Multiple sequence alignment - TraesCS6A01G071400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G071400 chr6A 100.000 3627 0 0 1 3627 39142257 39145883 0.000000e+00 6698.0
1 TraesCS6A01G071400 chr6A 93.023 129 9 0 102 230 86015010 86014882 4.780000e-44 189.0
2 TraesCS6A01G071400 chr6A 82.500 80 14 0 189 268 39142382 39142461 1.810000e-08 71.3
3 TraesCS6A01G071400 chr6B 87.420 1399 122 30 1224 2597 72179344 72180713 0.000000e+00 1559.0
4 TraesCS6A01G071400 chr6B 91.474 563 38 4 3066 3627 72182967 72183520 0.000000e+00 765.0
5 TraesCS6A01G071400 chr6B 90.104 384 24 4 842 1225 72178834 72179203 1.510000e-133 486.0
6 TraesCS6A01G071400 chr6B 89.474 266 25 2 957 1222 708550989 708551251 2.090000e-87 333.0
7 TraesCS6A01G071400 chr6B 91.813 171 12 1 2823 2991 72181031 72181201 1.680000e-58 237.0
8 TraesCS6A01G071400 chr6B 98.148 108 2 0 265 372 715670437 715670544 4.780000e-44 189.0
9 TraesCS6A01G071400 chr6B 82.716 81 12 2 189 268 585904106 585904027 1.810000e-08 71.3
10 TraesCS6A01G071400 chr6D 90.302 1093 91 10 1600 2687 34973495 34974577 0.000000e+00 1417.0
11 TraesCS6A01G071400 chr6D 90.065 463 37 8 3066 3523 34975049 34975507 3.120000e-165 592.0
12 TraesCS6A01G071400 chr6D 89.899 396 20 8 842 1222 34972548 34972938 3.250000e-135 492.0
13 TraesCS6A01G071400 chr6D 90.536 317 20 6 2691 3002 34974644 34974955 9.370000e-111 411.0
14 TraesCS6A01G071400 chr6D 88.115 244 22 4 1224 1467 34973073 34973309 2.130000e-72 283.0
15 TraesCS6A01G071400 chr4B 94.705 491 25 1 270 760 68116880 68116391 0.000000e+00 761.0
16 TraesCS6A01G071400 chr4B 97.817 229 3 2 371 599 489367515 489367289 9.440000e-106 394.0
17 TraesCS6A01G071400 chr4B 91.489 47 3 1 21 67 258789521 258789566 3.020000e-06 63.9
18 TraesCS6A01G071400 chr3A 87.442 430 50 4 331 758 487443006 487442579 3.250000e-135 492.0
19 TraesCS6A01G071400 chr3A 96.203 237 8 1 371 607 623797306 623797071 1.580000e-103 387.0
20 TraesCS6A01G071400 chr3A 93.798 129 8 0 102 230 45864844 45864716 1.030000e-45 195.0
21 TraesCS6A01G071400 chr3A 91.304 46 4 0 18 63 629226901 629226946 3.020000e-06 63.9
22 TraesCS6A01G071400 chr2A 99.127 229 0 2 371 598 24386565 24386338 9.370000e-111 411.0
23 TraesCS6A01G071400 chr1A 99.550 222 1 0 368 589 97821581 97821360 4.360000e-109 405.0
24 TraesCS6A01G071400 chr1A 97.222 180 5 0 581 760 472539919 472540098 4.550000e-79 305.0
25 TraesCS6A01G071400 chr1A 93.798 129 8 0 102 230 248121063 248120935 1.030000e-45 195.0
26 TraesCS6A01G071400 chr1A 92.424 132 10 0 99 230 205391821 205391952 4.780000e-44 189.0
27 TraesCS6A01G071400 chr1A 84.337 83 7 4 189 268 349590103 349590182 3.880000e-10 76.8
28 TraesCS6A01G071400 chr1A 91.111 45 4 0 21 65 441741171 441741127 1.090000e-05 62.1
29 TraesCS6A01G071400 chr1A 91.111 45 4 0 21 65 566432652 566432608 1.090000e-05 62.1
30 TraesCS6A01G071400 chr4A 83.841 427 55 11 271 689 590657522 590657102 9.440000e-106 394.0
31 TraesCS6A01G071400 chr4A 90.977 133 8 1 260 392 68956683 68956811 3.720000e-40 176.0
32 TraesCS6A01G071400 chr4A 82.051 78 14 0 190 267 83769753 83769830 2.340000e-07 67.6
33 TraesCS6A01G071400 chr7B 96.996 233 7 0 367 599 491109095 491109327 3.400000e-105 392.0
34 TraesCS6A01G071400 chr7B 94.416 197 11 0 562 758 426524324 426524520 1.640000e-78 303.0
35 TraesCS6A01G071400 chr7B 92.481 133 10 0 267 399 426523952 426524084 1.330000e-44 191.0
36 TraesCS6A01G071400 chr1B 91.822 269 19 3 957 1225 40485477 40485742 4.420000e-99 372.0
37 TraesCS6A01G071400 chr1B 89.583 48 5 0 18 65 519082658 519082705 1.090000e-05 62.1
38 TraesCS6A01G071400 chr5B 91.078 269 21 3 957 1225 416466937 416466672 9.570000e-96 361.0
39 TraesCS6A01G071400 chr5B 93.564 202 13 0 1024 1225 421519294 421519093 5.890000e-78 302.0
40 TraesCS6A01G071400 chr5B 93.434 198 13 0 561 758 65246068 65246265 9.850000e-76 294.0
41 TraesCS6A01G071400 chr5B 93.043 115 8 0 1297 1411 416466545 416466431 6.230000e-38 169.0
42 TraesCS6A01G071400 chr5B 93.182 44 3 0 21 64 492134447 492134404 8.410000e-07 65.8
43 TraesCS6A01G071400 chr2D 80.118 508 75 18 263 758 8383833 8384326 4.450000e-94 355.0
44 TraesCS6A01G071400 chr2D 94.309 123 7 0 101 223 131235438 131235560 4.780000e-44 189.0
45 TraesCS6A01G071400 chr2D 91.241 137 11 1 95 230 501303979 501303843 6.180000e-43 185.0
46 TraesCS6A01G071400 chr2B 84.393 346 46 7 376 716 24850155 24850497 2.090000e-87 333.0
47 TraesCS6A01G071400 chr2B 98.286 175 3 0 588 762 105747500 105747674 1.270000e-79 307.0
48 TraesCS6A01G071400 chr2B 95.122 41 2 0 228 268 364133946 364133906 8.410000e-07 65.8
49 TraesCS6A01G071400 chr3B 97.753 178 4 0 588 765 187879598 187879421 1.270000e-79 307.0
50 TraesCS6A01G071400 chr3B 91.045 134 6 5 262 395 187148410 187148283 3.720000e-40 176.0
51 TraesCS6A01G071400 chr3B 89.552 134 10 1 262 395 102969110 102968981 2.240000e-37 167.0
52 TraesCS6A01G071400 chr3B 85.965 57 7 1 21 77 828146903 828146958 3.910000e-05 60.2
53 TraesCS6A01G071400 chr3B 100.000 29 0 0 2659 2687 507274520 507274548 2.000000e-03 54.7
54 TraesCS6A01G071400 chr7A 93.798 129 8 0 102 230 690995073 690994945 1.030000e-45 195.0
55 TraesCS6A01G071400 chr7A 95.122 41 2 0 228 268 211737414 211737454 8.410000e-07 65.8
56 TraesCS6A01G071400 chrUn 98.148 108 2 0 265 372 50070129 50070022 4.780000e-44 189.0
57 TraesCS6A01G071400 chrUn 82.716 81 12 2 189 268 343192753 343192674 1.810000e-08 71.3
58 TraesCS6A01G071400 chrUn 91.111 45 4 0 21 65 12064505 12064549 1.090000e-05 62.1
59 TraesCS6A01G071400 chr5A 95.000 120 6 0 111 230 50201649 50201530 4.780000e-44 189.0
60 TraesCS6A01G071400 chr5A 92.424 132 10 0 99 230 323134292 323134423 4.780000e-44 189.0
61 TraesCS6A01G071400 chr5A 93.333 45 3 0 21 65 195824355 195824311 2.340000e-07 67.6
62 TraesCS6A01G071400 chr5A 95.122 41 2 0 228 268 1757971 1758011 8.410000e-07 65.8
63 TraesCS6A01G071400 chr4D 98.148 108 2 0 265 372 440036914 440037021 4.780000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G071400 chr6A 39142257 39145883 3626 False 3384.65 6698 91.25000 1 3627 2 chr6A.!!$F1 3626
1 TraesCS6A01G071400 chr6B 72178834 72183520 4686 False 761.75 1559 90.20275 842 3627 4 chr6B.!!$F3 2785
2 TraesCS6A01G071400 chr6D 34972548 34975507 2959 False 639.00 1417 89.78340 842 3523 5 chr6D.!!$F1 2681
3 TraesCS6A01G071400 chr7B 426523952 426524520 568 False 247.00 303 93.44850 267 758 2 chr7B.!!$F2 491
4 TraesCS6A01G071400 chr5B 416466431 416466937 506 True 265.00 361 92.06050 957 1411 2 chr5B.!!$R3 454

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
797 898 0.034756 TGACGCCTTGCTTTAGCTGA 59.965 50.0 0.00 0.0 42.66 4.26 F
805 906 0.038067 TGCTTTAGCTGACGCCGTTA 60.038 50.0 4.47 0.0 42.66 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2584 3005 0.689623 CCAGCTCCTCCTTTGTCAGT 59.310 55.000 0.0 0.0 0.00 3.41 R
2689 3110 1.816224 CCCCGTCCCAAATTAGTTGTG 59.184 52.381 0.0 0.0 35.23 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.595709 TTTTGAGCTAAAACCACGACG 57.404 42.857 0.00 0.00 33.48 5.12
40 41 2.512485 TTGAGCTAAAACCACGACGA 57.488 45.000 0.00 0.00 0.00 4.20
41 42 2.060326 TGAGCTAAAACCACGACGAG 57.940 50.000 0.00 0.00 0.00 4.18
42 43 1.338973 TGAGCTAAAACCACGACGAGT 59.661 47.619 0.00 0.00 0.00 4.18
43 44 2.553602 TGAGCTAAAACCACGACGAGTA 59.446 45.455 0.00 0.00 0.00 2.59
44 45 3.004629 TGAGCTAAAACCACGACGAGTAA 59.995 43.478 0.00 0.00 0.00 2.24
45 46 4.171754 GAGCTAAAACCACGACGAGTAAT 58.828 43.478 0.00 0.00 0.00 1.89
46 47 4.563061 AGCTAAAACCACGACGAGTAATT 58.437 39.130 0.00 1.08 0.00 1.40
47 48 4.992951 AGCTAAAACCACGACGAGTAATTT 59.007 37.500 0.00 0.34 0.00 1.82
48 49 5.077424 GCTAAAACCACGACGAGTAATTTG 58.923 41.667 0.00 1.17 0.00 2.32
49 50 5.107375 GCTAAAACCACGACGAGTAATTTGA 60.107 40.000 0.00 0.00 0.00 2.69
50 51 5.738118 AAAACCACGACGAGTAATTTGAA 57.262 34.783 0.00 0.00 0.00 2.69
51 52 5.738118 AAACCACGACGAGTAATTTGAAA 57.262 34.783 0.00 0.00 0.00 2.69
52 53 5.934935 AACCACGACGAGTAATTTGAAAT 57.065 34.783 0.00 0.00 0.00 2.17
53 54 5.277601 ACCACGACGAGTAATTTGAAATG 57.722 39.130 0.00 0.00 0.00 2.32
54 55 4.992319 ACCACGACGAGTAATTTGAAATGA 59.008 37.500 0.00 0.00 0.00 2.57
55 56 5.467399 ACCACGACGAGTAATTTGAAATGAA 59.533 36.000 0.00 0.00 0.00 2.57
56 57 6.017770 ACCACGACGAGTAATTTGAAATGAAA 60.018 34.615 0.00 0.00 0.00 2.69
57 58 6.853872 CCACGACGAGTAATTTGAAATGAAAA 59.146 34.615 0.00 0.00 0.00 2.29
58 59 7.059488 CCACGACGAGTAATTTGAAATGAAAAG 59.941 37.037 0.00 0.00 0.00 2.27
59 60 7.796660 CACGACGAGTAATTTGAAATGAAAAGA 59.203 33.333 0.00 0.00 0.00 2.52
60 61 8.009974 ACGACGAGTAATTTGAAATGAAAAGAG 58.990 33.333 0.00 0.00 0.00 2.85
61 62 8.009974 CGACGAGTAATTTGAAATGAAAAGAGT 58.990 33.333 0.00 0.00 0.00 3.24
72 73 8.848474 TGAAATGAAAAGAGTACTTAGGAAGG 57.152 34.615 0.00 0.00 35.05 3.46
73 74 7.883311 TGAAATGAAAAGAGTACTTAGGAAGGG 59.117 37.037 0.00 0.00 35.05 3.95
74 75 7.569599 AATGAAAAGAGTACTTAGGAAGGGA 57.430 36.000 0.00 0.00 35.05 4.20
75 76 6.607004 TGAAAAGAGTACTTAGGAAGGGAG 57.393 41.667 0.00 0.00 35.05 4.30
