Multiple sequence alignment - TraesCS6A01G069400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G069400 chr6A 100.000 6260 0 0 1 6260 37455688 37461947 0.000000e+00 11561.0
1 TraesCS6A01G069400 chr6B 92.045 2552 155 29 845 3367 69555825 69558357 0.000000e+00 3544.0
2 TraesCS6A01G069400 chr6B 91.622 752 55 6 3530 4274 69558585 69559335 0.000000e+00 1033.0
3 TraesCS6A01G069400 chr6B 87.101 752 67 19 53 799 69552038 69552764 0.000000e+00 824.0
4 TraesCS6A01G069400 chr6B 88.089 722 45 19 5164 5868 69560175 69560872 0.000000e+00 819.0
5 TraesCS6A01G069400 chr6B 86.207 580 59 12 4429 5000 69559419 69559985 5.370000e-170 608.0
6 TraesCS6A01G069400 chr6B 83.911 404 42 11 5863 6260 69561046 69561432 1.280000e-96 364.0
7 TraesCS6A01G069400 chr6B 98.969 97 1 0 3393 3489 315650208 315650304 2.320000e-39 174.0
8 TraesCS6A01G069400 chr6B 96.970 33 1 0 4273 4305 162173737 162173769 8.770000e-04 56.5
9 TraesCS6A01G069400 chr6D 93.606 2002 99 16 1426 3415 32917199 32919183 0.000000e+00 2961.0
10 TraesCS6A01G069400 chr6D 87.616 1397 95 34 4353 5699 32920269 32921637 0.000000e+00 1550.0
11 TraesCS6A01G069400 chr6D 95.238 756 33 2 3530 4284 32919356 32920109 0.000000e+00 1194.0
12 TraesCS6A01G069400 chr6D 91.089 606 27 7 832 1429 32914058 32914644 0.000000e+00 795.0
13 TraesCS6A01G069400 chr6D 83.886 422 36 14 12 420 32908526 32908928 2.130000e-99 374.0
14 TraesCS6A01G069400 chr6D 88.732 71 6 2 4304 4372 17361825 17361895 1.120000e-12 86.1
15 TraesCS6A01G069400 chr6D 94.872 39 2 0 733 771 32909562 32909600 1.880000e-05 62.1
16 TraesCS6A01G069400 chr5D 91.960 199 16 0 3641 3839 424594961 424595159 4.780000e-71 279.0
17 TraesCS6A01G069400 chr5D 100.000 28 0 0 43 70 418979658 418979685 1.100000e-02 52.8
18 TraesCS6A01G069400 chr3A 98.969 97 1 0 3393 3489 75959576 75959480 2.320000e-39 174.0
19 TraesCS6A01G069400 chr1A 98.000 100 2 0 3393 3492 430006387 430006486 2.320000e-39 174.0
20 TraesCS6A01G069400 chr3D 97.980 99 2 0 3393 3491 613073452 613073354 8.340000e-39 172.0
21 TraesCS6A01G069400 chr3D 95.283 106 5 0 3386 3491 445343057 445342952 1.080000e-37 169.0
22 TraesCS6A01G069400 chr3D 100.000 31 0 0 4273 4303 16992831 16992801 2.440000e-04 58.4
23 TraesCS6A01G069400 chr2A 97.059 102 3 0 3393 3494 240459571 240459672 8.340000e-39 172.0
24 TraesCS6A01G069400 chr2A 100.000 31 0 0 4276 4306 753266076 753266046 2.440000e-04 58.4
25 TraesCS6A01G069400 chr5B 95.327 107 5 0 3385 3491 556139999 556139893 3.000000e-38 171.0
26 TraesCS6A01G069400 chr4B 97.030 101 3 0 3393 3493 193527582 193527682 3.000000e-38 171.0
27 TraesCS6A01G069400 chr4B 96.154 104 4 0 3393 3496 570801938 570801835 3.000000e-38 171.0
28 TraesCS6A01G069400 chr7A 93.103 58 3 1 4304 4360 506603306 506603249 4.020000e-12 84.2
