	760.000000	760	90.252000	1408	1986	1	chr6B.!!$F2	578
5	TraesCS6A01G073900	chr6B	79707514	79708105	591	True	754.000000	754	90.084000	1408	1986	1	chr6B.!!$R1	578
6	TraesCS6A01G073900	chr6B	76343641	76344916	1275	False	721.500000	1245	86.740500	440	1746	2	chr6B.!!$F6	1306
7	TraesCS6A01G073900	chr6B	76387479	76388206	727	False	680.000000	680	83.905000	952	1692	1	chr6B.!!$F4	740
8	TraesCS6A01G073900	chr6B	76290190	76292565	2375	False	285.666667	353	86.812000	440	1414	3	chr6B.!!$F5	974
9	TraesCS6A01G073900	chr5A	657284360	657285014	654	True	1020.000000	1020	94.817000	1980	2633	1	chr5A.!!$R1	653
10	TraesCS6A01G073900	chr5A	4212016	4212662	646	False	994.000000	994	94.436000	1988	2632	1	chr5A.!!$F1	644
11	TraesCS6A01G073900	chr1A	483936577	483937222	645	False	1000.000000	1000	94.590000	1988	2633	1	chr1A.!!$F1	645
12	TraesCS6A01G073900	chr1A	535390882	535391525	643	False	976.000000	976	93.981000	1988	2633	1	chr1A.!!$F2	645
13	TraesCS6A01G073900	chr1A	545781601	545782248	647	True	963.000000	963	93.548000	1988	2633	1	chr1A.!!$R1	645
14	TraesCS6A01G073900	chr7A	126141025	126141673	648	True	990.000000	990	94.299000	1988	2633	1	chr7A.!!$R1	645
15	TraesCS6A01G073900	chr2A	709838720	709839367	647	False	935.000000	935	92.813000	1988	2633	1	chr2A.!!$F1	645
16	TraesCS6A01G073900	chr4A	532213611	532214260	649	False	931.000000	931	92.672000	1988	2633	1	chr4A.!!$F1	645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
57	58	0.036010	CAAAGAGAGCCACGGACCAT	60.036	55.0	3.55	F
534	578	0.179067	TTGGAGGCGAACACGAACTT	60.179	50.0	2.66	F
925	995	0.179100	CTCAGCCGTCCGTGATTCAT	60.179	55.0	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1024	1200	0.947244	GAAGACAAGTGCTGTGGTGG	59.053	55.000	38.84	4.61	R
1544	3075	0.984230	TCGACCAGCTTTTCCCATCT	59.016	50.000	0.00	2.90	R
2449	4860	3.433709	TGAAATCCACATATTTTGCGCG	58.566	40.909	0.00	6.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	2.356125	CCATCGAAGGGAATCCAACTGT	60.356	50.000	0.09	0.00	34.83	3.55
26	27	2.622436	GAAGGGAATCCAACTGTCTCG	58.378	52.381	0.09	0.00	34.83	4.04
30	31	2.742589	GGGAATCCAACTGTCTCGAAAC	59.257	50.000	0.09	0.00	0.00	2.78
40	41	3.049912	CTGTCTCGAAACATCACGACAA	58.950	45.455	0.00	0.00	34.82	3.18
57	58	0.036010	CAAAGAGAGCCACGGACCAT	60.036	55.000	0.00	0.00	0.00	3.55
83	84	1.478510	AGAGCAATGTTCGACCGAGAT	59.521	47.619	0.00	0.00	0.00	2.75
101	102	4.261952	CGAGATAGTCGTACACCTCCTCTA	60.262	50.000	0.00	0.00	44.20	2.43