76 77 6.082707 TGAAAAGAGTACTTAGGAAGGGAGT 58.917 40.000 0.00 0.00 35.05 3.85
77 78 6.014499 TGAAAAGAGTACTTAGGAAGGGAGTG 60.014 42.308 0.00 0.00 35.05 3.51
78 79 4.678538 AGAGTACTTAGGAAGGGAGTGT 57.321 45.455 0.00 0.00 0.00 3.55
79 80 5.793034 AGAGTACTTAGGAAGGGAGTGTA 57.207 43.478 0.00 0.00 0.00 2.90
80 81 6.344232 AGAGTACTTAGGAAGGGAGTGTAT 57.656 41.667 0.00 0.00 0.00 2.29
81 82 7.463054 AGAGTACTTAGGAAGGGAGTGTATA 57.537 40.000 0.00 0.00 0.00 1.47
82 83 7.880623 AGAGTACTTAGGAAGGGAGTGTATAA 58.119 38.462 0.00 0.00 0.00 0.98
83 84 8.512813 AGAGTACTTAGGAAGGGAGTGTATAAT 58.487 37.037 0.00 0.00 0.00 1.28
84 85 9.145442 GAGTACTTAGGAAGGGAGTGTATAATT 57.855 37.037 0.00 0.00 0.00 1.40
85 86 8.925338 AGTACTTAGGAAGGGAGTGTATAATTG 58.075 37.037 0.00 0.00 0.00 2.32
86 87 7.989947 ACTTAGGAAGGGAGTGTATAATTGA 57.010 36.000 0.00 0.00 0.00 2.57
87 88 8.024145 ACTTAGGAAGGGAGTGTATAATTGAG 57.976 38.462 0.00 0.00 0.00 3.02
88 89 7.844779 ACTTAGGAAGGGAGTGTATAATTGAGA 59.155 37.037 0.00 0.00 0.00 3.27
89 90 6.739331 AGGAAGGGAGTGTATAATTGAGAG 57.261 41.667 0.00 0.00 0.00 3.20
90 91 5.604650 AGGAAGGGAGTGTATAATTGAGAGG 59.395 44.000 0.00 0.00 0.00 3.69
91 92 5.221742 GGAAGGGAGTGTATAATTGAGAGGG 60.222 48.000 0.00 0.00 0.00 4.30
92 93 5.157770 AGGGAGTGTATAATTGAGAGGGA 57.842 43.478 0.00 0.00 0.00 4.20
93 94 4.902448 AGGGAGTGTATAATTGAGAGGGAC 59.098 45.833 0.00 0.00 0.00 4.46
94 95 4.262079 GGGAGTGTATAATTGAGAGGGACG 60.262 50.000 0.00 0.00 0.00 4.79
95 96 4.262079 GGAGTGTATAATTGAGAGGGACGG 60.262 50.000 0.00 0.00 0.00 4.79
96 97 4.543689 AGTGTATAATTGAGAGGGACGGA 58.456 43.478 0.00 0.00 0.00 4.69
97 98 4.585162 AGTGTATAATTGAGAGGGACGGAG 59.415 45.833 0.00 0.00 0.00 4.63
98 99 4.583489 GTGTATAATTGAGAGGGACGGAGA 59.417 45.833 0.00 0.00 0.00 3.71
99 100 4.827835 TGTATAATTGAGAGGGACGGAGAG 59.172 45.833 0.00 0.00 0.00 3.20
100 101 2.534042 AATTGAGAGGGACGGAGAGA 57.466 50.000 0.00 0.00 0.00 3.10
101 102 2.765689 ATTGAGAGGGACGGAGAGAT 57.234 50.000 0.00 0.00 0.00 2.75
102 103 2.534042 TTGAGAGGGACGGAGAGATT 57.466 50.000 0.00 0.00 0.00 2.40
103 104 3.664551 TTGAGAGGGACGGAGAGATTA 57.335 47.619 0.00 0.00 0.00 1.75
104 105 3.216187 TGAGAGGGACGGAGAGATTAG 57.784 52.381 0.00 0.00 0.00 1.73
105 106 2.778270 TGAGAGGGACGGAGAGATTAGA 59.222 50.000 0.00 0.00 0.00 2.10
106 107 3.181449 TGAGAGGGACGGAGAGATTAGAG 60.181 52.174 0.00 0.00 0.00 2.43
107 108 1.883926 GAGGGACGGAGAGATTAGAGC 59.116 57.143 0.00 0.00 0.00 4.09
108 109 1.215673 AGGGACGGAGAGATTAGAGCA 59.784 52.381 0.00 0.00 0.00 4.26
109 110 1.338655 GGGACGGAGAGATTAGAGCAC 59.661 57.143 0.00 0.00 0.00 4.40
110 111 1.002251 GGACGGAGAGATTAGAGCACG 60.002 57.143 0.00 0.00 0.00 5.34
111 112 1.671845 GACGGAGAGATTAGAGCACGT 59.328 52.381 0.00 0.00 35.89 4.49
112 113 2.093106 ACGGAGAGATTAGAGCACGTT 58.907 47.619 0.00 0.00 0.00 3.99
113 114 2.492484 ACGGAGAGATTAGAGCACGTTT 59.508 45.455 0.00 0.00 0.00 3.60
114 115 2.854777 CGGAGAGATTAGAGCACGTTTG 59.145 50.000 0.00 0.00 0.00 2.93
115 116 3.190874 GGAGAGATTAGAGCACGTTTGG 58.809 50.000 0.00 0.00 0.00 3.28
116 117 3.368531 GGAGAGATTAGAGCACGTTTGGT 60.369 47.826 0.00 0.00 35.66 3.67
117 118 4.246458 GAGAGATTAGAGCACGTTTGGTT 58.754 43.478 0.00 0.00 32.05 3.67
118 119 4.642429 AGAGATTAGAGCACGTTTGGTTT 58.358 39.130 0.00 0.00 32.05 3.27
119 120 4.691216 AGAGATTAGAGCACGTTTGGTTTC 59.309 41.667 0.00 0.00 32.05 2.78
120 121 4.385825 AGATTAGAGCACGTTTGGTTTCA 58.614 39.130 0.00 0.00 32.05 2.69
121 122 4.819630 AGATTAGAGCACGTTTGGTTTCAA 59.180 37.500 0.00 0.00 32.05 2.69
122 123 5.473504 AGATTAGAGCACGTTTGGTTTCAAT 59.526 36.000 0.00 0.00 32.05 2.57
123 124 6.653320 AGATTAGAGCACGTTTGGTTTCAATA 59.347 34.615 0.00 0.00 32.05 1.90
124 125 6.621316 TTAGAGCACGTTTGGTTTCAATAA 57.379 33.333 0.00 0.00 32.05 1.40
125 126 5.108385 AGAGCACGTTTGGTTTCAATAAG 57.892 39.130 0.00 0.00 32.05 1.73
126 127 4.578928 AGAGCACGTTTGGTTTCAATAAGT 59.421 37.500 0.00 0.00 32.05 2.24
127 128 4.855531 AGCACGTTTGGTTTCAATAAGTC 58.144 39.130 0.00 0.00 32.28 3.01
128 129 4.336993 AGCACGTTTGGTTTCAATAAGTCA 59.663 37.500 0.00 0.00 32.28 3.41
129 130 4.439776 GCACGTTTGGTTTCAATAAGTCAC 59.560 41.667 0.00 0.00 32.28 3.67
130 131 4.973663 CACGTTTGGTTTCAATAAGTCACC 59.026 41.667 0.00 0.00 32.28 4.02
131 132 4.885325 ACGTTTGGTTTCAATAAGTCACCT 59.115 37.500 0.00 0.00 32.28 4.00
132 133 5.212194 CGTTTGGTTTCAATAAGTCACCTG 58.788 41.667 0.00 0.00 32.28 4.00
133 134 5.008217 CGTTTGGTTTCAATAAGTCACCTGA 59.992 40.000 0.00 0.00 32.28 3.86
134 135 6.206498 GTTTGGTTTCAATAAGTCACCTGAC 58.794 40.000 0.00 0.00 37.75 3.51
135 136 6.039382 GTTTGGTTTCAATAAGTCACCTGACT 59.961 38.462 1.87 1.87 43.62 3.41
164 165 5.807344 GTCAGGTGACTTAAAAACAGTGAC 58.193 41.667 0.00 0.00 41.65 3.67
165 166 5.585047 GTCAGGTGACTTAAAAACAGTGACT 59.415 40.000 0.00 0.00 41.65 3.41
166 167 6.093633 GTCAGGTGACTTAAAAACAGTGACTT 59.906 38.462 0.00 0.00 41.65 3.01
167 168 7.279313 GTCAGGTGACTTAAAAACAGTGACTTA 59.721 37.037 0.00 0.00 41.65 2.24
168 169 7.990886 TCAGGTGACTTAAAAACAGTGACTTAT 59.009 33.333 0.00 0.00 40.21 1.73
169 170 9.268268 CAGGTGACTTAAAAACAGTGACTTATA 57.732 33.333 0.00 0.00 40.21 0.98
170 171 9.841295 AGGTGACTTAAAAACAGTGACTTATAA 57.159 29.630 0.00 0.00 37.44 0.98
188 189 8.099364 ACTTATAAGTCATGTCTGTTTGGTTG 57.901 34.615 12.50 0.00 32.86 3.77
189 190 7.719633 ACTTATAAGTCATGTCTGTTTGGTTGT 59.280 33.333 12.50 0.00 32.86 3.32
190 191 4.900635 AAGTCATGTCTGTTTGGTTGTC 57.099 40.909 0.00 0.00 0.00 3.18
191 192 3.884895 AGTCATGTCTGTTTGGTTGTCA 58.115 40.909 0.00 0.00 0.00 3.58
192 193 3.627577 AGTCATGTCTGTTTGGTTGTCAC 59.372 43.478 0.00 0.00 0.00 3.67
193 194 2.948979 TCATGTCTGTTTGGTTGTCACC 59.051 45.455 0.00 0.00 44.56 4.02
194 195 2.799126 TGTCTGTTTGGTTGTCACCT 57.201 45.000 0.00 0.00 44.61 4.00
195 196 2.364632 TGTCTGTTTGGTTGTCACCTG 58.635 47.619 0.00 0.00 44.61 4.00
196 197 2.026729 TGTCTGTTTGGTTGTCACCTGA 60.027 45.455 0.00 0.00 44.61 3.86
197 198 2.354821 GTCTGTTTGGTTGTCACCTGAC 59.645 50.000 0.00 0.00 44.61 3.51
198 199 2.238646 TCTGTTTGGTTGTCACCTGACT 59.761 45.455 6.97 0.00 44.61 3.41
199 200 3.016736 CTGTTTGGTTGTCACCTGACTT 58.983 45.455 6.97 0.00 44.61 3.01
200 201 4.080807 TCTGTTTGGTTGTCACCTGACTTA 60.081 41.667 6.97 0.00 44.61 2.24
201 202 4.787551 TGTTTGGTTGTCACCTGACTTAT 58.212 39.130 6.97 0.00 44.61 1.73
202 203 5.931294 TGTTTGGTTGTCACCTGACTTATA 58.069 37.500 6.97 0.00 44.61 0.98
203 204 6.358178 TGTTTGGTTGTCACCTGACTTATAA 58.642 36.000 6.97 0.00 44.61 0.98
204 205 6.485313 TGTTTGGTTGTCACCTGACTTATAAG 59.515 38.462 11.05 11.05 44.61 1.73
205 206 5.818678 TGGTTGTCACCTGACTTATAAGT 57.181 39.130 18.05 18.05 44.61 2.24
206 207 5.790593 TGGTTGTCACCTGACTTATAAGTC 58.209 41.667 30.61 30.61 46.58 3.01
218 219 5.148651 ACTTATAAGTCACCTGACCACAC 57.851 43.478 12.50 0.00 45.85 3.82
219 220 4.591498 ACTTATAAGTCACCTGACCACACA 59.409 41.667 12.50 0.00 45.85 3.72
220 221 5.248477 ACTTATAAGTCACCTGACCACACAT 59.752 40.000 12.50 0.00 45.85 3.21
221 222 4.640771 ATAAGTCACCTGACCACACATT 57.359 40.909 1.66 0.00 45.85 2.71
222 223 2.550830 AGTCACCTGACCACACATTC 57.449 50.000 1.66 0.00 45.85 2.67
223 224 1.072331 AGTCACCTGACCACACATTCC 59.928 52.381 1.66 0.00 45.85 3.01
224 225 1.072331 GTCACCTGACCACACATTCCT 59.928 52.381 0.00 0.00 39.07 3.36
225 226 2.301870 GTCACCTGACCACACATTCCTA 59.698 50.000 0.00 0.00 39.07 2.94
226 227 2.301870 TCACCTGACCACACATTCCTAC 59.698 50.000 0.00 0.00 0.00 3.18
227 228 1.628846 ACCTGACCACACATTCCTACC 59.371 52.381 0.00 0.00 0.00 3.18
228 229 1.909302 CCTGACCACACATTCCTACCT 59.091 52.381 0.00 0.00 0.00 3.08
229 230 2.305927 CCTGACCACACATTCCTACCTT 59.694 50.000 0.00 0.00 0.00 3.50
230 231 3.517901 CCTGACCACACATTCCTACCTTA 59.482 47.826 0.00 0.00 0.00 2.69
231 232 4.164221 CCTGACCACACATTCCTACCTTAT 59.836 45.833 0.00 0.00 0.00 1.73
232 233 5.365605 CCTGACCACACATTCCTACCTTATA 59.634 44.000 0.00 0.00 0.00 0.98
233 234 6.126883 CCTGACCACACATTCCTACCTTATAA 60.127 42.308 0.00 0.00 0.00 0.98
234 235 6.884832 TGACCACACATTCCTACCTTATAAG 58.115 40.000 5.43 5.43 0.00 1.73
235 236 6.442564 TGACCACACATTCCTACCTTATAAGT 59.557 38.462 11.50 2.82 0.00 2.24
236 237 6.885922 ACCACACATTCCTACCTTATAAGTC 58.114 40.000 11.50 0.00 0.00 3.01
237 238 6.442564 ACCACACATTCCTACCTTATAAGTCA 59.557 38.462 11.50 0.00 0.00 3.41
238 239 7.127339 ACCACACATTCCTACCTTATAAGTCAT 59.873 37.037 11.50 0.00 0.00 3.06
239 240 7.442364 CCACACATTCCTACCTTATAAGTCATG 59.558 40.741 11.50 6.52 0.00 3.07
240 241 7.987458 CACACATTCCTACCTTATAAGTCATGT 59.013 37.037 11.50 4.79 0.00 3.21
241 242 8.204836 ACACATTCCTACCTTATAAGTCATGTC 58.795 37.037 11.50 0.00 0.00 3.06
242 243 8.424918 CACATTCCTACCTTATAAGTCATGTCT 58.575 37.037 11.50 0.00 0.00 3.41
243 244 8.424918 ACATTCCTACCTTATAAGTCATGTCTG 58.575 37.037 11.50 4.49 0.00 3.51
244 245 7.973048 TTCCTACCTTATAAGTCATGTCTGT 57.027 36.000 11.50 2.47 0.00 3.41
245 246 7.973048 TCCTACCTTATAAGTCATGTCTGTT 57.027 36.000 11.50 0.00 0.00 3.16
246 247 8.375493 TCCTACCTTATAAGTCATGTCTGTTT 57.625 34.615 11.50 0.00 0.00 2.83