29 TraesCS6A01G069400 chr7B 97.059 34 1 0 4273 4306 176003513 176003480 2.440000e-04 58.4
30 TraesCS6A01G069400 chr4A 100.000 31 0 0 4274 4304 436385976 436385946 2.440000e-04 58.4
31 TraesCS6A01G069400 chr4A 96.970 33 1 0 4274 4306 605085323 605085291 8.770000e-04 56.5
32 TraesCS6A01G069400 chr2B 97.059 34 1 0 4268 4301 357170815 357170848 2.440000e-04 58.4
33 TraesCS6A01G069400 chr1D 96.970 33 1 0 4274 4306 472542589 472542557 8.770000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G069400 chr6A 37455688 37461947 6259 False 11561.000000 11561 100.00000 1 6260 1 chr6A.!!$F1 6259
1 TraesCS6A01G069400 chr6B 69552038 69561432 9394 False 1198.666667 3544 88.16250 53 6260 6 chr6B.!!$F3 6207
2 TraesCS6A01G069400 chr6D 32914058 32921637 7579 False 1625.000000 2961 91.88725 832 5699 4 chr6D.!!$F3 4867
3 TraesCS6A01G069400 chr6D 32908526 32909600 1074 False 218.050000 374 89.37900 12 771 2 chr6D.!!$F2 759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 295 0.033228 GCACTGTGTCTCTGACAGCT 59.967 55.000 9.86 0.00 43.57 4.24 F
450 513 0.171007 GGGCATGGTGACGAACAATG 59.829 55.000 0.00 6.14 42.46 2.82 F
825 1271 0.310543 TCATTGTTTGGCAGCACGAC 59.689 50.000 0.00 0.00 0.00 4.34 F
2219 8274 0.771127 AGCTTTGCCCTACTGTTCCA 59.229 50.000 0.00 0.00 0.00 3.53 F
2678 8734 1.071471 GTGGACAGTGTGGTGAGGG 59.929 63.158 0.00 0.00 0.00 4.30 F
3489 9560 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1274 4758 0.183731 GCATCTTAGGGTTGAGGGGG 59.816 60.000 0.00 0.00 0.00 5.40 R
2047 8101 0.246635 AGGACATAGTGTGCACGGAC 59.753 55.000 13.13 5.72 41.46 4.79 R
2649 8705 0.764369 ACTGTCCACTGGCTCTGGAA 60.764 55.000 5.42 0.00 39.60 3.53 R
3022 9079 1.466167 CAGCTTCACGGACTTTGGATG 59.534 52.381 0.00 0.00 0.00 3.51 R
4497 10786 0.616111 TGGCTTTGTGGGGTGTTTGT 60.616 50.000 0.00 0.00 0.00 2.83 R
5327 11685 0.251077 AAAGAGTTCAGGCCAGCAGG 60.251 55.000 5.01 0.00 38.23 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.675404 GACACTGAGGTCCGGTTG 57.325 61.111 0.00 0.00 30.29 3.77
40 41 0.944386 CACTGAGGTCCGGTTGTTTG 59.056 55.000 0.00 0.00 30.29 2.93
51 52 2.489971 CGGTTGTTTGCTACCTGAAGA 58.510 47.619 0.00 0.00 38.17 2.87
59 60 5.645067 TGTTTGCTACCTGAAGATGAAGATG 59.355 40.000 0.00 0.00 0.00 2.90
60 61 5.682234 TTGCTACCTGAAGATGAAGATGA 57.318 39.130 0.00 0.00 0.00 2.92
67 68 6.347696 ACCTGAAGATGAAGATGAAGATGTC 58.652 40.000 0.00 0.00 0.00 3.06
120 121 0.326264 AGCTTTGCTCCGATCAAGGT 59.674 50.000 0.00 0.00 30.62 3.50
226 227 9.696917 ATAACTTGTTTAAAATCAGGAAGCAAG 57.303 29.630 8.35 8.35 43.18 4.01
231 232 7.596494 TGTTTAAAATCAGGAAGCAAGATCAG 58.404 34.615 0.00 0.00 0.00 2.90
272 281 4.668576 TTGCTTTATTTCTCTCGCACTG 57.331 40.909 0.00 0.00 0.00 3.66
273 282 3.664107 TGCTTTATTTCTCTCGCACTGT 58.336 40.909 0.00 0.00 0.00 3.55
