Multiple sequence alignment - TraesCS6A01G071200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G071200 chr6A 100.000 4269 0 0 1 4269 39050342 39046074 0.000000e+00 7884.0
1 TraesCS6A01G071200 chr6A 89.544 2410 140 43 937 3317 39130113 39132439 0.000000e+00 2952.0
2 TraesCS6A01G071200 chr6A 80.793 984 92 47 59 999 38869610 38870539 0.000000e+00 680.0
3 TraesCS6A01G071200 chr6A 94.079 304 18 0 3772 4075 39041697 39041394 3.010000e-126 462.0
4 TraesCS6A01G071200 chr6A 92.114 317 24 1 3772 4088 39039244 39038929 3.030000e-121 446.0
5 TraesCS6A01G071200 chr6A 83.799 358 37 9 2194 2551 39002137 39002473 1.920000e-83 320.0
6 TraesCS6A01G071200 chr6A 95.876 194 8 0 4076 4269 39033727 39033534 8.910000e-82 315.0
7 TraesCS6A01G071200 chr6A 94.330 194 11 0 4076 4269 39031274 39031081 8.970000e-77 298.0
8 TraesCS6A01G071200 chr6A 91.500 200 14 1 2456 2655 39001946 39002142 5.440000e-69 272.0
9 TraesCS6A01G071200 chr6A 94.318 176 10 0 1482 1657 38893080 38893255 1.960000e-68 270.0
10 TraesCS6A01G071200 chr6A 80.781 333 34 11 1032 1355 38870848 38871159 2.570000e-57 233.0
11 TraesCS6A01G071200 chr6A 94.615 130 7 0 2615 2744 435591823 435591952 7.240000e-48 202.0
12 TraesCS6A01G071200 chr6A 79.911 224 11 9 676 892 39129906 39130102 2.680000e-27 134.0
13 TraesCS6A01G071200 chr6B 91.540 3475 157 48 71 3468 71709033 71705619 0.000000e+00 4662.0
14 TraesCS6A01G071200 chr6B 88.903 2433 151 52 927 3314 71839713 71842071 0.000000e+00 2887.0
15 TraesCS6A01G071200 chr6B 88.952 525 25 17 1409 1922 71591276 71591778 6.060000e-173 617.0
16 TraesCS6A01G071200 chr6B 87.823 542 41 16 343 871 71590671 71591200 2.820000e-171 612.0
17 TraesCS6A01G071200 chr6B 87.829 304 21 9 2096 2399 71591772 71592059 4.090000e-90 342.0
18 TraesCS6A01G071200 chr6B 82.432 296 20 13 281 557 71839143 71839425 3.320000e-56 230.0
19 TraesCS6A01G071200 chr6B 77.256 277 24 20 59 309 71585219 71585482 4.480000e-25 126.0
20 TraesCS6A01G071200 chr6B 95.161 62 3 0 831 892 71839647 71839708 9.770000e-17 99.0
21 TraesCS6A01G071200 chr6D 92.200 3372 137 32 1 3317 34737383 34734083 0.000000e+00 4654.0
22 TraesCS6A01G071200 chr6D 89.851 1941 119 38 1400 3317 34927605 34929490 0.000000e+00 2422.0
23 TraesCS6A01G071200 chr6D 84.655 971 64 37 223 1141 34593347 34594284 0.000000e+00 889.0
24 TraesCS6A01G071200 chr6D 77.113 1136 80 87 282 1369 34926605 34927608 3.840000e-135 492.0
25 TraesCS6A01G071200 chr6D 90.746 335 16 10 1455 1776 34647730 34648062 2.360000e-117 433.0
26 TraesCS6A01G071200 chr6D 89.167 120 6 2 3276 3394 34734031 34733918 4.450000e-30 143.0
27 TraesCS6A01G071200 chr6D 97.778 45 1 0 71 115 34926405 34926449 1.270000e-10 78.7
28 TraesCS6A01G071200 chr2A 93.173 498 34 0 3772 4269 640103347 640103844 0.000000e+00 732.0
29 TraesCS6A01G071200 chr2A 92.771 498 36 0 3772 4269 95623988 95624485 0.000000e+00 721.0
30 TraesCS6A01G071200 chr2A 91.952 497 39 1 3772 4268 95616085 95616580 0.000000e+00 695.0
31 TraesCS6A01G071200 chr2A 91.935 496 40 0 3772 4267 95621265 95621760 0.000000e+00 695.0
32 TraesCS6A01G071200 chr2A 91.365 498 43 0 3772 4269 95618772 95619269 0.000000e+00 682.0
33 TraesCS6A01G071200 chr1A 92.727 495 35 1 3775 4269 395000220 394999727 0.000000e+00 713.0
34 TraesCS6A01G071200 chr1A 92.369 498 38 0 3772 4269 394997733 394997236 0.000000e+00 710.0
35 TraesCS6A01G071200 chr1D 96.032 252 10 0 2540 2791 308198065 308197814 1.100000e-110 411.0
36 TraesCS6A01G071200 chr1D 97.619 42 1 0 3025 3066 308197818 308197777 5.920000e-09 73.1
37 TraesCS6A01G071200 chr5D 92.857 266 16 1 2515 2780 455834383 455834645 2.410000e-102 383.0
38 TraesCS6A01G071200 chr3B 92.784 194 9 4 2546 2735 424780841 424781033 4.200000e-70 276.0
39 TraesCS6A01G071200 chr5A 96.875 96 3 0 3011 3106 652055746 652055651 1.230000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G071200 chr6A 39046074 39050342 4268 True 7884.000000 7884 100.000000 1 4269 1 chr6A.!!$R1 4268
1 TraesCS6A01G071200 chr6A 39129906 39132439 2533 False 1543.000000 2952 84.727500 676 3317 2 chr6A.!!$F5 2641
2 TraesCS6A01G071200 chr6A 38869610 38871159 1549 False 456.500000 680 80.787000 59 1355 2 chr6A.!!$F3 1296
3 TraesCS6A01G071200 chr6A 39038929 39041697 2768 True 454.000000 462 93.096500 3772 4088 2 chr6A.!!$R3 316
4 TraesCS6A01G071200 chr6A 39031081 39033727 2646 True 306.500000 315 95.103000 4076 4269 2 chr6A.!!$R2 193
5 TraesCS6A01G071200 chr6A 39001946 39002473 527 False 296.000000 320 87.649500 2194 2655 2 chr6A.!!$F4 461
6 TraesCS6A01G071200 chr6B 71705619 71709033 3414 True 4662.000000 4662 91.540000 71 3468 1 chr6B.!!$R1 3397
7 TraesCS6A01G071200 chr6B 71839143 71842071 2928 False 1072.000000 2887 88.832000 281 3314 3 chr6B.!!$F3 3033
8 TraesCS6A01G071200 chr6B 71590671 71592059 1388 False 523.666667 617 88.201333 343 2399 3 chr6B.!!$F2 2056
9 TraesCS6A01G071200 chr6D 34733918 34737383 3465 True 2398.500000 4654 90.683500 1 3394 2 chr6D.!!$R1 3393
10 TraesCS6A01G071200 chr6D 34926405 34929490 3085 False 997.566667 2422 88.247333 71 3317 3 chr6D.!!$F3 3246
11 TraesCS6A01G071200 chr6D 34593347 34594284 937 False 889.000000 889 84.655000 223 1141 1 chr6D.!!$F1 918
12 TraesCS6A01G071200 chr2A 95616085 95624485 8400 False 698.250000 721 92.005750 3772 4269 4 chr2A.!!$F2 497
13 TraesCS6A01G071200 chr1A 394997236 395000220 2984 True 711.500000 713 92.548000 3772 4269 2 chr1A.!!$R1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 391 0.182775 CCACCTACCCATAACAGCCC 59.817 60.0 0.0 0.0 0.00 5.19 F
2257 2879 0.384725 CAAAGACGGCAAAGACGCAG 60.385 55.0 0.0 0.0 37.73 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2328 2950 0.108945 CGAGGGACCGGAGTTTGTAC 60.109 60.0 9.46 0.0 0.0 2.90 R
3577 4343 0.033796 ATGGTGGTGCAGATCCTTGG 60.034 55.0 0.00 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.408969 CTCCTCTTAGGTGCCTCCTC 58.591 60.000 0.67 0.00 44.42 3.71