247 248 8.258007 TCCTACCTTATAAGTCATGTCTGTTTG 58.742 37.037 11.50 0.00 0.00 2.93
248 249 7.495934 CCTACCTTATAAGTCATGTCTGTTTGG 59.504 40.741 11.50 2.91 0.00 3.28
249 250 6.779860 ACCTTATAAGTCATGTCTGTTTGGT 58.220 36.000 11.50 0.00 0.00 3.67
250 251 7.231467 ACCTTATAAGTCATGTCTGTTTGGTT 58.769 34.615 11.50 0.00 0.00 3.67
251 252 7.174946 ACCTTATAAGTCATGTCTGTTTGGTTG 59.825 37.037 11.50 0.00 0.00 3.77
252 253 7.174946 CCTTATAAGTCATGTCTGTTTGGTTGT 59.825 37.037 11.50 0.00 0.00 3.32
253 254 4.900635 AAGTCATGTCTGTTTGGTTGTC 57.099 40.909 0.00 0.00 0.00 3.18
254 255 3.884895 AGTCATGTCTGTTTGGTTGTCA 58.115 40.909 0.00 0.00 0.00 3.58
255 256 3.627577 AGTCATGTCTGTTTGGTTGTCAC 59.372 43.478 0.00 0.00 0.00 3.67
256 257 2.948979 TCATGTCTGTTTGGTTGTCACC 59.051 45.455 0.00 0.00 44.56 4.02
257 258 2.799126 TGTCTGTTTGGTTGTCACCT 57.201 45.000 0.00 0.00 44.61 4.00
258 259 2.364632 TGTCTGTTTGGTTGTCACCTG 58.635 47.619 0.00 0.00 44.61 4.00
259 260 2.026729 TGTCTGTTTGGTTGTCACCTGA 60.027 45.455 0.00 0.00 44.61 3.86
260 261 3.214328 GTCTGTTTGGTTGTCACCTGAT 58.786 45.455 0.00 0.00 44.61 2.90
261 262 3.632145 GTCTGTTTGGTTGTCACCTGATT 59.368 43.478 0.00 0.00 44.61 2.57
262 263 4.097892 GTCTGTTTGGTTGTCACCTGATTT 59.902 41.667 0.00 0.00 44.61 2.17
263 264 4.338118 TCTGTTTGGTTGTCACCTGATTTC 59.662 41.667 0.00 0.00 44.61 2.17
264 265 4.277476 TGTTTGGTTGTCACCTGATTTCT 58.723 39.130 0.00 0.00 44.61 2.52
265 266 5.441500 TGTTTGGTTGTCACCTGATTTCTA 58.558 37.500 0.00 0.00 44.61 2.10
268 269 5.560722 TGGTTGTCACCTGATTTCTAAGA 57.439 39.130 0.00 0.00 44.61 2.10
278 279 5.071788 ACCTGATTTCTAAGACTGGTCACAA 59.928 40.000 3.51 0.00 30.92 3.33
289 290 0.404040 TGGTCACAATGGGGAGGAAC 59.596 55.000 0.00 0.00 0.00 3.62
317 318 6.874134 AGAAGTAACATCACACACTCCAATAC 59.126 38.462 0.00 0.00 0.00 1.89
329 330 6.142817 CACACTCCAATACAACTTTGCTTAC 58.857 40.000 0.00 0.00 0.00 2.34
333 334 4.214545 TCCAATACAACTTTGCTTACGTGG 59.785 41.667 0.00 0.00 0.00 4.94
337 338 1.064803 CAACTTTGCTTACGTGGCACA 59.935 47.619 19.09 9.93 39.55 4.57
383 384 1.341383 TGGTAACTACTCCCTCCGTCC 60.341 57.143 0.00 0.00 37.61 4.79
384 385 1.020437 GTAACTACTCCCTCCGTCCG 58.980 60.000 0.00 0.00 0.00 4.79
390 391 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
399 400 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
400 401 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
401 402 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
402 403 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
403 404 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
404 405 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
406 407 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
407 408 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
408 409 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
410 411 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
412 413 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
413 414 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
415 416 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
418 419 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
419 420 2.635714 TCGCGTAGTTCTAGGTCATCA 58.364 47.619 5.77 0.00 0.00 3.07
420 421 3.011818 TCGCGTAGTTCTAGGTCATCAA 58.988 45.455 5.77 0.00 0.00 2.57
421 422 3.630769 TCGCGTAGTTCTAGGTCATCAAT 59.369 43.478 5.77 0.00 0.00 2.57
422 423 4.097437 TCGCGTAGTTCTAGGTCATCAATT 59.903 41.667 5.77 0.00 0.00 2.32
423 424 4.804139 CGCGTAGTTCTAGGTCATCAATTT 59.196 41.667 0.00 0.00 0.00 1.82
425 426 6.474427 CGCGTAGTTCTAGGTCATCAATTTAA 59.526 38.462 0.00 0.00 0.00 1.52
426 427 7.306051 CGCGTAGTTCTAGGTCATCAATTTAAG 60.306 40.741 0.00 0.00 0.00 1.85
427 428 7.042658 GCGTAGTTCTAGGTCATCAATTTAAGG 60.043 40.741 0.00 0.00 0.00 2.69
428 429 8.195436 CGTAGTTCTAGGTCATCAATTTAAGGA 58.805 37.037 0.00 0.00 0.00 3.36
429 430 9.886132 GTAGTTCTAGGTCATCAATTTAAGGAA 57.114 33.333 0.00 0.00 0.00 3.36
431 432 9.981460 AGTTCTAGGTCATCAATTTAAGGAATT 57.019 29.630 0.00 0.00 38.49 2.17
474 475 9.832445 TCATGAAAACTATACCACTAGATTTCC 57.168 33.333 0.00 0.00 38.62 3.13
475 476 9.613428 CATGAAAACTATACCACTAGATTTCCA 57.387 33.333 0.00 0.00 38.62 3.53
477 478 8.598916 TGAAAACTATACCACTAGATTTCCACA 58.401 33.333 0.00 0.00 38.62 4.17
480 481 2.762535 ACCACTAGATTTCCACACGG 57.237 50.000 0.00 0.00 0.00 4.94
481 482 2.253610 ACCACTAGATTTCCACACGGA 58.746 47.619 0.00 0.00 40.60 4.69
483 484 3.198068 CCACTAGATTTCCACACGGATG 58.802 50.000 0.00 0.00 42.41 3.51
485 486 4.142026 CCACTAGATTTCCACACGGATGTA 60.142 45.833 0.00 0.00 42.41 2.29
490 491 5.313712 AGATTTCCACACGGATGTAGTTTT 58.686 37.500 0.00 0.00 42.41 2.43
492 493 6.938030 AGATTTCCACACGGATGTAGTTTTTA 59.062 34.615 0.00 0.00 42.41 1.52
493 494 6.939132 TTTCCACACGGATGTAGTTTTTAA 57.061 33.333 0.00 0.00 42.41 1.52
495 496 7.513371 TTCCACACGGATGTAGTTTTTAAAT 57.487 32.000 0.00 0.00 42.41 1.40
557 558 7.859875 AGTTAAATTATCGACCTAGAACTACGC 59.140 37.037 0.00 0.00 0.00 4.42
558 559 3.867055 TTATCGACCTAGAACTACGCG 57.133 47.619 3.53 3.53 0.00 6.01
559 560 1.945387 ATCGACCTAGAACTACGCGA 58.055 50.000 15.93 0.00 0.00 5.87
568 669 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
569 670 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
574 675 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
575 676 1.784856 CGCGAATGACTTATACACCGG 59.215 52.381 0.00 0.00 0.00 5.28
690 791 4.280789 AGATGTTCCTACCCACTATGGA 57.719 45.455 0.00 0.00 40.96 3.41
692 793 2.759355 TGTTCCTACCCACTATGGAGG 58.241 52.381 0.00 0.00 40.96 4.30
710 811 6.836714 TGGAGGTAGTAACATAGTCTAGGA 57.163 41.667 0.00 0.00 0.00 2.94
713 814 8.117956 TGGAGGTAGTAACATAGTCTAGGAAAA 58.882 37.037 0.00 0.00 0.00 2.29
758 859 2.345760 GCCCATTGTGACCAGCCTG 61.346 63.158 0.00 0.00 0.00 4.85
759 860 1.379916 CCCATTGTGACCAGCCTGA 59.620 57.895 0.00 0.00 0.00 3.86
760 861 0.962356 CCCATTGTGACCAGCCTGAC 60.962 60.000 0.00 0.00 0.00 3.51
761 862 0.962356 CCATTGTGACCAGCCTGACC 60.962 60.000 0.00 0.00 0.00 4.02
762 863 0.250858 CATTGTGACCAGCCTGACCA 60.251 55.000 0.00 0.00 0.00 4.02
763 864 0.478072 ATTGTGACCAGCCTGACCAA 59.522 50.000 0.00 0.00 0.00 3.67
764 865 0.465460 TTGTGACCAGCCTGACCAAC 60.465 55.000 0.00 0.00 0.00 3.77
765 866 1.600916 GTGACCAGCCTGACCAACC 60.601 63.158 0.00 0.00 0.00 3.77
766 867 1.770110 TGACCAGCCTGACCAACCT 60.770 57.895 0.00 0.00 0.00 3.50
767 868 1.003233 GACCAGCCTGACCAACCTC 60.003 63.158 0.00 0.00 0.00 3.85
768 869 1.768684 GACCAGCCTGACCAACCTCA 61.769 60.000 0.00 0.00 0.00 3.86
769 870 1.352622 ACCAGCCTGACCAACCTCAA 61.353 55.000 0.00 0.00 0.00 3.02
770 871 0.890996 CCAGCCTGACCAACCTCAAC 60.891 60.000 0.00 0.00 0.00 3.18
771 872 0.890996 CAGCCTGACCAACCTCAACC 60.891 60.000 0.00 0.00 0.00 3.77
772 873 1.062488 AGCCTGACCAACCTCAACCT 61.062 55.000 0.00 0.00 0.00 3.50
773 874 0.606673 GCCTGACCAACCTCAACCTC 60.607 60.000 0.00 0.00 0.00 3.85
774 875 0.764890 CCTGACCAACCTCAACCTCA 59.235 55.000 0.00 0.00 0.00 3.86
775 876 1.142870 CCTGACCAACCTCAACCTCAA 59.857 52.381 0.00 0.00 0.00 3.02
776 877 2.222027 CTGACCAACCTCAACCTCAAC 58.778 52.381 0.00 0.00 0.00 3.18
777 878 1.133915 TGACCAACCTCAACCTCAACC 60.134 52.381 0.00 0.00 0.00 3.77
778 879 1.143073 GACCAACCTCAACCTCAACCT 59.857 52.381 0.00 0.00 0.00 3.50
779 880 1.133792 ACCAACCTCAACCTCAACCTG 60.134 52.381 0.00 0.00 0.00 4.00
780 881 1.142870 CCAACCTCAACCTCAACCTGA 59.857 52.381 0.00 0.00 0.00 3.86
781 882 2.222027 CAACCTCAACCTCAACCTGAC 58.778 52.381 0.00 0.00 0.00 3.51
782 883 0.393077 ACCTCAACCTCAACCTGACG 59.607 55.000 0.00 0.00 0.00 4.35
783 884 0.951040 CCTCAACCTCAACCTGACGC 60.951 60.000 0.00 0.00 0.00 5.19
784 885 0.951040 CTCAACCTCAACCTGACGCC 60.951 60.000 0.00 0.00 0.00 5.68
785 886 1.071471 CAACCTCAACCTGACGCCT 59.929 57.895 0.00 0.00 0.00 5.52
786 887 0.535102 CAACCTCAACCTGACGCCTT 60.535 55.000 0.00 0.00 0.00 4.35
787 888 0.535102 AACCTCAACCTGACGCCTTG 60.535 55.000 0.00 0.00 0.00 3.61
788 889 2.328099 CCTCAACCTGACGCCTTGC 61.328 63.158 0.00 0.00 0.00 4.01
789 890 1.302033 CTCAACCTGACGCCTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
790 891 0.886490 CTCAACCTGACGCCTTGCTT 60.886 55.000 0.00 0.00 0.00 3.91
791 892 0.465460 TCAACCTGACGCCTTGCTTT 60.465 50.000 0.00 0.00 0.00 3.51
792 893 1.202710 TCAACCTGACGCCTTGCTTTA 60.203 47.619 0.00 0.00 0.00 1.85
793 894 1.197721 CAACCTGACGCCTTGCTTTAG 59.802 52.381 0.00 0.00 0.00 1.85
794 895 0.955919 ACCTGACGCCTTGCTTTAGC 60.956 55.000 0.00 0.00 42.50 3.09
795 896 0.674895 CCTGACGCCTTGCTTTAGCT 60.675 55.000 3.10 0.00 42.66 3.32
796 897 0.445436 CTGACGCCTTGCTTTAGCTG 59.555 55.000 0.00 0.00 42.66 4.24
797 898 0.034756 TGACGCCTTGCTTTAGCTGA 59.965 50.000 0.00 0.00 42.66 4.26
798 899 0.444260 GACGCCTTGCTTTAGCTGAC 59.556 55.000 0.00 0.00 42.66 3.51
799 900 1.291877 ACGCCTTGCTTTAGCTGACG 61.292 55.000 0.00 4.73 42.66 4.35
800 901 1.135523 GCCTTGCTTTAGCTGACGC 59.864 57.895 0.00 0.00 42.66 5.19
801 902 1.796796 CCTTGCTTTAGCTGACGCC 59.203 57.895 4.47 0.00 42.66 5.68
802 903 1.421485 CTTGCTTTAGCTGACGCCG 59.579 57.895 4.47 0.00 42.66 6.46
