Multiple sequence alignment - TraesCS6A01G070000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G070000 chr6A 100.000 3736 0 0 1 3736 38360640 38364375 0.000000e+00 6900.0
1 TraesCS6A01G070000 chr6D 98.067 1707 22 5 737 2436 33424469 33426171 0.000000e+00 2959.0
2 TraesCS6A01G070000 chr6D 95.142 741 27 6 1 737 33423522 33424257 0.000000e+00 1160.0
3 TraesCS6A01G070000 chr6D 82.443 393 43 13 2294 2668 81243921 81243537 1.670000e-83 320.0
4 TraesCS6A01G070000 chr6D 98.496 133 2 0 2423 2555 33434753 33434885 6.240000e-58 235.0
5 TraesCS6A01G070000 chr6B 95.136 1213 43 5 1544 2742 70723267 70724477 0.000000e+00 1899.0
6 TraesCS6A01G070000 chr6B 91.274 997 60 10 2742 3736 70724601 70725572 0.000000e+00 1334.0
7 TraesCS6A01G070000 chr6B 94.103 831 23 14 732 1553 70696987 70697800 0.000000e+00 1240.0
8 TraesCS6A01G070000 chr6B 94.251 661 22 6 60 707 70696110 70696767 0.000000e+00 996.0
9 TraesCS6A01G070000 chr6B 78.698 169 28 7 3229 3393 670299887 670299723 5.100000e-19 106.0
10 TraesCS6A01G070000 chr7D 84.746 118 16 2 3408 3524 206848219 206848103 2.360000e-22 117.0
11 TraesCS6A01G070000 chr1A 88.235 85 9 1 1 84 130836469 130836553 2.370000e-17 100.0
12 TraesCS6A01G070000 chr1A 88.235 85 9 1 1 84 130839459 130839543 2.370000e-17 100.0
13 TraesCS6A01G070000 chr3A 75.974 154 28 8 3155 3304 15608638 15608786 1.860000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G070000 chr6A 38360640 38364375 3735 False 6900.0 6900 100.0000 1 3736 1 chr6A.!!$F1 3735
1 TraesCS6A01G070000 chr6D 33423522 33426171 2649 False 2059.5 2959 96.6045 1 2436 2 chr6D.!!$F2 2435
2 TraesCS6A01G070000 chr6B 70723267 70725572 2305 False 1616.5 1899 93.2050 1544 3736 2 chr6B.!!$F2 2192
3 TraesCS6A01G070000 chr6B 70696110 70697800 1690 False 1118.0 1240 94.1770 60 1553 2 chr6B.!!$F1 1493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 96 0.320771 CAGCCTACACCAGTGGACAC 60.321 60.000 18.40 0.0 34.19 3.67 F
644 652 0.523072 CGGGCTTTGGTCTGTTCATG 59.477 55.000 0.00 0.0 0.00 3.07 F
2620 2878 1.203052 GTCAACAACCATGGCATCAGG 59.797 52.381 13.04 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1655 1899 3.490800 TTGTAGAATACGTACGCTGCA 57.509 42.857 16.72 11.04 46.99 4.41 R
2637 2895 1.980765 AGGAAGCCATTCACTGAGTGA 59.019 47.619 11.93 11.93 41.09 3.41 R
