Multiple sequence alignment - TraesCS6A01G071800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G071800 chr6A 100.000 4938 0 0 1 4938 39182170 39177233 0.000000e+00 9119.0
1 TraesCS6A01G071800 chr6B 86.927 2616 276 30 2019 4597 72378515 72375929 0.000000e+00 2876.0
2 TraesCS6A01G071800 chr6B 88.668 1306 73 33 715 1981 72380019 72378750 0.000000e+00 1522.0
3 TraesCS6A01G071800 chr6B 90.286 175 11 2 4770 4938 72340716 72340542 1.790000e-54 224.0
4 TraesCS6A01G071800 chr6B 96.552 58 2 0 4709 4766 72340803 72340746 4.070000e-16 97.1
5 TraesCS6A01G071800 chr6D 86.400 2625 228 56 2020 4600 34999012 34996473 0.000000e+00 2750.0
6 TraesCS6A01G071800 chr6D 88.599 1263 72 40 767 1982 35000254 34999017 0.000000e+00 1469.0
7 TraesCS6A01G071800 chr6D 86.617 269 15 6 4690 4938 34996338 34996071 1.350000e-70 278.0
8 TraesCS6A01G071800 chr7B 96.296 567 20 1 105 670 639411652 639412218 0.000000e+00 929.0
9 TraesCS6A01G071800 chr7B 93.460 581 34 4 92 670 732503918 732504496 0.000000e+00 859.0
10 TraesCS6A01G071800 chr7B 93.437 579 37 1 92 670 637869760 637869183 0.000000e+00 857.0
11 TraesCS6A01G071800 chr2B 95.797 571 24 0 100 670 794905819 794906389 0.000000e+00 922.0
12 TraesCS6A01G071800 chr2B 94.435 575 29 2 96 669 724630654 724630082 0.000000e+00 881.0
13 TraesCS6A01G071800 chr2B 94.149 564 32 1 92 654 724639538 724640101 0.000000e+00 857.0
14 TraesCS6A01G071800 chr2B 93.092 579 38 2 92 669 649467160 649466583 0.000000e+00 846.0
15 TraesCS6A01G071800 chr2B 95.652 92 4 0 1 92 794905488 794905579 1.110000e-31 148.0
16 TraesCS6A01G071800 chr2B 94.565 92 5 0 1 92 724631093 724631002 5.150000e-30 143.0
17 TraesCS6A01G071800 chr2B 94.382 89 5 0 4 92 724639396 724639484 2.400000e-28 137.0
18 TraesCS6A01G071800 chr5B 93.276 580 37 2 92 669 324985899 324986478 0.000000e+00 854.0
19 TraesCS6A01G071800 chr5B 95.652 92 4 0 1 92 687819352 687819261 1.110000e-31 148.0
20 TraesCS6A01G071800 chr5B 94.565 92 5 0 1 92 430260925 430261016 5.150000e-30 143.0
21 TraesCS6A01G071800 chr5A 92.637 584 37 3 92 670 545586234 545586816 0.000000e+00 835.0
22 TraesCS6A01G071800 chr1A 77.429 319 47 21 1245 1560 300859823 300859527 3.060000e-37 167.0
23 TraesCS6A01G071800 chr1A 89.167 120 13 0 1448 1567 520122996 520123115 3.080000e-32 150.0
24 TraesCS6A01G071800 chr1A 92.754 69 5 0 2055 2123 300859031 300858963 3.150000e-17 100.0
25 TraesCS6A01G071800 chr1D 89.655 116 12 0 1448 1563 423764199 423764314 1.110000e-31 148.0
26 TraesCS6A01G071800 chr1D 92.754 69 5 0 2055 2123 246937920 246937988 3.150000e-17 100.0
27 TraesCS6A01G071800 chr3B 94.565 92 5 0 1 92 202596895 202596804 5.150000e-30 143.0
28 TraesCS6A01G071800 chr3B 93.478 92 6 0 1 92 202596313 202596222 2.400000e-28 137.0
29 TraesCS6A01G071800 chr4D 94.505 91 5 0 1 91 497404771 497404681 1.850000e-29 141.0
30 TraesCS6A01G071800 chr1B 88.596 114 13 0 1448 1561 573216149 573216262 6.670000e-29 139.0
31 TraesCS6A01G071800 chr1B 86.726 113 15 0 1448 1560 331146464 331146352 5.190000e-25 126.0
32 TraesCS6A01G071800 chrUn 93.478 92 6 0 1 92 377037340 377037431 2.400000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G071800 chr6A 39177233 39182170 4937 True 9119 9119 100.000000 1 4938 1 chr6A.!!$R1 4937
1 TraesCS6A01G071800 chr6B 72375929 72380019 4090 True 2199 2876 87.797500 715 4597 2 chr6B.!!$R2 3882
2 TraesCS6A01G071800 chr6D 34996071 35000254 4183 True 1499 2750 87.205333 767 4938 3 chr6D.!!$R1 4171
3 TraesCS6A01G071800 chr7B 639411652 639412218 566 False 929 929 96.296000 105 670 1 chr7B.!!$F1 565
4 TraesCS6A01G071800 chr7B 732503918 732504496 578 False 859 859 93.460000 92 670 1 chr7B.!!$F2 578
5 TraesCS6A01G071800 chr7B 637869183 637869760 577 True 857 857 93.437000 92 670 1 chr7B.!!$R1 578
6 TraesCS6A01G071800 chr2B 649466583 649467160 577 True 846 846 93.092000 92 669 1 chr2B.!!$R1 577
7 TraesCS6A01G071800 chr2B 794905488 794906389 901 False 535 922 95.724500 1 670 2 chr2B.!!$F2 669
8 TraesCS6A01G071800 chr2B 724630082 724631093 1011 True 512 881 94.500000 1 669 2 chr2B.!!$R2 668
9 TraesCS6A01G071800 chr2B 724639396 724640101 705 False 497 857 94.265500 4 654 2 chr2B.!!$F1 650
10 TraesCS6A01G071800 chr5B 324985899 324986478 579 False 854 854 93.276000 92 669 1 chr5B.!!$F1 577
11 TraesCS6A01G071800 chr5A 545586234 545586816 582 False 835 835 92.637000 92 670 1 chr5A.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 1157 0.179108 GGATCACTGTCGTGGTAGCC 60.179 60.0 0.00 0.0 41.53 3.93 F
1437 1889 0.171455 AAGCTCACCGTCGATGTCTC 59.829 55.0 3.52 0.0 0.00 3.36 F
2246 2930 0.674895 GCGCAAACTCTGACCAGGAT 60.675 55.0 0.30 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2717 0.036577 CTGCTCCGATCCATCCATCC 60.037 60.0 0.00 0.00 0.00 3.51 R
2529 3214 0.099968 CATTGTCTGGGCATTGCTCG 59.900 55.0 8.82 1.33 0.00 5.03 R
4068 4783 0.030638 ATGTGCCAACGCTGTTGTTC 59.969 50.0 16.42 10.36 35.36 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.253758 TTGGTCAGCTGTGAAGCGC 61.254 57.895 14.67 0.00 40.27 5.92
48 49 4.291783 GTTATATCTGTCTCACTGCGTCC 58.708 47.826 0.00 0.00 0.00 4.79
98 497 5.475220 CGTCTTATGAGATCTCAGGGTATGT 59.525 44.000 28.26 13.74 43.61 2.29
118 517 4.638304 TGTAGTGTTTCTTGGCTCTAACC 58.362 43.478 0.00 0.00 0.00 2.85
158 561 1.185618 AAGCAGGCTACGGTGTCTCA 61.186 55.000 0.00 0.00 0.00 3.27
159 562 0.972983 AGCAGGCTACGGTGTCTCAT 60.973 55.000 0.00 0.00 0.00 2.90
168 571 2.724454 ACGGTGTCTCATAGCAGTACT 58.276 47.619 0.00 0.00 0.00 2.73
174 577 4.019858 TGTCTCATAGCAGTACTGAAGCT 58.980 43.478 27.08 18.16 42.14 3.74
235 638 4.229304 TGGGTTCAGTCTTTGTTGAGAA 57.771 40.909 0.00 0.00 0.00 2.87
237 640 5.013547 TGGGTTCAGTCTTTGTTGAGAAAA 58.986 37.500 0.00 0.00 0.00 2.29