803 904 1.291877 CTTGCTTTAGCTGACGCCGT 61.292 55.000 4.47 0.00 42.66 5.68
804 905 0.882927 TTGCTTTAGCTGACGCCGTT 60.883 50.000 4.47 0.00 42.66 4.44
805 906 0.038067 TGCTTTAGCTGACGCCGTTA 60.038 50.000 4.47 0.00 42.66 3.18
806 907 1.287425 GCTTTAGCTGACGCCGTTAT 58.713 50.000 0.00 0.00 38.21 1.89
807 908 1.258197 GCTTTAGCTGACGCCGTTATC 59.742 52.381 0.00 0.00 38.21 1.75
808 909 1.859080 CTTTAGCTGACGCCGTTATCC 59.141 52.381 0.00 0.00 36.60 2.59
809 910 0.248743 TTAGCTGACGCCGTTATCCG 60.249 55.000 0.00 0.00 36.60 4.18
819 920 3.764658 CGTTATCCGGTTAGCCCAA 57.235 52.632 0.00 0.00 0.00 4.12
820 921 1.292992 CGTTATCCGGTTAGCCCAAC 58.707 55.000 0.00 0.00 36.32 3.77
827 928 4.107029 GTTAGCCCAACCCAACCC 57.893 61.111 0.00 0.00 0.00 4.11
828 929 1.608336 GTTAGCCCAACCCAACCCC 60.608 63.158 0.00 0.00 0.00 4.95
829 930 1.780911 TTAGCCCAACCCAACCCCT 60.781 57.895 0.00 0.00 0.00 4.79
830 931 2.087857 TTAGCCCAACCCAACCCCTG 62.088 60.000 0.00 0.00 0.00 4.45
853 954 6.390721 TGGATATTAATTAGCTGACGAGAGC 58.609 40.000 0.00 0.00 39.46 4.09
901 1002 4.954118 TGACCACGACTGGGCCCT 62.954 66.667 25.70 2.15 46.90 5.19
902 1003 4.083862 GACCACGACTGGGCCCTC 62.084 72.222 25.70 12.67 40.28 4.30
905 1006 3.402681 CACGACTGGGCCCTCCAT 61.403 66.667 25.70 5.20 46.01 3.41
919 1020 0.654683 CTCCATTGCTTAGCTGACGC 59.345 55.000 5.60 0.00 0.00 5.19
931 1035 1.883084 CTGACGCTGTTATCCGGCC 60.883 63.158 0.00 0.00 42.92 6.13
935 1039 0.466543 ACGCTGTTATCCGGCCATTA 59.533 50.000 2.24 0.00 42.92 1.90
936 1040 1.071699 ACGCTGTTATCCGGCCATTAT 59.928 47.619 2.24 0.00 42.92 1.28
937 1041 1.732259 CGCTGTTATCCGGCCATTATC 59.268 52.381 2.24 0.00 42.92 1.75
1005 1127 0.597637 GATAGGCGTCCGTGATGGTG 60.598 60.000 0.00 0.00 39.52 4.17
1006 1128 2.028125 ATAGGCGTCCGTGATGGTGG 62.028 60.000 0.00 0.00 39.52 4.61
1007 1129 4.388499 GGCGTCCGTGATGGTGGT 62.388 66.667 0.00 0.00 39.52 4.16
1008 1130 3.118454 GCGTCCGTGATGGTGGTG 61.118 66.667 0.00 0.00 39.52 4.17
1009 1131 2.434185 CGTCCGTGATGGTGGTGG 60.434 66.667 0.00 0.00 39.52 4.61
1010 1132 2.747686 GTCCGTGATGGTGGTGGT 59.252 61.111 0.00 0.00 39.52 4.16
1019 1141 1.281867 GATGGTGGTGGTGATGGAGAA 59.718 52.381 0.00 0.00 0.00 2.87
1249 1528 7.042187 CCAATCTCTGTTCTTCCAGATTAATCG 60.042 40.741 9.78 5.27 40.53 3.34
1250 1529 5.907207 TCTCTGTTCTTCCAGATTAATCGG 58.093 41.667 15.85 15.85 40.53 4.18
1252 1531 3.194861 TGTTCTTCCAGATTAATCGGCG 58.805 45.455 16.71 0.00 0.00 6.46
1255 1534 2.429250 TCTTCCAGATTAATCGGCGTCA 59.571 45.455 6.85 0.00 0.00 4.35
1257 1536 1.754803 TCCAGATTAATCGGCGTCAGT 59.245 47.619 6.85 0.00 0.00 3.41
1261 1540 4.142687 CCAGATTAATCGGCGTCAGTTTTT 60.143 41.667 6.85 0.00 0.00 1.94
1262 1541 5.022021 CAGATTAATCGGCGTCAGTTTTTC 58.978 41.667 6.85 0.00 0.00 2.29
1284 1563 6.128138 TCCAGATCGACCAATCTCTCTATA 57.872 41.667 0.00 0.00 33.68 1.31
1285 1564 6.543735 TCCAGATCGACCAATCTCTCTATAA 58.456 40.000 0.00 0.00 33.68 0.98
1286 1565 7.004691 TCCAGATCGACCAATCTCTCTATAAA 58.995 38.462 0.00 0.00 33.68 1.40
1287 1566 7.671819 TCCAGATCGACCAATCTCTCTATAAAT 59.328 37.037 0.00 0.00 33.68 1.40
1288 1567 8.310382 CCAGATCGACCAATCTCTCTATAAATT 58.690 37.037 0.00 0.00 33.68 1.82
1290 1569 8.527810 AGATCGACCAATCTCTCTATAAATTCC 58.472 37.037 0.00 0.00 29.89 3.01
1292 1571 8.018537 TCGACCAATCTCTCTATAAATTCCAA 57.981 34.615 0.00 0.00 0.00 3.53
1293 1572 7.926555 TCGACCAATCTCTCTATAAATTCCAAC 59.073 37.037 0.00 0.00 0.00 3.77
1294 1573 7.171678 CGACCAATCTCTCTATAAATTCCAACC 59.828 40.741 0.00 0.00 0.00 3.77
1295 1574 6.992715 ACCAATCTCTCTATAAATTCCAACCG 59.007 38.462 0.00 0.00 0.00 4.44
1300 1579 6.782988 TCTCTCTATAAATTCCAACCGATCCT 59.217 38.462 0.00 0.00 0.00 3.24
1380 1659 0.460987 GATCTGCAGGGTCTTCCACG 60.461 60.000 15.13 0.00 38.24 4.94
1400 1679 4.034258 CACTGCAAGCACAGCGGG 62.034 66.667 8.44 0.00 42.62 6.13
1425 1704 1.338200 CCCTGGAGGACAAGAACTTCG 60.338 57.143 0.00 0.00 38.24 3.79
1430 1709 0.321996 AGGACAAGAACTTCGCCCTC 59.678 55.000 0.00 0.00 0.00 4.30
1471 1750 3.420482 CCAGGTCCCACCCCCATC 61.420 72.222 0.00 0.00 39.75 3.51
1472 1751 3.420482 CAGGTCCCACCCCCATCC 61.420 72.222 0.00 0.00 39.75 3.51
1483 1771 0.839853 CCCCCATCCTCCCTCAGATC 60.840 65.000 0.00 0.00 0.00 2.75
1485 1773 1.190833 CCCATCCTCCCTCAGATCCG 61.191 65.000 0.00 0.00 0.00 4.18
1499 1787 1.399791 AGATCCGTCCGTACTTTCGTC 59.600 52.381 0.00 0.00 0.00 4.20
1513 1801 4.530857 CGTCATGCCGGGGAGGTC 62.531 72.222 2.18 0.00 43.70 3.85
1514 1802 4.176752 GTCATGCCGGGGAGGTCC 62.177 72.222 2.18 0.00 43.70 4.46
1524 1812 4.677151 GGAGGTCCCCCACACCCT 62.677 72.222 0.00 0.00 33.96 4.34
1529 1817 4.348495 TCCCCCACACCCTCCCTC 62.348 72.222 0.00 0.00 0.00 4.30
1552 1840 4.464947 CCTCAGATCCCCCAAAGATTTAC 58.535 47.826 0.00 0.00 0.00 2.01
1589 1877 2.794631 GCCGTTGAGAGTTGGTTTGTTG 60.795 50.000 0.00 0.00 0.00 3.33
1591 1879 3.486875 CCGTTGAGAGTTGGTTTGTTGTC 60.487 47.826 0.00 0.00 0.00 3.18
1604 2012 1.372683 GTTGTCTCCTCTGCTGCCA 59.627 57.895 0.00 0.00 0.00 4.92
1685 2093 1.592400 TTCTACGGCGTCAGGGACAG 61.592 60.000 19.21 6.60 32.09 3.51
1690 2098 2.105128 GCGTCAGGGACAGGATCG 59.895 66.667 0.00 0.00 32.09 3.69
1791 2199 2.508663 GTCTACGGCGGCCTTGTC 60.509 66.667 18.34 1.20 0.00 3.18
1806 2214 4.455877 GGCCTTGTCTACATGGTATAATGC 59.544 45.833 14.45 0.00 41.65 3.56
1815 2223 0.817634 TGGTATAATGCGTGGCAGCC 60.818 55.000 3.66 3.66 43.65 4.85
1816 2224 0.817634 GGTATAATGCGTGGCAGCCA 60.818 55.000 11.22 11.22 43.65 4.75
1850 2258 1.388547 TGTTCACCTTCACCTGTTGC 58.611 50.000 0.00 0.00 0.00 4.17
1870 2278 5.266733 TGCTCTGTTTTGCTGAATCTTTT 57.733 34.783 0.00 0.00 0.00 2.27
1871 2279 5.045215 TGCTCTGTTTTGCTGAATCTTTTG 58.955 37.500 0.00 0.00 0.00 2.44
1872 2280 5.163530 TGCTCTGTTTTGCTGAATCTTTTGA 60.164 36.000 0.00 0.00 0.00 2.69
1873 2281 5.924825 GCTCTGTTTTGCTGAATCTTTTGAT 59.075 36.000 0.00 0.00 41.73 2.57
1925 2333 2.307098 GGAGCATATGGATAAGCTGGGT 59.693 50.000 4.56 0.00 37.43 4.51
2020 2428 1.001378 CTCGGGCAAGGTTTGTTCAAG 60.001 52.381 0.00 0.00 0.00 3.02
2025 2433 2.544486 GGCAAGGTTTGTTCAAGCTGAG 60.544 50.000 0.00 0.00 42.70 3.35
2028 2436 4.747810 CAAGGTTTGTTCAAGCTGAGTTT 58.252 39.130 0.00 0.00 42.70 2.66
2033 2441 7.203218 AGGTTTGTTCAAGCTGAGTTTAAATC 58.797 34.615 0.00 0.00 41.89 2.17
2034 2442 6.978080 GGTTTGTTCAAGCTGAGTTTAAATCA 59.022 34.615 0.00 0.00 0.00 2.57
2037 2445 7.275888 TGTTCAAGCTGAGTTTAAATCACAT 57.724 32.000 0.00 0.00 0.00 3.21
2038 2446 7.362662 TGTTCAAGCTGAGTTTAAATCACATC 58.637 34.615 0.00 0.00 0.00 3.06
2039 2447 6.169419 TCAAGCTGAGTTTAAATCACATCG 57.831 37.500 0.00 0.00 0.00 3.84
2040 2448 5.700832 TCAAGCTGAGTTTAAATCACATCGT 59.299 36.000 0.00 0.00 0.00 3.73
2041 2449 6.204688 TCAAGCTGAGTTTAAATCACATCGTT 59.795 34.615 0.00 0.00 0.00 3.85
2090 2498 4.572985 TTCTGCATTTGAACCTTGTCTG 57.427 40.909 0.00 0.00 0.00 3.51
2135 2543 3.423154 CAAAGGTGGCTCGACGGC 61.423 66.667 0.00 0.00 38.97 5.68
2174 2582 0.729116 CCATGAAAGAAGTCGCGCAT 59.271 50.000 8.75 0.00 0.00 4.73
2217 2625 4.475028 TGCGTTGTTGCAGAAGAATTATG 58.525 39.130 0.00 0.00 41.00 1.90
2294 2702 1.738350 CGACGAGGCTTAGAGAACAGA 59.262 52.381 0.00 0.00 0.00 3.41
2295 2703 2.161808 CGACGAGGCTTAGAGAACAGAA 59.838 50.000 0.00 0.00 0.00 3.02
2299 2707 6.282199 ACGAGGCTTAGAGAACAGAATTTA 57.718 37.500 0.00 0.00 0.00 1.40
2300 2708 6.334202 ACGAGGCTTAGAGAACAGAATTTAG 58.666 40.000 0.00 0.00 0.00 1.85
2301 2709 5.233263 CGAGGCTTAGAGAACAGAATTTAGC 59.767 44.000 0.00 0.00 0.00 3.09
2302 2710 5.432645 AGGCTTAGAGAACAGAATTTAGCC 58.567 41.667 0.00 0.00 44.54 3.93
2303 2711 4.271291 GGCTTAGAGAACAGAATTTAGCCG 59.729 45.833 0.00 0.00 36.64 5.52
2304 2712 5.109903 GCTTAGAGAACAGAATTTAGCCGA 58.890 41.667 0.00 0.00 0.00 5.54
2306 2714 3.512680 AGAGAACAGAATTTAGCCGACG 58.487 45.455 0.00 0.00 0.00 5.12
2313 2734 3.863424 CAGAATTTAGCCGACGTGTGTAT 59.137 43.478 0.00 0.00 0.00 2.29
2317 2738 3.300852 TTAGCCGACGTGTGTATGAAA 57.699 42.857 0.00 0.00 0.00 2.69
2325 2746 6.410845 CCGACGTGTGTATGAAATTTATCTG 58.589 40.000 0.00 0.00 0.00 2.90
2336 2757 6.426980 TGAAATTTATCTGTGCAGCAGTAG 57.573 37.500 13.59 0.00 45.23 2.57
2343 2764 2.762887 TCTGTGCAGCAGTAGAAGCTAT 59.237 45.455 13.59 0.00 45.23 2.97
2344 2765 3.196469 TCTGTGCAGCAGTAGAAGCTATT 59.804 43.478 13.59 0.00 45.23 1.73
2345 2766 3.525537 TGTGCAGCAGTAGAAGCTATTC 58.474 45.455 0.00 0.00 41.14 1.75
2346 2767 2.869192 GTGCAGCAGTAGAAGCTATTCC 59.131 50.000 0.00 0.00 41.14 3.01
2347 2768 2.501316 TGCAGCAGTAGAAGCTATTCCA 59.499 45.455 0.00 0.00 41.14 3.53
2365 2786 2.624364 TCCAGTTAACTAGTCGTGCACA 59.376 45.455 18.64 0.81 0.00 4.57
2506 2927 2.362369 CCTCTGCCCAGACGGTGAT 61.362 63.158 0.00 0.00 33.22 3.06
2509 2930 4.758251 TGCCCAGACGGTGATGCG 62.758 66.667 0.00 0.00 0.00 4.73
2514 2935 3.695606 AGACGGTGATGCGCAGGT 61.696 61.111 18.32 8.42 0.00 4.00
2515 2936 3.490759 GACGGTGATGCGCAGGTG 61.491 66.667 18.32 6.29 0.00 4.00
2607 3028 0.185901 ACAAAGGAGGAGCTGGCAAA 59.814 50.000 0.00 0.00 0.00 3.68
2620 3041 4.338879 AGCTGGCAAACTTATCAAGTCAT 58.661 39.130 0.00 0.00 41.91 3.06