85 93 2.415624 TCCTGGCTGGATCATGAGAAT 58.584 47.619 9.30 0.00 40.56 2.40
181 216 8.458843 TCTTGCTTAACTAGGCAATTAATCAAC 58.541 33.333 6.71 0.00 45.29 3.18
215 250 2.716988 GCATTGTGCAAGTTCGAGC 58.283 52.632 0.00 0.00 44.26 5.03
233 276 2.568090 CAAATCTGTGGCCGGCAC 59.432 61.111 30.85 23.59 0.00 5.01
250 293 3.734293 CGGCACTAGTAGTGGAGTTAAGC 60.734 52.174 27.48 13.08 46.01 3.09
330 391 0.182775 CCACCTACCCATAACAGCCC 59.817 60.000 0.00 0.00 0.00 5.19
336 397 1.286305 ACCCATAACAGCCCCCGATT 61.286 55.000 0.00 0.00 0.00 3.34
341 402 2.587322 TAACAGCCCCCGATTGAGCG 62.587 60.000 0.00 0.00 0.00 5.03
480 565 0.593128 GTATGGCCCTATGCTTTGCG 59.407 55.000 0.00 0.00 40.92 4.85
496 593 2.774799 GCGGATGATGCAACACCCC 61.775 63.158 0.95 4.60 0.00 4.95
557 654 4.779819 GCGATTGCTTTCAGCTGG 57.220 55.556 15.13 0.00 42.97 4.85
925 1115 2.905959 TTGATTGCACTGCTTCGATG 57.094 45.000 1.98 0.00 0.00 3.84
980 1178 1.228063 AAGCTGACCACTGGTGCTG 60.228 57.895 12.62 6.90 35.56 4.41
1238 1790 1.900245 TGATGATGATTCATGGCGGG 58.100 50.000 3.32 0.00 42.73 6.13
1255 1807 0.829182 GGGGGTGACGGATATACGGT 60.829 60.000 12.94 0.00 38.39 4.83
1276 1828 1.299976 GTTCTTGGAGATGGCGGGT 59.700 57.895 0.00 0.00 0.00 5.28
1692 2268 1.156736 CGGGTGATGGGAAATATCGC 58.843 55.000 0.00 0.00 38.90 4.58
1791 2373 2.604174 AACAGCCTTCGCGTTTCCG 61.604 57.895 5.77 0.00 41.18 4.30
1835 2436 1.271926 ACCTGACTGGGTGCCATTAAC 60.272 52.381 3.15 0.00 41.11 2.01
1844 2445 1.094785 GTGCCATTAACGCAGATGGT 58.905 50.000 11.65 0.00 43.77 3.55
1845 2446 1.064060 GTGCCATTAACGCAGATGGTC 59.936 52.381 11.65 6.33 43.77 4.02
2049 2662 4.767255 CTGGCGGGAGTGCAGGAC 62.767 72.222 0.00 0.00 36.28 3.85
2163 2785 2.669133 CGTGGGGAGGGCAGATTCA 61.669 63.158 0.00 0.00 0.00 2.57
2252 2874 3.339731 CGGCAAAGACGGCAAAGA 58.660 55.556 0.00 0.00 0.00 2.52
2253 2875 1.082104 CGGCAAAGACGGCAAAGAC 60.082 57.895 0.00 0.00 0.00 3.01
2254 2876 1.082104 GGCAAAGACGGCAAAGACG 60.082 57.895 0.00 0.00 41.40 4.18
2255 2877 1.725973 GCAAAGACGGCAAAGACGC 60.726 57.895 0.00 0.00 37.73 5.19
2256 2878 1.646540 CAAAGACGGCAAAGACGCA 59.353 52.632 0.00 0.00 37.73 5.24
2257 2879 0.384725 CAAAGACGGCAAAGACGCAG 60.385 55.000 0.00 0.00 37.73 5.18
2258 2880 0.531974 AAAGACGGCAAAGACGCAGA 60.532 50.000 0.00 0.00 37.73 4.26
2259 2881 0.946221 AAGACGGCAAAGACGCAGAG 60.946 55.000 0.00 0.00 37.73 3.35
2328 2950 2.357517 AAGCTCAACGACCGCCTG 60.358 61.111 0.00 0.00 0.00 4.85
2334 2956 0.104487 TCAACGACCGCCTGTACAAA 59.896 50.000 0.00 0.00 0.00 2.83
2361 2983 0.909623 CCCTCGTCCCCAACATTACT 59.090 55.000 0.00 0.00 0.00 2.24
2377 2999 9.193133 CCAACATTACTAAGGTAATCACTATCG 57.807 37.037 0.00 0.00 44.11 2.92
2464 3110 2.512286 AGCGCGTGGATCCATGTG 60.512 61.111 33.97 33.97 43.87 3.21
2925 3571 1.443872 CGTCCTCAACGTCTTCCGG 60.444 63.158 0.00 0.00 46.42 5.14
2978 3640 1.381928 CCATTGCTGTAGCCTGCTGG 61.382 60.000 5.03 5.03 41.18 4.85
2979 3641 0.393402 CATTGCTGTAGCCTGCTGGA 60.393 55.000 14.77 0.00 41.18 3.86
2980 3642 0.549950 ATTGCTGTAGCCTGCTGGAT 59.450 50.000 14.77 10.15 41.18 3.41
3102 3764 4.603946 GGAGATGTACGGCGGGGC 62.604 72.222 13.24 0.70 0.00 5.80
3363 4125 0.179081 GGGTTCCCTCTCCGATTTCG 60.179 60.000 0.00 0.00 39.44 3.46
3368 4130 4.439968 GTTCCCTCTCCGATTTCGTTAAT 58.560 43.478 0.00 0.00 37.74 1.40
3386 4148 6.037098 CGTTAATGAAACCAAAGACAACCAA 58.963 36.000 0.00 0.00 34.33 3.67
3387 4149 6.531948 CGTTAATGAAACCAAAGACAACCAAA 59.468 34.615 0.00 0.00 34.33 3.28
3394 4156 4.345854 ACCAAAGACAACCAAAACTACCA 58.654 39.130 0.00 0.00 0.00 3.25
3395 4157 4.401202 ACCAAAGACAACCAAAACTACCAG 59.599 41.667 0.00 0.00 0.00 4.00
3398 4164 2.512476 AGACAACCAAAACTACCAGGGT 59.488 45.455 0.00 0.00 0.00 4.34
3401 4167 3.702548 ACAACCAAAACTACCAGGGTTTC 59.297 43.478 0.00 0.00 39.71 2.78
3420 4186 7.412853 GGTTTCCCCTGCTTTACATATAAAA 57.587 36.000 0.00 0.00 29.82 1.52
3430 4196 9.638239 CTGCTTTACATATAAAACAACCAACAT 57.362 29.630 0.00 0.00 28.47 2.71
3442 4208 5.734855 ACAACCAACATCGATTACATAGC 57.265 39.130 0.00 0.00 0.00 2.97
3447 4213 4.270084 CCAACATCGATTACATAGCAACGT 59.730 41.667 0.00 0.00 0.00 3.99
3450 4216 4.270084 ACATCGATTACATAGCAACGTTGG 59.730 41.667 28.33 14.70 0.00 3.77
3469 4235 4.047834 CGAGCAGCACACCAAGAA 57.952 55.556 0.00 0.00 0.00 2.52
3470 4236 2.320215 CGAGCAGCACACCAAGAAA 58.680 52.632 0.00 0.00 0.00 2.52
3471 4237 0.236711 CGAGCAGCACACCAAGAAAG 59.763 55.000 0.00 0.00 0.00 2.62
3472 4238 1.597742 GAGCAGCACACCAAGAAAGA 58.402 50.000 0.00 0.00 0.00 2.52
3473 4239 1.949525 GAGCAGCACACCAAGAAAGAA 59.050 47.619 0.00 0.00 0.00 2.52
3474 4240 2.358898 GAGCAGCACACCAAGAAAGAAA 59.641 45.455 0.00 0.00 0.00 2.52
3475 4241 2.099756 AGCAGCACACCAAGAAAGAAAC 59.900 45.455 0.00 0.00 0.00 2.78
3476 4242 2.719798 CAGCACACCAAGAAAGAAACG 58.280 47.619 0.00 0.00 0.00 3.60
3477 4243 2.354510 CAGCACACCAAGAAAGAAACGA 59.645 45.455 0.00 0.00 0.00 3.85
3478 4244 2.614057 AGCACACCAAGAAAGAAACGAG 59.386 45.455 0.00 0.00 0.00 4.18
3479 4245 2.612212 GCACACCAAGAAAGAAACGAGA 59.388 45.455 0.00 0.00 0.00 4.04
3480 4246 3.064820 GCACACCAAGAAAGAAACGAGAA 59.935 43.478 0.00 0.00 0.00 2.87
3481 4247 4.438200 GCACACCAAGAAAGAAACGAGAAA 60.438 41.667 0.00 0.00 0.00 2.52
3482 4248 5.266242 CACACCAAGAAAGAAACGAGAAAG 58.734 41.667 0.00 0.00 0.00 2.62
3483 4249 5.064707 CACACCAAGAAAGAAACGAGAAAGA 59.935 40.000 0.00 0.00 0.00 2.52
3484 4250 5.646360 ACACCAAGAAAGAAACGAGAAAGAA 59.354 36.000 0.00 0.00 0.00 2.52
3485 4251 6.150474 ACACCAAGAAAGAAACGAGAAAGAAA 59.850 34.615 0.00 0.00 0.00 2.52
3486 4252 6.688813 CACCAAGAAAGAAACGAGAAAGAAAG 59.311 38.462 0.00 0.00 0.00 2.62
3487 4253 6.598064 ACCAAGAAAGAAACGAGAAAGAAAGA 59.402 34.615 0.00 0.00 0.00 2.52
3488 4254 7.120726 ACCAAGAAAGAAACGAGAAAGAAAGAA 59.879 33.333 0.00 0.00 0.00 2.52
3489 4255 7.429630 CCAAGAAAGAAACGAGAAAGAAAGAAC 59.570 37.037 0.00 0.00 0.00 3.01
3490 4256 7.611213 AGAAAGAAACGAGAAAGAAAGAACA 57.389 32.000 0.00 0.00 0.00 3.18
3491 4257 8.040716 AGAAAGAAACGAGAAAGAAAGAACAA 57.959 30.769 0.00 0.00 0.00 2.83