257 660 4.516195 GCGAGTCCCTTCGGCTCC 62.516 72.222 0.00 0.00 40.79 4.70
294 697 3.063452 GGTGTGATAACATTGGTGCTACG 59.937 47.826 0.00 0.00 0.00 3.51
411 814 6.829229 AGCATCAAGTTCATCTCATCAAAA 57.171 33.333 0.00 0.00 0.00 2.44
444 847 2.094494 TGACATCTTCACGAAGCCTCTC 60.094 50.000 1.75 0.00 38.28 3.20
533 936 6.697641 AGATTGAGGAAGGGTGTTAAACTA 57.302 37.500 0.00 0.00 0.00 2.24
602 1006 6.043474 ACCTTGTACTTGTACCCTTTGATACA 59.957 38.462 8.25 0.00 0.00 2.29
658 1064 2.016318 TCGAGCAGTTGCCCAATATTG 58.984 47.619 8.58 8.58 43.38 1.90
670 1076 4.221703 TGCCCAATATTGTGGTTTAACAGG 59.778 41.667 14.25 5.39 36.90 4.00
671 1077 4.754322 CCCAATATTGTGGTTTAACAGGC 58.246 43.478 14.25 0.00 36.90 4.85
672 1078 4.466015 CCCAATATTGTGGTTTAACAGGCT 59.534 41.667 14.25 0.00 36.90 4.58
673 1079 5.410067 CCAATATTGTGGTTTAACAGGCTG 58.590 41.667 14.16 14.16 33.63 4.85
674 1080 5.184864 CCAATATTGTGGTTTAACAGGCTGA 59.815 40.000 23.66 0.00 33.63 4.26
675 1081 6.295011 CCAATATTGTGGTTTAACAGGCTGAA 60.295 38.462 23.66 5.80 33.63 3.02
676 1082 4.853924 ATTGTGGTTTAACAGGCTGAAG 57.146 40.909 23.66 0.00 0.00 3.02
677 1083 1.953686 TGTGGTTTAACAGGCTGAAGC 59.046 47.619 23.66 15.03 41.14 3.86
678 1084 1.953686 GTGGTTTAACAGGCTGAAGCA 59.046 47.619 23.66 17.52 44.36 3.91
679 1085 2.558359 GTGGTTTAACAGGCTGAAGCAT 59.442 45.455 23.66 4.24 44.36 3.79
685 1091 4.972875 AGGCTGAAGCATGGCTAC 57.027 55.556 4.43 0.00 44.36 3.58
686 1092 1.153289 AGGCTGAAGCATGGCTACG 60.153 57.895 4.43 0.00 44.36 3.51
687 1093 1.450312 GGCTGAAGCATGGCTACGT 60.450 57.895 4.43 0.00 44.36 3.57
688 1094 1.432270 GGCTGAAGCATGGCTACGTC 61.432 60.000 4.43 0.00 44.36 4.34
689 1095 0.460987 GCTGAAGCATGGCTACGTCT 60.461 55.000 0.00 0.00 38.25 4.18
690 1096 1.202417 GCTGAAGCATGGCTACGTCTA 60.202 52.381 0.00 0.00 38.25 2.59
691 1097 2.464865 CTGAAGCATGGCTACGTCTAC 58.535 52.381 0.00 0.00 38.25 2.59
692 1098 1.202256 TGAAGCATGGCTACGTCTACG 60.202 52.381 0.00 0.04 38.25 3.51
702 1108 4.286967 CGTCTACGTGCATCCTCG 57.713 61.111 0.00 0.00 34.11 4.63
703 1109 1.428219 CGTCTACGTGCATCCTCGT 59.572 57.895 0.00 5.39 42.89 4.18
704 1110 0.179171 CGTCTACGTGCATCCTCGTT 60.179 55.000 5.36 0.00 40.99 3.85
705 1111 1.731424 CGTCTACGTGCATCCTCGTTT 60.731 52.381 5.36 0.00 40.99 3.60
706 1112 1.654105 GTCTACGTGCATCCTCGTTTG 59.346 52.381 5.36 0.65 40.99 2.93
707 1113 1.542472 TCTACGTGCATCCTCGTTTGA 59.458 47.619 5.36 2.84 40.99 2.69
708 1114 2.029739 TCTACGTGCATCCTCGTTTGAA 60.030 45.455 5.36 0.00 40.99 2.69
709 1115 1.148310 ACGTGCATCCTCGTTTGAAG 58.852 50.000 0.00 0.00 37.88 3.02
710 1116 0.179215 CGTGCATCCTCGTTTGAAGC 60.179 55.000 0.00 0.00 0.00 3.86
711 1117 0.179215 GTGCATCCTCGTTTGAAGCG 60.179 55.000 0.00 0.00 0.00 4.68
712 1118 1.226128 GCATCCTCGTTTGAAGCGC 60.226 57.895 0.00 0.00 0.00 5.92
713 1119 1.059369 CATCCTCGTTTGAAGCGCG 59.941 57.895 0.00 0.00 0.00 6.86
739 1145 1.343789 CGAGAGATGCATGGGATCACT 59.656 52.381 2.46 0.00 0.00 3.41
743 1149 1.202615 AGATGCATGGGATCACTGTCG 60.203 52.381 2.46 0.00 0.00 4.35
751 1157 0.179108 GGATCACTGTCGTGGTAGCC 60.179 60.000 0.00 0.00 41.53 3.93
752 1158 0.530744 GATCACTGTCGTGGTAGCCA 59.469 55.000 0.00 0.00 41.53 4.75
753 1159 0.532573 ATCACTGTCGTGGTAGCCAG 59.467 55.000 0.00 0.00 41.53 4.85
865 1274 1.152383 GCCGCATTAGAACTCCCGAC 61.152 60.000 0.00 0.00 0.00 4.79
872 1281 1.250328 TAGAACTCCCGACGAAGCAA 58.750 50.000 0.00 0.00 0.00 3.91
944 1359 2.427232 AACGCTTGTTACTAGACGCA 57.573 45.000 0.00 0.00 32.95 5.24
945 1360 1.694639 ACGCTTGTTACTAGACGCAC 58.305 50.000 0.00 0.00 0.00 5.34
946 1361 0.633733 CGCTTGTTACTAGACGCACG 59.366 55.000 0.00 0.00 0.00 5.34
948 1363 0.989890 CTTGTTACTAGACGCACGCC 59.010 55.000 0.00 0.00 0.00 5.68
960 1375 4.248842 CACGCCCACCACAGACCA 62.249 66.667 0.00 0.00 0.00 4.02
961 1376 4.250305 ACGCCCACCACAGACCAC 62.250 66.667 0.00 0.00 0.00 4.16
962 1377 4.248842 CGCCCACCACAGACCACA 62.249 66.667 0.00 0.00 0.00 4.17
963 1378 2.281761 GCCCACCACAGACCACAG 60.282 66.667 0.00 0.00 0.00 3.66
964 1379 3.120086 GCCCACCACAGACCACAGT 62.120 63.158 0.00 0.00 0.00 3.55
965 1380 1.071471 CCCACCACAGACCACAGTC 59.929 63.158 0.00 0.00 43.89 3.51
966 1381 1.071471 CCACCACAGACCACAGTCC 59.929 63.158 0.00 0.00 44.72 3.85
967 1382 1.300931 CACCACAGACCACAGTCCG 60.301 63.158 0.00 0.00 44.72 4.79
968 1383 1.760875 ACCACAGACCACAGTCCGT 60.761 57.895 0.00 0.00 44.72 4.69
969 1384 1.300931 CCACAGACCACAGTCCGTG 60.301 63.158 3.16 3.16 46.63 4.94
970 1385 1.956170 CACAGACCACAGTCCGTGC 60.956 63.158 0.00 0.00 42.76 5.34
971 1386 2.421314 CAGACCACAGTCCGTGCA 59.579 61.111 0.00 0.00 44.72 4.57
977 1392 2.029073 ACAGTCCGTGCAAGTCCG 59.971 61.111 0.00 0.00 0.00 4.79
978 1393 3.414700 CAGTCCGTGCAAGTCCGC 61.415 66.667 0.00 0.00 0.00 5.54
1004 1419 2.409870 GCGCCACTTGGAAGATGGG 61.410 63.158 0.00 0.00 37.39 4.00
1035 1450 2.752238 CCCGTCGCTCTGTCCTCT 60.752 66.667 0.00 0.00 0.00 3.69
1036 1451 2.766400 CCCGTCGCTCTGTCCTCTC 61.766 68.421 0.00 0.00 0.00 3.20
1037 1452 1.747367 CCGTCGCTCTGTCCTCTCT 60.747 63.158 0.00 0.00 0.00 3.10
1049 1464 0.683828 TCCTCTCTCCTGCTGCTCAG 60.684 60.000 0.00 0.38 42.49 3.35
1167 1588 0.999406 CAAGTAATCCACGTGCTCCG 59.001 55.000 10.91 0.00 44.03 4.63
1188 1609 3.366070 CGTTCCCTATATACGCTGGTCTG 60.366 52.174 0.00 0.00 0.00 3.51
1196 1617 0.963856 TACGCTGGTCTGGTCATCGT 60.964 55.000 0.00 0.00 39.68 3.73
1207 1628 1.509162 GTCATCGTTTCGTTGGCGC 60.509 57.895 0.00 0.00 38.14 6.53
1218 1639 1.803519 GTTGGCGCGAGAGTCTGAG 60.804 63.158 12.10 0.00 0.00 3.35
1222 1643 2.101965 CGCGAGAGTCTGAGGCTG 59.898 66.667 0.00 0.00 0.00 4.85
1227 1648 1.337635 CGAGAGTCTGAGGCTGCTTTT 60.338 52.381 0.00 0.00 0.00 2.27