2663 3084 7.207383 TCATATATTCAAATATACGCCCTCCG 58.793 38.462 4.92 0.00 36.85 4.63
2676 3097 0.828677 CCCTCCGTCCCGAATTAGTT 59.171 55.000 0.00 0.00 0.00 2.24
2683 3104 4.220382 TCCGTCCCGAATTAGTTGTCTTAA 59.780 41.667 0.00 0.00 0.00 1.85
2687 3108 6.959311 CGTCCCGAATTAGTTGTCTTAAATTG 59.041 38.462 0.00 0.00 0.00 2.32
2688 3109 7.148540 CGTCCCGAATTAGTTGTCTTAAATTGA 60.149 37.037 0.00 0.00 0.00 2.57
2689 3110 7.961283 GTCCCGAATTAGTTGTCTTAAATTGAC 59.039 37.037 0.00 0.00 35.21 3.18
2714 3199 5.044993 ACAACTAATTTGGGACGGGGTAATA 60.045 40.000 0.00 0.00 39.84 0.98
2717 3202 3.851458 ATTTGGGACGGGGTAATAGAC 57.149 47.619 0.00 0.00 0.00 2.59
2799 3286 3.026694 TCGAGTCATCACAGGATCACAT 58.973 45.455 0.00 0.00 24.85 3.21
2848 3489 2.031258 TGTGTGTGTGGTGTAAGTGG 57.969 50.000 0.00 0.00 0.00 4.00
2893 3534 6.483385 TGATGCATGCAAAATAAAAGGTTG 57.517 33.333 26.68 0.00 0.00 3.77
2925 3566 3.558829 CCGATGATCTCATTGTCAGTTGG 59.441 47.826 6.66 0.00 36.57 3.77
2968 3609 0.256752 TCCATTGCTGGAGGTGGATG 59.743 55.000 2.11 0.00 46.95 3.51
2999 3644 2.580276 GCTCAGCTCAGCTCTGCT 59.420 61.111 0.67 4.30 36.40 4.24
3000 3645 1.078988 GCTCAGCTCAGCTCTGCTT 60.079 57.895 0.67 0.00 36.40 3.91
3001 3646 0.175302 GCTCAGCTCAGCTCTGCTTA 59.825 55.000 0.67 0.01 36.40 3.09
3003 3648 0.172127 TCAGCTCAGCTCTGCTTACG 59.828 55.000 0.00 0.00 36.40 3.18
3004 3649 0.805322 CAGCTCAGCTCTGCTTACGG 60.805 60.000 0.00 0.00 36.40 4.02
3005 3650 1.216710 GCTCAGCTCTGCTTACGGT 59.783 57.895 0.00 0.00 36.40 4.83
3009 3654 2.187163 GCTCTGCTTACGGTCCCC 59.813 66.667 0.00 0.00 0.00 4.81
3043 3688 3.365265 CCAGCGCCAGGGACAAAC 61.365 66.667 2.29 0.00 0.00 2.93
3051 3696 3.647771 AGGGACAAACCGGGCCTC 61.648 66.667 6.32 0.00 40.11 4.70
3052 3697 3.647771 GGGACAAACCGGGCCTCT 61.648 66.667 6.32 0.00 40.11 3.69
3054 3699 2.593956 GGACAAACCGGGCCTCTCT 61.594 63.158 6.32 0.00 0.00 3.10
3055 3700 1.079057 GACAAACCGGGCCTCTCTC 60.079 63.158 6.32 0.00 0.00 3.20
3057 3702 1.374947 CAAACCGGGCCTCTCTCAA 59.625 57.895 6.32 0.00 0.00 3.02
3058 3703 0.955919 CAAACCGGGCCTCTCTCAAC 60.956 60.000 6.32 0.00 0.00 3.18
3059 3704 2.450479 AAACCGGGCCTCTCTCAACG 62.450 60.000 6.32 0.00 0.00 4.10
3060 3705 4.821589 CCGGGCCTCTCTCAACGC 62.822 72.222 0.84 0.00 0.00 4.84
3062 3707 3.760035 GGGCCTCTCTCAACGCGA 61.760 66.667 15.93 0.00 0.00 5.87
3063 3708 2.507324 GGCCTCTCTCAACGCGAC 60.507 66.667 15.93 0.00 0.00 5.19
3064 3709 2.507324 GCCTCTCTCAACGCGACC 60.507 66.667 15.93 0.00 0.00 4.79
3117 5465 3.749064 GAGTCGCTGGCACGGAGA 61.749 66.667 9.05 0.00 42.33 3.71
3150 5498 2.436646 CCAAGCCCACCACGCTAG 60.437 66.667 0.00 0.00 34.84 3.42
3163 5511 2.351244 CGCTAGTCCCACTCCAGCA 61.351 63.158 0.00 0.00 31.06 4.41
3175 5523 2.249413 CTCCAGCATCTTCCCACGCT 62.249 60.000 0.00 0.00 34.29 5.07
3460 5809 3.188667 GCCGGTAAAAAGAAAGACTCCAG 59.811 47.826 1.90 0.00 0.00 3.86
3487 5838 4.191544 GCTGCTCCTGTAAATGATGTACA 58.808 43.478 0.00 0.00 0.00 2.90
3497 5848 8.562892 CCTGTAAATGATGTACATGGAAGATTC 58.437 37.037 14.43 0.00 39.39 2.52
3523 5874 3.807071 GCTTAGAGCTCTGTTCTATTGGC 59.193 47.826 26.78 11.90 38.45 4.52
3559 5910 6.444704 TCTGGAGTGGAAGGAGTATTAGATT 58.555 40.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.196463 TCGTCGTGGTTTTAGCTCAAAA 58.804 40.909 0.00 0.00 33.66 2.44
20 21 2.798283 CTCGTCGTGGTTTTAGCTCAAA 59.202 45.455 0.00 0.00 0.00 2.69
21 22 2.223876 ACTCGTCGTGGTTTTAGCTCAA 60.224 45.455 0.00 0.00 0.00 3.02
22 23 1.338973 ACTCGTCGTGGTTTTAGCTCA 59.661 47.619 0.00 0.00 0.00 4.26
23 24 2.061740 ACTCGTCGTGGTTTTAGCTC 57.938 50.000 0.00 0.00 0.00 4.09
24 25 3.648339 TTACTCGTCGTGGTTTTAGCT 57.352 42.857 0.00 0.00 0.00 3.32
25 26 4.916099 AATTACTCGTCGTGGTTTTAGC 57.084 40.909 0.00 0.00 0.00 3.09
26 27 6.456447 TCAAATTACTCGTCGTGGTTTTAG 57.544 37.500 0.00 0.00 0.00 1.85
27 28 6.841443 TTCAAATTACTCGTCGTGGTTTTA 57.159 33.333 0.00 0.00 0.00 1.52
28 29 5.738118 TTCAAATTACTCGTCGTGGTTTT 57.262 34.783 0.00 0.00 0.00 2.43
29 30 5.738118 TTTCAAATTACTCGTCGTGGTTT 57.262 34.783 0.00 0.00 0.00 3.27
30 31 5.467399 TCATTTCAAATTACTCGTCGTGGTT 59.533 36.000 0.00 0.00 0.00 3.67
31 32 4.992319 TCATTTCAAATTACTCGTCGTGGT 59.008 37.500 0.00 0.00 0.00 4.16
32 33 5.524511 TCATTTCAAATTACTCGTCGTGG 57.475 39.130 0.00 0.00 0.00 4.94
33 34 7.796660 TCTTTTCATTTCAAATTACTCGTCGTG 59.203 33.333 0.00 0.00 0.00 4.35
34 35 7.857569 TCTTTTCATTTCAAATTACTCGTCGT 58.142 30.769 0.00 0.00 0.00 4.34
35 36 8.009974 ACTCTTTTCATTTCAAATTACTCGTCG 58.990 33.333 0.00 0.00 0.00 5.12
46 47 9.284968 CCTTCCTAAGTACTCTTTTCATTTCAA 57.715 33.333 0.00 0.00 35.36 2.69
47 48 7.883311 CCCTTCCTAAGTACTCTTTTCATTTCA 59.117 37.037 0.00 0.00 35.36 2.69
48 49 8.101419 TCCCTTCCTAAGTACTCTTTTCATTTC 58.899 37.037 0.00 0.00 35.36 2.17
49 50 7.985589 TCCCTTCCTAAGTACTCTTTTCATTT 58.014 34.615 0.00 0.00 35.36 2.32
50 51 7.237887 ACTCCCTTCCTAAGTACTCTTTTCATT 59.762 37.037 0.00 0.00 35.36 2.57
51 52 6.731448 ACTCCCTTCCTAAGTACTCTTTTCAT 59.269 38.462 0.00 0.00 35.36 2.57
52 53 6.014499 CACTCCCTTCCTAAGTACTCTTTTCA 60.014 42.308 0.00 0.00 35.36 2.69
53 54 6.014413 ACACTCCCTTCCTAAGTACTCTTTTC 60.014 42.308 0.00 0.00 35.36 2.29
54 55 5.845065 ACACTCCCTTCCTAAGTACTCTTTT 59.155 40.000 0.00 0.00 35.36 2.27
55 56 5.404395 ACACTCCCTTCCTAAGTACTCTTT 58.596 41.667 0.00 0.00 35.36 2.52
56 57 5.013258 ACACTCCCTTCCTAAGTACTCTT 57.987 43.478 0.00 0.00 37.65 2.85
57 58 4.678538 ACACTCCCTTCCTAAGTACTCT 57.321 45.455 0.00 0.00 0.00 3.24
58 59 8.709272 ATTATACACTCCCTTCCTAAGTACTC 57.291 38.462 0.00 0.00 0.00 2.59
59 60 8.925338 CAATTATACACTCCCTTCCTAAGTACT 58.075 37.037 0.00 0.00 0.00 2.73
60 61 8.921205 TCAATTATACACTCCCTTCCTAAGTAC 58.079 37.037 0.00 0.00 0.00 2.73
61 62 9.144298 CTCAATTATACACTCCCTTCCTAAGTA 57.856 37.037 0.00 0.00 0.00 2.24
62 63 7.844779 TCTCAATTATACACTCCCTTCCTAAGT 59.155 37.037 0.00 0.00 0.00 2.24
63 64 8.251383 TCTCAATTATACACTCCCTTCCTAAG 57.749 38.462 0.00 0.00 0.00 2.18
64 65 7.290248 CCTCTCAATTATACACTCCCTTCCTAA 59.710 40.741 0.00 0.00 0.00 2.69
65 66 6.782988 CCTCTCAATTATACACTCCCTTCCTA 59.217 42.308 0.00 0.00 0.00 2.94
66 67 5.604650 CCTCTCAATTATACACTCCCTTCCT 59.395 44.000 0.00 0.00 0.00 3.36
67 68 5.221742 CCCTCTCAATTATACACTCCCTTCC 60.222 48.000 0.00 0.00 0.00 3.46
68 69 5.602978 TCCCTCTCAATTATACACTCCCTTC 59.397 44.000 0.00 0.00 0.00 3.46
69 70 5.367060 GTCCCTCTCAATTATACACTCCCTT 59.633 44.000 0.00 0.00 0.00 3.95
70 71 4.902448 GTCCCTCTCAATTATACACTCCCT 59.098 45.833 0.00 0.00 0.00 4.20
71 72 4.262079 CGTCCCTCTCAATTATACACTCCC 60.262 50.000 0.00 0.00 0.00 4.30
72 73 4.262079 CCGTCCCTCTCAATTATACACTCC 60.262 50.000 0.00 0.00 0.00 3.85
73 74 4.583489 TCCGTCCCTCTCAATTATACACTC 59.417 45.833 0.00 0.00 0.00 3.51
74 75 4.543689 TCCGTCCCTCTCAATTATACACT 58.456 43.478 0.00 0.00 0.00 3.55
75 76 4.583489 TCTCCGTCCCTCTCAATTATACAC 59.417 45.833 0.00 0.00 0.00 2.90
76 77 4.800023 TCTCCGTCCCTCTCAATTATACA 58.200 43.478 0.00 0.00 0.00 2.29
77 78 5.071370 TCTCTCCGTCCCTCTCAATTATAC 58.929 45.833 0.00 0.00 0.00 1.47
78 79 5.320488 TCTCTCCGTCCCTCTCAATTATA 57.680 43.478 0.00 0.00 0.00 0.98
79 80 4.186077 TCTCTCCGTCCCTCTCAATTAT 57.814 45.455 0.00 0.00 0.00 1.28
80 81 3.664551 TCTCTCCGTCCCTCTCAATTA 57.335 47.619 0.00 0.00 0.00 1.40
81 82 2.534042 TCTCTCCGTCCCTCTCAATT 57.466 50.000 0.00 0.00 0.00 2.32
82 83 2.765689 ATCTCTCCGTCCCTCTCAAT 57.234 50.000 0.00 0.00 0.00 2.57
83 84 2.534042 AATCTCTCCGTCCCTCTCAA 57.466 50.000 0.00 0.00 0.00 3.02
84 85 2.778270 TCTAATCTCTCCGTCCCTCTCA 59.222 50.000 0.00 0.00 0.00 3.27
85 86 3.408634 CTCTAATCTCTCCGTCCCTCTC 58.591 54.545 0.00 0.00 0.00 3.20
86 87 2.488347 GCTCTAATCTCTCCGTCCCTCT 60.488 54.545 0.00 0.00 0.00 3.69
87 88 1.883926 GCTCTAATCTCTCCGTCCCTC 59.116 57.143 0.00 0.00 0.00 4.30
88 89 1.215673 TGCTCTAATCTCTCCGTCCCT 59.784 52.381 0.00 0.00 0.00 4.20
89 90 1.338655 GTGCTCTAATCTCTCCGTCCC 59.661 57.143 0.00 0.00 0.00 4.46
90 91 1.002251 CGTGCTCTAATCTCTCCGTCC 60.002 57.143 0.00 0.00 0.00 4.79
91 92 1.671845 ACGTGCTCTAATCTCTCCGTC 59.328 52.381 0.00 0.00 0.00 4.79
92 93 1.752683 ACGTGCTCTAATCTCTCCGT 58.247 50.000 0.00 0.00 0.00 4.69
93 94 2.853731 AACGTGCTCTAATCTCTCCG 57.146 50.000 0.00 0.00 0.00 4.63
94 95 3.190874 CCAAACGTGCTCTAATCTCTCC 58.809 50.000 0.00 0.00 0.00 3.71
95 96 3.851098 ACCAAACGTGCTCTAATCTCTC 58.149 45.455 0.00 0.00 0.00 3.20
96 97 3.963428 ACCAAACGTGCTCTAATCTCT 57.037 42.857 0.00 0.00 0.00 3.10
97 98 4.451096 TGAAACCAAACGTGCTCTAATCTC 59.549 41.667 0.00 0.00 0.00 2.75
98 99 4.385825 TGAAACCAAACGTGCTCTAATCT 58.614 39.130 0.00 0.00 0.00 2.40
99 100 4.742438 TGAAACCAAACGTGCTCTAATC 57.258 40.909 0.00 0.00 0.00 1.75
100 101 5.705609 ATTGAAACCAAACGTGCTCTAAT 57.294 34.783 0.00 0.00 0.00 1.73
101 102 6.261381 ACTTATTGAAACCAAACGTGCTCTAA 59.739 34.615 0.00 0.00 0.00 2.10
102 103 5.761234 ACTTATTGAAACCAAACGTGCTCTA 59.239 36.000 0.00 0.00 0.00 2.43
103 104 4.578928 ACTTATTGAAACCAAACGTGCTCT 59.421 37.500 0.00 0.00 0.00 4.09
104 105 4.855531 ACTTATTGAAACCAAACGTGCTC 58.144 39.130 0.00 0.00 0.00 4.26