3492 4258 8.512138 AGAAAGAAACGAGAAAGAAAGAACAAA 58.488 29.630 0.00 0.00 0.00 2.83
3493 4259 9.124807 GAAAGAAACGAGAAAGAAAGAACAAAA 57.875 29.630 0.00 0.00 0.00 2.44
3494 4260 9.471084 AAAGAAACGAGAAAGAAAGAACAAAAA 57.529 25.926 0.00 0.00 0.00 1.94
3495 4261 8.675040 AGAAACGAGAAAGAAAGAACAAAAAG 57.325 30.769 0.00 0.00 0.00 2.27
3496 4262 8.512138 AGAAACGAGAAAGAAAGAACAAAAAGA 58.488 29.630 0.00 0.00 0.00 2.52
3497 4263 9.124807 GAAACGAGAAAGAAAGAACAAAAAGAA 57.875 29.630 0.00 0.00 0.00 2.52
3498 4264 9.471084 AAACGAGAAAGAAAGAACAAAAAGAAA 57.529 25.926 0.00 0.00 0.00 2.52
3499 4265 8.449085 ACGAGAAAGAAAGAACAAAAAGAAAC 57.551 30.769 0.00 0.00 0.00 2.78
3500 4266 8.079809 ACGAGAAAGAAAGAACAAAAAGAAACA 58.920 29.630 0.00 0.00 0.00 2.83
3501 4267 8.911662 CGAGAAAGAAAGAACAAAAAGAAACAA 58.088 29.630 0.00 0.00 0.00 2.83
3505 4271 9.611284 AAAGAAAGAACAAAAAGAAACAAATGC 57.389 25.926 0.00 0.00 0.00 3.56
3506 4272 7.751732 AGAAAGAACAAAAAGAAACAAATGCC 58.248 30.769 0.00 0.00 0.00 4.40
3507 4273 7.390162 AGAAAGAACAAAAAGAAACAAATGCCA 59.610 29.630 0.00 0.00 0.00 4.92
3508 4274 7.446001 AAGAACAAAAAGAAACAAATGCCAA 57.554 28.000 0.00 0.00 0.00 4.52
3509 4275 6.841119 AGAACAAAAAGAAACAAATGCCAAC 58.159 32.000 0.00 0.00 0.00 3.77
3510 4276 6.429385 AGAACAAAAAGAAACAAATGCCAACA 59.571 30.769 0.00 0.00 0.00 3.33
3511 4277 6.566197 ACAAAAAGAAACAAATGCCAACAA 57.434 29.167 0.00 0.00 0.00 2.83
3512 4278 6.377780 ACAAAAAGAAACAAATGCCAACAAC 58.622 32.000 0.00 0.00 0.00 3.32
3513 4279 6.016777 ACAAAAAGAAACAAATGCCAACAACA 60.017 30.769 0.00 0.00 0.00 3.33
3514 4280 5.799681 AAAGAAACAAATGCCAACAACAG 57.200 34.783 0.00 0.00 0.00 3.16
3515 4281 3.197265 AGAAACAAATGCCAACAACAGC 58.803 40.909 0.00 0.00 0.00 4.40
3516 4282 2.687700 AACAAATGCCAACAACAGCA 57.312 40.000 0.00 0.00 44.45 4.41
3517 4283 2.228138 ACAAATGCCAACAACAGCAG 57.772 45.000 0.00 0.00 43.38 4.24
3518 4284 0.863144 CAAATGCCAACAACAGCAGC 59.137 50.000 0.00 0.00 43.38 5.25
3519 4285 0.464870 AAATGCCAACAACAGCAGCA 59.535 45.000 0.00 0.00 43.38 4.41
3520 4286 0.249573 AATGCCAACAACAGCAGCAC 60.250 50.000 0.00 0.00 43.38 4.40
3521 4287 2.353839 GCCAACAACAGCAGCACG 60.354 61.111 0.00 0.00 0.00 5.34
3522 4288 2.833533 GCCAACAACAGCAGCACGA 61.834 57.895 0.00 0.00 0.00 4.35
3523 4289 1.009675 CCAACAACAGCAGCACGAC 60.010 57.895 0.00 0.00 0.00 4.34
3524 4290 1.713937 CCAACAACAGCAGCACGACA 61.714 55.000 0.00 0.00 0.00 4.35
3525 4291 0.098552 CAACAACAGCAGCACGACAA 59.901 50.000 0.00 0.00 0.00 3.18
3526 4292 0.808125 AACAACAGCAGCACGACAAA 59.192 45.000 0.00 0.00 0.00 2.83
3527 4293 0.808125 ACAACAGCAGCACGACAAAA 59.192 45.000 0.00 0.00 0.00 2.44
3528 4294 1.191096 CAACAGCAGCACGACAAAAC 58.809 50.000 0.00 0.00 0.00 2.43
3529 4295 0.248054 AACAGCAGCACGACAAAACG 60.248 50.000 0.00 0.00 39.31 3.60
3538 4304 1.223187 ACGACAAAACGTGGATGACC 58.777 50.000 0.00 0.00 44.84 4.02
3539 4305 0.515564 CGACAAAACGTGGATGACCC 59.484 55.000 0.00 0.00 34.81 4.46
3540 4306 0.515564 GACAAAACGTGGATGACCCG 59.484 55.000 0.00 0.00 37.93 5.28
3541 4307 1.209127 CAAAACGTGGATGACCCGC 59.791 57.895 0.00 0.00 42.03 6.13
3542 4308 1.969589 AAAACGTGGATGACCCGCC 60.970 57.895 0.00 0.00 42.48 6.13
3543 4309 2.684192 AAAACGTGGATGACCCGCCA 62.684 55.000 0.00 0.00 42.48 5.69
3561 4327 3.933722 CCGCTGCATCCTCCGGAT 61.934 66.667 3.57 0.00 44.21 4.18
3562 4328 2.109799 CGCTGCATCCTCCGGATT 59.890 61.111 3.57 0.00 39.79 3.01
3563 4329 1.958205 CGCTGCATCCTCCGGATTC 60.958 63.158 3.57 0.00 39.79 2.52
3564 4330 1.146930 GCTGCATCCTCCGGATTCA 59.853 57.895 3.57 0.00 39.79 2.57
3565 4331 0.250640 GCTGCATCCTCCGGATTCAT 60.251 55.000 3.57 0.00 39.79 2.57
3566 4332 1.805869 CTGCATCCTCCGGATTCATC 58.194 55.000 3.57 0.00 39.79 2.92
3567 4333 0.397941 TGCATCCTCCGGATTCATCC 59.602 55.000 3.57 0.00 39.79 3.51
3568 4334 0.322008 GCATCCTCCGGATTCATCCC 60.322 60.000 3.57 0.00 39.79 3.85
3569 4335 1.059098 CATCCTCCGGATTCATCCCA 58.941 55.000 3.57 0.00 39.79 4.37
3570 4336 1.059913 ATCCTCCGGATTCATCCCAC 58.940 55.000 3.57 0.00 39.79 4.61
3571 4337 1.054406 TCCTCCGGATTCATCCCACC 61.054 60.000 3.57 0.00 44.24 4.61
3572 4338 1.344953 CCTCCGGATTCATCCCACCA 61.345 60.000 3.57 0.00 44.24 4.17
3573 4339 0.179045 CTCCGGATTCATCCCACCAC 60.179 60.000 3.57 0.00 44.24 4.16
3574 4340 1.152963 CCGGATTCATCCCACCACC 60.153 63.158 0.00 0.00 44.24 4.61
3575 4341 1.523711 CGGATTCATCCCACCACCG 60.524 63.158 0.00 0.00 44.24 4.94
3576 4342 1.823899 GGATTCATCCCACCACCGC 60.824 63.158 0.00 0.00 41.20 5.68
3577 4343 1.823899 GATTCATCCCACCACCGCC 60.824 63.158 0.00 0.00 0.00 6.13
3578 4344 3.358932 ATTCATCCCACCACCGCCC 62.359 63.158 0.00 0.00 0.00 6.13
3580 4346 4.358841 CATCCCACCACCGCCCAA 62.359 66.667 0.00 0.00 0.00 4.12
3581 4347 4.047125 ATCCCACCACCGCCCAAG 62.047 66.667 0.00 0.00 0.00 3.61
3584 4350 4.047125 CCACCACCGCCCAAGGAT 62.047 66.667 0.00 0.00 34.73 3.24
3585 4351 2.438434 CACCACCGCCCAAGGATC 60.438 66.667 0.00 0.00 34.73 3.36
3586 4352 2.610859 ACCACCGCCCAAGGATCT 60.611 61.111 0.00 0.00 34.73 2.75
3587 4353 2.124570 CCACCGCCCAAGGATCTG 60.125 66.667 0.00 0.00 34.73 2.90
3588 4354 2.825836 CACCGCCCAAGGATCTGC 60.826 66.667 0.00 0.00 34.73 4.26
3589 4355 3.329889 ACCGCCCAAGGATCTGCA 61.330 61.111 0.00 0.00 34.73 4.41
3590 4356 2.825836 CCGCCCAAGGATCTGCAC 60.826 66.667 0.00 0.00 0.00 4.57
3591 4357 2.825836 CGCCCAAGGATCTGCACC 60.826 66.667 0.00 0.00 0.00 5.01
3592 4358 2.356278 GCCCAAGGATCTGCACCA 59.644 61.111 0.00 0.00 0.00 4.17
3593 4359 2.048603 GCCCAAGGATCTGCACCAC 61.049 63.158 0.00 0.00 0.00 4.16
3594 4360 1.379044 CCCAAGGATCTGCACCACC 60.379 63.158 0.00 0.00 0.00 4.61
3595 4361 1.379916 CCAAGGATCTGCACCACCA 59.620 57.895 0.00 0.00 0.00 4.17
3596 4362 0.033796 CCAAGGATCTGCACCACCAT 60.034 55.000 0.00 0.00 0.00 3.55
3597 4363 1.100510 CAAGGATCTGCACCACCATG 58.899 55.000 0.00 0.00 0.00 3.66
3598 4364 0.033796 AAGGATCTGCACCACCATGG 60.034 55.000 11.19 11.19 45.02 3.66
3599 4365 0.915872 AGGATCTGCACCACCATGGA 60.916 55.000 21.47 0.00 40.96 3.41