1229 1650 1.163554 GAGTCTGAGGCTGCTTTTGG 58.836 55.000 0.00 0.00 0.00 3.28
1316 1738 2.969827 CCGTCAAAACCATGGCCC 59.030 61.111 13.04 0.00 0.00 5.80
1357 1779 1.696097 GGCCCGGTACACCATCATCT 61.696 60.000 0.00 0.00 35.14 2.90
1437 1889 0.171455 AAGCTCACCGTCGATGTCTC 59.829 55.000 3.52 0.00 0.00 3.36
1591 2051 4.509600 GCTCGAAACTCCTCTCCATATTTG 59.490 45.833 0.00 0.00 0.00 2.32
1609 2069 1.801242 TGTTCTTCCTGACCTGACCA 58.199 50.000 0.00 0.00 0.00 4.02
1698 2178 3.044059 GCGTCGGGTACAGCTACGT 62.044 63.158 4.99 0.00 36.03 3.57
1713 2193 4.717629 CGTGGAGAACGCCAGCGA 62.718 66.667 20.32 0.00 46.99 4.93
1969 2451 3.263941 GCGGTGAGCGAAATGGTT 58.736 55.556 8.74 0.00 35.41 3.67
1974 2456 2.665519 CGGTGAGCGAAATGGTTTCTTG 60.666 50.000 0.00 0.00 37.52 3.02
1977 2459 3.191371 GTGAGCGAAATGGTTTCTTGGAT 59.809 43.478 0.00 0.00 37.52 3.41
1982 2646 5.710099 AGCGAAATGGTTTCTTGGATTTCTA 59.290 36.000 0.00 0.00 37.52 2.10
1992 2656 8.960591 GGTTTCTTGGATTTCTATTTGATCTCA 58.039 33.333 0.00 0.00 0.00 3.27
1998 2662 5.406780 GGATTTCTATTTGATCTCATCGCGT 59.593 40.000 5.77 0.00 0.00 6.01
2000 2664 6.993175 TTTCTATTTGATCTCATCGCGTAG 57.007 37.500 5.77 2.51 0.00 3.51
2037 2716 9.162764 TGTTAAGATTAATAAGAGCGCTCTTTT 57.837 29.630 46.58 37.53 46.95 2.27
2038 2717 9.427127 GTTAAGATTAATAAGAGCGCTCTTTTG 57.573 33.333 46.58 0.00 46.95 2.44
2039 2718 6.610741 AGATTAATAAGAGCGCTCTTTTGG 57.389 37.500 46.58 0.00 46.95 3.28
2040 2719 6.349300 AGATTAATAAGAGCGCTCTTTTGGA 58.651 36.000 46.58 33.32 46.95 3.53
2048 2727 2.018644 GCGCTCTTTTGGATGGATGGA 61.019 52.381 0.00 0.00 0.00 3.41
2049 2728 2.579873 CGCTCTTTTGGATGGATGGAT 58.420 47.619 0.00 0.00 0.00 3.41
2051 2730 2.551459 GCTCTTTTGGATGGATGGATCG 59.449 50.000 0.00 0.00 0.00 3.69
2052 2731 3.144506 CTCTTTTGGATGGATGGATCGG 58.855 50.000 0.00 0.00 0.00 4.18
2053 2732 2.777114 TCTTTTGGATGGATGGATCGGA 59.223 45.455 0.00 0.00 0.00 4.55
2149 2833 2.039418 ACATTCGAGCTACCATGCCTA 58.961 47.619 0.00 0.00 0.00 3.93
2154 2838 1.269831 CGAGCTACCATGCCTACCTTC 60.270 57.143 0.00 0.00 0.00 3.46
2157 2841 1.202698 GCTACCATGCCTACCTTCCTG 60.203 57.143 0.00 0.00 0.00 3.86
2170 2854 2.108250 ACCTTCCTGCCTTCTTGCTTAA 59.892 45.455 0.00 0.00 0.00 1.85
2173 2857 2.504367 TCCTGCCTTCTTGCTTAACAC 58.496 47.619 0.00 0.00 0.00 3.32
2177 2861 1.234821 CCTTCTTGCTTAACACGGCA 58.765 50.000 0.00 0.00 36.62 5.69
2178 2862 1.606668 CCTTCTTGCTTAACACGGCAA 59.393 47.619 0.00 0.00 44.64 4.52
2246 2930 0.674895 GCGCAAACTCTGACCAGGAT 60.675 55.000 0.30 0.00 0.00 3.24
2320 3004 0.878961 GTCGTGGACGGACTTGCTTT 60.879 55.000 0.00 0.00 40.29 3.51
2334 3018 5.049680 GGACTTGCTTTTGTTTATCGAGTCA 60.050 40.000 9.35 0.00 39.01 3.41
2343 3027 1.922570 TTATCGAGTCAAAGAGCGCC 58.077 50.000 2.29 0.00 0.00 6.53
2400 3084 7.893658 ACTTAGTGTAGCTTTCAACTAGCTTA 58.106 34.615 2.39 0.00 46.42 3.09
2401 3085 8.030106 ACTTAGTGTAGCTTTCAACTAGCTTAG 58.970 37.037 2.39 0.00 46.42 2.18
2405 3089 5.926542 TGTAGCTTTCAACTAGCTTAGTGTG 59.073 40.000 2.39 0.00 46.42 3.82
2407 3091 3.120165 GCTTTCAACTAGCTTAGTGTGGC 60.120 47.826 0.00 0.00 39.39 5.01
2482 3167 4.944317 ACCTATAACTTCTTGCTTGAAGCC 59.056 41.667 15.43 0.00 45.20 4.35
2560 3245 3.172050 CCAGACAATGAAGTACTCGACG 58.828 50.000 0.00 0.00 0.00 5.12
2590 3275 1.604185 CGCAAGGAGGCTACATCTAGC 60.604 57.143 0.00 0.00 44.34 3.42
2600 3285 2.119495 CTACATCTAGCCCCAACACCT 58.881 52.381 0.00 0.00 0.00 4.00
2602 3287 2.557869 ACATCTAGCCCCAACACCTTA 58.442 47.619 0.00 0.00 0.00 2.69
2617 3302 2.620115 CACCTTAAGCGGCATCATGAAT 59.380 45.455 0.00 0.00 0.00 2.57
2632 3317 3.117776 TCATGAATGGGGTCATCAAGGAG 60.118 47.826 0.00 0.00 36.04 3.69
2677 3362 1.414181 CTCACGTGGCAAGGGATATCT 59.586 52.381 17.00 0.00 0.00 1.98
2692 3377 4.262249 GGGATATCTGAGCTGGTCTACAAC 60.262 50.000 8.47 0.00 0.00 3.32
2708 3393 1.301716 AACGCGCTGGTCAATGACT 60.302 52.632 13.53 0.00 32.47 3.41
2830 3515 5.586243 AGGGACGATGTTTCACTAATTGATG 59.414 40.000 0.00 0.00 32.84 3.07
2837 3522 8.113062 CGATGTTTCACTAATTGATGAACTCTC 58.887 37.037 5.87 3.53 34.61 3.20
2875 3560 3.064207 TGATGAGTTGTTGTCTTACGGC 58.936 45.455 0.00 0.00 0.00 5.68
2887 3572 1.000052 TCTTACGGCGTGAATGTGACA 60.000 47.619 24.86 0.00 0.00 3.58
2907 3592 1.165270 GTGTACAATGGCCAGGTGAC 58.835 55.000 22.68 16.28 0.00 3.67
2930 3615 6.572519 ACTGTTGCTCTTCATTTTTGCTTAA 58.427 32.000 0.00 0.00 0.00 1.85
2951 3636 5.700402 AATGTCTCTGGCAAATAGTACCT 57.300 39.130 0.00 0.00 0.00 3.08
2953 3638 7.380423 AATGTCTCTGGCAAATAGTACCTAT 57.620 36.000 0.00 0.00 0.00 2.57
2962 3647 9.185680 CTGGCAAATAGTACCTATAAAAACCTT 57.814 33.333 0.00 0.00 0.00 3.50
3073 3782 9.793259 AGGAGTAATGAAAGAACATTTAGTCAA 57.207 29.630 0.00 0.00 40.36 3.18
3160 3869 5.120519 GGTGTCACCATGCAATTTACAAATG 59.879 40.000 17.59 0.00 38.42 2.32
3168 3877 6.128227 CCATGCAATTTACAAATGGAAACTGG 60.128 38.462 2.17 0.00 40.23 4.00
3170 3879 4.996758 GCAATTTACAAATGGAAACTGGCT 59.003 37.500 2.17 0.00 0.00 4.75
3199 3908 6.108015 TGTAACCAAGACACTAAAAACGACT 58.892 36.000 0.00 0.00 0.00 4.18
3200 3909 6.594937 TGTAACCAAGACACTAAAAACGACTT 59.405 34.615 0.00 0.00 0.00 3.01
3213 3922 8.009974 ACTAAAAACGACTTGATTTCATCTTCG 58.990 33.333 0.00 0.00 34.86 3.79
3242 3951 3.832276 GCAAATGGTTGATTGCTACGAA 58.168 40.909 3.41 0.00 46.42 3.85
3263 3972 5.799960 GAATGGTCGATGTACTGTCAATTG 58.200 41.667 0.00 0.00 0.00 2.32
3314 4025 4.723248 CATTTTGAGTAAGAAACGGCTCC 58.277 43.478 0.00 0.00 0.00 4.70
3330 4041 3.881688 CGGCTCCTGAATTTGAGATGAAT 59.118 43.478 5.15 0.00 0.00 2.57
3373 4084 5.657470 TCACATGAACTTTCGTCTTTCAG 57.343 39.130 0.00 0.00 32.91 3.02
3382 4093 7.222224 TGAACTTTCGTCTTTCAGTTTAGAGAC 59.778 37.037 0.00 0.00 36.14 3.36
3408 4119 1.762957 CTCCCACGGTCCACATTCTAT 59.237 52.381 0.00 0.00 0.00 1.98