3623 4005 0.108585 ATGGTGGCATACGGATGGAC 59.891 55.000 10.28 0.00 33.26 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 87 3.611766 ACACATCTAACAGCCTACACC 57.388 47.619 0.00 0.00 0.00 4.16
91 96 0.320771 CAGCCTACACCAGTGGACAC 60.321 60.000 18.40 0.00 34.19 3.67
179 185 2.912956 AGGCAAGTCCACTAATCAGGAA 59.087 45.455 0.00 0.00 35.29 3.36
195 201 3.309682 TCAGGAATTTCTTATTCGCTGCG 59.690 43.478 17.25 17.25 31.96 5.18
242 248 5.517770 GGAATACAAAGAGCATGTGAAATGC 59.482 40.000 0.00 0.00 44.85 3.56
303 309 1.966451 CAAACGCCTCACCTCCACC 60.966 63.158 0.00 0.00 0.00 4.61
394 402 1.852965 CCCTCCTTCTCCTCTCTCTCT 59.147 57.143 0.00 0.00 0.00 3.10
395 403 2.158608 CCCTCCTTCTCCTCTCTCTCTC 60.159 59.091 0.00 0.00 0.00 3.20
418 426 2.203042 CCTCTGCTGCTGCTAGGC 60.203 66.667 19.24 3.61 40.48 3.93
422 430 0.904649 TCTGCTGCTGCTAGGCTTAA 59.095 50.000 17.00 0.00 40.48 1.85
561 569 3.000080 GCTTCGGTCTGTTCGTGCG 62.000 63.158 0.00 0.00 0.00 5.34
605 613 2.511600 GTGGGTCGCTCGGAATGG 60.512 66.667 0.00 0.00 0.00 3.16
606 614 3.781307 TGGGTCGCTCGGAATGGG 61.781 66.667 0.00 0.00 0.00 4.00
644 652 0.523072 CGGGCTTTGGTCTGTTCATG 59.477 55.000 0.00 0.00 0.00 3.07
726 745 1.725973 GTTGTTTCTTCTGCGGCGC 60.726 57.895 27.44 27.44 0.00 6.53
904 1147 8.412608 TCTTCACTGATAAGAATTAGCGAAAG 57.587 34.615 0.00 0.00 40.47 2.62
1078 1321 3.425659 TCCAGCGAGCATGAGATAGTAT 58.574 45.455 0.00 0.00 0.00 2.12
1796 2040 3.920412 GGCAAATGCGAAGGTTCTAAAAG 59.080 43.478 0.00 0.00 43.26 2.27
1880 2124 8.957466 CCCCTTTTCTCTTGTTACTAATAAAGG 58.043 37.037 0.00 0.00 39.03 3.11
2528 2772 4.119136 TGGTATGTGATATGTTGTCAGCG 58.881 43.478 0.00 0.00 0.00 5.18
2531 2775 3.326836 TGTGATATGTTGTCAGCGGAA 57.673 42.857 0.00 0.00 0.00 4.30
2559 2804 5.590259 ACTGTTCACATAATCCACTAATGCC 59.410 40.000 0.00 0.00 0.00 4.40
2577 2822 4.054780 TGCCATCGGTTGAGAATACTAC 57.945 45.455 0.00 0.00 0.00 2.73
2620 2878 1.203052 GTCAACAACCATGGCATCAGG 59.797 52.381 13.04 0.00 0.00 3.86
2637 2895 5.415389 GCATCAGGGCCATTATTTTTGTTTT 59.585 36.000 6.18 0.00 0.00 2.43
2640 2898 5.994668 TCAGGGCCATTATTTTTGTTTTCAC 59.005 36.000 6.18 0.00 0.00 3.18
2667 2925 4.095036 GTGAATGGCTTCCTACTTTACAGC 59.905 45.833 0.00 0.00 0.00 4.40
2719 2977 3.120991 GCTTACTACACAAGTGCGTTCTG 60.121 47.826 0.00 0.00 39.39 3.02
2723 2981 0.107897 ACACAAGTGCGTTCTGGACA 60.108 50.000 0.00 0.00 42.22 4.02