3600 4366 0.749454 GGATCTGCACCACCATGGAC 60.749 60.000 21.47 2.60 40.96 4.02
3601 4367 0.749454 GATCTGCACCACCATGGACC 60.749 60.000 21.47 1.85 40.96 4.46
3602 4368 1.499913 ATCTGCACCACCATGGACCA 61.500 55.000 21.47 0.00 40.96 4.02
3603 4369 1.228521 CTGCACCACCATGGACCAA 60.229 57.895 21.47 0.00 40.96 3.67
3604 4370 1.228521 TGCACCACCATGGACCAAG 60.229 57.895 21.47 5.18 40.96 3.61
3605 4371 2.639327 GCACCACCATGGACCAAGC 61.639 63.158 21.47 11.72 40.96 4.01
3606 4372 1.228521 CACCACCATGGACCAAGCA 60.229 57.895 21.47 0.00 40.96 3.91
3607 4373 1.075482 ACCACCATGGACCAAGCAG 59.925 57.895 21.47 0.00 40.96 4.24
3608 4374 2.345760 CCACCATGGACCAAGCAGC 61.346 63.158 21.47 0.00 40.96 5.25
3609 4375 1.604308 CACCATGGACCAAGCAGCA 60.604 57.895 21.47 0.00 0.00 4.41
3610 4376 1.604593 ACCATGGACCAAGCAGCAC 60.605 57.895 21.47 0.00 0.00 4.40
3611 4377 2.345760 CCATGGACCAAGCAGCACC 61.346 63.158 5.56 0.00 0.00 5.01
3612 4378 1.604308 CATGGACCAAGCAGCACCA 60.604 57.895 0.00 0.00 35.09 4.17
3613 4379 1.604593 ATGGACCAAGCAGCACCAC 60.605 57.895 0.00 0.00 33.38 4.16
3614 4380 3.357079 GGACCAAGCAGCACCACG 61.357 66.667 0.00 0.00 0.00 4.94
3615 4381 2.280797 GACCAAGCAGCACCACGA 60.281 61.111 0.00 0.00 0.00 4.35
3616 4382 1.891919 GACCAAGCAGCACCACGAA 60.892 57.895 0.00 0.00 0.00 3.85
3617 4383 1.845809 GACCAAGCAGCACCACGAAG 61.846 60.000 0.00 0.00 0.00 3.79
3618 4384 1.597854 CCAAGCAGCACCACGAAGA 60.598 57.895 0.00 0.00 0.00 2.87
3619 4385 1.165907 CCAAGCAGCACCACGAAGAA 61.166 55.000 0.00 0.00 0.00 2.52
3620 4386 0.236711 CAAGCAGCACCACGAAGAAG 59.763 55.000 0.00 0.00 0.00 2.85
3621 4387 0.886490 AAGCAGCACCACGAAGAAGG 60.886 55.000 0.00 0.00 0.00 3.46
3622 4388 1.301716 GCAGCACCACGAAGAAGGA 60.302 57.895 0.00 0.00 0.00 3.36
3623 4389 0.884704 GCAGCACCACGAAGAAGGAA 60.885 55.000 0.00 0.00 0.00 3.36
3624 4390 1.813513 CAGCACCACGAAGAAGGAAT 58.186 50.000 0.00 0.00 0.00 3.01
3625 4391 1.466167 CAGCACCACGAAGAAGGAATG 59.534 52.381 0.00 0.00 0.00 2.67
3626 4392 0.169009 GCACCACGAAGAAGGAATGC 59.831 55.000 0.00 0.00 0.00 3.56
3627 4393 0.443869 CACCACGAAGAAGGAATGCG 59.556 55.000 0.00 0.00 0.00 4.73
3628 4394 0.320374 ACCACGAAGAAGGAATGCGA 59.680 50.000 0.00 0.00 0.00 5.10
3629 4395 1.066143 ACCACGAAGAAGGAATGCGAT 60.066 47.619 0.00 0.00 0.00 4.58
3630 4396 1.328680 CCACGAAGAAGGAATGCGATG 59.671 52.381 0.00 0.00 0.00 3.84
3631 4397 1.009829 ACGAAGAAGGAATGCGATGC 58.990 50.000 0.00 0.00 0.00 3.91
3632 4398 0.305922 CGAAGAAGGAATGCGATGCC 59.694 55.000 0.00 0.00 0.00 4.40
3633 4399 0.305922 GAAGAAGGAATGCGATGCCG 59.694 55.000 0.00 0.00 39.16 5.69
3634 4400 0.107703 AAGAAGGAATGCGATGCCGA 60.108 50.000 0.00 0.00 38.22 5.54
3635 4401 0.811616 AGAAGGAATGCGATGCCGAC 60.812 55.000 0.00 0.00 38.22 4.79
3636 4402 2.094126 GAAGGAATGCGATGCCGACG 62.094 60.000 0.00 0.00 38.22 5.12
3637 4403 2.572095 AAGGAATGCGATGCCGACGA 62.572 55.000 0.00 0.00 38.22 4.20
3638 4404 2.171079 GGAATGCGATGCCGACGAA 61.171 57.895 0.00 0.00 38.22 3.85
3639 4405 1.273887 GAATGCGATGCCGACGAAG 59.726 57.895 0.00 0.00 38.22 3.79
3640 4406 2.686518 GAATGCGATGCCGACGAAGC 62.687 60.000 0.00 0.00 38.22 3.86
3641 4407 3.723235 ATGCGATGCCGACGAAGCT 62.723 57.895 0.00 0.00 38.22 3.74
3642 4408 3.918220 GCGATGCCGACGAAGCTG 61.918 66.667 0.00 0.00 38.22 4.24
3643 4409 3.918220 CGATGCCGACGAAGCTGC 61.918 66.667 0.00 0.00 38.22 5.25
3644 4410 2.510238 GATGCCGACGAAGCTGCT 60.510 61.111 0.00 0.00 0.00 4.24
3645 4411 2.806856 GATGCCGACGAAGCTGCTG 61.807 63.158 1.35 0.00 0.00 4.41
3648 4414 4.749310 CCGACGAAGCTGCTGCCT 62.749 66.667 12.44 0.00 40.80 4.75
3649 4415 3.485431 CGACGAAGCTGCTGCCTG 61.485 66.667 12.44 4.93 40.80 4.85
3650 4416 3.123620 GACGAAGCTGCTGCCTGG 61.124 66.667 12.44 3.14 40.80 4.45
3651 4417 3.596066 GACGAAGCTGCTGCCTGGA 62.596 63.158 12.44 0.00 40.80 3.86
3652 4418 2.818714 CGAAGCTGCTGCCTGGAG 60.819 66.667 12.44 0.00 40.80 3.86
3653 4419 2.438075 GAAGCTGCTGCCTGGAGG 60.438 66.667 12.44 0.00 40.80 4.30
3654 4420 3.255397 AAGCTGCTGCCTGGAGGT 61.255 61.111 12.44 0.00 46.66 3.85
3655 4421 3.564345 AAGCTGCTGCCTGGAGGTG 62.564 63.158 12.44 0.00 43.96 4.00
3656 4422 4.341783 GCTGCTGCCTGGAGGTGT 62.342 66.667 3.85 0.00 37.57 4.16
3657 4423 2.046507 CTGCTGCCTGGAGGTGTC 60.047 66.667 0.00 0.00 37.57 3.67
3658 4424 3.618780 CTGCTGCCTGGAGGTGTCC 62.619 68.421 0.00 0.00 44.24 4.02
3659 4425 3.325753 GCTGCCTGGAGGTGTCCT 61.326 66.667 0.00 0.00 44.30 3.85
3660 4426 1.990060 GCTGCCTGGAGGTGTCCTA 60.990 63.158 0.00 0.00 44.30 2.94
3661 4427 1.965754 GCTGCCTGGAGGTGTCCTAG 61.966 65.000 0.00 0.00 44.30 3.02
3662 4428 1.306141 TGCCTGGAGGTGTCCTAGG 60.306 63.158 0.82 0.82 44.30 3.02
3663 4429 2.066999 GCCTGGAGGTGTCCTAGGG 61.067 68.421 9.46 0.00 44.30 3.53
3664 4430 1.392534 CCTGGAGGTGTCCTAGGGT 59.607 63.158 9.46 0.00 44.30 4.34
3665 4431 0.252742 CCTGGAGGTGTCCTAGGGTT 60.253 60.000 9.46 0.00 44.30 4.11
3666 4432 1.657804 CTGGAGGTGTCCTAGGGTTT 58.342 55.000 9.46 0.00 44.30 3.27
3667 4433 1.985895 CTGGAGGTGTCCTAGGGTTTT 59.014 52.381 9.46 0.00 44.30 2.43
3668 4434 1.982958 TGGAGGTGTCCTAGGGTTTTC 59.017 52.381 9.46 1.04 44.30 2.29
3669 4435 1.281287 GGAGGTGTCCTAGGGTTTTCC 59.719 57.143 9.46 6.71 40.17 3.13
3679 4445 4.038080 GGTTTTCCCTGGCACGCG 62.038 66.667 3.53 3.53 0.00 6.01
3680 4446 2.975799 GTTTTCCCTGGCACGCGA 60.976 61.111 15.93 0.00 0.00 5.87
3681 4447 2.203224 TTTTCCCTGGCACGCGAA 60.203 55.556 15.93 0.00 0.00 4.70
3682 4448 2.258013 TTTTCCCTGGCACGCGAAG 61.258 57.895 15.93 5.94 0.00 3.79
3683 4449 4.697756 TTCCCTGGCACGCGAAGG 62.698 66.667 15.93 13.80 0.00 3.46
3696 4462 3.732849 GAAGGGGAGTGGGGGCTG 61.733 72.222 0.00 0.00 0.00 4.85
3697 4463 4.285790 AAGGGGAGTGGGGGCTGA 62.286 66.667 0.00 0.00 0.00 4.26
3698 4464 4.748798 AGGGGAGTGGGGGCTGAG 62.749 72.222 0.00 0.00 0.00 3.35
3701 4467 4.416738 GGAGTGGGGGCTGAGCAC 62.417 72.222 6.82 0.74 0.00 4.40
3711 4477 2.821366 CTGAGCACCACCGCCATC 60.821 66.667 0.00 0.00 0.00 3.51