3415 4126 2.548067 CGGTCCACATTCTATACCCAGC 60.548 54.545 0.00 0.00 0.00 4.85
3425 4136 7.502226 CACATTCTATACCCAGCTATTTCCAAA 59.498 37.037 0.00 0.00 0.00 3.28
3451 4164 2.653726 AGCATTTCATGAATGGGCGTA 58.346 42.857 9.40 0.00 44.34 4.42
3511 4224 8.203485 TCCAACAAATTTATTCTTGTGAAGCTT 58.797 29.630 0.00 0.00 35.95 3.74
3578 4291 1.004745 TCAAGTGAGGCCCTCAATTCC 59.995 52.381 22.74 7.22 43.78 3.01
3580 4293 0.915364 AGTGAGGCCCTCAATTCCTC 59.085 55.000 16.70 1.36 42.46 3.71
3592 4305 2.037121 TCAATTCCTCTGTCACGCTTCA 59.963 45.455 0.00 0.00 0.00 3.02
3598 4311 1.007271 CTGTCACGCTTCACCTCGT 60.007 57.895 0.00 0.00 39.79 4.18
3599 4312 1.004277 CTGTCACGCTTCACCTCGTC 61.004 60.000 0.00 0.00 36.73 4.20
3609 4322 3.686128 CTTCACCTCGTCGTTCAGATAG 58.314 50.000 0.00 0.00 0.00 2.08
3636 4349 2.084546 GCCCTCTAATCACGCTTTTGT 58.915 47.619 0.00 0.00 0.00 2.83
3651 4364 4.142816 CGCTTTTGTACTTTCAGATGGGAG 60.143 45.833 0.00 0.00 0.00 4.30
3666 4379 1.354368 TGGGAGGGGCTAAAGAACTTG 59.646 52.381 0.00 0.00 0.00 3.16
3672 4385 3.394606 AGGGGCTAAAGAACTTGACAAGA 59.605 43.478 21.95 0.00 0.00 3.02
3768 4481 1.693627 TCTACTGGATCCTTCGAGCC 58.306 55.000 14.23 0.00 45.40 4.70
3786 4499 1.876416 GCCGGACACTTTGTAAGCTCA 60.876 52.381 5.05 0.00 0.00 4.26
3788 4501 2.673368 CCGGACACTTTGTAAGCTCATC 59.327 50.000 0.00 0.00 0.00 2.92
3800 4513 8.681486 TTTGTAAGCTCATCAACATATATGCT 57.319 30.769 12.79 0.00 0.00 3.79
3833 4546 6.519382 TGGTGTCTTATATGATGCTCTTGAG 58.481 40.000 0.00 0.00 0.00 3.02
3947 4660 3.131396 CCGGCAAGTTAGATGATACACC 58.869 50.000 0.00 0.00 0.00 4.16
3952 4665 6.346096 GGCAAGTTAGATGATACACCAACTA 58.654 40.000 0.00 0.00 0.00 2.24
4042 4757 5.078949 TCATGATTCAGTGAAAACCCATGT 58.921 37.500 24.17 6.11 0.00 3.21
4068 4783 2.568509 ACCTTTGCTGATTGGATTTGGG 59.431 45.455 0.00 0.00 0.00 4.12
4086 4801 1.431440 GAACAACAGCGTTGGCACA 59.569 52.632 20.19 0.00 43.41 4.57
4107 4822 3.287867 TCATTCCCTTCTTGGAGATGC 57.712 47.619 0.00 0.00 38.35 3.91
4109 4824 3.267812 TCATTCCCTTCTTGGAGATGCTT 59.732 43.478 0.00 0.00 38.35 3.91
4112 4827 3.724478 TCCCTTCTTGGAGATGCTTCTA 58.276 45.455 1.44 0.00 38.35 2.10
4114 4829 5.467738 TCCCTTCTTGGAGATGCTTCTATA 58.532 41.667 1.44 0.00 38.35 1.31
4116 4831 5.279910 CCCTTCTTGGAGATGCTTCTATAGG 60.280 48.000 1.44 3.84 38.35 2.57
4120 4835 5.772672 TCTTGGAGATGCTTCTATAGGAGAC 59.227 44.000 12.63 4.07 32.31 3.36
4131 4846 7.014711 TGCTTCTATAGGAGACTTGTATTCCTG 59.985 40.741 12.63 2.05 41.33 3.86
4134 4849 8.053776 TCTATAGGAGACTTGTATTCCTGGTA 57.946 38.462 13.35 7.79 41.33 3.25
4150 4865 3.831911 CCTGGTATTGTCATGGTTTGGTT 59.168 43.478 0.00 0.00 0.00 3.67
4157 4872 3.295093 TGTCATGGTTTGGTTGATGTGT 58.705 40.909 0.00 0.00 0.00 3.72
4175 4890 0.657840 GTCTGCTTGGTGTGTGTCAC 59.342 55.000 0.00 0.00 45.47 3.67
4188 4903 3.882888 TGTGTGTCACCATTTCTCTTTCC 59.117 43.478 0.00 0.00 32.73 3.13
4191 4906 5.763204 GTGTGTCACCATTTCTCTTTCCTTA 59.237 40.000 0.00 0.00 0.00 2.69
4193 4908 7.606456 GTGTGTCACCATTTCTCTTTCCTTATA 59.394 37.037 0.00 0.00 0.00 0.98
4244 4961 5.812642 TCCTCGATGTTTTGAATAGCTCTTC 59.187 40.000 4.93 4.93 0.00 2.87
4267 4984 7.511959 TCATATCGTGTTGTTATAGAGAGCT 57.488 36.000 0.00 0.00 0.00 4.09
4268 4985 8.617290 TCATATCGTGTTGTTATAGAGAGCTA 57.383 34.615 0.00 0.00 0.00 3.32
4276 4993 8.414778 GTGTTGTTATAGAGAGCTAGGTGTAAT 58.585 37.037 0.00 0.00 0.00 1.89
4367 5093 4.414999 AATAAAAAGACTTTCCGCCGAC 57.585 40.909 0.00 0.00 0.00 4.79
4371 5097 0.038159 AAGACTTTCCGCCGACTGAG 60.038 55.000 0.00 0.00 0.00 3.35
4390 5124 1.806542 AGTTAGTCGCCATTGTTGCTG 59.193 47.619 0.00 0.00 0.00 4.41
4404 5138 0.108585 TTGCTGCCCTTCTTCGTCTT 59.891 50.000 0.00 0.00 0.00 3.01
4429 5169 1.680651 CCTCTCTCGTGCCTCCTGT 60.681 63.158 0.00 0.00 0.00 4.00
4463 5203 1.024271 GCACCTCTTGTTGCTTGTGA 58.976 50.000 0.00 0.00 0.00 3.58
4466 5206 0.954452 CCTCTTGTTGCTTGTGACCC 59.046 55.000 0.00 0.00 0.00 4.46
4476 5216 0.764890 CTTGTGACCCCCTCAACAGA 59.235 55.000 0.00 0.00 0.00 3.41
4481 5221 1.889530 GACCCCCTCAACAGAGACCG 61.890 65.000 0.00 0.00 0.00 4.79
4498 5238 1.624813 ACCGAGGTGGGTCGATAAAAA 59.375 47.619 0.00 0.00 42.85 1.94
4509 5249 6.526674 GTGGGTCGATAAAAATTGTAGCAAAG 59.473 38.462 0.00 0.00 0.00 2.77
4510 5250 6.431543 TGGGTCGATAAAAATTGTAGCAAAGA 59.568 34.615 0.00 0.00 0.00 2.52
4512 5252 7.810759 GGGTCGATAAAAATTGTAGCAAAGAAA 59.189 33.333 0.00 0.00 0.00 2.52
4513 5253 9.187455 GGTCGATAAAAATTGTAGCAAAGAAAA 57.813 29.630 0.00 0.00 0.00 2.29
4556 5296 8.929487 ACTATTTTTCCAATGTTAAAGGTCCAA 58.071 29.630 0.00 0.00 0.00 3.53
4557 5297 9.771534 CTATTTTTCCAATGTTAAAGGTCCAAA 57.228 29.630 0.00 0.00 0.00 3.28
4558 5298 8.675705 ATTTTTCCAATGTTAAAGGTCCAAAG 57.324 30.769 0.00 0.00 0.00 2.77
4559 5299 5.799827 TTCCAATGTTAAAGGTCCAAAGG 57.200 39.130 0.00 0.00 0.00 3.11
4560 5300 4.810345 TCCAATGTTAAAGGTCCAAAGGT 58.190 39.130 0.00 0.00 0.00 3.50
4561 5301 5.212745 TCCAATGTTAAAGGTCCAAAGGTT 58.787 37.500 0.00 0.00 0.00 3.50
4606 5346 8.145767 TGAAGAAGTATATTACATACAACCCCG 58.854 37.037 0.00 0.00 0.00 5.73
4607 5347 7.607615 AGAAGTATATTACATACAACCCCGT 57.392 36.000 0.00 0.00 0.00 5.28
4608 5348 8.710749 AGAAGTATATTACATACAACCCCGTA 57.289 34.615 0.00 0.00 0.00 4.02
4610 5350 9.762933 GAAGTATATTACATACAACCCCGTAAA 57.237 33.333 0.00 0.00 0.00 2.01
4611 5351 9.768662 AAGTATATTACATACAACCCCGTAAAG 57.231 33.333 0.00 0.00 0.00 1.85
4612 5352 9.146586 AGTATATTACATACAACCCCGTAAAGA 57.853 33.333 0.00 0.00 0.00 2.52
4613 5353 9.762933 GTATATTACATACAACCCCGTAAAGAA 57.237 33.333 0.00 0.00 0.00 2.52
4615 5355 7.999450 ATTACATACAACCCCGTAAAGAAAA 57.001 32.000 0.00 0.00 0.00 2.29
4616 5356 5.694231 ACATACAACCCCGTAAAGAAAAC 57.306 39.130 0.00 0.00 0.00 2.43