105 106 4.336993 TGACTTATTGAAACCAAACGTGCT 59.663 37.500 0.00 0.00 0.00 4.40
106 107 4.439776 GTGACTTATTGAAACCAAACGTGC 59.560 41.667 0.00 0.00 0.00 5.34
107 108 4.973663 GGTGACTTATTGAAACCAAACGTG 59.026 41.667 0.00 0.00 0.00 4.49
108 109 4.885325 AGGTGACTTATTGAAACCAAACGT 59.115 37.500 0.00 0.00 37.44 3.99
109 110 5.008217 TCAGGTGACTTATTGAAACCAAACG 59.992 40.000 0.00 0.00 40.21 3.60
110 111 6.206498 GTCAGGTGACTTATTGAAACCAAAC 58.794 40.000 2.72 0.00 41.65 2.93
111 112 6.385649 GTCAGGTGACTTATTGAAACCAAA 57.614 37.500 2.72 0.00 41.65 3.28
141 142 5.585047 AGTCACTGTTTTTAAGTCACCTGAC 59.415 40.000 0.00 0.00 45.08 3.51
142 143 5.741011 AGTCACTGTTTTTAAGTCACCTGA 58.259 37.500 0.00 0.00 0.00 3.86
143 144 6.436843 AAGTCACTGTTTTTAAGTCACCTG 57.563 37.500 0.00 0.00 0.00 4.00
144 145 9.841295 TTATAAGTCACTGTTTTTAAGTCACCT 57.159 29.630 0.00 0.00 0.00 4.00
163 164 7.719633 ACAACCAAACAGACATGACTTATAAGT 59.280 33.333 18.05 18.05 43.16 2.24
164 165 8.099364 ACAACCAAACAGACATGACTTATAAG 57.901 34.615 11.05 11.05 0.00 1.73
165 166 7.717436 TGACAACCAAACAGACATGACTTATAA 59.283 33.333 0.00 0.00 0.00 0.98
166 167 7.172532 GTGACAACCAAACAGACATGACTTATA 59.827 37.037 0.00 0.00 0.00 0.98
167 168 6.017109 GTGACAACCAAACAGACATGACTTAT 60.017 38.462 0.00 0.00 0.00 1.73
168 169 5.295787 GTGACAACCAAACAGACATGACTTA 59.704 40.000 0.00 0.00 0.00 2.24
169 170 4.096382 GTGACAACCAAACAGACATGACTT 59.904 41.667 0.00 0.00 0.00 3.01
170 171 3.627577 GTGACAACCAAACAGACATGACT 59.372 43.478 0.00 0.00 0.00 3.41
171 172 3.243068 GGTGACAACCAAACAGACATGAC 60.243 47.826 0.00 0.00 46.75 3.06
172 173 2.948979 GGTGACAACCAAACAGACATGA 59.051 45.455 0.00 0.00 46.75 3.07
173 174 3.354089 GGTGACAACCAAACAGACATG 57.646 47.619 0.00 0.00 46.75 3.21
196 197 4.591498 TGTGTGGTCAGGTGACTTATAAGT 59.409 41.667 18.05 18.05 44.20 2.24
197 198 5.147330 TGTGTGGTCAGGTGACTTATAAG 57.853 43.478 11.05 11.05 44.20 1.73
198 199 5.755409 ATGTGTGGTCAGGTGACTTATAA 57.245 39.130 9.90 0.00 44.20 0.98
199 200 5.338056 GGAATGTGTGGTCAGGTGACTTATA 60.338 44.000 9.90 0.00 44.20 0.98
200 201 4.565652 GGAATGTGTGGTCAGGTGACTTAT 60.566 45.833 9.90 0.00 44.20 1.73
201 202 3.244422 GGAATGTGTGGTCAGGTGACTTA 60.244 47.826 9.90 0.00 44.20 2.24
202 203 2.487265 GGAATGTGTGGTCAGGTGACTT 60.487 50.000 9.90 0.00 44.20 3.01
203 204 1.072331 GGAATGTGTGGTCAGGTGACT 59.928 52.381 9.90 0.00 44.20 3.41
204 205 1.072331 AGGAATGTGTGGTCAGGTGAC 59.928 52.381 1.17 1.17 44.04 3.67
205 206 1.434188 AGGAATGTGTGGTCAGGTGA 58.566 50.000 0.00 0.00 0.00 4.02
206 207 2.615493 GGTAGGAATGTGTGGTCAGGTG 60.615 54.545 0.00 0.00 0.00 4.00
207 208 1.628846 GGTAGGAATGTGTGGTCAGGT 59.371 52.381 0.00 0.00 0.00 4.00
208 209 1.909302 AGGTAGGAATGTGTGGTCAGG 59.091 52.381 0.00 0.00 0.00 3.86
209 210 3.703001 AAGGTAGGAATGTGTGGTCAG 57.297 47.619 0.00 0.00 0.00 3.51
210 211 6.442564 ACTTATAAGGTAGGAATGTGTGGTCA 59.557 38.462 16.73 0.00 0.00 4.02
211 212 6.885922 ACTTATAAGGTAGGAATGTGTGGTC 58.114 40.000 16.73 0.00 0.00 4.02
212 213 6.442564 TGACTTATAAGGTAGGAATGTGTGGT 59.557 38.462 16.73 0.00 0.00 4.16
213 214 6.884832 TGACTTATAAGGTAGGAATGTGTGG 58.115 40.000 16.73 0.00 0.00 4.17
214 215 7.987458 ACATGACTTATAAGGTAGGAATGTGTG 59.013 37.037 16.73 1.42 0.00 3.82
215 216 8.090788 ACATGACTTATAAGGTAGGAATGTGT 57.909 34.615 16.73 5.62 0.00 3.72
216 217 8.424918 AGACATGACTTATAAGGTAGGAATGTG 58.575 37.037 16.73 5.10 0.00 3.21
217 218 8.424918 CAGACATGACTTATAAGGTAGGAATGT 58.575 37.037 16.73 14.22 0.00 2.71
218 219 8.424918 ACAGACATGACTTATAAGGTAGGAATG 58.575 37.037 16.73 11.72 0.00 2.67
219 220 8.554490 ACAGACATGACTTATAAGGTAGGAAT 57.446 34.615 16.73 0.00 0.00 3.01
220 221 7.973048 ACAGACATGACTTATAAGGTAGGAA 57.027 36.000 16.73 0.00 0.00 3.36
221 222 7.973048 AACAGACATGACTTATAAGGTAGGA 57.027 36.000 16.73 0.00 0.00 2.94
222 223 7.495934 CCAAACAGACATGACTTATAAGGTAGG 59.504 40.741 16.73 8.95 0.00 3.18
223 224 8.041323 ACCAAACAGACATGACTTATAAGGTAG 58.959 37.037 16.73 6.25 0.00 3.18
224 225 7.913789 ACCAAACAGACATGACTTATAAGGTA 58.086 34.615 16.73 5.52 0.00 3.08
225 226 6.779860 ACCAAACAGACATGACTTATAAGGT 58.220 36.000 16.73 4.76 0.00 3.50
226 227 7.174946 ACAACCAAACAGACATGACTTATAAGG 59.825 37.037 16.73 1.53 0.00 2.69
227 228 8.099364 ACAACCAAACAGACATGACTTATAAG 57.901 34.615 11.05 11.05 0.00 1.73
228 229 7.717436 TGACAACCAAACAGACATGACTTATAA 59.283 33.333 0.00 0.00 0.00 0.98
229 230 7.172532 GTGACAACCAAACAGACATGACTTATA 59.827 37.037 0.00 0.00 0.00 0.98
230 231 6.017109 GTGACAACCAAACAGACATGACTTAT 60.017 38.462 0.00 0.00 0.00 1.73
231 232 5.295787 GTGACAACCAAACAGACATGACTTA 59.704 40.000 0.00 0.00 0.00 2.24
232 233 4.096382 GTGACAACCAAACAGACATGACTT 59.904 41.667 0.00 0.00 0.00 3.01
233 234 3.627577 GTGACAACCAAACAGACATGACT 59.372 43.478 0.00 0.00 0.00 3.41
234 235 3.243068 GGTGACAACCAAACAGACATGAC 60.243 47.826 0.00 0.00 46.75 3.06
235 236 2.948979 GGTGACAACCAAACAGACATGA 59.051 45.455 0.00 0.00 46.75 3.07
236 237 3.354089 GGTGACAACCAAACAGACATG 57.646 47.619 0.00 0.00 46.75 3.21
248 249 5.409826 CCAGTCTTAGAAATCAGGTGACAAC 59.590 44.000 0.00 0.00 0.00 3.32
249 250 5.071788 ACCAGTCTTAGAAATCAGGTGACAA 59.928 40.000 0.00 0.00 0.00 3.18
250 251 4.593206 ACCAGTCTTAGAAATCAGGTGACA 59.407 41.667 0.00 0.00 0.00 3.58
251 252 5.153950 ACCAGTCTTAGAAATCAGGTGAC 57.846 43.478 0.00 0.00 0.00 3.67
252 253 4.838423 TGACCAGTCTTAGAAATCAGGTGA 59.162 41.667 0.00 0.00 0.00 4.02
253 254 4.932200 GTGACCAGTCTTAGAAATCAGGTG 59.068 45.833 0.00 0.00 0.00 4.00
254 255 4.593206 TGTGACCAGTCTTAGAAATCAGGT 59.407 41.667 0.00 0.00 0.00 4.00
255 256 5.152623 TGTGACCAGTCTTAGAAATCAGG 57.847 43.478 0.00 0.00 0.00 3.86
256 257 6.093219 CCATTGTGACCAGTCTTAGAAATCAG 59.907 42.308 0.00 0.00 0.00 2.90
257 258 5.939883 CCATTGTGACCAGTCTTAGAAATCA 59.060 40.000 0.00 0.00 0.00 2.57
258 259 5.355350 CCCATTGTGACCAGTCTTAGAAATC 59.645 44.000 0.00 0.00 0.00 2.17
259 260 5.256474 CCCATTGTGACCAGTCTTAGAAAT 58.744 41.667 0.00 0.00 0.00 2.17
260 261 4.506625 CCCCATTGTGACCAGTCTTAGAAA 60.507 45.833 0.00 0.00 0.00 2.52
261 262 3.009033 CCCCATTGTGACCAGTCTTAGAA 59.991 47.826 0.00 0.00 0.00 2.10
262 263 2.571653 CCCCATTGTGACCAGTCTTAGA 59.428 50.000 0.00 0.00 0.00 2.10
263 264 2.571653 TCCCCATTGTGACCAGTCTTAG 59.428 50.000 0.00 0.00 0.00 2.18
264 265 2.571653 CTCCCCATTGTGACCAGTCTTA 59.428 50.000 0.00 0.00 0.00 2.10
265 266 1.352352 CTCCCCATTGTGACCAGTCTT 59.648 52.381 0.00 0.00 0.00 3.01
268 269 0.475632 TCCTCCCCATTGTGACCAGT 60.476 55.000 0.00 0.00 0.00 4.00
278 279 5.098663 TGTTACTTCTAAGTTCCTCCCCAT 58.901 41.667 0.00 0.00 40.37 4.00
289 290 6.455647 TGGAGTGTGTGATGTTACTTCTAAG 58.544 40.000 0.17 0.00 0.00 2.18
317 318 1.064803 TGTGCCACGTAAGCAAAGTTG 59.935 47.619 13.45 0.00 43.02 3.16
329 330 6.479990 TCTCTCTTCATTAAATATGTGCCACG 59.520 38.462 0.00 0.00 0.00 4.94
333 334 7.519649 GCACCTCTCTCTTCATTAAATATGTGC 60.520 40.741 0.00 0.00 35.67 4.57
337 338 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
383 384 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
384 385 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
390 391 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
399 400 2.635714 TGATGACCTAGAACTACGCGA 58.364 47.619 15.93 0.00 0.00 5.87
400 401 3.416119 TTGATGACCTAGAACTACGCG 57.584 47.619 3.53 3.53 0.00 6.01
401 402 7.042658 CCTTAAATTGATGACCTAGAACTACGC 60.043 40.741 0.00 0.00 0.00 4.42
402 403 8.195436 TCCTTAAATTGATGACCTAGAACTACG 58.805 37.037 0.00 0.00 0.00 3.51
403 404 9.886132 TTCCTTAAATTGATGACCTAGAACTAC 57.114 33.333 0.00 0.00 0.00 2.73
448 449 9.832445 GGAAATCTAGTGGTATAGTTTTCATGA 57.168 33.333 14.49 0.00 40.28 3.07
449 450 9.613428 TGGAAATCTAGTGGTATAGTTTTCATG 57.387 33.333 14.49 0.00 40.28 3.07
450 451 9.614792 GTGGAAATCTAGTGGTATAGTTTTCAT 57.385 33.333 14.49 0.00 40.28 2.57
451 452 8.598916 TGTGGAAATCTAGTGGTATAGTTTTCA 58.401 33.333 14.49 4.08 40.28 2.69
452 453 8.880750 GTGTGGAAATCTAGTGGTATAGTTTTC 58.119 37.037 8.02 8.02 39.04 2.29
453 454 7.548075 CGTGTGGAAATCTAGTGGTATAGTTTT 59.452 37.037 0.00 0.00 30.82 2.43
454 455 7.039882 CGTGTGGAAATCTAGTGGTATAGTTT 58.960 38.462 0.00 0.00 0.00 2.66
455 456 6.406624 CCGTGTGGAAATCTAGTGGTATAGTT 60.407 42.308 0.00 0.00 37.49 2.24
456 457 5.068723 CCGTGTGGAAATCTAGTGGTATAGT 59.931 44.000 0.00 0.00 37.49 2.12
457 458 5.301045 TCCGTGTGGAAATCTAGTGGTATAG 59.699 44.000 0.00 0.00 42.85 1.31
458 459 5.202765 TCCGTGTGGAAATCTAGTGGTATA 58.797 41.667 0.00 0.00 42.85 1.47
459 460 4.028131 TCCGTGTGGAAATCTAGTGGTAT 58.972 43.478 0.00 0.00 42.85 2.73
460 461 3.433343 TCCGTGTGGAAATCTAGTGGTA 58.567 45.455 0.00 0.00 42.85 3.25
461 462 2.253610 TCCGTGTGGAAATCTAGTGGT 58.746 47.619 0.00 0.00 42.85 4.16
531 532 7.859875 GCGTAGTTCTAGGTCGATAATTTAACT 59.140 37.037 0.00 0.00 0.00 2.24
532 533 7.149224 CGCGTAGTTCTAGGTCGATAATTTAAC 60.149 40.741 0.00 0.00 0.00 2.01
534 535 6.202762 TCGCGTAGTTCTAGGTCGATAATTTA 59.797 38.462 5.77 0.00 0.00 1.40
536 537 4.512944 TCGCGTAGTTCTAGGTCGATAATT 59.487 41.667 5.77 0.00 0.00 1.40
537 538 4.060900 TCGCGTAGTTCTAGGTCGATAAT 58.939 43.478 5.77 0.00 0.00 1.28