3712 4478 4.408821 TGAGCACCACCGCCATCC 62.409 66.667 0.00 0.00 0.00 3.51
3713 4479 4.101448 GAGCACCACCGCCATCCT 62.101 66.667 0.00 0.00 0.00 3.24
3714 4480 3.628646 GAGCACCACCGCCATCCTT 62.629 63.158 0.00 0.00 0.00 3.36
3715 4481 3.134127 GCACCACCGCCATCCTTC 61.134 66.667 0.00 0.00 0.00 3.46
3716 4482 2.350895 CACCACCGCCATCCTTCA 59.649 61.111 0.00 0.00 0.00 3.02
3717 4483 1.746615 CACCACCGCCATCCTTCAG 60.747 63.158 0.00 0.00 0.00 3.02
3718 4484 2.124570 CCACCGCCATCCTTCAGG 60.125 66.667 0.00 0.00 0.00 3.86
3730 4496 2.785868 CTTCAGGAAGGAATGGCGG 58.214 57.895 1.01 0.00 34.87 6.13
3731 4497 1.378514 TTCAGGAAGGAATGGCGGC 60.379 57.895 0.00 0.00 0.00 6.53
3732 4498 2.045045 CAGGAAGGAATGGCGGCA 60.045 61.111 16.34 16.34 0.00 5.69
3733 4499 2.044946 AGGAAGGAATGGCGGCAC 60.045 61.111 16.34 1.46 0.00 5.01
3734 4500 3.140814 GGAAGGAATGGCGGCACC 61.141 66.667 16.34 12.81 39.84 5.01
3735 4501 3.508840 GAAGGAATGGCGGCACCG 61.509 66.667 16.34 4.30 43.94 4.94
3736 4502 4.344865 AAGGAATGGCGGCACCGT 62.345 61.111 16.34 7.64 43.94 4.83
3739 4505 3.799755 GAATGGCGGCACCGTGTC 61.800 66.667 16.34 3.13 43.94 3.67
3751 4517 4.351938 CGTGTCGGCACCGGAAGA 62.352 66.667 15.72 0.00 42.39 2.87
3752 4518 2.029964 GTGTCGGCACCGGAAGAA 59.970 61.111 9.56 0.00 39.61 2.52
3753 4519 2.029964 TGTCGGCACCGGAAGAAC 59.970 61.111 9.46 0.00 40.25 3.01
3754 4520 2.342648 GTCGGCACCGGAAGAACT 59.657 61.111 9.46 0.00 40.25 3.01
3755 4521 2.027625 GTCGGCACCGGAAGAACTG 61.028 63.158 9.46 0.00 40.25 3.16
3761 4527 2.045926 CCGGAAGAACTGGCAGGG 60.046 66.667 20.34 4.28 38.29 4.45
3762 4528 2.750350 CGGAAGAACTGGCAGGGT 59.250 61.111 20.34 6.01 0.00 4.34
3763 4529 1.073199 CGGAAGAACTGGCAGGGTT 59.927 57.895 20.34 8.69 0.00 4.11
3764 4530 0.537371 CGGAAGAACTGGCAGGGTTT 60.537 55.000 20.34 9.30 0.00 3.27
3765 4531 1.704641 GGAAGAACTGGCAGGGTTTT 58.295 50.000 20.34 7.66 0.00 2.43
3766 4532 1.613925 GGAAGAACTGGCAGGGTTTTC 59.386 52.381 20.34 15.57 0.00 2.29
3767 4533 2.587522 GAAGAACTGGCAGGGTTTTCT 58.412 47.619 20.34 15.11 0.00 2.52
3768 4534 2.278332 AGAACTGGCAGGGTTTTCTC 57.722 50.000 20.34 3.60 0.00 2.87
3769 4535 1.202940 AGAACTGGCAGGGTTTTCTCC 60.203 52.381 20.34 0.00 0.00 3.71
3770 4536 0.555769 AACTGGCAGGGTTTTCTCCA 59.444 50.000 20.34 0.00 0.00 3.86
3795 4561 2.572104 GGTGTAATGAGAACCAGGGTCT 59.428 50.000 6.76 6.76 33.94 3.85
3807 4573 2.653366 ACCAGGGTCTCACTAACCTCTA 59.347 50.000 0.00 0.00 36.97 2.43
3838 4604 1.958205 GACAGTGCTCAGCAACGCT 60.958 57.895 0.00 0.00 41.47 5.07
3868 4634 3.188786 CGCCGGCAAGCACTACTC 61.189 66.667 28.98 0.00 0.00 2.59
3967 4733 0.463295 CTGCCGGGTAGACGAGTCTA 60.463 60.000 6.22 8.74 40.93 2.59
4045 4811 4.986708 GCCAAGCCAAACCCCGGA 62.987 66.667 0.73 0.00 0.00 5.14
4143 4909 2.386661 AGTATTGACCCGACAAGCTG 57.613 50.000 0.00 0.00 33.22 4.24
4188 4954 5.222079 TGCCGGCACTCTATATCAATTAA 57.778 39.130 29.03 0.00 0.00 1.40
4196 4962 6.423905 GCACTCTATATCAATTAAAGGCACGA 59.576 38.462 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.389296 TGGTGACATGCCGTCTAACG 60.389 55.000 0.00 0.00 45.60 3.18
55 56 0.523072 CCAGCCAGGAAATGACGTTG 59.477 55.000 0.00 0.00 41.22 4.10
57 58 2.066340 TCCAGCCAGGAAATGACGT 58.934 52.632 0.00 0.00 45.65 4.34
181 216 0.892755 ATGCAAATGGTGTGGCTCAG 59.107 50.000 0.00 0.00 0.00 3.35
215 250 2.676121 TGCCGGCCACAGATTTGG 60.676 61.111 26.77 0.00 39.98 3.28
229 272 3.447944 AGCTTAACTCCACTACTAGTGCC 59.552 47.826 5.39 0.00 44.63 5.01
250 293 8.466798 CACCCCTGGTTAACTTAATTCATTTAG 58.533 37.037 5.42 0.00 31.02 1.85
336 397 2.354656 GTATCATCGCCGCGCTCA 60.355 61.111 8.21 0.00 0.00 4.26
341 402 3.036084 CACCGGTATCATCGCCGC 61.036 66.667 6.87 0.00 45.98 6.53
480 565 1.669999 GCAGGGGTGTTGCATCATCC 61.670 60.000 17.41 17.41 41.17 3.51
557 654 4.804202 CGGAAAAACGGCGTGTAC 57.196 55.556 15.70 6.00 0.00 2.90
1238 1790 1.815003 CCTACCGTATATCCGTCACCC 59.185 57.143 0.00 0.00 0.00 4.61
1248 1800 4.831155 CCATCTCCAAGAACCTACCGTATA 59.169 45.833 0.00 0.00 0.00 1.47
1255 1807 0.830648 CCGCCATCTCCAAGAACCTA 59.169 55.000 0.00 0.00 0.00 3.08
1276 1828 3.541093 CTCGGCGCTGCAGCAAAAA 62.541 57.895 36.03 18.36 42.21 1.94
1674 2244 2.568623 AGCGATATTTCCCATCACCC 57.431 50.000 0.00 0.00 0.00 4.61
1692 2268 6.594547 GCTCCCTAACTACTTCCAAAACTAAG 59.405 42.308 0.00 0.00 0.00 2.18
1835 2436 2.279120 GCTCCTCGACCATCTGCG 60.279 66.667 0.00 0.00 0.00 5.18
1844 2445 3.086391 GCCATCTGCTGCTCCTCGA 62.086 63.158 0.00 0.00 36.87 4.04
1845 2446 2.588314 GCCATCTGCTGCTCCTCG 60.588 66.667 0.00 0.00 36.87 4.63
2248 2870 1.003233 GCTTCCCCTCTGCGTCTTT 60.003 57.895 0.00 0.00 0.00 2.52
2249 2871 2.665603 GCTTCCCCTCTGCGTCTT 59.334 61.111 0.00 0.00 0.00 3.01
2309 2931 3.119096 GGCGGTCGTTGAGCTTCC 61.119 66.667 0.00 0.00 0.00 3.46
2328 2950 0.108945 CGAGGGACCGGAGTTTGTAC 60.109 60.000 9.46 0.00 0.00 2.90
2334 2956 4.755507 GGGACGAGGGACCGGAGT 62.756 72.222 9.46 0.00 0.00 3.85
2965 3627 2.499289 CCCTATATCCAGCAGGCTACAG 59.501 54.545 0.00 0.00 33.74 2.74
2978 3640 2.354805 GGCCACCGTGAATCCCTATATC 60.355 54.545 0.00 0.00 0.00 1.63
2979 3641 1.628846 GGCCACCGTGAATCCCTATAT 59.371 52.381 0.00 0.00 0.00 0.86
2980 3642 1.053424 GGCCACCGTGAATCCCTATA 58.947 55.000 0.00 0.00 0.00 1.31
3196 3858 2.032528 TGGTGCAGCTGGTAGTGC 59.967 61.111 17.12 0.29 40.29 4.40
3325 4087 6.701841 GGAACCCTCTTTTTCTTTTGCTAAAG 59.298 38.462 13.61 13.61 41.74 1.85
3329 4091 4.672587 GGAACCCTCTTTTTCTTTTGCT 57.327 40.909 0.00 0.00 0.00 3.91
3363 4125 7.835634 TTTGGTTGTCTTTGGTTTCATTAAC 57.164 32.000 0.00 0.00 35.94 2.01
3368 4130 5.476091 AGTTTTGGTTGTCTTTGGTTTCA 57.524 34.783 0.00 0.00 0.00 2.69
3398 4164 8.308207 GTTGTTTTATATGTAAAGCAGGGGAAA 58.692 33.333 10.48 0.00 40.52 3.13
3401 4167 6.153680 TGGTTGTTTTATATGTAAAGCAGGGG 59.846 38.462 10.48 0.00 40.52 4.79
3405 4171 9.632807 GATGTTGGTTGTTTTATATGTAAAGCA 57.367 29.630 7.28 7.28 38.65 3.91
3412 4178 9.995957 TGTAATCGATGTTGGTTGTTTTATATG 57.004 29.630 0.00 0.00 0.00 1.78