2729 2987 0.586802 GTGCGTTCTGGACAAGTTCC 59.413 55.000 0.00 0.00 46.13 3.62
2817 3199 0.982852 CACTATGGTGGAGCCTCCCA 60.983 60.000 8.62 0.00 39.59 4.37
2836 3218 2.421529 CCACTGTAGGGTATTGCTTCCC 60.422 54.545 0.00 0.00 43.71 3.97
2901 3283 6.472016 TGTTGTATAGCATCTTCTTGGACAA 58.528 36.000 0.00 0.00 0.00 3.18
2941 3323 8.041143 ACCATGTGTTTATGTACACCCTATAT 57.959 34.615 0.00 0.00 46.13 0.86
2953 3335 6.540914 TGTACACCCTATATAAGTTTGCTTGC 59.459 38.462 0.00 0.00 36.22 4.01
2957 3339 6.095440 CACCCTATATAAGTTTGCTTGCAACT 59.905 38.462 7.60 6.15 35.94 3.16
2960 3342 8.682710 CCCTATATAAGTTTGCTTGCAACTTTA 58.317 33.333 19.62 15.40 40.83 1.85
2963 3345 6.710692 ATAAGTTTGCTTGCAACTTTATGC 57.289 33.333 19.62 2.79 40.83 3.14
2964 3346 4.326504 AGTTTGCTTGCAACTTTATGCT 57.673 36.364 7.60 0.00 46.54 3.79
2965 3347 4.053295 AGTTTGCTTGCAACTTTATGCTG 58.947 39.130 7.60 0.00 46.54 4.41
2966 3348 3.731652 TTGCTTGCAACTTTATGCTGT 57.268 38.095 3.70 0.00 46.54 4.40
2967 3349 3.731652 TGCTTGCAACTTTATGCTGTT 57.268 38.095 0.00 0.00 46.54 3.16
2968 3350 4.057406 TGCTTGCAACTTTATGCTGTTT 57.943 36.364 0.00 0.00 46.54 2.83
2969 3351 3.803231 TGCTTGCAACTTTATGCTGTTTG 59.197 39.130 0.00 0.00 46.54 2.93
2970 3352 4.050553 GCTTGCAACTTTATGCTGTTTGA 58.949 39.130 0.00 0.00 46.54 2.69
2971 3353 4.507388 GCTTGCAACTTTATGCTGTTTGAA 59.493 37.500 0.00 0.00 46.54 2.69
2972 3354 5.006552 GCTTGCAACTTTATGCTGTTTGAAA 59.993 36.000 0.00 0.00 46.54 2.69
2973 3355 5.964887 TGCAACTTTATGCTGTTTGAAAC 57.035 34.783 0.14 0.14 46.54 2.78
2974 3356 4.502282 TGCAACTTTATGCTGTTTGAAACG 59.498 37.500 3.37 0.00 46.54 3.60
2975 3357 4.502645 GCAACTTTATGCTGTTTGAAACGT 59.497 37.500 3.37 0.00 43.06 3.99
2976 3358 5.005299 GCAACTTTATGCTGTTTGAAACGTT 59.995 36.000 3.37 0.00 43.06 3.99
2977 3359 6.454981 GCAACTTTATGCTGTTTGAAACGTTT 60.455 34.615 14.57 14.57 43.06 3.60
2978 3360 7.452231 CAACTTTATGCTGTTTGAAACGTTTT 58.548 30.769 15.89 0.00 0.00 2.43
2984 3366 6.287107 TGCTGTTTGAAACGTTTTGAAAAA 57.713 29.167 15.89 11.18 0.00 1.94
3032 3414 4.032960 TCCTGGTACAATCTTGCACATT 57.967 40.909 0.00 0.00 38.70 2.71
3053 3435 8.726068 CACATTAATAGGTGATGTGTGTACAAA 58.274 33.333 0.00 0.00 43.39 2.83
3054 3436 8.726988 ACATTAATAGGTGATGTGTGTACAAAC 58.273 33.333 9.40 9.40 40.84 2.93