538 539 3.457234 TCGCGTAGTTCTAGGTCGATAA 58.543 45.455 5.77 0.00 0.00 1.75
539 540 3.097877 TCGCGTAGTTCTAGGTCGATA 57.902 47.619 5.77 0.00 0.00 2.92
540 541 1.945387 TCGCGTAGTTCTAGGTCGAT 58.055 50.000 5.77 0.00 0.00 3.59
542 543 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
543 544 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
544 545 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
545 546 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
549 550 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
550 551 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
552 553 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
553 554 3.548616 CCGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
554 555 2.456989 CGGTGTATAAGTCATTCGCGT 58.543 47.619 5.77 0.00 0.00 6.01
555 556 1.784856 CCGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
556 557 2.132762 CCCGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
557 558 3.378339 GTCCCGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
558 559 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
559 560 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
574 675 2.228925 CTTAGCTACTACCTCCGTCCC 58.771 57.143 0.00 0.00 0.00 4.46
575 676 2.929641 ACTTAGCTACTACCTCCGTCC 58.070 52.381 0.00 0.00 0.00 4.79
584 685 5.887598 TGATGTTCCGGTAACTTAGCTACTA 59.112 40.000 0.00 0.00 38.99 1.82
652 753 6.316140 GGAACATCTATGTAGTGTCATGCAAA 59.684 38.462 0.00 0.00 40.80 3.68
690 791 9.490083 ACATTTTCCTAGACTATGTTACTACCT 57.510 33.333 0.00 0.00 0.00 3.08
758 859 1.143073 AGGTTGAGGTTGAGGTTGGTC 59.857 52.381 0.00 0.00 0.00 4.02
759 860 1.133792 CAGGTTGAGGTTGAGGTTGGT 60.134 52.381 0.00 0.00 0.00 3.67
760 861 1.142870 TCAGGTTGAGGTTGAGGTTGG 59.857 52.381 0.00 0.00 0.00 3.77
761 862 2.222027 GTCAGGTTGAGGTTGAGGTTG 58.778 52.381 0.00 0.00 0.00 3.77
762 863 1.202651 CGTCAGGTTGAGGTTGAGGTT 60.203 52.381 0.00 0.00 0.00 3.50
763 864 0.393077 CGTCAGGTTGAGGTTGAGGT 59.607 55.000 0.00 0.00 0.00 3.85
764 865 0.951040 GCGTCAGGTTGAGGTTGAGG 60.951 60.000 1.42 0.00 34.95 3.86
765 866 0.951040 GGCGTCAGGTTGAGGTTGAG 60.951 60.000 1.42 0.00 34.95 3.02
766 867 1.070786 GGCGTCAGGTTGAGGTTGA 59.929 57.895 1.42 0.00 34.95 3.18
767 868 0.535102 AAGGCGTCAGGTTGAGGTTG 60.535 55.000 0.00 0.00 34.95 3.77
768 869 0.535102 CAAGGCGTCAGGTTGAGGTT 60.535 55.000 0.00 0.00 34.95 3.50
769 870 1.071471 CAAGGCGTCAGGTTGAGGT 59.929 57.895 0.00 0.00 34.95 3.85
770 871 2.328099 GCAAGGCGTCAGGTTGAGG 61.328 63.158 0.00 0.00 35.54 3.86
771 872 0.886490 AAGCAAGGCGTCAGGTTGAG 60.886 55.000 0.00 0.00 0.00 3.02
772 873 0.465460 AAAGCAAGGCGTCAGGTTGA 60.465 50.000 0.00 0.00 0.00 3.18
773 874 1.197721 CTAAAGCAAGGCGTCAGGTTG 59.802 52.381 0.00 0.00 0.00 3.77
774 875 1.523758 CTAAAGCAAGGCGTCAGGTT 58.476 50.000 0.00 0.00 0.00 3.50
775 876 0.955919 GCTAAAGCAAGGCGTCAGGT 60.956 55.000 0.00 0.00 41.59 4.00
776 877 0.674895 AGCTAAAGCAAGGCGTCAGG 60.675 55.000 4.54 0.00 45.16 3.86
777 878 0.445436 CAGCTAAAGCAAGGCGTCAG 59.555 55.000 4.54 0.00 45.16 3.51
778 879 0.034756 TCAGCTAAAGCAAGGCGTCA 59.965 50.000 4.54 0.00 45.16 4.35
779 880 0.444260 GTCAGCTAAAGCAAGGCGTC 59.556 55.000 4.54 0.00 45.16 5.19
780 881 1.291877 CGTCAGCTAAAGCAAGGCGT 61.292 55.000 11.62 0.00 45.16 5.68
781 882 1.421485 CGTCAGCTAAAGCAAGGCG 59.579 57.895 4.54 5.93 45.16 5.52
782 883 1.135523 GCGTCAGCTAAAGCAAGGC 59.864 57.895 4.54 5.64 45.16 4.35
783 884 1.796796 GGCGTCAGCTAAAGCAAGG 59.203 57.895 4.54 0.00 45.16 3.61
784 885 1.291877 ACGGCGTCAGCTAAAGCAAG 61.292 55.000 6.77 0.00 45.16 4.01
785 886 0.882927 AACGGCGTCAGCTAAAGCAA 60.883 50.000 15.17 0.00 45.16 3.91
786 887 0.038067 TAACGGCGTCAGCTAAAGCA 60.038 50.000 15.17 0.00 45.16 3.91
787 888 1.258197 GATAACGGCGTCAGCTAAAGC 59.742 52.381 15.17 0.00 44.37 3.51
788 889 1.859080 GGATAACGGCGTCAGCTAAAG 59.141 52.381 15.17 0.00 44.37 1.85
789 890 1.799917 CGGATAACGGCGTCAGCTAAA 60.800 52.381 15.17 0.00 44.37 1.85
790 891 0.248743 CGGATAACGGCGTCAGCTAA 60.249 55.000 15.17 0.00 44.37 3.09
791 892 1.357690 CGGATAACGGCGTCAGCTA 59.642 57.895 15.17 1.44 44.37 3.32
792 893 2.104331 CGGATAACGGCGTCAGCT 59.896 61.111 15.17 0.00 44.37 4.24
801 902 1.292992 GTTGGGCTAACCGGATAACG 58.707 55.000 9.46 0.00 44.64 3.18
810 911 1.608336 GGGGTTGGGTTGGGCTAAC 60.608 63.158 5.00 5.00 38.60 2.34
811 912 1.780911 AGGGGTTGGGTTGGGCTAA 60.781 57.895 0.00 0.00 0.00 3.09
812 913 2.121228 AGGGGTTGGGTTGGGCTA 60.121 61.111 0.00 0.00 0.00 3.93
813 914 3.914713 CAGGGGTTGGGTTGGGCT 61.915 66.667 0.00 0.00 0.00 5.19
822 923 6.431234 GTCAGCTAATTAATATCCAGGGGTTG 59.569 42.308 0.00 0.00 0.00 3.77
823 924 6.543735 GTCAGCTAATTAATATCCAGGGGTT 58.456 40.000 0.00 0.00 0.00 4.11
824 925 5.280011 CGTCAGCTAATTAATATCCAGGGGT 60.280 44.000 0.00 0.00 0.00 4.95
825 926 5.046591 TCGTCAGCTAATTAATATCCAGGGG 60.047 44.000 0.00 0.00 0.00 4.79
826 927 6.037786 TCGTCAGCTAATTAATATCCAGGG 57.962 41.667 0.00 0.00 0.00 4.45
827 928 6.925211 TCTCGTCAGCTAATTAATATCCAGG 58.075 40.000 0.00 0.00 0.00 4.45
828 929 6.529829 GCTCTCGTCAGCTAATTAATATCCAG 59.470 42.308 0.00 0.00 36.38 3.86
829 930 6.015434 TGCTCTCGTCAGCTAATTAATATCCA 60.015 38.462 9.30 0.00 40.39 3.41
830 931 6.390721 TGCTCTCGTCAGCTAATTAATATCC 58.609 40.000 9.30 0.00 40.39 2.59
831 932 7.382488 TGTTGCTCTCGTCAGCTAATTAATATC 59.618 37.037 9.30 0.00 40.39 1.63
832 933 7.210174 TGTTGCTCTCGTCAGCTAATTAATAT 58.790 34.615 9.30 0.00 40.39 1.28
833 934 6.569780 TGTTGCTCTCGTCAGCTAATTAATA 58.430 36.000 9.30 0.00 40.39 0.98
834 935 5.419542 TGTTGCTCTCGTCAGCTAATTAAT 58.580 37.500 9.30 0.00 40.39 1.40
835 936 4.816392 TGTTGCTCTCGTCAGCTAATTAA 58.184 39.130 9.30 0.00 40.39 1.40
836 937 4.450082 TGTTGCTCTCGTCAGCTAATTA 57.550 40.909 9.30 0.00 40.39 1.40
837 938 3.319137 TGTTGCTCTCGTCAGCTAATT 57.681 42.857 9.30 0.00 40.39 1.40
838 939 2.996621 GTTGTTGCTCTCGTCAGCTAAT 59.003 45.455 9.30 0.00 40.39 1.73
839 940 2.404215 GTTGTTGCTCTCGTCAGCTAA 58.596 47.619 9.30 1.28 40.39 3.09
840 941 1.666023 CGTTGTTGCTCTCGTCAGCTA 60.666 52.381 9.30 0.16 40.39 3.32
844 945 1.954146 GGCGTTGTTGCTCTCGTCA 60.954 57.895 0.00 0.00 34.52 4.35
853 954 0.453793 TTTGGACACAGGCGTTGTTG 59.546 50.000 0.00 0.00 38.16 3.33
901 1002 2.767536 GCGTCAGCTAAGCAATGGA 58.232 52.632 0.00 0.00 41.01 3.41
919 1020 5.003160 TGATTGATAATGGCCGGATAACAG 58.997 41.667 5.05 0.00 0.00 3.16
931 1035 3.490348 GGGGGTGGACTGATTGATAATG 58.510 50.000 0.00 0.00 0.00 1.90
988 1110 2.717044 CCACCATCACGGACGCCTA 61.717 63.158 0.00 0.00 38.63 3.93
989 1111 4.082523 CCACCATCACGGACGCCT 62.083 66.667 0.00 0.00 38.63 5.52
1005 1127 1.573108 TCTCCTTCTCCATCACCACC 58.427 55.000 0.00 0.00 0.00 4.61
1006 1128 2.158842 CCATCTCCTTCTCCATCACCAC 60.159 54.545 0.00 0.00 0.00 4.16
1007 1129 2.121948 CCATCTCCTTCTCCATCACCA 58.878 52.381 0.00 0.00 0.00 4.17
1008 1130 2.368221 CTCCATCTCCTTCTCCATCACC 59.632 54.545 0.00 0.00 0.00 4.02
1009 1131 3.303938 TCTCCATCTCCTTCTCCATCAC 58.696 50.000 0.00 0.00 0.00 3.06
1010 1132 3.695357 TCTCCATCTCCTTCTCCATCA 57.305 47.619 0.00 0.00 0.00 3.07
1019 1141 1.470996 GCGCTCCATCTCCATCTCCT 61.471 60.000 0.00 0.00 0.00 3.69
1144 1272 3.519930 GAGGAGGTCGTCGGAGGC 61.520 72.222 0.00 0.00 0.00 4.70
1153 1281 3.462678 GGGCTGGACGAGGAGGTC 61.463 72.222 0.00 0.00 36.18 3.85
1249 1528 1.128692 CGATCTGGAAAAACTGACGCC 59.871 52.381 0.00 0.00 0.00 5.68
1250 1529 2.066262 TCGATCTGGAAAAACTGACGC 58.934 47.619 0.00 0.00 0.00 5.19
1252 1531 3.399330 TGGTCGATCTGGAAAAACTGAC 58.601 45.455 0.00 0.00 0.00 3.51
1255 1534 4.911390 AGATTGGTCGATCTGGAAAAACT 58.089 39.130 0.00 0.00 35.13 2.66
1257 1536 5.046304 AGAGAGATTGGTCGATCTGGAAAAA 60.046 40.000 5.51 0.00 36.54 1.94
1261 1540 3.304911 AGAGAGATTGGTCGATCTGGA 57.695 47.619 5.51 0.00 36.54 3.86
1262 1541 6.825944 TTATAGAGAGATTGGTCGATCTGG 57.174 41.667 5.51 0.00 36.54 3.86
1284 1563 2.755103 GCAGAAGGATCGGTTGGAATTT 59.245 45.455 0.00 0.00 0.00 1.82
1285 1564 2.290896 TGCAGAAGGATCGGTTGGAATT 60.291 45.455 0.00 0.00 0.00 2.17
1286 1565 1.281867 TGCAGAAGGATCGGTTGGAAT 59.718 47.619 0.00 0.00 0.00 3.01
1287 1566 0.690192 TGCAGAAGGATCGGTTGGAA 59.310 50.000 0.00 0.00 0.00 3.53
1288 1567 0.250234 CTGCAGAAGGATCGGTTGGA 59.750 55.000 8.42 0.00 0.00 3.53
1300 1579 4.704833 GGCGCTCCACCTGCAGAA 62.705 66.667 17.39 0.00 0.00 3.02
1371 1650 0.531974 TTGCAGTGGTCGTGGAAGAC 60.532 55.000 0.00 0.00 40.25 3.01
1380 1659 2.641559 GCTGTGCTTGCAGTGGTC 59.358 61.111 0.00 0.00 38.65 4.02
1400 1679 1.144936 CTTGTCCTCCAGGGCGATC 59.855 63.158 0.00 0.00 44.44 3.69
1425 1704 1.870055 TTGGTGTCGTACGAGAGGGC 61.870 60.000 20.18 7.06 0.00 5.19
1430 1709 1.990563 GGAATGTTGGTGTCGTACGAG 59.009 52.381 20.18 0.00 0.00 4.18
1463 1742 1.617181 ATCTGAGGGAGGATGGGGGT 61.617 60.000 0.00 0.00 0.00 4.95
1465 1744 0.839853 GGATCTGAGGGAGGATGGGG 60.840 65.000 0.00 0.00 0.00 4.96
1469 1748 0.178947 GGACGGATCTGAGGGAGGAT 60.179 60.000 9.00 0.00 0.00 3.24
1470 1749 1.230497 GGACGGATCTGAGGGAGGA 59.770 63.158 9.00 0.00 0.00 3.71