103	104	4.900652	AGATAGTCGTACACCTCCTCTAGA	59.099	45.833	0.00	0.00	0.00	2.43
129	130	1.078072	ACGGCCGCCATCACAAATA	60.078	52.632	28.58	0.00	0.00	1.40
142	143	6.238593	GCCATCACAAATAGAGAGAAACATCC	60.239	42.308	0.00	0.00	0.00	3.51
145	146	6.173339	TCACAAATAGAGAGAAACATCCCAC	58.827	40.000	0.00	0.00	0.00	4.61
146	147	6.013379	TCACAAATAGAGAGAAACATCCCACT	60.013	38.462	0.00	0.00	0.00	4.00
147	148	6.093219	CACAAATAGAGAGAAACATCCCACTG	59.907	42.308	0.00	0.00	0.00	3.66
148	149	6.176183	CAAATAGAGAGAAACATCCCACTGT	58.824	40.000	0.00	0.00	0.00	3.55
149	150	3.692257	AGAGAGAAACATCCCACTGTG	57.308	47.619	0.00	0.00	0.00	3.66
150	151	2.975489	AGAGAGAAACATCCCACTGTGT	59.025	45.455	7.08	0.00	0.00	3.72
164	165	0.882042	CTGTGTCTGTGTGAGGCCAC	60.882	60.000	5.01	0.00	43.46	5.01
170	171	0.466189	CTGTGTGAGGCCACCAAACT	60.466	55.000	16.43	0.00	42.53	2.66
182	183	2.294791	CCACCAAACTTCAAACGCCATA	59.705	45.455	0.00	0.00	0.00	2.74
183	184	3.243569	CCACCAAACTTCAAACGCCATAA	60.244	43.478	0.00	0.00	0.00	1.90
208	209	1.129811	GCACCGAAAACCAATACCTCG	59.870	52.381	0.00	0.00	0.00	4.63
213	214	3.323243	CGAAAACCAATACCTCGTCACT	58.677	45.455	0.00	0.00	0.00	3.41
247	248	4.569653	CCCCAAAATGAGAGGTCAACCATA	60.570	45.833	1.33	0.00	35.88	2.74
249	250	5.480073	CCCAAAATGAGAGGTCAACCATAAA	59.520	40.000	1.33	0.00	35.88	1.40
393	394	2.368875	CCCCTGGCTCGATAATACAGTT	59.631	50.000	0.00	0.00	0.00	3.16
418	419	2.250031	TGCAGCAAACATGGGAAGATT	58.750	42.857	0.00	0.00	0.00	2.40
424	425	5.935789	CAGCAAACATGGGAAGATTGAAAAT	59.064	36.000	0.00	0.00	0.00	1.82
534	578	0.179067	TTGGAGGCGAACACGAACTT	60.179	50.000	0.00	0.00	0.00	2.66
687	731	0.896226	GAGTCGAGTAGGGCCTTGTT	59.104	55.000	13.45	0.00	0.00	2.83
777	840	3.287312	ACGCCAAGAAATGATGTGTTG	57.713	42.857	0.00	0.00	0.00	3.33
786	849	5.263599	AGAAATGATGTGTTGCCATTAGGA	58.736	37.500	0.00	0.00	36.89	2.94
789	852	2.290832	TGATGTGTTGCCATTAGGAGCA	60.291	45.455	0.00	0.00	36.89	4.26
796	859	1.630369	TGCCATTAGGAGCAAGTGACT	59.370	47.619	0.00	0.00	35.69	3.41
822	885	8.465999	TGCAAAAATATCCATAAATCTCGTGTT	58.534	29.630	0.00	0.00	0.00	3.32
855	918	8.964476	AACTACATACCCAATTTGTAGAGATG	57.036	34.615	17.22	3.60	43.47	2.90
880	950	5.592104	TTAGCTGTCGGTAATTCATCTCA	57.408	39.130	0.00	0.00	0.00	3.27
914	984	2.130272	TGTAGAGATCACTCAGCCGT	57.870	50.000	0.00	0.00	44.79	5.68
915	985	2.017782	TGTAGAGATCACTCAGCCGTC	58.982	52.381	0.00	0.00	44.79	4.79