286 295 0.033228 GCACTGTGTCTCTGACAGCT 59.967 55.000 9.86 0.00 43.57 4.24
308 317 4.614555 TTCAAGCAATAATTCGTCGCAT 57.385 36.364 0.00 0.00 0.00 4.73
325 334 4.802039 GTCGCATCAAAATCTAGTACGGAA 59.198 41.667 0.00 0.00 0.00 4.30
330 339 7.328493 CGCATCAAAATCTAGTACGGAATATCA 59.672 37.037 0.00 0.00 0.00 2.15
341 350 6.106673 AGTACGGAATATCAAACTGGACAAG 58.893 40.000 0.00 0.00 0.00 3.16
343 352 4.019681 ACGGAATATCAAACTGGACAAGGA 60.020 41.667 0.00 0.00 0.00 3.36
363 377 2.083002 ACTAGGTCGAGAACGGAGAAC 58.917 52.381 0.00 0.00 40.21 3.01
409 423 6.451064 AAGATTAATTTGGGGCGAAAGTAG 57.549 37.500 0.00 0.00 0.00 2.57
419 482 3.433740 GGGGCGAAAGTAGAATTGGATCT 60.434 47.826 0.00 0.00 0.00 2.75
420 483 4.200092 GGGCGAAAGTAGAATTGGATCTT 58.800 43.478 0.00 0.00 0.00 2.40
421 484 4.035675 GGGCGAAAGTAGAATTGGATCTTG 59.964 45.833 0.00 0.00 0.00 3.02
422 485 4.876107 GGCGAAAGTAGAATTGGATCTTGA 59.124 41.667 0.00 0.00 0.00 3.02
423 486 5.529060 GGCGAAAGTAGAATTGGATCTTGAT 59.471 40.000 0.00 0.00 0.00 2.57
424 487 6.038714 GGCGAAAGTAGAATTGGATCTTGATT 59.961 38.462 0.00 0.00 0.00 2.57
425 488 7.128976 GCGAAAGTAGAATTGGATCTTGATTC 58.871 38.462 0.00 0.85 0.00 2.52
426 489 7.011857 GCGAAAGTAGAATTGGATCTTGATTCT 59.988 37.037 16.92 16.92 41.55 2.40
427 490 9.534565 CGAAAGTAGAATTGGATCTTGATTCTA 57.465 33.333 15.58 15.58 39.89 2.10
433 496 7.002879 AGAATTGGATCTTGATTCTACATGGG 58.997 38.462 13.41 0.00 38.11 4.00
434 497 4.090761 TGGATCTTGATTCTACATGGGC 57.909 45.455 0.00 0.00 0.00 5.36
435 498 3.459227 TGGATCTTGATTCTACATGGGCA 59.541 43.478 0.00 0.00 0.00 5.36
436 499 4.105217 TGGATCTTGATTCTACATGGGCAT 59.895 41.667 0.00 0.00 0.00 4.40
437 500 4.458295 GGATCTTGATTCTACATGGGCATG 59.542 45.833 0.00 0.00 44.15 4.06
438 501 3.824133 TCTTGATTCTACATGGGCATGG 58.176 45.455 0.00 0.00 42.91 3.66
439 502 3.202818 TCTTGATTCTACATGGGCATGGT 59.797 43.478 0.00 0.00 42.91 3.55
440 503 2.934887 TGATTCTACATGGGCATGGTG 58.065 47.619 0.00 0.00 42.91 4.17
441 504 2.509131 TGATTCTACATGGGCATGGTGA 59.491 45.455 0.00 0.00 42.91 4.02
442 505 2.418368 TTCTACATGGGCATGGTGAC 57.582 50.000 0.00 0.00 42.91 3.67
443 506 0.177836 TCTACATGGGCATGGTGACG 59.822 55.000 0.00 0.00 42.91 4.35
444 507 0.177836 CTACATGGGCATGGTGACGA 59.822 55.000 0.00 0.00 42.91 4.20
445 508 0.615850 TACATGGGCATGGTGACGAA 59.384 50.000 0.00 0.00 42.91 3.85
446 509 0.960364 ACATGGGCATGGTGACGAAC 60.960 55.000 0.00 0.00 42.91 3.95
447 510 0.959867 CATGGGCATGGTGACGAACA 60.960 55.000 0.00 0.00 35.24 3.18
448 511 0.251121 ATGGGCATGGTGACGAACAA 60.251 50.000 0.00 0.00 0.00 2.83
449 512 0.251121 TGGGCATGGTGACGAACAAT 60.251 50.000 0.00 0.00 0.00 2.71
450 513 0.171007 GGGCATGGTGACGAACAATG 59.829 55.000 0.00 6.14 42.46 2.82
451 514 0.881118 GGCATGGTGACGAACAATGT 59.119 50.000 10.63 0.00 41.69 2.71