3055 3437 8.726068 CATTAATAGGTGATGTGTGTACAAACA 58.274 33.333 20.96 20.96 40.84 2.83
3113 3495 1.202200 CGTTTTTCCGGTGTGAAGCAA 60.202 47.619 0.00 0.00 0.00 3.91
3163 3545 0.810648 TGTCCATCGCATTTTGAGGC 59.189 50.000 0.00 0.00 0.00 4.70
3181 3563 4.079844 TGAGGCCTCAATCATATGGTTTGA 60.080 41.667 33.41 16.28 36.53 2.69
3221 3603 2.716424 ACATATGAATGGGGATTCCGGT 59.284 45.455 10.38 0.00 37.43 5.28
3225 3607 1.340600 TGAATGGGGATTCCGGTTCAC 60.341 52.381 0.00 0.36 37.64 3.18
3329 3711 5.630121 TGGGAACTACACATTCACTGAAAT 58.370 37.500 0.00 0.00 30.35 2.17
3330 3712 5.473162 TGGGAACTACACATTCACTGAAATG 59.527 40.000 0.00 0.69 41.46 2.32
3332 3714 6.348540 GGGAACTACACATTCACTGAAATGTC 60.349 42.308 12.91 3.00 45.68 3.06
3333 3715 6.204688 GGAACTACACATTCACTGAAATGTCA 59.795 38.462 12.91 0.00 45.68 3.58
3334 3716 7.094634 GGAACTACACATTCACTGAAATGTCAT 60.095 37.037 12.91 3.77 45.68 3.06
3346 3728 5.048504 ACTGAAATGTCATCATCTTTGCGTT 60.049 36.000 0.00 0.00 32.56 4.84
3374 3756 4.614946 GATGCAATGCAATTCCTTAGGAC 58.385 43.478 13.45 0.00 43.62 3.85
3378 3760 3.627395 ATGCAATTCCTTAGGACGACA 57.373 42.857 0.00 0.00 0.00 4.35
3392 3774 3.334691 GGACGACAATGTCATCCTTTCA 58.665 45.455 19.93 0.00 41.11 2.69
3408 3790 7.347222 TCATCCTTTCACATACATACCCTACTT 59.653 37.037 0.00 0.00 0.00 2.24
3451 3833 3.106986 AAGCCGCCCGCATATGTCT 62.107 57.895 4.29 0.00 41.38 3.41
3487 3869 3.281727 TCCAAGATGGACCTGTATTGC 57.718 47.619 0.00 0.00 42.67 3.56
3488 3870 2.846206 TCCAAGATGGACCTGTATTGCT 59.154 45.455 0.00 0.00 42.67 3.91
3493 3875 0.535335 TGGACCTGTATTGCTCCGTC 59.465 55.000 0.00 0.00 0.00 4.79
3524 3906 1.540146 GGTGCACTTTTTCCCGCAAAT 60.540 47.619 17.98 0.00 35.87 2.32
3537 3919 4.520846 CAAATCTCACGCGCCCGC 62.521 66.667 5.73 1.98 38.22 6.13
3613 3995 1.612463 GGACGAATATCTACCACGCCT 59.388 52.381 0.00 0.00 0.00 5.52
3615 3997 1.269621 ACGAATATCTACCACGCCTGC 60.270 52.381 0.00 0.00 0.00 4.85
3626 4008 3.869272 CGCCTGCTCAATGCGTCC 61.869 66.667 0.00 0.00 46.63 4.79
3627 4009 2.747460 GCCTGCTCAATGCGTCCA 60.747 61.111 0.00 0.00 46.63 4.02
3631 4015 1.769098 CTGCTCAATGCGTCCATCCG 61.769 60.000 0.00 0.00 46.63 4.18
3638 4022 2.038814 ATGCGTCCATCCGTATGCCA 62.039 55.000 0.00 0.00 31.84 4.92
3640 4024 1.594293 CGTCCATCCGTATGCCACC 60.594 63.158 0.00 0.00 0.00 4.61
3649 4033 1.603802 CCGTATGCCACCATTAAGCAG 59.396 52.381 0.00 0.00 40.40 4.24