923	993	1.078759	CACTCAGCCGTCCGTGATTC	61.079	60.000	0.00	0.00	0.00	2.52
925	995	0.179100	CTCAGCCGTCCGTGATTCAT	60.179	55.000	0.00	0.00	0.00	2.57
927	997	1.226974	AGCCGTCCGTGATTCATCG	60.227	57.895	0.00	0.00	0.00	3.84
988	1160	6.046643	TGCCAATATAAATAGGAGAACCCCAT	59.953	38.462	0.00	0.00	36.73	4.00
1010	1182	2.847441	CCACACATCATCATCTCCCAG	58.153	52.381	0.00	0.00	0.00	4.45
1024	1200	1.687493	CCCAGTGTCTCCTCCCTCC	60.687	68.421	0.00	0.00	0.00	4.30
1068	2543	4.553330	TCTTCTTCGTTAATCCTTGCCT	57.447	40.909	0.00	0.00	0.00	4.75
1086	2561	1.566211	CTGGAGGAAGCAGGAGAGAA	58.434	55.000	0.00	0.00	0.00	2.87
1104	2579	2.366916	AGAATGGAGGCTAAGATGTCGG	59.633	50.000	0.00	0.00	0.00	4.79
1151	2663	3.073735	CTCCTCCTCGTGCTGCCT	61.074	66.667	0.00	0.00	0.00	4.75
1358	2876	2.685017	TGCGGCCAGTCAGATCCT	60.685	61.111	2.24	0.00	0.00	3.24
1362	2880	1.333636	CGGCCAGTCAGATCCTTCCT	61.334	60.000	2.24	0.00	0.00	3.36
1584	3115	4.324669	CGACCATGATCGTTCATATGTAGC	59.675	45.833	0.00	0.00	40.70	3.58
1595	3126	2.034179	TCATATGTAGCTGAACGGACGG	59.966	50.000	1.90	0.00	0.00	4.79
1596	3127	0.101759	TATGTAGCTGAACGGACGGC	59.898	55.000	0.00	6.78	41.86	5.68
1694	3233	7.830099	ACTTCCAAGATTTGAAGAGTTCATT	57.170	32.000	12.00	0.00	39.84	2.57
1780	3323	4.757354	TTTGCTTCCGCGCGCATG	62.757	61.111	32.61	21.47	39.65	4.06
1784	3327	3.787676	CTTCCGCGCGCATGTCAA	61.788	61.111	32.61	13.85	0.00	3.18
1928	3478	9.337396	TCTTAAGCAACTCATAAAGAACTGAAA	57.663	29.630	0.00	0.00	0.00	2.69
1978	3528	2.488153	CCGTCCCAGACCAAAGAAAATC	59.512	50.000	0.00	0.00	0.00	2.17
1979	3529	3.146066	CGTCCCAGACCAAAGAAAATCA	58.854	45.455	0.00	0.00	0.00	2.57
2066	3617	2.028130	TCAAAACCGGACAACTTGCAT	58.972	42.857	9.46	0.00	0.00	3.96
2228	4117	7.148120	TGGTTACTTTTTCAAATACGTGAACCA	60.148	33.333	0.00	0.00	37.24	3.67
2229	4118	7.166307	GGTTACTTTTTCAAATACGTGAACCAC	59.834	37.037	0.00	0.00	37.24	4.16
2230	4120	6.197364	ACTTTTTCAAATACGTGAACCACA	57.803	33.333	0.00	0.00	37.24	4.17
2449	4860	2.822764	ACGCGGATATGGACTTCTTTC	58.177	47.619	12.47	0.00	0.00	2.62
2476	4888	7.426169	GCGCAAAATATGTGGATTTCAAAAATC	59.574	33.333	0.30	4.23	40.01	2.17
2611	7950	6.932901	TGCGAATTTCAGAAACAATTCATC	57.067	33.333	0.00	0.00	38.72	2.92

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	7	2.233922	TCGAGACAGTTGGATTCCCTTC	59.766	50.000	0.00	0.00	0.00	3.46
17	18	3.050619	GTCGTGATGTTTCGAGACAGTT	58.949	45.455	14.59	0.00	36.76	3.16
22	23	3.972403	TCTTTGTCGTGATGTTTCGAGA	58.028	40.909	0.00	0.00	36.76	4.04