452 515 1.135689 GGCATGGTGACGAACAATGTC 60.136 52.381 10.63 5.93 41.69 3.06
453 516 1.135689 GCATGGTGACGAACAATGTCC 60.136 52.381 10.63 0.00 41.69 4.02
454 517 2.150390 CATGGTGACGAACAATGTCCA 58.850 47.619 0.00 0.00 35.70 4.02
455 518 2.559698 TGGTGACGAACAATGTCCAT 57.440 45.000 0.00 0.00 35.46 3.41
456 519 2.150390 TGGTGACGAACAATGTCCATG 58.850 47.619 0.00 0.00 35.46 3.66
457 520 2.151202 GGTGACGAACAATGTCCATGT 58.849 47.619 0.00 0.00 35.46 3.21
458 521 3.244249 TGGTGACGAACAATGTCCATGTA 60.244 43.478 0.00 0.00 35.46 2.29
459 522 3.938963 GGTGACGAACAATGTCCATGTAT 59.061 43.478 0.00 0.00 35.46 2.29
460 523 4.201812 GGTGACGAACAATGTCCATGTATG 60.202 45.833 0.00 0.00 35.46 2.39
461 524 4.391830 GTGACGAACAATGTCCATGTATGT 59.608 41.667 0.00 0.00 35.46 2.29
462 525 4.391523 TGACGAACAATGTCCATGTATGTG 59.608 41.667 0.00 0.00 35.46 3.21
463 526 4.574892 ACGAACAATGTCCATGTATGTGA 58.425 39.130 0.00 0.00 0.00 3.58
464 527 4.631377 ACGAACAATGTCCATGTATGTGAG 59.369 41.667 0.00 0.00 0.00 3.51
465 528 4.034394 CGAACAATGTCCATGTATGTGAGG 59.966 45.833 0.00 0.00 0.00 3.86
466 529 4.574674 ACAATGTCCATGTATGTGAGGT 57.425 40.909 0.00 0.00 0.00 3.85
467 530 4.264253 ACAATGTCCATGTATGTGAGGTG 58.736 43.478 0.00 0.00 0.00 4.00
468 531 2.401583 TGTCCATGTATGTGAGGTGC 57.598 50.000 0.00 0.00 0.00 5.01
469 532 1.065491 TGTCCATGTATGTGAGGTGCC 60.065 52.381 0.00 0.00 0.00 5.01
470 533 1.210478 GTCCATGTATGTGAGGTGCCT 59.790 52.381 0.00 0.00 0.00 4.75
471 534 2.434336 GTCCATGTATGTGAGGTGCCTA 59.566 50.000 0.00 0.00 0.00 3.93
472 535 2.434336 TCCATGTATGTGAGGTGCCTAC 59.566 50.000 0.00 0.00 0.00 3.18
473 536 2.473816 CATGTATGTGAGGTGCCTACG 58.526 52.381 0.00 0.00 0.00 3.51
499 562 1.835693 CAGAGAAGCCAGATCCCCC 59.164 63.158 0.00 0.00 0.00 5.40
543 610 0.749649 CAGATCGAGGAGGGAACAGG 59.250 60.000 0.00 0.00 0.00 4.00
549 616 0.467804 GAGGAGGGAACAGGATCAGC 59.532 60.000 0.00 0.00 0.00 4.26
551 618 1.144936 GAGGGAACAGGATCAGCCG 59.855 63.158 0.00 0.00 43.43 5.52
590 657 3.125520 GGGGGAGACAGCTAGAGAG 57.874 63.158 0.00 0.00 0.00 3.20
606 673 2.745281 AGAGAGAAGAAGAAGACGACGG 59.255 50.000 0.00 0.00 0.00 4.79
648 715 3.443925 CGCCTCGCTGACTCTCCA 61.444 66.667 0.00 0.00 0.00 3.86
669 736 4.570663 CGGATCCGGCGTGAGGAC 62.571 72.222 26.95 0.00 41.10 3.85
707 774 1.421410 AATCGAAGCGGCGACATGTC 61.421 55.000 16.21 16.21 43.79 3.06
712 779 4.152625 GCGGCGACATGTCTGCAC 62.153 66.667 29.97 22.07 33.22 4.57
713 780 3.490759 CGGCGACATGTCTGCACC 61.491 66.667 29.97 21.56 33.22 5.01
714 781 2.358615 GGCGACATGTCTGCACCA 60.359 61.111 29.97 0.00 33.22 4.17
724 791 3.190849 CTGCACCACGCTCCGATG 61.191 66.667 0.00 0.00 43.06 3.84
731 798 4.194720 ACGCTCCGATGTCGCTCC 62.195 66.667 0.00 0.00 38.18 4.70
772 1218 0.396695 TAGGGCTGTCCTTACGAGGG 60.397 60.000 5.94 0.00 45.47 4.30