3667 4051 2.579738 GCTCCCTGACCGAGGAAC 59.420 66.667 0.00 0.00 46.33 3.62
3668 4052 3.020237 GCTCCCTGACCGAGGAACC 62.020 68.421 0.00 0.00 46.33 3.62
3719 4103 0.946221 CGCTTGGCCTCACCGATATC 60.946 60.000 3.32 0.00 43.94 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.529716 AGGGGTTTCTTTCACTTTACCA 57.470 40.909 0.00 0.00 0.00 3.25
179 185 2.458592 GCACGCAGCGAATAAGAAAT 57.541 45.000 24.65 0.00 0.00 2.17
195 201 4.379499 CGAAATTACCTGGGAAGAAAGCAC 60.379 45.833 0.00 0.00 0.00 4.40
242 248 2.079925 GTTCTCAAAGCTAGCCAGTGG 58.920 52.381 12.13 4.20 0.00 4.00
394 402 2.036414 AGCAGCAGAGGAGTCGGA 59.964 61.111 0.00 0.00 0.00 4.55
395 403 2.183811 CAGCAGCAGAGGAGTCGG 59.816 66.667 0.00 0.00 0.00 4.79
592 600 1.366854 GAAACCCCATTCCGAGCGAC 61.367 60.000 0.00 0.00 0.00 5.19
605 613 2.447630 CCCCCAAAACCAGAAACCC 58.552 57.895 0.00 0.00 0.00 4.11
665 673 4.094146 GCAATTTCCTACAGAAGCAGAGAC 59.906 45.833 0.00 0.00 35.40 3.36
726 745 1.815421 CATTTCCGCGTCCCAGGAG 60.815 63.158 4.92 0.00 37.88 3.69
904 1147 1.205055 CTAAGGTCCTCCTCCAACCC 58.795 60.000 0.00 0.00 44.35 4.11
1655 1899 3.490800 TTGTAGAATACGTACGCTGCA 57.509 42.857 16.72 11.04 46.99 4.41
1815 2059 3.495806 GGACAATGTTTTGGGGCATGAAA 60.496 43.478 0.00 0.00 37.15 2.69
1880 2124 3.492102 TGCCCTAGAAGGTCATATTGC 57.508 47.619 0.00 0.00 31.93 3.56
2513 2757 6.037062 CAGTAAATTCCGCTGACAACATATCA 59.963 38.462 0.00 0.00 32.39 2.15
2516 2760 5.242434 ACAGTAAATTCCGCTGACAACATA 58.758 37.500 9.79 0.00 34.60 2.29
2526 2770 6.183360 TGGATTATGTGAACAGTAAATTCCGC 60.183 38.462 0.00 0.00 0.00 5.54
2528 2772 8.281212 AGTGGATTATGTGAACAGTAAATTCC 57.719 34.615 0.00 0.00 0.00 3.01
2559 2804 7.036220 AGTTTCAGTAGTATTCTCAACCGATG 58.964 38.462 0.00 0.00 0.00 3.84
2620 2878 6.705825 ACTGAGTGAAAACAAAAATAATGGCC 59.294 34.615 0.00 0.00 0.00 5.36
2637 2895 1.980765 AGGAAGCCATTCACTGAGTGA 59.019 47.619 11.93 11.93 41.09 3.41
2640 2898 3.902881 AGTAGGAAGCCATTCACTGAG 57.097 47.619 0.00 0.00 37.15 3.35
2652 2910 5.351740 GCAACTAAGGCTGTAAAGTAGGAAG 59.648 44.000 0.00 0.00 0.00 3.46
2667 2925 4.787598 CACAAAACTAGCAGCAACTAAGG 58.212 43.478 0.00 0.00 0.00 2.69
2723 2981 3.230976 GGGGAAACATCAGTTGGAACTT 58.769 45.455 0.00 0.00 38.17 2.66
2729 2987 2.440409 CTCTGGGGGAAACATCAGTTG 58.560 52.381 0.00 0.00 38.17 3.16