26	27	3.120511	GGCTCTCTTTGTCGTGATGTTTC	60.121	47.826	0.00	0.00	0.00	2.78
30	31	1.728971	GTGGCTCTCTTTGTCGTGATG	59.271	52.381	0.00	0.00	0.00	3.07
40	41	1.599047	CATGGTCCGTGGCTCTCTT	59.401	57.895	2.78	0.00	0.00	2.85
57	58	0.320334	TCGAACATTGCTCTTCGGCA	60.320	50.000	7.71	0.00	39.78	5.69
65	66	2.427453	ACTATCTCGGTCGAACATTGCT	59.573	45.455	0.00	0.00	0.00	3.91
83	84	3.133721	GGTCTAGAGGAGGTGTACGACTA	59.866	52.174	0.00	0.00	0.00	2.59
129	130	2.975489	ACACAGTGGGATGTTTCTCTCT	59.025	45.455	0.00	0.00	0.00	3.10
142	143	0.882042	GCCTCACACAGACACAGTGG	60.882	60.000	5.31	0.00	41.21	4.00
145	146	0.882042	GTGGCCTCACACAGACACAG	60.882	60.000	3.32	0.00	43.13	3.66
146	147	1.146041	GTGGCCTCACACAGACACA	59.854	57.895	3.32	0.00	43.13	3.72
147	148	1.598130	GGTGGCCTCACACAGACAC	60.598	63.158	3.32	0.00	45.32	3.67
148	149	1.631071	TTGGTGGCCTCACACAGACA	61.631	55.000	3.32	0.00	45.32	3.41
149	150	0.465460	TTTGGTGGCCTCACACAGAC	60.465	55.000	3.32	0.00	45.32	3.51
150	151	0.465460	GTTTGGTGGCCTCACACAGA	60.465	55.000	3.32	0.00	45.32	3.41
164	165	4.447389	CCTTTTATGGCGTTTGAAGTTTGG	59.553	41.667	0.00	0.00	0.00	3.28
170	171	2.734276	GCCCTTTTATGGCGTTTGAA	57.266	45.000	0.00	0.00	39.48	2.69
182	183	1.196012	TTGGTTTTCGGTGCCCTTTT	58.804	45.000	0.00	0.00	0.00	2.27
183	184	1.419381	ATTGGTTTTCGGTGCCCTTT	58.581	45.000	0.00	0.00	0.00	3.11
196	197	1.338769	GGCAGTGACGAGGTATTGGTT	60.339	52.381	0.00	0.00	0.00	3.67
247	248	4.785376	AGTACCTTGGATCATCCTCTGTTT	59.215	41.667	4.96	0.00	37.46	2.83
249	250	3.708631	CAGTACCTTGGATCATCCTCTGT	59.291	47.826	4.96	1.67	37.46	3.41
299	300	3.961838	TTGTATGGCGGTGGCGGTC	62.962	63.158	0.00	0.00	41.24	4.79
384	385	6.333416	TGTTTGCTGCAACAAAACTGTATTA	58.667	32.000	16.41	0.00	40.99	0.98
386	387	4.753233	TGTTTGCTGCAACAAAACTGTAT	58.247	34.783	16.41	0.00	40.99	2.29
387	388	4.179926	TGTTTGCTGCAACAAAACTGTA	57.820	36.364	16.41	0.00	40.99	2.74
393	394	1.483827	TCCCATGTTTGCTGCAACAAA	59.516	42.857	15.72	11.14	37.20	2.83
687	731	7.362834	CCTTGCAAGTTGTTGGATGACATATAA	60.363	37.037	24.35	0.00	33.47	0.98
777	840	2.012673	CAGTCACTTGCTCCTAATGGC	58.987	52.381	0.00	0.00	0.00	4.40
786	849	4.523943	TGGATATTTTTGCAGTCACTTGCT	59.476	37.500	0.00	0.00	44.38	3.91
789	852	9.807649	GATTTATGGATATTTTTGCAGTCACTT	57.192	29.630	0.00	0.00	0.00	3.16
796	859	7.995289	ACACGAGATTTATGGATATTTTTGCA	58.005	30.769	0.00	0.00	0.00	4.08
822	885	7.507616	ACAAATTGGGTATGTAGTTTCCTGAAA	59.492	33.333	0.00	0.00	0.00	2.69