4617 5357 5.379187 ACATACAACCCCGTAAAGAAAACT 58.621 37.500 0.00 0.00 0.00 2.66
4618 5358 6.532826 ACATACAACCCCGTAAAGAAAACTA 58.467 36.000 0.00 0.00 0.00 2.24
4619 5359 7.170277 ACATACAACCCCGTAAAGAAAACTAT 58.830 34.615 0.00 0.00 0.00 2.12
4620 5360 8.320617 ACATACAACCCCGTAAAGAAAACTATA 58.679 33.333 0.00 0.00 0.00 1.31
4621 5361 9.333724 CATACAACCCCGTAAAGAAAACTATAT 57.666 33.333 0.00 0.00 0.00 0.86
4622 5362 9.910267 ATACAACCCCGTAAAGAAAACTATATT 57.090 29.630 0.00 0.00 0.00 1.28
4624 5364 9.166173 ACAACCCCGTAAAGAAAACTATATTAC 57.834 33.333 0.00 0.00 0.00 1.89
4625 5365 8.330302 CAACCCCGTAAAGAAAACTATATTACG 58.670 37.037 8.84 8.84 44.92 3.18
4626 5366 7.555965 ACCCCGTAAAGAAAACTATATTACGT 58.444 34.615 13.25 0.00 44.25 3.57
4628 5368 8.968242 CCCCGTAAAGAAAACTATATTACGTAC 58.032 37.037 13.25 0.00 44.25 3.67
4629 5369 9.736023 CCCGTAAAGAAAACTATATTACGTACT 57.264 33.333 13.25 0.00 44.25 2.73
4661 5444 8.840833 AATATATTTGTATCATGGCGTGTACA 57.159 30.769 6.60 11.36 0.00 2.90
4662 5445 9.448438 AATATATTTGTATCATGGCGTGTACAT 57.552 29.630 17.05 9.89 30.19 2.29
4663 5446 5.673337 ATTTGTATCATGGCGTGTACATC 57.327 39.130 17.05 0.00 30.19 3.06
4664 5447 3.810310 TGTATCATGGCGTGTACATCA 57.190 42.857 6.60 0.00 0.00 3.07
4665 5448 4.335400 TGTATCATGGCGTGTACATCAT 57.665 40.909 6.60 1.17 0.00 2.45
4668 5451 1.762370 TCATGGCGTGTACATCATCCT 59.238 47.619 6.60 0.00 0.00 3.24
4669 5452 2.962421 TCATGGCGTGTACATCATCCTA 59.038 45.455 6.60 0.00 0.00 2.94
4672 5455 3.527533 TGGCGTGTACATCATCCTAAAC 58.472 45.455 0.00 0.00 0.00 2.01
4674 5457 3.802685 GGCGTGTACATCATCCTAAACTC 59.197 47.826 0.00 0.00 0.00 3.01
4676 5459 4.732647 GCGTGTACATCATCCTAAACTCGA 60.733 45.833 0.00 0.00 0.00 4.04
4677 5460 5.337554 CGTGTACATCATCCTAAACTCGAA 58.662 41.667 0.00 0.00 0.00 3.71
4678 5461 5.803461 CGTGTACATCATCCTAAACTCGAAA 59.197 40.000 0.00 0.00 0.00 3.46
4679 5462 6.309494 CGTGTACATCATCCTAAACTCGAAAA 59.691 38.462 0.00 0.00 0.00 2.29
4681 5464 7.544566 GTGTACATCATCCTAAACTCGAAAAGA 59.455 37.037 0.00 0.00 0.00 2.52
4682 5465 8.092068 TGTACATCATCCTAAACTCGAAAAGAA 58.908 33.333 0.00 0.00 0.00 2.52
4683 5466 7.979444 ACATCATCCTAAACTCGAAAAGAAA 57.021 32.000 0.00 0.00 0.00 2.52
4684 5467 7.807680 ACATCATCCTAAACTCGAAAAGAAAC 58.192 34.615 0.00 0.00 0.00 2.78
4685 5468 6.462073 TCATCCTAAACTCGAAAAGAAACG 57.538 37.500 0.00 0.00 0.00 3.60
4686 5469 6.218019 TCATCCTAAACTCGAAAAGAAACGA 58.782 36.000 0.00 0.00 37.03 3.85
4699 5482 5.405331 AAAGAAACGAGAGAAAACGGAAG 57.595 39.130 0.00 0.00 0.00 3.46
4705 5488 2.416162 CGAGAGAAAACGGAAGAGGAGG 60.416 54.545 0.00 0.00 0.00 4.30
4721 5504 1.104630 GAGGGGGACGTTGAGTAGAG 58.895 60.000 0.00 0.00 0.00 2.43
4734 5517 0.248843 AGTAGAGGAGCAGCACAAGC 59.751 55.000 0.00 0.00 42.56 4.01
4739 5522 0.677098 AGGAGCAGCACAAGCATCAG 60.677 55.000 0.00 0.00 45.49 2.90
4766 5549 1.386533 CCAAGCCAAGAATCGCATCT 58.613 50.000 0.00 0.00 0.00 2.90
4767 5550 1.332997 CCAAGCCAAGAATCGCATCTC 59.667 52.381 0.00 0.00 0.00 2.75
4768 5551 2.011947 CAAGCCAAGAATCGCATCTCA 58.988 47.619 0.00 0.00 0.00 3.27
4769 5552 1.950828 AGCCAAGAATCGCATCTCAG 58.049 50.000 0.00 0.00 0.00 3.35
4778 5577 4.512914 GCATCTCAGGGGCCCACC 62.513 72.222 27.72 7.11 39.11 4.61
4807 5606 2.027625 GGTCCACGCTGTTTCCTCG 61.028 63.158 0.00 0.00 0.00 4.63
4821 5620 2.672996 CTCGTTTGGCCCCACCTG 60.673 66.667 0.00 0.00 40.22 4.00
4830 5629 2.520536 GCCCCACCTGTCAGTGTCT 61.521 63.158 0.00 0.00 35.93 3.41
4831 5630 2.056906 GCCCCACCTGTCAGTGTCTT 62.057 60.000 0.00 0.00 35.93 3.01
4833 5632 0.886490 CCCACCTGTCAGTGTCTTGC 60.886 60.000 0.00 0.00 35.93 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.920340 GTGAGACAGATATAACGCAGGATG 59.080 45.833 0.00 0.00 40.87 3.51
48 49 2.025887 AGGTTGGAGGAGCAAACCATAG 60.026 50.000 6.58 0.00 44.81 2.23
98 497 4.591498 TCAGGTTAGAGCCAAGAAACACTA 59.409 41.667 0.00 0.00 0.00 2.74
118 517 0.580578 CGAGCATTCCAAGCGATCAG 59.419 55.000 0.00 0.00 37.01 2.90
158 561 4.950475 TGTACTCAGCTTCAGTACTGCTAT 59.050 41.667 23.98 4.18 44.54 2.97
159 562 4.332828 TGTACTCAGCTTCAGTACTGCTA 58.667 43.478 23.98 7.60 44.54 3.49
168 571 3.475566 ACTGCTTTGTACTCAGCTTCA 57.524 42.857 15.27 0.00 0.00 3.02
257 660 1.605710 CACACCAAAGCACTGGAGAAG 59.394 52.381 10.83 1.41 38.96 2.85
294 697 7.602644 TGAAACACTGGATTAGATGACAAGTAC 59.397 37.037 0.00 0.00 0.00 2.73
411 814 4.694509 GTGAAGATGTCAGCAAGTTGATCT 59.305 41.667 7.16 2.60 36.74 2.75
444 847 1.953686 CCTACAAACTGTGGTTGTGGG 59.046 52.381 14.63 14.63 35.63 4.61
602 1006 7.093289 GGGGTGCGGCTATCTCATTATATATAT 60.093 40.741 0.00 0.00 0.00 0.86
632 1036 2.280797 GCAACTGCTCGACACCCA 60.281 61.111 0.00 0.00 38.21 4.51
658 1064 1.953686 TGCTTCAGCCTGTTAAACCAC 59.046 47.619 0.00 0.00 41.18 4.16
670 1076 0.460987 AGACGTAGCCATGCTTCAGC 60.461 55.000 0.00 0.00 40.44 4.26
671 1077 2.464865 GTAGACGTAGCCATGCTTCAG 58.535 52.381 0.00 0.00 40.44 3.02
672 1078 1.202256 CGTAGACGTAGCCATGCTTCA 60.202 52.381 0.00 0.00 40.44 3.02
673 1079 1.478137 CGTAGACGTAGCCATGCTTC 58.522 55.000 0.00 0.00 40.44 3.86
674 1080 3.642901 CGTAGACGTAGCCATGCTT 57.357 52.632 0.00 0.00 40.44 3.91
685 1091 0.179171 AACGAGGATGCACGTAGACG 60.179 55.000 10.40 0.00 41.87 4.18
686 1092 1.654105 CAAACGAGGATGCACGTAGAC 59.346 52.381 10.40 0.00 41.87 2.59
687 1093 1.542472 TCAAACGAGGATGCACGTAGA 59.458 47.619 10.40 8.87 41.87 2.59
688 1094 1.990799 TCAAACGAGGATGCACGTAG 58.009 50.000 10.40 6.67 41.87 3.51
689 1095 2.333926 CTTCAAACGAGGATGCACGTA 58.666 47.619 10.40 0.00 41.87 3.57
690 1096 1.148310 CTTCAAACGAGGATGCACGT 58.852 50.000 3.48 3.48 44.57 4.49
691 1097 0.179215 GCTTCAAACGAGGATGCACG 60.179 55.000 1.95 1.95 35.98 5.34
692 1098 0.179215 CGCTTCAAACGAGGATGCAC 60.179 55.000 0.00 0.00 35.76 4.57