1471 1750 2.196925 CGGACGGATCTGAGGGAGG 61.197 68.421 9.00 0.00 32.26 4.30
1472 1751 0.179026 TACGGACGGATCTGAGGGAG 60.179 60.000 9.00 0.00 34.98 4.30
1515 1803 4.354943 AGGGAGGGAGGGTGTGGG 62.355 72.222 0.00 0.00 0.00 4.61
1516 1804 2.689034 GAGGGAGGGAGGGTGTGG 60.689 72.222 0.00 0.00 0.00 4.17
1517 1805 1.992277 CTGAGGGAGGGAGGGTGTG 60.992 68.421 0.00 0.00 0.00 3.82
1518 1806 1.531981 ATCTGAGGGAGGGAGGGTGT 61.532 60.000 0.00 0.00 0.00 4.16
1519 1807 0.762461 GATCTGAGGGAGGGAGGGTG 60.762 65.000 0.00 0.00 0.00 4.61
1520 1808 1.629297 GATCTGAGGGAGGGAGGGT 59.371 63.158 0.00 0.00 0.00 4.34
1524 1812 2.727071 GGGGGATCTGAGGGAGGGA 61.727 68.421 0.00 0.00 0.00 4.20
1527 1815 0.842635 CTTTGGGGGATCTGAGGGAG 59.157 60.000 0.00 0.00 0.00 4.30
1529 1817 1.527457 ATCTTTGGGGGATCTGAGGG 58.473 55.000 0.00 0.00 0.00 4.30
1589 1877 0.673022 CTGTTGGCAGCAGAGGAGAC 60.673 60.000 24.97 0.00 35.77 3.36
1591 1879 1.376942 CCTGTTGGCAGCAGAGGAG 60.377 63.158 29.78 11.39 41.26 3.69
1685 2093 3.225061 GGACCTCGACCCCGATCC 61.225 72.222 0.00 0.00 44.62 3.36
1709 2117 2.892425 CGGCGTTGAGGATGAGGC 60.892 66.667 0.00 0.00 0.00 4.70
1791 2199 3.398406 TGCCACGCATTATACCATGTAG 58.602 45.455 0.00 0.00 31.71 2.74
1806 2214 2.631267 TGCATATATATGGCTGCCACG 58.369 47.619 25.99 7.62 35.80 4.94
1815 2223 7.692460 AGGTGAACATGGTTGCATATATATG 57.308 36.000 17.01 17.01 36.78 1.78
1816 2224 7.944000 TGAAGGTGAACATGGTTGCATATATAT 59.056 33.333 0.00 0.00 0.00 0.86
1850 2258 7.941795 AATCAAAAGATTCAGCAAAACAGAG 57.058 32.000 0.00 0.00 0.00 3.35
1870 2278 5.126869 TCCTGAGAAGCAAAACACAAAATCA 59.873 36.000 0.00 0.00 0.00 2.57
1871 2279 5.591099 TCCTGAGAAGCAAAACACAAAATC 58.409 37.500 0.00 0.00 0.00 2.17
1872 2280 5.596836 TCCTGAGAAGCAAAACACAAAAT 57.403 34.783 0.00 0.00 0.00 1.82
1873 2281 5.596836 ATCCTGAGAAGCAAAACACAAAA 57.403 34.783 0.00 0.00 0.00 2.44
1874 2282 5.596836 AATCCTGAGAAGCAAAACACAAA 57.403 34.783 0.00 0.00 0.00 2.83
1925 2333 1.214325 CGGCGTGTACACTCCATGA 59.786 57.895 29.34 0.00 36.01 3.07
2003 2411 0.752658 AGCTTGAACAAACCTTGCCC 59.247 50.000 0.00 0.00 0.00 5.36
2020 2428 7.623268 AAAAACGATGTGATTTAAACTCAGC 57.377 32.000 0.00 0.00 0.00 4.26
2041 2449 4.864247 GCAAGACTGTTCAAGCAAGAAAAA 59.136 37.500 0.00 0.00 0.00 1.94
2046 2454 2.996155 CAGCAAGACTGTTCAAGCAAG 58.004 47.619 0.00 0.00 41.86 4.01
2058 2466 4.801891 TCAAATGCAGAAATCAGCAAGAC 58.198 39.130 4.56 0.00 41.62 3.01
2063 2471 4.184079 AGGTTCAAATGCAGAAATCAGC 57.816 40.909 0.00 0.00 0.00 4.26
2069 2477 4.036734 GTCAGACAAGGTTCAAATGCAGAA 59.963 41.667 0.00 0.00 0.00 3.02
2072 2480 3.316029 CAGTCAGACAAGGTTCAAATGCA 59.684 43.478 2.66 0.00 0.00 3.96
2073 2481 3.565482 TCAGTCAGACAAGGTTCAAATGC 59.435 43.478 2.66 0.00 0.00 3.56
2090 2498 2.898705 CTGCTGTGGACCTAATCAGTC 58.101 52.381 0.00 0.00 0.00 3.51
2135 2543 8.252997 TTCATGGATGATATTACGAACTCGTCG 61.253 40.741 8.24 0.00 45.25 5.12
2145 2553 7.513968 GCGACTTCTTTCATGGATGATATTAC 58.486 38.462 0.00 0.00 36.56 1.89
2174 2582 1.067416 GTGGCCATCATACGCGAGA 59.933 57.895 15.93 8.27 0.00 4.04
2219 2627 2.013483 CATAAGCCTCGCGAGCTCG 61.013 63.158 31.37 31.37 40.49 5.03
2285 2693 3.056749 ACGTCGGCTAAATTCTGTTCTCT 60.057 43.478 0.00 0.00 0.00 3.10
2288 2696 2.735134 ACACGTCGGCTAAATTCTGTTC 59.265 45.455 0.00 0.00 0.00 3.18
2294 2702 3.852286 TCATACACACGTCGGCTAAATT 58.148 40.909 0.00 0.00 0.00 1.82
2295 2703 3.513680 TCATACACACGTCGGCTAAAT 57.486 42.857 0.00 0.00 0.00 1.40
2299 2707 2.380084 ATTTCATACACACGTCGGCT 57.620 45.000 0.00 0.00 0.00 5.52
2300 2708 3.465122 AAATTTCATACACACGTCGGC 57.535 42.857 0.00 0.00 0.00 5.54
2301 2709 6.035650 ACAGATAAATTTCATACACACGTCGG 59.964 38.462 0.00 0.00 0.00 4.79
2302 2710 6.894517 CACAGATAAATTTCATACACACGTCG 59.105 38.462 0.00 0.00 0.00 5.12
2303 2711 6.682863 GCACAGATAAATTTCATACACACGTC 59.317 38.462 0.00 0.00 0.00 4.34
2304 2712 6.148645 TGCACAGATAAATTTCATACACACGT 59.851 34.615 0.00 0.00 0.00 4.49
2306 2714 6.470235 GCTGCACAGATAAATTTCATACACAC 59.530 38.462 0.81 0.00 0.00 3.82
2325 2746 2.869192 GGAATAGCTTCTACTGCTGCAC 59.131 50.000 0.00 0.00 41.32 4.57
2336 2757 6.472808 CACGACTAGTTAACTGGAATAGCTTC 59.527 42.308 24.08 9.21 0.00 3.86
2343 2764 3.068448 TGTGCACGACTAGTTAACTGGAA 59.932 43.478 24.08 1.12 0.00 3.53
2344 2765 2.624364 TGTGCACGACTAGTTAACTGGA 59.376 45.455 24.08 3.28 0.00 3.86
2345 2766 3.021269 TGTGCACGACTAGTTAACTGG 57.979 47.619 18.56 17.57 0.00 4.00
2346 2767 5.374080 CAATTGTGCACGACTAGTTAACTG 58.626 41.667 18.56 10.41 0.00 3.16
2347 2768 4.451096 CCAATTGTGCACGACTAGTTAACT 59.549 41.667 9.51 13.68 0.00 2.24
2365 2786 4.057432 CAAACATTTTCCTGCGACCAATT 58.943 39.130 0.00 0.00 0.00 2.32
2404 2825 6.430925 CCTCAACCATCTTTATGTTCAACTCA 59.569 38.462 0.00 0.00 0.00 3.41
2488 2909 2.362369 ATCACCGTCTGGGCAGAGG 61.362 63.158 0.00 0.00 41.55 3.69
2491 2912 2.821366 GCATCACCGTCTGGGCAG 60.821 66.667 0.00 0.00 40.62 4.85
2514 2935 2.650116 GCCGTCTTCAGGAGCTCCA 61.650 63.158 33.90 12.52 38.89 3.86
2515 2936 2.185608 GCCGTCTTCAGGAGCTCC 59.814 66.667 26.22 26.22 0.00 4.70
2545 2966 1.227823 CTGCTCCACCACGAAACCA 60.228 57.895 0.00 0.00 0.00 3.67
2584 3005 0.689623 CCAGCTCCTCCTTTGTCAGT 59.310 55.000 0.00 0.00 0.00 3.41
2607 3028 5.939764 TGGCTACTGATGACTTGATAAGT 57.060 39.130 0.00 0.00 46.38 2.24
2620 3041 6.753913 ATATGAGATCCTTTTGGCTACTGA 57.246 37.500 0.00 0.00 40.12 3.41
2663 3084 7.961283 GTCAATTTAAGACAACTAATTCGGGAC 59.039 37.037 0.00 0.00 36.06 4.46
2676 3097 9.743057 CCAAATTAGTTGTGTCAATTTAAGACA 57.257 29.630 0.00 0.00 37.74 3.41
2683 3104 5.278758 CCGTCCCAAATTAGTTGTGTCAATT 60.279 40.000 0.00 0.00 35.23 2.32
2687 3108 2.486592 CCCGTCCCAAATTAGTTGTGTC 59.513 50.000 0.00 0.00 35.23 3.67
2688 3109 2.510613 CCCGTCCCAAATTAGTTGTGT 58.489 47.619 0.00 0.00 35.23 3.72
2689 3110 1.816224 CCCCGTCCCAAATTAGTTGTG 59.184 52.381 0.00 0.00 35.23 3.33
2695 3179 4.720773 TGTCTATTACCCCGTCCCAAATTA 59.279 41.667 0.00 0.00 0.00 1.40
2714 3199 2.775911 TGCTTGCTATGCTCTTGTCT 57.224 45.000 0.00 0.00 0.00 3.41
2717 3202 2.121116 GCATGCTTGCTATGCTCTTG 57.879 50.000 16.80 1.56 45.64 3.02
2775 3262 2.825532 TGATCCTGTGATGACTCGAACA 59.174 45.455 0.00 0.00 0.00 3.18
2799 3286 9.462174 GTATGATGAAACAACATGAAAAACTCA 57.538 29.630 0.00 0.00 38.81 3.41
2821 3308 4.630894 ACACCACACACACAAAAGTATG 57.369 40.909 0.00 0.00 0.00 2.39
2822 3309 5.883673 ACTTACACCACACACACAAAAGTAT 59.116 36.000 0.00 0.00 0.00 2.12
2824 3311 4.076394 ACTTACACCACACACACAAAAGT 58.924 39.130 0.00 0.00 0.00 2.66
2828 3469 2.027100 TCCACTTACACCACACACACAA 60.027 45.455 0.00 0.00 0.00 3.33
2848 3489 5.756833 TCAGCATGATGATACATCAGTGTTC 59.243 40.000 10.16 6.86 42.56 3.18
2893 3534 6.037610 ACAATGAGATCATCGGTAAGAAAAGC 59.962 38.462 0.00 0.00 35.10 3.51
2925 3566 5.474876 AGGAACAAGATTGATTGGTTCTGAC 59.525 40.000 0.00 0.00 34.28 3.51
2991 3636 2.359967 GGGGACCGTAAGCAGAGCT 61.360 63.158 0.00 0.00 40.86 4.09
3036 3681 2.046217 GAGAGGCCCGGTTTGTCC 60.046 66.667 0.00 0.00 0.00 4.02
3038 3683 1.415672 TTGAGAGAGGCCCGGTTTGT 61.416 55.000 0.00 0.00 0.00 2.83
3042 3687 3.382832 CGTTGAGAGAGGCCCGGT 61.383 66.667 0.00 0.00 0.00 5.28
3043 3688 4.821589 GCGTTGAGAGAGGCCCGG 62.822 72.222 0.00 0.00 0.00 5.73
3046 3691 2.507324 GTCGCGTTGAGAGAGGCC 60.507 66.667 5.77 0.00 0.00 5.19
3048 3693 1.878656 AAGGGTCGCGTTGAGAGAGG 61.879 60.000 5.77 0.00 0.00 3.69
3051 3696 1.289066 TCAAGGGTCGCGTTGAGAG 59.711 57.895 5.77 0.00 0.00 3.20
3052 3697 3.450507 TCAAGGGTCGCGTTGAGA 58.549 55.556 5.77 0.00 0.00 3.27
3054 3699 2.342279 CCTCAAGGGTCGCGTTGA 59.658 61.111 5.77 7.91 0.00 3.18
3055 3700 3.423154 GCCTCAAGGGTCGCGTTG 61.423 66.667 5.77 2.99 37.43 4.10
3108 5456 4.410400 CTTGGGGGTCTCCGTGCC 62.410 72.222 0.00 0.00 36.01 5.01
3114 5462 1.179174 GGTTTGTGCTTGGGGGTCTC 61.179 60.000 0.00 0.00 0.00 3.36
3116 5464 2.207229 GGGTTTGTGCTTGGGGGTC 61.207 63.158 0.00 0.00 0.00 4.46
3117 5465 2.123033 GGGTTTGTGCTTGGGGGT 60.123 61.111 0.00 0.00 0.00 4.95
3121 5469 1.069596 GGCTTGGGTTTGTGCTTGG 59.930 57.895 0.00 0.00 0.00 3.61
3122 5470 1.069596 GGGCTTGGGTTTGTGCTTG 59.930 57.895 0.00 0.00 0.00 4.01
3123 5471 1.382420 TGGGCTTGGGTTTGTGCTT 60.382 52.632 0.00 0.00 0.00 3.91
3124 5472 2.133641 GTGGGCTTGGGTTTGTGCT 61.134 57.895 0.00 0.00 0.00 4.40
3150 5498 0.107459 GGAAGATGCTGGAGTGGGAC 60.107 60.000 0.00 0.00 0.00 4.46
3163 5511 2.125512 GTGCGAGCGTGGGAAGAT 60.126 61.111 0.00 0.00 0.00 2.40
3262 5611 1.852157 TTCTCCCGCCATCCAAGCTT 61.852 55.000 0.00 0.00 0.00 3.74
3263 5612 2.262774 CTTCTCCCGCCATCCAAGCT 62.263 60.000 0.00 0.00 0.00 3.74
3267 5616 2.721167 CGTCTTCTCCCGCCATCCA 61.721 63.158 0.00 0.00 0.00 3.41
3460 5809 2.489329 TCATTTACAGGAGCAGCAAAGC 59.511 45.455 0.00 0.00 0.00 3.51
3470 5819 7.194112 TCTTCCATGTACATCATTTACAGGA 57.806 36.000 5.07 4.29 33.95 3.86
3474 5823 9.330063 TCAGAATCTTCCATGTACATCATTTAC 57.670 33.333 5.07 0.00 34.09 2.01
3487 5838 4.959723 GCTCTAAGCTCAGAATCTTCCAT 58.040 43.478 0.00 0.00 38.45 3.41
3523 5874 2.095567 CCACTCCAGAAATCAAACGCTG 60.096 50.000 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.