855	918	6.701841	TGAGATGAATTACCGACAGCTAATTC	59.298	38.462	9.49	9.49	38.80	2.17
893	963	2.826128	ACGGCTGAGTGATCTCTACAAA	59.174	45.455	0.00	0.00	40.98	2.83
904	974	1.078759	GAATCACGGACGGCTGAGTG	61.079	60.000	2.64	4.74	36.06	3.51
905	975	1.215647	GAATCACGGACGGCTGAGT	59.784	57.895	2.64	0.00	0.00	3.41
906	976	0.179100	ATGAATCACGGACGGCTGAG	60.179	55.000	2.64	0.00	0.00	3.35
927	997	2.093306	GGCAGGTTAAAATGGCAACC	57.907	50.000	9.17	0.00	43.82	3.77
988	1160	1.134007	GGGAGATGATGATGTGTGGCA	60.134	52.381	0.00	0.00	0.00	4.92
1010	1182	1.990614	GGTGGGAGGGAGGAGACAC	60.991	68.421	0.00	0.00	0.00	3.67
1024	1200	0.947244	GAAGACAAGTGCTGTGGTGG	59.053	55.000	0.00	0.00	38.84	4.61
1068	2543	1.836166	CATTCTCTCCTGCTTCCTCCA	59.164	52.381	0.00	0.00	0.00	3.86
1086	2561	1.051812	CCCGACATCTTAGCCTCCAT	58.948	55.000	0.00	0.00	0.00	3.41
1293	2805	4.351938	CCGGTCGCGGTCACTGAA	62.352	66.667	6.13	0.00	0.00	3.02
1358	2876	4.142534	CCATCGTCTTCTTACGTACAGGAA	60.143	45.833	0.00	0.00	43.31	3.36
1362	2880	4.379813	GGTTCCATCGTCTTCTTACGTACA	60.380	45.833	0.00	0.00	43.31	2.90
1448	2974	7.827819	TCATAAGAAGAATAACACAGGTTCG	57.172	36.000	0.00	0.00	38.45	3.95
1536	3067	4.772100	CCAGCTTTTCCCATCTTTTCCTTA	59.228	41.667	0.00	0.00	0.00	2.69
1544	3075	0.984230	TCGACCAGCTTTTCCCATCT	59.016	50.000	0.00	0.00	0.00	2.90
1548	3079	1.072505	TGGTCGACCAGCTTTTCCC	59.927	57.895	33.23	3.57	42.01	3.97
1584	3115	0.999406	CTACAATGCCGTCCGTTCAG	59.001	55.000	0.00	0.00	0.00	3.02
1595	3126	2.830772	TCGATTTGCTGCTACAATGC	57.169	45.000	0.00	0.00	0.00	3.56
1596	3127	6.968904	ACTTTTATCGATTTGCTGCTACAATG	59.031	34.615	1.71	0.00	0.00	2.82
1732	3271	7.318141	CCCTTTCATTATTATATTGCTGCCAG	58.682	38.462	0.00	0.00	0.00	4.85
1810	3353	5.392919	CGATAGACCAAATCAATGCCAAACA	60.393	40.000	0.00	0.00	39.76	2.83
1818	3361	7.215719	TCGATACTCGATAGACCAAATCAAT	57.784	36.000	0.00	0.00	44.82	2.57
1908	3451	6.831769	TCGATTTCAGTTCTTTATGAGTTGC	58.168	36.000	0.00	0.00	0.00	4.17
1928	3478	6.978338	TCGGTTAGCTGACTAATATTTCGAT	58.022	36.000	8.70	0.00	40.43	3.59
2066	3617	5.623956	TGTCTGGTTTGAGAAGTTAAGGA	57.376	39.130	0.00	0.00	0.00	3.36
2449	4860	3.433709	TGAAATCCACATATTTTGCGCG	58.566	40.909	0.00	0.00	0.00	6.86
2476	4888	6.964370	TCACGTACTTGTTTCAAGTTGAAATG	59.036	34.615	28.69	22.91	46.55	2.32
2567	5491	8.669946	TCGCATACTTATTTCAAATCCACATA	57.330	30.769	0.00	0.00	0.00	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.