693 1099 1.911293 GCGCTTCAAACGAGGATGCA 61.911 55.000 0.00 0.00 35.76 3.96
694 1100 1.226128 GCGCTTCAAACGAGGATGC 60.226 57.895 0.00 0.00 33.50 3.91
695 1101 1.059369 CGCGCTTCAAACGAGGATG 59.941 57.895 5.56 0.00 0.00 3.51
696 1102 3.474806 CGCGCTTCAAACGAGGAT 58.525 55.556 5.56 0.00 0.00 3.24
699 1105 4.445545 GGCCGCGCTTCAAACGAG 62.446 66.667 5.56 0.00 0.00 4.18
713 1119 4.615815 ATGCATCTCTCGCCGGCC 62.616 66.667 23.46 4.19 0.00 6.13
739 1145 2.656646 CTGCTGGCTACCACGACA 59.343 61.111 0.00 0.00 0.00 4.35
751 1157 2.039405 GGCTTGGTCAGAGCTGCTG 61.039 63.158 7.01 0.00 46.31 4.41
752 1158 2.350514 GGCTTGGTCAGAGCTGCT 59.649 61.111 0.00 0.00 40.01 4.24
753 1159 3.123620 CGGCTTGGTCAGAGCTGC 61.124 66.667 0.00 5.51 39.43 5.25
783 1191 1.917303 CAATTACGCCGGCAATTTCAC 59.083 47.619 28.98 0.00 0.00 3.18
818 1227 0.526211 AGCAGCATCAGTCGTAACGA 59.474 50.000 0.00 0.00 0.00 3.85
865 1274 2.249337 TGCGCATAAACAATTGCTTCG 58.751 42.857 5.66 1.19 36.71 3.79
872 1281 2.951642 ACATAGGCTGCGCATAAACAAT 59.048 40.909 12.24 0.00 0.00 2.71
895 1304 1.666209 AATAGGTGCCGCCATTGTGC 61.666 55.000 0.00 0.00 40.61 4.57
943 1358 4.248842 TGGTCTGTGGTGGGCGTG 62.249 66.667 0.00 0.00 0.00 5.34
944 1359 4.250305 GTGGTCTGTGGTGGGCGT 62.250 66.667 0.00 0.00 0.00 5.68
945 1360 4.248842 TGTGGTCTGTGGTGGGCG 62.249 66.667 0.00 0.00 0.00 6.13
946 1361 2.281761 CTGTGGTCTGTGGTGGGC 60.282 66.667 0.00 0.00 0.00 5.36
948 1363 1.071471 GGACTGTGGTCTGTGGTGG 59.929 63.158 0.00 0.00 41.82 4.61
960 1375 2.029073 CGGACTTGCACGGACTGT 59.971 61.111 0.00 0.00 0.00 3.55
961 1376 3.414700 GCGGACTTGCACGGACTG 61.415 66.667 0.00 0.00 34.15 3.51
966 1381 2.735677 TTATGCGCGGACTTGCACG 61.736 57.895 8.83 0.00 45.07 5.34
967 1382 1.226018 GTTATGCGCGGACTTGCAC 60.226 57.895 8.83 0.00 45.07 4.57
968 1383 2.735677 CGTTATGCGCGGACTTGCA 61.736 57.895 8.83 0.00 46.51 4.08
969 1384 2.021380 CGTTATGCGCGGACTTGC 59.979 61.111 8.83 0.00 0.00 4.01
1049 1464 2.125188 GAGACAGGCAGCAGAGGC 60.125 66.667 0.00 0.00 41.61 4.70
1167 1588 3.056749 CCAGACCAGCGTATATAGGGAAC 60.057 52.174 4.69 0.00 0.00 3.62
1188 1609 1.131826 CGCCAACGAAACGATGACC 59.868 57.895 0.00 0.00 43.93 4.02
1196 1617 2.019951 GACTCTCGCGCCAACGAAA 61.020 57.895 0.00 0.00 42.39 3.46
1207 1628 0.246086 AAAGCAGCCTCAGACTCTCG 59.754 55.000 0.00 0.00 0.00 4.04
1218 1639 1.670295 CACCAAAAACCAAAAGCAGCC 59.330 47.619 0.00 0.00 0.00 4.85
1222 1643 3.070748 ACACACACCAAAAACCAAAAGC 58.929 40.909 0.00 0.00 0.00 3.51
1227 1648 1.344438 TGCAACACACACCAAAAACCA 59.656 42.857 0.00 0.00 0.00 3.67
1229 1650 2.923020 CTCTGCAACACACACCAAAAAC 59.077 45.455 0.00 0.00 0.00 2.43
1259 1681 3.368531 GGCTCTTGTAGTACCACCAGAAG 60.369 52.174 0.00 0.00 0.00 2.85
1316 1738 3.947132 CTGCAGCCAGAGGACGGTG 62.947 68.421 0.00 0.00 41.77 4.94
1348 1770 6.872585 AAGAAGAGAAGAGAAGATGATGGT 57.127 37.500 0.00 0.00 0.00 3.55
1409 1831 1.290955 CGGTGAGCTTTCGGTGGTA 59.709 57.895 0.00 0.00 0.00 3.25
1413 1835 1.874345 ATCGACGGTGAGCTTTCGGT 61.874 55.000 0.00 5.83 32.28 4.69
1414 1836 1.153823 ATCGACGGTGAGCTTTCGG 60.154 57.895 0.00 3.10 32.28 4.30
1437 1889 4.200283 GCTCCCTGCTCGACGGAG 62.200 72.222 8.19 8.19 45.12 4.63
1591 2051 1.694696 ACTGGTCAGGTCAGGAAGAAC 59.305 52.381 2.87 0.00 36.62 3.01
1609 2069 0.040603 GAACACGTTCCGACTCGACT 60.041 55.000 0.00 0.00 33.64 4.18
1698 2178 4.742201 GCTCGCTGGCGTTCTCCA 62.742 66.667 14.55 0.00 40.74 3.86
1924 2404 1.153765 CGGCGAGATGAAGCTGTCA 60.154 57.895 0.00 0.00 41.67 3.58
1961 2441 9.927668 TCAAATAGAAATCCAAGAAACCATTTC 57.072 29.630 0.00 0.00 39.96 2.17
1969 2451 9.049523 CGATGAGATCAAATAGAAATCCAAGAA 57.950 33.333 0.00 0.00 0.00 2.52
1974 2456 5.406780 ACGCGATGAGATCAAATAGAAATCC 59.593 40.000 15.93 0.00 0.00 3.01
1977 2459 5.402568 GCTACGCGATGAGATCAAATAGAAA 59.597 40.000 15.93 0.00 0.00 2.52
1982 2646 3.097877 TGCTACGCGATGAGATCAAAT 57.902 42.857 15.93 0.00 0.00 2.32
1988 2652 2.328473 GCATTATGCTACGCGATGAGA 58.672 47.619 15.93 0.00 40.96 3.27
1989 2653 2.776694 GCATTATGCTACGCGATGAG 57.223 50.000 15.93 8.20 40.96 2.90
2006 2670 6.701937 CGCTCTTATTAATCTTAACAACGCA 58.298 36.000 0.00 0.00 0.00 5.24
2007 2671 5.615982 GCGCTCTTATTAATCTTAACAACGC 59.384 40.000 0.00 0.00 0.00 4.84
2008 2672 6.934210 AGCGCTCTTATTAATCTTAACAACG 58.066 36.000 2.64 0.00 0.00 4.10
2009 2673 8.132604 AGAGCGCTCTTATTAATCTTAACAAC 57.867 34.615 33.83 2.42 36.31 3.32
2037 2716 0.763986 TGCTCCGATCCATCCATCCA 60.764 55.000 0.00 0.00 0.00 3.41
2038 2717 0.036577 CTGCTCCGATCCATCCATCC 60.037 60.000 0.00 0.00 0.00 3.51
2039 2718 0.673022 GCTGCTCCGATCCATCCATC 60.673 60.000 0.00 0.00 0.00 3.51
2040 2719 1.126329 AGCTGCTCCGATCCATCCAT 61.126 55.000 0.00 0.00 0.00 3.41
2052 2731 2.025441 CGCGTAGGAGAGCTGCTC 59.975 66.667 21.72 21.72 43.17 4.26
2053 2732 4.200283 GCGCGTAGGAGAGCTGCT 62.200 66.667 8.43 0.00 34.09 4.24
2149 2833 0.480252 AAGCAAGAAGGCAGGAAGGT 59.520 50.000 0.00 0.00 35.83 3.50
2154 2838 1.197721 CGTGTTAAGCAAGAAGGCAGG 59.802 52.381 0.00 0.00 35.83 4.85
2157 2841 0.109735 GCCGTGTTAAGCAAGAAGGC 60.110 55.000 0.00 0.00 43.34 4.35
2320 3004 3.122948 GCGCTCTTTGACTCGATAAACAA 59.877 43.478 0.00 0.00 0.00 2.83
2334 3018 0.882927 TTACAACGCTGGCGCTCTTT 60.883 50.000 15.04 0.00 44.19 2.52
2343 3027 3.120991 GCTAGTTCACACTTACAACGCTG 60.121 47.826 0.00 0.00 34.06 5.18
2400 3084 4.016444 TCAAAGAAGTTGAAAGCCACACT 58.984 39.130 0.00 0.00 43.43 3.55
2401 3085 4.370364 TCAAAGAAGTTGAAAGCCACAC 57.630 40.909 0.00 0.00 43.43 3.82
2529 3214 0.099968 CATTGTCTGGGCATTGCTCG 59.900 55.000 8.82 1.33 0.00 5.03
2560 3245 1.153549 CTCCTTGCGGCTGAGGTAC 60.154 63.158 18.13 0.00 34.57 3.34
2582 3267 1.372501 AAGGTGTTGGGGCTAGATGT 58.627 50.000 0.00 0.00 0.00 3.06