3420 4186 5.182487 TGCTATGTAATCGATGTTGGTTGT 58.818 37.500 0.00 0.00 0.00 3.32
3430 4196 3.191669 CCCAACGTTGCTATGTAATCGA 58.808 45.455 22.93 0.00 0.00 3.59
3435 4201 0.246910 TCGCCCAACGTTGCTATGTA 59.753 50.000 22.93 2.70 44.19 2.29
3442 4208 4.389576 GCTGCTCGCCCAACGTTG 62.390 66.667 21.47 21.47 44.19 4.10
3450 4216 3.730761 CTTGGTGTGCTGCTCGCC 61.731 66.667 23.37 23.37 38.05 5.54
3468 4234 9.471084 TTTTTGTTCTTTCTTTCTCGTTTCTTT 57.529 25.926 0.00 0.00 0.00 2.52
3469 4235 9.129209 CTTTTTGTTCTTTCTTTCTCGTTTCTT 57.871 29.630 0.00 0.00 0.00 2.52
3470 4236 8.512138 TCTTTTTGTTCTTTCTTTCTCGTTTCT 58.488 29.630 0.00 0.00 0.00 2.52
3471 4237 8.669394 TCTTTTTGTTCTTTCTTTCTCGTTTC 57.331 30.769 0.00 0.00 0.00 2.78
3472 4238 9.471084 TTTCTTTTTGTTCTTTCTTTCTCGTTT 57.529 25.926 0.00 0.00 0.00 3.60
3473 4239 8.912658 GTTTCTTTTTGTTCTTTCTTTCTCGTT 58.087 29.630 0.00 0.00 0.00 3.85
3474 4240 8.079809 TGTTTCTTTTTGTTCTTTCTTTCTCGT 58.920 29.630 0.00 0.00 0.00 4.18
3475 4241 8.447787 TGTTTCTTTTTGTTCTTTCTTTCTCG 57.552 30.769 0.00 0.00 0.00 4.04
3479 4245 9.611284 GCATTTGTTTCTTTTTGTTCTTTCTTT 57.389 25.926 0.00 0.00 0.00 2.52
3480 4246 8.236586 GGCATTTGTTTCTTTTTGTTCTTTCTT 58.763 29.630 0.00 0.00 0.00 2.52
3481 4247 7.390162 TGGCATTTGTTTCTTTTTGTTCTTTCT 59.610 29.630 0.00 0.00 0.00 2.52
3482 4248 7.525759 TGGCATTTGTTTCTTTTTGTTCTTTC 58.474 30.769 0.00 0.00 0.00 2.62
3483 4249 7.446001 TGGCATTTGTTTCTTTTTGTTCTTT 57.554 28.000 0.00 0.00 0.00 2.52
3484 4250 7.040823 TGTTGGCATTTGTTTCTTTTTGTTCTT 60.041 29.630 0.00 0.00 0.00 2.52
3485 4251 6.429385 TGTTGGCATTTGTTTCTTTTTGTTCT 59.571 30.769 0.00 0.00 0.00 3.01
3486 4252 6.606768 TGTTGGCATTTGTTTCTTTTTGTTC 58.393 32.000 0.00 0.00 0.00 3.18
3487 4253 6.566197 TGTTGGCATTTGTTTCTTTTTGTT 57.434 29.167 0.00 0.00 0.00 2.83
3488 4254 6.016777 TGTTGTTGGCATTTGTTTCTTTTTGT 60.017 30.769 0.00 0.00 0.00 2.83
3489 4255 6.376978 TGTTGTTGGCATTTGTTTCTTTTTG 58.623 32.000 0.00 0.00 0.00 2.44
3490 4256 6.566197 TGTTGTTGGCATTTGTTTCTTTTT 57.434 29.167 0.00 0.00 0.00 1.94
3491 4257 5.391843 GCTGTTGTTGGCATTTGTTTCTTTT 60.392 36.000 0.00 0.00 0.00 2.27
3492 4258 4.094739 GCTGTTGTTGGCATTTGTTTCTTT 59.905 37.500 0.00 0.00 0.00 2.52
3493 4259 3.622612 GCTGTTGTTGGCATTTGTTTCTT 59.377 39.130 0.00 0.00 0.00 2.52
3494 4260 3.197265 GCTGTTGTTGGCATTTGTTTCT 58.803 40.909 0.00 0.00 0.00 2.52
3495 4261 2.935201 TGCTGTTGTTGGCATTTGTTTC 59.065 40.909 0.00 0.00 33.23 2.78
3496 4262 2.937799 CTGCTGTTGTTGGCATTTGTTT 59.062 40.909 0.00 0.00 37.83 2.83
3497 4263 2.553086 CTGCTGTTGTTGGCATTTGTT 58.447 42.857 0.00 0.00 37.83 2.83
3498 4264 1.807377 GCTGCTGTTGTTGGCATTTGT 60.807 47.619 0.00 0.00 37.83 2.83
3499 4265 0.863144 GCTGCTGTTGTTGGCATTTG 59.137 50.000 0.00 0.00 37.83 2.32
3500 4266 0.464870 TGCTGCTGTTGTTGGCATTT 59.535 45.000 0.00 0.00 37.83 2.32
3501 4267 0.249573 GTGCTGCTGTTGTTGGCATT 60.250 50.000 0.00 0.00 37.83 3.56
3502 4268 1.364901 GTGCTGCTGTTGTTGGCAT 59.635 52.632 0.00 0.00 37.83 4.40
3503 4269 2.806929 GTGCTGCTGTTGTTGGCA 59.193 55.556 0.00 0.00 36.94 4.92
3504 4270 2.353839 CGTGCTGCTGTTGTTGGC 60.354 61.111 0.00 0.00 0.00 4.52
3505 4271 1.009675 GTCGTGCTGCTGTTGTTGG 60.010 57.895 0.00 0.00 0.00 3.77
3506 4272 0.098552 TTGTCGTGCTGCTGTTGTTG 59.901 50.000 0.00 0.00 0.00 3.33
3507 4273 0.808125 TTTGTCGTGCTGCTGTTGTT 59.192 45.000 0.00 0.00 0.00 2.83
3508 4274 0.808125 TTTTGTCGTGCTGCTGTTGT 59.192 45.000 0.00 0.00 0.00 3.32
3509 4275 1.191096 GTTTTGTCGTGCTGCTGTTG 58.809 50.000 0.00 0.00 0.00 3.33
3510 4276 0.248054 CGTTTTGTCGTGCTGCTGTT 60.248 50.000 0.00 0.00 0.00 3.16
3511 4277 1.351707 CGTTTTGTCGTGCTGCTGT 59.648 52.632 0.00 0.00 0.00 4.40
3512 4278 1.351707 ACGTTTTGTCGTGCTGCTG 59.648 52.632 0.00 0.00 42.56 4.41
3513 4279 3.808036 ACGTTTTGTCGTGCTGCT 58.192 50.000 0.00 0.00 42.56 4.24
3519 4285 1.223187 GGTCATCCACGTTTTGTCGT 58.777 50.000 0.00 0.00 45.10 4.34
3520 4286 0.515564 GGGTCATCCACGTTTTGTCG 59.484 55.000 0.00 0.00 35.00 4.35
3521 4287 0.515564 CGGGTCATCCACGTTTTGTC 59.484 55.000 0.00 0.00 34.36 3.18
3522 4288 1.512156 GCGGGTCATCCACGTTTTGT 61.512 55.000 0.00 0.00 34.36 2.83
3523 4289 1.209127 GCGGGTCATCCACGTTTTG 59.791 57.895 0.00 0.00 34.36 2.44
3524 4290 1.969589 GGCGGGTCATCCACGTTTT 60.970 57.895 0.00 0.00 34.36 2.43
3525 4291 2.359478 GGCGGGTCATCCACGTTT 60.359 61.111 0.00 0.00 34.36 3.60
3526 4292 3.632080 TGGCGGGTCATCCACGTT 61.632 61.111 0.00 0.00 34.36 3.99
3527 4293 4.388499 GTGGCGGGTCATCCACGT 62.388 66.667 0.00 0.00 42.67 4.49
3558 4324 1.823899 GCGGTGGTGGGATGAATCC 60.824 63.158 0.26 0.26 46.41 3.01
3559 4325 1.823899 GGCGGTGGTGGGATGAATC 60.824 63.158 0.00 0.00 0.00 2.52
3560 4326 2.275418 GGCGGTGGTGGGATGAAT 59.725 61.111 0.00 0.00 0.00 2.57
3561 4327 4.041762 GGGCGGTGGTGGGATGAA 62.042 66.667 0.00 0.00 0.00 2.57
3563 4329 4.358841 TTGGGCGGTGGTGGGATG 62.359 66.667 0.00 0.00 0.00 3.51
3564 4330 4.047125 CTTGGGCGGTGGTGGGAT 62.047 66.667 0.00 0.00 0.00 3.85
3567 4333 3.995506 GATCCTTGGGCGGTGGTGG 62.996 68.421 0.00 0.00 0.00 4.61
3568 4334 2.438434 GATCCTTGGGCGGTGGTG 60.438 66.667 0.00 0.00 0.00 4.17
3569 4335 2.610859 AGATCCTTGGGCGGTGGT 60.611 61.111 0.00 0.00 0.00 4.16
3570 4336 2.124570 CAGATCCTTGGGCGGTGG 60.125 66.667 0.00 0.00 0.00 4.61
3571 4337 2.825836 GCAGATCCTTGGGCGGTG 60.826 66.667 0.00 0.00 0.00 4.94
3572 4338 3.329889 TGCAGATCCTTGGGCGGT 61.330 61.111 0.00 0.00 0.00 5.68
3573 4339 2.825836 GTGCAGATCCTTGGGCGG 60.826 66.667 0.00 0.00 0.00 6.13
3574 4340 2.825836 GGTGCAGATCCTTGGGCG 60.826 66.667 0.00 0.00 0.00 6.13
3575 4341 2.048603 GTGGTGCAGATCCTTGGGC 61.049 63.158 0.00 0.00 0.00 5.36
3576 4342 1.379044 GGTGGTGCAGATCCTTGGG 60.379 63.158 0.00 0.00 0.00 4.12
3577 4343 0.033796 ATGGTGGTGCAGATCCTTGG 60.034 55.000 0.00 0.00 0.00 3.61
3578 4344 1.100510 CATGGTGGTGCAGATCCTTG 58.899 55.000 0.00 0.00 0.00 3.61
3579 4345 0.033796 CCATGGTGGTGCAGATCCTT 60.034 55.000 2.57 0.00 31.35 3.36
3580 4346 0.915872 TCCATGGTGGTGCAGATCCT 60.916 55.000 12.58 0.00 39.03 3.24