2732 2990 1.289160 TCCTCTGGGGGAAACATCAG 58.711 55.000 0.00 0.00 35.33 2.90
2817 3199 1.485066 CGGGAAGCAATACCCTACAGT 59.515 52.381 0.00 0.00 43.57 3.55
2836 3218 9.922305 GAACAAGATGAAATTATTACCTCTTCG 57.078 33.333 0.00 0.00 0.00 3.79
2901 3283 5.819991 ACACATGGTTATCTGGATCTTTGT 58.180 37.500 0.00 0.00 0.00 2.83
2941 3323 5.691305 CAGCATAAAGTTGCAAGCAAACTTA 59.309 36.000 9.32 10.01 45.23 2.24
2949 3331 6.413269 GTTTCAAACAGCATAAAGTTGCAAG 58.587 36.000 0.00 0.00 45.23 4.01
2950 3332 5.005203 CGTTTCAAACAGCATAAAGTTGCAA 59.995 36.000 0.22 0.00 45.23 4.08
2953 3335 6.567769 AACGTTTCAAACAGCATAAAGTTG 57.432 33.333 0.22 0.00 34.20 3.16
2957 3339 7.582435 TTCAAAACGTTTCAAACAGCATAAA 57.418 28.000 15.01 0.00 0.00 1.40
2960 3342 6.473397 TTTTCAAAACGTTTCAAACAGCAT 57.527 29.167 15.01 0.00 0.00 3.79
2961 3343 5.907197 TTTTCAAAACGTTTCAAACAGCA 57.093 30.435 15.01 0.00 0.00 4.41
2962 3344 7.233689 AGATTTTTCAAAACGTTTCAAACAGC 58.766 30.769 15.01 11.74 0.00 4.40
2963 3345 8.431593 TGAGATTTTTCAAAACGTTTCAAACAG 58.568 29.630 15.01 1.08 0.00 3.16
2964 3346 8.299262 TGAGATTTTTCAAAACGTTTCAAACA 57.701 26.923 15.01 9.84 0.00 2.83
2965 3347 9.249844 CTTGAGATTTTTCAAAACGTTTCAAAC 57.750 29.630 15.01 5.45 36.69 2.93
2966 3348 9.197694 TCTTGAGATTTTTCAAAACGTTTCAAA 57.802 25.926 15.01 13.16 36.69 2.69
2967 3349 8.749841 TCTTGAGATTTTTCAAAACGTTTCAA 57.250 26.923 15.01 9.02 36.69 2.69
2968 3350 8.749841 TTCTTGAGATTTTTCAAAACGTTTCA 57.250 26.923 15.01 0.65 36.69 2.69
2978 3360 9.643693 GCATCCTAATTTTCTTGAGATTTTTCA 57.356 29.630 0.00 0.00 0.00 2.69
3032 3414 7.446769 ACTGTTTGTACACACATCACCTATTA 58.553 34.615 14.89 0.00 33.76 0.98
3082 3464 2.030628 CCGGAAAAACGTACCAGCAAAT 60.031 45.455 0.00 0.00 0.00 2.32
3083 3465 1.334243 CCGGAAAAACGTACCAGCAAA 59.666 47.619 0.00 0.00 0.00 3.68
3094 3476 2.570442 TTGCTTCACACCGGAAAAAC 57.430 45.000 9.46 0.00 0.00 2.43
3113 3495 1.347707 CGGCATGGTCATACAGGGTAT 59.652 52.381 0.00 0.00 0.00 2.73
3150 3532 3.337834 TTGAGGCCTCAAAATGCGA 57.662 47.368 39.82 20.36 45.56 5.10
3163 3545 7.592885 AATCCTTCAAACCATATGATTGAGG 57.407 36.000 18.30 18.30 34.80 3.86
3174 3556 9.540538 TTTTTCCTATGATAATCCTTCAAACCA 57.459 29.630 0.00 0.00 0.00 3.67
3245 3627 0.104487 TACTCGTTCCGCACAAACCA 59.896 50.000 0.00 0.00 0.00 3.67
3307 3689 5.473504 ACATTTCAGTGAATGTGTAGTTCCC 59.526 40.000 17.86 0.00 45.75 3.97