2588 3273 1.303317 CGCTTAAGGTGTTGGGGCT 60.303 57.895 4.29 0.00 0.00 5.19
2590 3275 2.340328 GCCGCTTAAGGTGTTGGGG 61.340 63.158 4.29 0.00 35.90 4.96
2600 3285 1.955778 CCCATTCATGATGCCGCTTAA 59.044 47.619 0.00 0.00 34.25 1.85
2602 3287 1.111116 CCCCATTCATGATGCCGCTT 61.111 55.000 0.00 0.00 34.25 4.68
2617 3302 0.620556 GCTTCTCCTTGATGACCCCA 59.379 55.000 0.00 0.00 0.00 4.96
2632 3317 3.359950 ACTGGGGATGATTTTGAGCTTC 58.640 45.455 0.00 0.00 0.00 3.86
2677 3362 1.080772 CGCGTTGTAGACCAGCTCA 60.081 57.895 0.00 0.00 0.00 4.26
2692 3377 1.291184 TGAAGTCATTGACCAGCGCG 61.291 55.000 13.14 0.00 32.18 6.86
2708 3393 4.470602 TCGTCTATCCTAGGCTTCATGAA 58.529 43.478 8.12 8.12 0.00 2.57
2798 3483 0.316204 AACATCGTCCCTTTCGTCGT 59.684 50.000 0.00 0.00 0.00 4.34
2830 3515 3.190118 CCTGTGGAAATTGCAGAGAGTTC 59.810 47.826 12.93 0.00 30.66 3.01
2837 3522 3.256383 TCATCAACCTGTGGAAATTGCAG 59.744 43.478 0.00 0.00 0.00 4.41
2875 3560 4.377328 CCATTGTACACTGTCACATTCACG 60.377 45.833 11.76 0.00 0.00 4.35
2887 3572 1.064003 TCACCTGGCCATTGTACACT 58.936 50.000 5.51 0.00 0.00 3.55
2907 3592 7.170320 ACATTAAGCAAAAATGAAGAGCAACAG 59.830 33.333 11.29 0.00 37.68 3.16
2974 3659 6.136071 CGCCTATAATAATTCACAAGCACAC 58.864 40.000 0.00 0.00 0.00 3.82
2976 3661 6.300354 ACGCCTATAATAATTCACAAGCAC 57.700 37.500 0.00 0.00 0.00 4.40
3047 3750 9.793259 TTGACTAAATGTTCTTTCATTACTCCT 57.207 29.630 0.00 0.00 37.09 3.69
3073 3782 9.487790 AATTTCACGGTGATTTGATTTGTAATT 57.512 25.926 12.26 7.79 0.00 1.40
3084 3793 8.661352 ATTTCAAGAAAATTTCACGGTGATTT 57.339 26.923 12.26 9.62 33.69 2.17
3117 3826 7.809806 GTGACACCATTTCTCTTTCTAAATTGG 59.190 37.037 0.00 0.00 0.00 3.16
3154 3863 4.649218 ACAAGTTAGCCAGTTTCCATTTGT 59.351 37.500 0.00 0.00 0.00 2.83
3160 3869 4.139038 TGGTTACAAGTTAGCCAGTTTCC 58.861 43.478 0.00 0.00 0.00 3.13
3213 3922 3.665745 ATCAACCATTTGCTTCACACC 57.334 42.857 0.00 0.00 32.17 4.16
3224 3933 4.016444 ACCATTCGTAGCAATCAACCATT 58.984 39.130 0.00 0.00 0.00 3.16
3242 3951 4.081142 TCCAATTGACAGTACATCGACCAT 60.081 41.667 7.12 0.00 0.00 3.55
3263 3972 2.429610 TGCTAATCTGGTACCTTCGTCC 59.570 50.000 14.36 0.00 0.00 4.79
3266 3975 3.809832 CCATTGCTAATCTGGTACCTTCG 59.190 47.826 14.36 1.70 0.00 3.79
3365 4076 6.049790 AGTGGTTGTCTCTAAACTGAAAGAC 58.950 40.000 0.00 0.00 38.86 3.01
3372 4083 3.071167 GTGGGAGTGGTTGTCTCTAAACT 59.929 47.826 0.00 0.00 33.06 2.66
3373 4084 3.400255 GTGGGAGTGGTTGTCTCTAAAC 58.600 50.000 0.00 0.00 33.06 2.01
3382 4093 2.032071 GGACCGTGGGAGTGGTTG 59.968 66.667 0.00 0.00 38.99 3.77
3408 4119 6.490040 GCTATTCATTTGGAAATAGCTGGGTA 59.510 38.462 16.09 0.00 39.39 3.69
3481 4194 9.528018 TTCACAAGAATAAATTTGTTGGACTTC 57.472 29.630 4.76 0.00 35.46 3.01
3490 4203 9.199982 ACATCAAGCTTCACAAGAATAAATTTG 57.800 29.630 0.00 0.00 32.31 2.32
3491 4204 9.199982 CACATCAAGCTTCACAAGAATAAATTT 57.800 29.630 0.00 0.00 32.31 1.82
3497 4210 5.944599 AGATCACATCAAGCTTCACAAGAAT 59.055 36.000 0.00 0.00 32.31 2.40
3511 4224 1.094785 TCGTCGAGCAGATCACATCA 58.905 50.000 0.00 0.00 0.00 3.07
3578 4291 0.730834 CGAGGTGAAGCGTGACAGAG 60.731 60.000 0.00 0.00 0.00 3.35
3580 4293 1.004277 GACGAGGTGAAGCGTGACAG 61.004 60.000 0.00 0.00 41.34 3.51
3592 4305 1.743958 CACCTATCTGAACGACGAGGT 59.256 52.381 0.00 0.00 40.35 3.85
3598 4311 1.476891 GGCTCACACCTATCTGAACGA 59.523 52.381 0.00 0.00 0.00 3.85
3599 4312 1.471676 GGGCTCACACCTATCTGAACG 60.472 57.143 0.00 0.00 0.00 3.95
3609 4322 1.471676 CGTGATTAGAGGGCTCACACC 60.472 57.143 3.66 0.00 39.36 4.16
3636 4349 1.213296 GCCCCTCCCATCTGAAAGTA 58.787 55.000 0.00 0.00 33.76 2.24
3651 4364 3.502595 GTCTTGTCAAGTTCTTTAGCCCC 59.497 47.826 12.30 0.00 0.00 5.80
3666 4379 0.312102 GTTGCCTTGGCAGTCTTGTC 59.688 55.000 14.33 0.00 0.00 3.18
3672 4385 3.511610 AGGGGTTGCCTTGGCAGT 61.512 61.111 14.33 0.00 0.00 4.40
3768 4481 3.325870 TGATGAGCTTACAAAGTGTCCG 58.674 45.455 0.00 0.00 0.00 4.79
3786 4499 6.243900 CAAGGAGGGAAGCATATATGTTGAT 58.756 40.000 14.14 0.00 0.00 2.57
3788 4501 4.763793 CCAAGGAGGGAAGCATATATGTTG 59.236 45.833 14.14 7.14 0.00 3.33
3800 4513 5.285401 TCATATAAGACACCAAGGAGGGAA 58.715 41.667 0.00 0.00 43.89 3.97
3833 4546 4.142315 ACATGCACCAATATCAACTTCAGC 60.142 41.667 0.00 0.00 0.00 4.26
3907 4620 2.399580 GGAGACTGGGTTATGCTACCT 58.600 52.381 0.00 0.00 38.30 3.08
3908 4621 1.068741 CGGAGACTGGGTTATGCTACC 59.931 57.143 0.00 0.00 37.47 3.18
3972 4686 2.557869 ACAATAGAGCTACCCCACCAA 58.442 47.619 0.00 0.00 0.00 3.67
3973 4687 2.263895 ACAATAGAGCTACCCCACCA 57.736 50.000 0.00 0.00 0.00 4.17
3974 4688 2.367894 GGTACAATAGAGCTACCCCACC 59.632 54.545 0.00 0.00 0.00 4.61
4042 4757 1.073125 TCCAATCAGCAAAGGTCGGAA 59.927 47.619 0.00 0.00 0.00 4.30
4068 4783 0.030638 ATGTGCCAACGCTGTTGTTC 59.969 50.000 16.42 10.36 35.36 3.18
4075 4790 1.315257 GGGAATGATGTGCCAACGCT 61.315 55.000 0.00 0.00 35.36 5.07
4080 4795 2.449464 CAAGAAGGGAATGATGTGCCA 58.551 47.619 0.00 0.00 0.00 4.92
4086 4801 3.462579 AGCATCTCCAAGAAGGGAATGAT 59.537 43.478 0.00 0.00 36.27 2.45
4107 4822 7.507616 ACCAGGAATACAAGTCTCCTATAGAAG 59.492 40.741 0.00 0.00 37.49 2.85
4109 4824 6.923670 ACCAGGAATACAAGTCTCCTATAGA 58.076 40.000 0.00 0.00 37.49 1.98
4112 4827 7.569111 ACAATACCAGGAATACAAGTCTCCTAT 59.431 37.037 0.00 0.42 37.49 2.57
4114 4829 5.726793 ACAATACCAGGAATACAAGTCTCCT 59.273 40.000 0.00 0.00 40.33 3.69
4116 4831 6.640518 TGACAATACCAGGAATACAAGTCTC 58.359 40.000 0.00 0.00 0.00 3.36
4120 4835 6.122277 ACCATGACAATACCAGGAATACAAG 58.878 40.000 0.00 0.00 0.00 3.16
4131 4846 5.047377 ACATCAACCAAACCATGACAATACC 60.047 40.000 0.00 0.00 0.00 2.73
4134 4849 4.344679 ACACATCAACCAAACCATGACAAT 59.655 37.500 0.00 0.00 0.00 2.71
4150 4865 1.134128 ACACACCAAGCAGACACATCA 60.134 47.619 0.00 0.00 0.00 3.07