3581 4347 0.749454 GTCCATGGTGGTGCAGATCC 60.749 60.000 12.58 0.00 39.03 3.36
3582 4348 0.749454 GGTCCATGGTGGTGCAGATC 60.749 60.000 12.58 0.00 39.03 2.75
3583 4349 1.304282 GGTCCATGGTGGTGCAGAT 59.696 57.895 12.58 0.00 39.03 2.90
3584 4350 1.714011 TTGGTCCATGGTGGTGCAGA 61.714 55.000 12.58 0.00 39.03 4.26
3585 4351 1.228521 TTGGTCCATGGTGGTGCAG 60.229 57.895 12.58 0.00 39.03 4.41
3586 4352 1.228521 CTTGGTCCATGGTGGTGCA 60.229 57.895 12.58 0.00 39.03 4.57
3587 4353 2.639327 GCTTGGTCCATGGTGGTGC 61.639 63.158 12.58 7.61 39.03 5.01
3588 4354 1.228521 TGCTTGGTCCATGGTGGTG 60.229 57.895 12.58 1.09 39.03 4.17
3589 4355 1.075482 CTGCTTGGTCCATGGTGGT 59.925 57.895 12.58 0.00 39.03 4.16
3590 4356 2.345760 GCTGCTTGGTCCATGGTGG 61.346 63.158 12.58 0.03 39.43 4.61
3591 4357 1.604308 TGCTGCTTGGTCCATGGTG 60.604 57.895 12.58 0.00 0.00 4.17
3592 4358 1.604593 GTGCTGCTTGGTCCATGGT 60.605 57.895 12.58 0.00 0.00 3.55
3593 4359 2.345760 GGTGCTGCTTGGTCCATGG 61.346 63.158 4.97 4.97 0.00 3.66
3594 4360 1.604308 TGGTGCTGCTTGGTCCATG 60.604 57.895 0.00 0.00 0.00 3.66
3595 4361 1.604593 GTGGTGCTGCTTGGTCCAT 60.605 57.895 0.00 0.00 0.00 3.41
3596 4362 2.203337 GTGGTGCTGCTTGGTCCA 60.203 61.111 0.00 0.00 0.00 4.02
3597 4363 3.357079 CGTGGTGCTGCTTGGTCC 61.357 66.667 0.00 0.00 0.00 4.46
3598 4364 1.845809 CTTCGTGGTGCTGCTTGGTC 61.846 60.000 0.00 0.00 0.00 4.02
3599 4365 1.893808 CTTCGTGGTGCTGCTTGGT 60.894 57.895 0.00 0.00 0.00 3.67
3600 4366 1.165907 TTCTTCGTGGTGCTGCTTGG 61.166 55.000 0.00 0.00 0.00 3.61
3601 4367 0.236711 CTTCTTCGTGGTGCTGCTTG 59.763 55.000 0.00 0.00 0.00 4.01
3602 4368 0.886490 CCTTCTTCGTGGTGCTGCTT 60.886 55.000 0.00 0.00 0.00 3.91
3603 4369 1.302033 CCTTCTTCGTGGTGCTGCT 60.302 57.895 0.00 0.00 0.00 4.24
3604 4370 0.884704 TTCCTTCTTCGTGGTGCTGC 60.885 55.000 0.00 0.00 0.00 5.25
3605 4371 1.466167 CATTCCTTCTTCGTGGTGCTG 59.534 52.381 0.00 0.00 0.00 4.41
3606 4372 1.813513 CATTCCTTCTTCGTGGTGCT 58.186 50.000 0.00 0.00 0.00 4.40
3607 4373 0.169009 GCATTCCTTCTTCGTGGTGC 59.831 55.000 0.00 0.00 0.00 5.01
3608 4374 0.443869 CGCATTCCTTCTTCGTGGTG 59.556 55.000 0.00 0.00 0.00 4.17
3609 4375 0.320374 TCGCATTCCTTCTTCGTGGT 59.680 50.000 0.00 0.00 0.00 4.16
3610 4376 1.328680 CATCGCATTCCTTCTTCGTGG 59.671 52.381 0.00 0.00 0.00 4.94
3611 4377 1.267732 GCATCGCATTCCTTCTTCGTG 60.268 52.381 0.00 0.00 0.00 4.35
3612 4378 1.009829 GCATCGCATTCCTTCTTCGT 58.990 50.000 0.00 0.00 0.00 3.85
3613 4379 0.305922 GGCATCGCATTCCTTCTTCG 59.694 55.000 0.00 0.00 0.00 3.79
3614 4380 0.305922 CGGCATCGCATTCCTTCTTC 59.694 55.000 0.00 0.00 0.00 2.87
3615 4381 0.107703 TCGGCATCGCATTCCTTCTT 60.108 50.000 0.00 0.00 36.13 2.52
3616 4382 0.811616 GTCGGCATCGCATTCCTTCT 60.812 55.000 0.00 0.00 36.13 2.85
3617 4383 1.643832 GTCGGCATCGCATTCCTTC 59.356 57.895 0.00 0.00 36.13 3.46
3618 4384 2.173669 CGTCGGCATCGCATTCCTT 61.174 57.895 0.00 0.00 36.13 3.36
3619 4385 2.572095 TTCGTCGGCATCGCATTCCT 62.572 55.000 0.00 0.00 36.13 3.36
3620 4386 2.094126 CTTCGTCGGCATCGCATTCC 62.094 60.000 0.00 0.00 36.13 3.01
3621 4387 1.273887 CTTCGTCGGCATCGCATTC 59.726 57.895 0.00 0.00 36.13 2.67
3622 4388 2.813179 GCTTCGTCGGCATCGCATT 61.813 57.895 0.00 0.00 36.13 3.56
3623 4389 3.264897 GCTTCGTCGGCATCGCAT 61.265 61.111 0.00 0.00 36.13 4.73
3624 4390 4.435436 AGCTTCGTCGGCATCGCA 62.435 61.111 0.00 0.00 36.13 5.10
3625 4391 3.918220 CAGCTTCGTCGGCATCGC 61.918 66.667 0.00 0.00 36.13 4.58
3626 4392 3.918220 GCAGCTTCGTCGGCATCG 61.918 66.667 0.00 0.00 37.82 3.84
3627 4393 2.510238 AGCAGCTTCGTCGGCATC 60.510 61.111 0.00 0.00 0.00 3.91
3628 4394 2.816958 CAGCAGCTTCGTCGGCAT 60.817 61.111 0.00 0.00 0.00 4.40
3631 4397 4.749310 AGGCAGCAGCTTCGTCGG 62.749 66.667 0.00 0.00 41.70 4.79
3632 4398 3.485431 CAGGCAGCAGCTTCGTCG 61.485 66.667 0.00 0.00 41.70 5.12
3633 4399 3.123620 CCAGGCAGCAGCTTCGTC 61.124 66.667 0.00 0.00 41.70 4.20
3634 4400 3.602513 CTCCAGGCAGCAGCTTCGT 62.603 63.158 0.00 0.00 41.70 3.85
3635 4401 2.818714 CTCCAGGCAGCAGCTTCG 60.819 66.667 0.00 0.00 41.70 3.79
3636 4402 2.438075 CCTCCAGGCAGCAGCTTC 60.438 66.667 0.00 0.00 41.70 3.86
3637 4403 3.255397 ACCTCCAGGCAGCAGCTT 61.255 61.111 0.00 0.00 41.70 3.74
3638 4404 4.031129 CACCTCCAGGCAGCAGCT 62.031 66.667 0.00 0.00 41.70 4.24
3639 4405 4.341783 ACACCTCCAGGCAGCAGC 62.342 66.667 0.00 0.00 39.32 5.25
3640 4406 2.046507 GACACCTCCAGGCAGCAG 60.047 66.667 0.00 0.00 39.32 4.24
3641 4407 2.746947 TAGGACACCTCCAGGCAGCA 62.747 60.000 0.00 0.00 39.39 4.41
3642 4408 1.965754 CTAGGACACCTCCAGGCAGC 61.966 65.000 0.00 0.00 39.39 5.25
3643 4409 1.333636 CCTAGGACACCTCCAGGCAG 61.334 65.000 1.05 0.00 39.39 4.85
3644 4410 1.306141 CCTAGGACACCTCCAGGCA 60.306 63.158 1.05 0.00 39.39 4.75
3645 4411 2.066999 CCCTAGGACACCTCCAGGC 61.067 68.421 11.48 0.00 39.39 4.85
3646 4412 0.252742 AACCCTAGGACACCTCCAGG 60.253 60.000 11.48 0.00 39.39 4.45
3647 4413 1.657804 AAACCCTAGGACACCTCCAG 58.342 55.000 11.48 0.00 39.39 3.86
3648 4414 1.982958 GAAAACCCTAGGACACCTCCA 59.017 52.381 11.48 0.00 39.39 3.86
3649 4415 1.281287 GGAAAACCCTAGGACACCTCC 59.719 57.143 11.48 5.76 34.61 4.30
3650 4416 1.281287 GGGAAAACCCTAGGACACCTC 59.719 57.143 11.48 0.00 34.61 3.85
3651 4417 1.132168 AGGGAAAACCCTAGGACACCT 60.132 52.381 11.48 5.99 41.63 4.00
3652 4418 1.004394 CAGGGAAAACCCTAGGACACC 59.996 57.143 11.48 6.15 41.63 4.16
3653 4419 1.004394 CCAGGGAAAACCCTAGGACAC 59.996 57.143 11.48 0.00 41.63 3.67
3654 4420 1.368374 CCAGGGAAAACCCTAGGACA 58.632 55.000 11.48 0.00 41.63 4.02
3655 4421 0.034380 GCCAGGGAAAACCCTAGGAC 60.034 60.000 11.48 11.71 41.63 3.85
3656 4422 0.476808 TGCCAGGGAAAACCCTAGGA 60.477 55.000 11.48 8.79 41.63 2.94
3657 4423 0.323451 GTGCCAGGGAAAACCCTAGG 60.323 60.000 7.53 0.06 41.63 3.02
3658 4424 0.676782 CGTGCCAGGGAAAACCCTAG 60.677 60.000 7.53 1.91 41.63 3.02
3659 4425 1.377229 CGTGCCAGGGAAAACCCTA 59.623 57.895 7.53 0.00 41.63 3.53
3660 4426 2.115266 CGTGCCAGGGAAAACCCT 59.885 61.111 1.53 1.53 41.63 4.34