3320 3702 5.391203 CGCAAAGATGATGACATTTCAGTGA 60.391 40.000 0.00 0.00 36.82 3.41
3323 3705 4.978186 ACGCAAAGATGATGACATTTCAG 58.022 39.130 0.00 0.00 36.82 3.02
3329 3711 2.483877 GTCCAACGCAAAGATGATGACA 59.516 45.455 0.00 0.00 0.00 3.58
3330 3712 2.159517 GGTCCAACGCAAAGATGATGAC 60.160 50.000 0.00 0.00 0.00 3.06
3331 3713 2.083774 GGTCCAACGCAAAGATGATGA 58.916 47.619 0.00 0.00 0.00 2.92
3332 3714 1.202065 CGGTCCAACGCAAAGATGATG 60.202 52.381 0.00 0.00 0.00 3.07
3333 3715 1.086696 CGGTCCAACGCAAAGATGAT 58.913 50.000 0.00 0.00 0.00 2.45
3334 3716 0.034198 TCGGTCCAACGCAAAGATGA 59.966 50.000 0.00 0.00 0.00 2.92
3346 3728 1.134753 GAATTGCATTGCATCGGTCCA 59.865 47.619 12.95 0.00 38.76 4.02
3374 3756 4.952262 ATGTGAAAGGATGACATTGTCG 57.048 40.909 11.97 0.00 34.95 4.35
3378 3760 6.772716 GGGTATGTATGTGAAAGGATGACATT 59.227 38.462 0.00 0.00 32.59 2.71
3444 3826 1.269998 GCTTCCGCGGTCTAGACATAT 59.730 52.381 27.15 0.00 0.00 1.78
3451 3833 2.792947 GGATGGCTTCCGCGGTCTA 61.793 63.158 27.15 13.83 33.93 2.59
3499 3881 0.898326 GGGAAAAAGTGCACCCGGAT 60.898 55.000 14.63 0.00 32.73 4.18
3501 3883 3.047735 GGGAAAAAGTGCACCCGG 58.952 61.111 14.63 0.00 32.73 5.73
3506 3888 1.686052 AGATTTGCGGGAAAAAGTGCA 59.314 42.857 0.00 0.00 35.15 4.57
3613 3995 1.815003 CGGATGGACGCATTGAGCA 60.815 57.895 0.00 0.00 46.13 4.26
3615 3997 1.794701 CATACGGATGGACGCATTGAG 59.205 52.381 0.00 0.00 37.37 3.02
3623 4005 0.108585 ATGGTGGCATACGGATGGAC 59.891 55.000 10.28 0.00 33.26 4.02
3625 4007 2.559698 TAATGGTGGCATACGGATGG 57.440 50.000 10.28 0.00 33.26 3.51
3626 4008 2.226437 GCTTAATGGTGGCATACGGATG 59.774 50.000 2.22 2.22 36.02 3.51
3627 4009 2.158682 TGCTTAATGGTGGCATACGGAT 60.159 45.455 0.00 0.00 0.00 4.18
3631 4015 1.338020 GCCTGCTTAATGGTGGCATAC 59.662 52.381 0.00 0.00 42.79 2.39
3638 4022 0.257039 CAGGGAGCCTGCTTAATGGT 59.743 55.000 0.00 0.00 45.13 3.55
3649 4033 2.683933 TTCCTCGGTCAGGGAGCC 60.684 66.667 0.00 0.00 43.67 4.70
3667 4051 2.978010 GTGTGGCACCGGAGTTGG 60.978 66.667 16.26 0.00 0.00 3.77
3668 4052 1.172180 AATGTGTGGCACCGGAGTTG 61.172 55.000 16.26 0.00 32.73 3.16
3699 4083 2.996168 ATATCGGTGAGGCCAAGCGC 62.996 60.000 21.24 0.00 38.37 5.92
3700 4084 0.946221 GATATCGGTGAGGCCAAGCG 60.946 60.000 20.32 20.32 39.78 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.