4157 4872 3.079131 GTGACACACACCAAGCAGA 57.921 52.632 0.00 0.00 43.05 4.26
4204 4919 6.429692 ACATCGAGGATTCACACAACAAAATA 59.570 34.615 3.06 0.00 0.00 1.40
4244 4961 7.965655 CCTAGCTCTCTATAACAACACGATATG 59.034 40.741 0.00 0.00 0.00 1.78
4345 5064 4.517832 AGTCGGCGGAAAGTCTTTTTATTT 59.482 37.500 7.21 0.00 0.00 1.40
4346 5065 4.070009 AGTCGGCGGAAAGTCTTTTTATT 58.930 39.130 7.21 0.00 0.00 1.40
4347 5066 3.435671 CAGTCGGCGGAAAGTCTTTTTAT 59.564 43.478 7.21 0.00 0.00 1.40
4348 5067 2.803956 CAGTCGGCGGAAAGTCTTTTTA 59.196 45.455 7.21 0.00 0.00 1.52
4349 5068 1.602377 CAGTCGGCGGAAAGTCTTTTT 59.398 47.619 7.21 0.00 0.00 1.94
4350 5069 1.202604 TCAGTCGGCGGAAAGTCTTTT 60.203 47.619 7.21 0.00 0.00 2.27
4351 5070 0.391597 TCAGTCGGCGGAAAGTCTTT 59.608 50.000 7.21 0.00 0.00 2.52
4352 5071 0.038159 CTCAGTCGGCGGAAAGTCTT 60.038 55.000 7.21 0.00 0.00 3.01
4353 5072 1.179814 ACTCAGTCGGCGGAAAGTCT 61.180 55.000 7.21 0.00 0.00 3.24
4354 5073 0.319641 AACTCAGTCGGCGGAAAGTC 60.320 55.000 7.21 0.00 0.00 3.01
4355 5074 0.963962 TAACTCAGTCGGCGGAAAGT 59.036 50.000 7.21 3.08 0.00 2.66
4367 5093 2.159653 GCAACAATGGCGACTAACTCAG 60.160 50.000 0.00 0.00 0.00 3.35
4371 5097 1.729149 GCAGCAACAATGGCGACTAAC 60.729 52.381 0.00 0.00 36.08 2.34
4379 5105 0.971386 AAGAAGGGCAGCAACAATGG 59.029 50.000 0.00 0.00 0.00 3.16
4390 5124 1.014564 CACCGAAGACGAAGAAGGGC 61.015 60.000 0.00 0.00 42.66 5.19
4404 5138 2.333417 GCACGAGAGAGGTCACCGA 61.333 63.158 0.00 0.00 0.00 4.69
4437 5177 1.856802 CAACAAGAGGTGCAAAAGGC 58.143 50.000 0.00 0.00 45.13 4.35
4452 5192 1.150536 GAGGGGGTCACAAGCAACA 59.849 57.895 0.00 0.00 0.00 3.33
4453 5193 0.467290 TTGAGGGGGTCACAAGCAAC 60.467 55.000 0.00 0.00 33.71 4.17
4463 5203 1.913762 CGGTCTCTGTTGAGGGGGT 60.914 63.158 0.00 0.00 40.58 4.95
4466 5206 1.893786 CCTCGGTCTCTGTTGAGGG 59.106 63.158 0.00 0.00 43.45 4.30
4481 5221 5.220796 GCTACAATTTTTATCGACCCACCTC 60.221 44.000 0.00 0.00 0.00 3.85
4531 5271 9.771534 TTTGGACCTTTAACATTGGAAAAATAG 57.228 29.630 0.00 0.00 0.00 1.73
4534 5274 7.051000 CCTTTGGACCTTTAACATTGGAAAAA 58.949 34.615 0.00 0.00 0.00 1.94
4535 5275 6.157123 ACCTTTGGACCTTTAACATTGGAAAA 59.843 34.615 0.00 0.00 0.00 2.29
4536 5276 5.663556 ACCTTTGGACCTTTAACATTGGAAA 59.336 36.000 0.00 0.00 0.00 3.13
4537 5277 5.212745 ACCTTTGGACCTTTAACATTGGAA 58.787 37.500 0.00 0.00 0.00 3.53
4598 5338 9.166173 GTAATATAGTTTTCTTTACGGGGTTGT 57.834 33.333 0.00 0.00 0.00 3.32
4600 5340 8.040727 ACGTAATATAGTTTTCTTTACGGGGTT 58.959 33.333 15.28 0.00 42.98 4.11
4601 5341 7.555965 ACGTAATATAGTTTTCTTTACGGGGT 58.444 34.615 15.28 0.00 42.98 4.95
4602 5342 8.968242 GTACGTAATATAGTTTTCTTTACGGGG 58.032 37.037 15.28 0.00 42.98 5.73
4603 5343 9.736023 AGTACGTAATATAGTTTTCTTTACGGG 57.264 33.333 15.28 0.00 42.98 5.28
4637 5420 9.098355 GATGTACACGCCATGATACAAATATAT 57.902 33.333 0.00 0.00 32.32 0.86
4653 5436 3.486108 CGAGTTTAGGATGATGTACACGC 59.514 47.826 0.00 0.00 0.00 5.34
4654 5437 4.916870 TCGAGTTTAGGATGATGTACACG 58.083 43.478 0.00 0.00 0.00 4.49
4655 5438 7.544566 TCTTTTCGAGTTTAGGATGATGTACAC 59.455 37.037 0.00 0.00 0.00 2.90
4656 5439 7.608153 TCTTTTCGAGTTTAGGATGATGTACA 58.392 34.615 0.00 0.00 0.00 2.90
4657 5440 8.475331 TTCTTTTCGAGTTTAGGATGATGTAC 57.525 34.615 0.00 0.00 0.00 2.90
4658 5441 8.932791 GTTTCTTTTCGAGTTTAGGATGATGTA 58.067 33.333 0.00 0.00 0.00 2.29
4659 5442 7.360101 CGTTTCTTTTCGAGTTTAGGATGATGT 60.360 37.037 0.00 0.00 0.00 3.06
4660 5443 6.955963 CGTTTCTTTTCGAGTTTAGGATGATG 59.044 38.462 0.00 0.00 0.00 3.07
4661 5444 6.872020 TCGTTTCTTTTCGAGTTTAGGATGAT 59.128 34.615 0.00 0.00 0.00 2.45
4662 5445 6.218019 TCGTTTCTTTTCGAGTTTAGGATGA 58.782 36.000 0.00 0.00 0.00 2.92
4663 5446 6.462073 TCGTTTCTTTTCGAGTTTAGGATG 57.538 37.500 0.00 0.00 0.00 3.51
4664 5447 6.707599 CTCGTTTCTTTTCGAGTTTAGGAT 57.292 37.500 6.44 0.00 45.37 3.24
4674 5457 4.026310 TCCGTTTTCTCTCGTTTCTTTTCG 60.026 41.667 0.00 0.00 0.00 3.46
4676 5459 5.583457 TCTTCCGTTTTCTCTCGTTTCTTTT 59.417 36.000 0.00 0.00 0.00 2.27
4677 5460 5.114081 TCTTCCGTTTTCTCTCGTTTCTTT 58.886 37.500 0.00 0.00 0.00 2.52
4678 5461 4.690122 TCTTCCGTTTTCTCTCGTTTCTT 58.310 39.130 0.00 0.00 0.00 2.52
4679 5462 4.299978 CTCTTCCGTTTTCTCTCGTTTCT 58.700 43.478 0.00 0.00 0.00 2.52
4681 5464 3.069158 TCCTCTTCCGTTTTCTCTCGTTT 59.931 43.478 0.00 0.00 0.00 3.60
4682 5465 2.626743 TCCTCTTCCGTTTTCTCTCGTT 59.373 45.455 0.00 0.00 0.00 3.85
4683 5466 2.229302 CTCCTCTTCCGTTTTCTCTCGT 59.771 50.000 0.00 0.00 0.00 4.18
4684 5467 2.416162 CCTCCTCTTCCGTTTTCTCTCG 60.416 54.545 0.00 0.00 0.00 4.04
4685 5468 2.093921 CCCTCCTCTTCCGTTTTCTCTC 60.094 54.545 0.00 0.00 0.00 3.20
4686 5469 1.903183 CCCTCCTCTTCCGTTTTCTCT 59.097 52.381 0.00 0.00 0.00 3.10
4688 5471 0.984995 CCCCTCCTCTTCCGTTTTCT 59.015 55.000 0.00 0.00 0.00 2.52
4689 5472 0.035343 CCCCCTCCTCTTCCGTTTTC 60.035 60.000 0.00 0.00 0.00 2.29
4693 5476 2.039137 GTCCCCCTCCTCTTCCGT 59.961 66.667 0.00 0.00 0.00 4.69
4694 5477 3.148279 CGTCCCCCTCCTCTTCCG 61.148 72.222 0.00 0.00 0.00 4.30
4699 5482 0.324091 TACTCAACGTCCCCCTCCTC 60.324 60.000 0.00 0.00 0.00 3.71
4705 5488 1.104630 CTCCTCTACTCAACGTCCCC 58.895 60.000 0.00 0.00 0.00 4.81
4721 5504 1.801332 CTGATGCTTGTGCTGCTCC 59.199 57.895 0.00 0.00 40.48 4.70
4734 5517 2.178890 GCTTGGCTCGAGGCTGATG 61.179 63.158 35.12 23.03 41.69 3.07
4739 5522 3.130160 CTTGGCTTGGCTCGAGGC 61.130 66.667 30.53 30.53 40.35 4.70
4807 5606 1.903404 CTGACAGGTGGGGCCAAAC 60.903 63.158 4.39 0.00 40.61 2.93
4821 5620 1.160329 AGGCGTTGCAAGACACTGAC 61.160 55.000 0.00 0.00 0.00 3.51
4845 5644 2.487265 CCCGCCACCTTTATGAGCTAAT 60.487 50.000 0.00 0.00 0.00 1.73
4848 5647 1.224592 CCCGCCACCTTTATGAGCT 59.775 57.895 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.