3661 4427 3.680786 GCGTGCCAGGGAAAACCC 61.681 66.667 0.00 0.00 41.63 4.11
3662 4428 4.038080 CGCGTGCCAGGGAAAACC 62.038 66.667 0.00 0.00 40.67 3.27
3663 4429 2.458006 CTTCGCGTGCCAGGGAAAAC 62.458 60.000 5.77 0.00 41.45 2.43
3664 4430 2.203224 TTCGCGTGCCAGGGAAAA 60.203 55.556 5.77 0.00 39.58 2.29
3665 4431 2.668212 CTTCGCGTGCCAGGGAAA 60.668 61.111 5.77 0.00 41.45 3.13
3666 4432 4.697756 CCTTCGCGTGCCAGGGAA 62.698 66.667 5.77 7.56 40.11 3.97
3674 4440 4.760047 CCCACTCCCCTTCGCGTG 62.760 72.222 5.77 0.00 0.00 5.34
3679 4445 3.732849 CAGCCCCCACTCCCCTTC 61.733 72.222 0.00 0.00 0.00 3.46
3680 4446 4.285790 TCAGCCCCCACTCCCCTT 62.286 66.667 0.00 0.00 0.00 3.95
3681 4447 4.748798 CTCAGCCCCCACTCCCCT 62.749 72.222 0.00 0.00 0.00 4.79
3684 4450 4.416738 GTGCTCAGCCCCCACTCC 62.417 72.222 0.00 0.00 0.00 3.85
3685 4451 4.416738 GGTGCTCAGCCCCCACTC 62.417 72.222 0.00 0.00 0.00 3.51
3694 4460 2.821366 GATGGCGGTGGTGCTCAG 60.821 66.667 0.00 0.00 34.52 3.35
3695 4461 4.408821 GGATGGCGGTGGTGCTCA 62.409 66.667 0.00 0.00 34.52 4.26
3696 4462 3.628646 AAGGATGGCGGTGGTGCTC 62.629 63.158 0.00 0.00 34.52 4.26
3697 4463 3.628646 GAAGGATGGCGGTGGTGCT 62.629 63.158 0.00 0.00 34.52 4.40
3698 4464 3.134127 GAAGGATGGCGGTGGTGC 61.134 66.667 0.00 0.00 0.00 5.01
3699 4465 1.746615 CTGAAGGATGGCGGTGGTG 60.747 63.158 0.00 0.00 0.00 4.17
3700 4466 2.671070 CTGAAGGATGGCGGTGGT 59.329 61.111 0.00 0.00 0.00 4.16
3701 4467 2.124570 CCTGAAGGATGGCGGTGG 60.125 66.667 0.00 0.00 37.39 4.61
3702 4468 0.745845 CTTCCTGAAGGATGGCGGTG 60.746 60.000 0.00 0.00 44.98 4.94
3703 4469 1.604378 CTTCCTGAAGGATGGCGGT 59.396 57.895 0.00 0.00 44.98 5.68
3704 4470 4.547859 CTTCCTGAAGGATGGCGG 57.452 61.111 0.00 0.00 44.98 6.13
3712 4478 1.379642 GCCGCCATTCCTTCCTGAAG 61.380 60.000 0.00 0.00 38.14 3.02
3713 4479 1.378514 GCCGCCATTCCTTCCTGAA 60.379 57.895 0.00 0.00 0.00 3.02
3714 4480 2.272146 GCCGCCATTCCTTCCTGA 59.728 61.111 0.00 0.00 0.00 3.86
3715 4481 2.045045 TGCCGCCATTCCTTCCTG 60.045 61.111 0.00 0.00 0.00 3.86
3716 4482 2.044946 GTGCCGCCATTCCTTCCT 60.045 61.111 0.00 0.00 0.00 3.36
3717 4483 3.140814 GGTGCCGCCATTCCTTCC 61.141 66.667 0.00 0.00 37.17 3.46
3718 4484 3.508840 CGGTGCCGCCATTCCTTC 61.509 66.667 0.00 0.00 36.97 3.46
3719 4485 4.344865 ACGGTGCCGCCATTCCTT 62.345 61.111 10.87 0.00 44.19 3.36
3722 4488 3.799755 GACACGGTGCCGCCATTC 61.800 66.667 10.87 0.00 44.19 2.67
3735 4501 2.029964 TTCTTCCGGTGCCGACAC 59.970 61.111 12.71 0.00 46.66 3.67
3736 4502 2.029964 GTTCTTCCGGTGCCGACA 59.970 61.111 12.71 0.00 42.83 4.35
3737 4503 2.027625 CAGTTCTTCCGGTGCCGAC 61.028 63.158 12.71 1.77 42.83 4.79
3738 4504 2.342279 CAGTTCTTCCGGTGCCGA 59.658 61.111 12.71 0.00 42.83 5.54
3739 4505 2.742372 CCAGTTCTTCCGGTGCCG 60.742 66.667 0.00 3.25 39.44 5.69
3740 4506 3.056328 GCCAGTTCTTCCGGTGCC 61.056 66.667 0.00 0.00 0.00 5.01
3741 4507 2.281484 TGCCAGTTCTTCCGGTGC 60.281 61.111 0.00 0.00 0.00 5.01
3742 4508 1.672356 CCTGCCAGTTCTTCCGGTG 60.672 63.158 0.00 0.00 0.00 4.94
3743 4509 2.750350 CCTGCCAGTTCTTCCGGT 59.250 61.111 0.00 0.00 0.00 5.28
3744 4510 2.045926 CCCTGCCAGTTCTTCCGG 60.046 66.667 0.00 0.00 0.00 5.14
3745 4511 0.537371 AAACCCTGCCAGTTCTTCCG 60.537 55.000 0.00 0.00 0.00 4.30
3746 4512 1.613925 GAAAACCCTGCCAGTTCTTCC 59.386 52.381 0.00 0.00 0.00 3.46
3747 4513 2.554462 GAGAAAACCCTGCCAGTTCTTC 59.446 50.000 0.00 0.00 0.00 2.87
3748 4514 2.587522 GAGAAAACCCTGCCAGTTCTT 58.412 47.619 0.00 0.00 0.00 2.52
3749 4515 1.202940 GGAGAAAACCCTGCCAGTTCT 60.203 52.381 0.00 0.00 0.00 3.01
3750 4516 1.248486 GGAGAAAACCCTGCCAGTTC 58.752 55.000 0.00 0.00 0.00 3.01
3751 4517 0.555769 TGGAGAAAACCCTGCCAGTT 59.444 50.000 0.00 0.00 0.00 3.16
3752 4518 0.111253 CTGGAGAAAACCCTGCCAGT 59.889 55.000 0.00 0.00 40.88 4.00
3753 4519 2.952714 CTGGAGAAAACCCTGCCAG 58.047 57.895 0.00 0.00 40.03 4.85
3754 4520 0.110486 GACTGGAGAAAACCCTGCCA 59.890 55.000 0.00 0.00 0.00 4.92
3755 4521 0.955919 CGACTGGAGAAAACCCTGCC 60.956 60.000 0.00 0.00 0.00 4.85
3756 4522 0.955919 CCGACTGGAGAAAACCCTGC 60.956 60.000 0.00 0.00 37.49 4.85
3757 4523 0.396811 ACCGACTGGAGAAAACCCTG 59.603 55.000 0.00 0.00 39.21 4.45
3758 4524 0.396811 CACCGACTGGAGAAAACCCT 59.603 55.000 0.00 0.00 39.21 4.34
3759 4525 0.108019 ACACCGACTGGAGAAAACCC 59.892 55.000 0.00 0.00 39.21 4.11
3760 4526 2.825861 TACACCGACTGGAGAAAACC 57.174 50.000 0.00 0.00 39.21 3.27
3761 4527 4.312443 TCATTACACCGACTGGAGAAAAC 58.688 43.478 0.00 0.00 39.21 2.43
3762 4528 4.282449 TCTCATTACACCGACTGGAGAAAA 59.718 41.667 0.00 0.00 39.21 2.29
3763 4529 3.830178 TCTCATTACACCGACTGGAGAAA 59.170 43.478 0.00 0.00 39.21 2.52
3764 4530 3.427573 TCTCATTACACCGACTGGAGAA 58.572 45.455 0.00 0.00 39.21 2.87
3765 4531 3.081710 TCTCATTACACCGACTGGAGA 57.918 47.619 0.00 0.00 39.21 3.71
3766 4532 3.512680 GTTCTCATTACACCGACTGGAG 58.487 50.000 0.00 0.00 39.21 3.86
3767 4533 2.232941 GGTTCTCATTACACCGACTGGA 59.767 50.000 0.00 0.00 39.21 3.86
3768 4534 2.028476 TGGTTCTCATTACACCGACTGG 60.028 50.000 0.00 0.00 42.84 4.00
3769 4535 3.254060 CTGGTTCTCATTACACCGACTG 58.746 50.000 0.00 0.00 32.71 3.51
3770 4536 2.233922 CCTGGTTCTCATTACACCGACT 59.766 50.000 0.00 0.00 32.71 4.18
3795 4561 3.454812 GGCCCATCTTTAGAGGTTAGTGA 59.545 47.826 0.00 0.00 0.00 3.41
3807 4573 1.843368 CACTGTCATGGCCCATCTTT 58.157 50.000 0.00 0.00 0.00 2.52
3890 4656 1.002257 AGTGTTGATCCATGCCGCA 60.002 52.632 0.00 0.00 0.00 5.69
3967 4733 1.078848 GCATGGTCTTGACTCCGCT 60.079 57.895 0.00 0.00 0.00 5.52
4037 4803 4.029809 CCGAGGCTTTCCGGGGTT 62.030 66.667 0.00 0.00 41.89 4.11
4136 4902 4.927782 TGCCGTTCCGCAGCTTGT 62.928 61.111 0.00 0.00 33.92 3.16
4143 4909 0.943835 AATTTTGCTTGCCGTTCCGC 60.944 50.000 0.00 0.00 0.00 5.54
4188 4954 5.760253 CCTCATTTATCTAATGTCGTGCCTT 59.240 40.000 0.00 0.00 43.41 4.35
4196 4962 6.713903 CCATGCAGTCCTCATTTATCTAATGT 59.286 38.462 0.00 0.00 43.41 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.