773 1219 2.732619 GGGCTGTCCTTACGAGGGG 61.733 68.421 0.00 0.00 43.72 4.79
774 1220 2.732619 GGCTGTCCTTACGAGGGGG 61.733 68.421 0.00 0.00 43.72 5.40
802 1248 7.418337 AAAAATACATGGACCCTAAATGGAC 57.582 36.000 0.00 0.00 38.35 4.02
803 1249 4.724279 ATACATGGACCCTAAATGGACC 57.276 45.455 0.00 0.00 38.35 4.46
804 1250 1.569072 ACATGGACCCTAAATGGACCC 59.431 52.381 0.00 0.00 38.35 4.46
806 1252 1.994399 TGGACCCTAAATGGACCCAT 58.006 50.000 0.00 0.00 38.35 4.00
810 1256 3.117131 GGACCCTAAATGGACCCATCATT 60.117 47.826 1.48 0.00 38.35 2.57
811 1257 3.891366 GACCCTAAATGGACCCATCATTG 59.109 47.826 1.48 0.00 38.35 2.82
815 1261 5.395546 CCCTAAATGGACCCATCATTGTTTG 60.396 44.000 1.48 0.00 38.35 2.93
816 1262 4.556592 AAATGGACCCATCATTGTTTGG 57.443 40.909 1.48 2.57 35.31 3.28
817 1263 1.265236 TGGACCCATCATTGTTTGGC 58.735 50.000 0.00 0.00 0.00 4.52
819 1265 1.205417 GGACCCATCATTGTTTGGCAG 59.795 52.381 0.00 0.00 0.00 4.85
820 1266 0.609662 ACCCATCATTGTTTGGCAGC 59.390 50.000 0.00 0.00 0.00 5.25
822 1268 1.673626 CCCATCATTGTTTGGCAGCAC 60.674 52.381 0.00 0.00 0.00 4.40
823 1269 1.342555 CATCATTGTTTGGCAGCACG 58.657 50.000 0.00 0.00 0.00 5.34
824 1270 1.068402 CATCATTGTTTGGCAGCACGA 60.068 47.619 0.00 0.00 0.00 4.35
825 1271 0.310543 TCATTGTTTGGCAGCACGAC 59.689 50.000 0.00 0.00 0.00 4.34
829 4284 1.891919 GTTTGGCAGCACGACCTGA 60.892 57.895 10.45 0.00 34.77 3.86
833 4288 2.743928 GCAGCACGACCTGAAGGG 60.744 66.667 10.45 0.00 40.27 3.95
842 4297 2.234908 ACGACCTGAAGGGAAAGAGATG 59.765 50.000 0.56 0.00 40.27 2.90
899 4368 2.960170 CGTTCCTTCCGGAGTCGT 59.040 61.111 3.34 0.00 41.25 4.34
900 4369 1.443872 CGTTCCTTCCGGAGTCGTG 60.444 63.158 3.34 0.00 41.25 4.35
901 4370 1.737008 GTTCCTTCCGGAGTCGTGC 60.737 63.158 3.34 0.00 41.25 5.34
902 4371 2.939261 TTCCTTCCGGAGTCGTGCC 61.939 63.158 3.34 0.00 41.25 5.01
903 4372 3.691342 CCTTCCGGAGTCGTGCCA 61.691 66.667 3.34 0.00 33.95 4.92
904 4373 2.432628 CTTCCGGAGTCGTGCCAC 60.433 66.667 3.34 0.00 33.95 5.01
911 4380 3.941657 GAGTCGTGCCACTGCCTCC 62.942 68.421 0.00 0.00 36.33 4.30
998 4469 2.202756 GCCTACGAGGTTCCGCAG 60.203 66.667 0.00 0.00 37.80 5.18
1248 4719 2.310233 CGTCAACTGGTCCGTGCAG 61.310 63.158 0.00 0.00 0.00 4.41
1298 4783 3.217626 CCTCAACCCTAAGATGCATTCC 58.782 50.000 0.00 0.00 0.00 3.01
1368 4853 2.263741 GCTGTTGTGCTGGTGGAGG 61.264 63.158 0.00 0.00 0.00 4.30
1401 4886 3.547613 CGCTCCTGAATTCAGCTAATTGC 60.548 47.826 27.01 20.16 42.47 3.56
1419 4904 1.503542 CGGCATCAAACTCACCTGC 59.496 57.895 0.00 0.00 0.00 4.85
1431 4916 3.866651 ACTCACCTGCAATCTGACATAC 58.133 45.455 0.00 0.00 0.00 2.39
1435 4920 2.573462 ACCTGCAATCTGACATACCTGT 59.427 45.455 0.00 0.00 38.67 4.00
1436 4921 3.009473 ACCTGCAATCTGACATACCTGTT 59.991 43.478 0.00 0.00 35.14 3.16
1437 4922 3.376234 CCTGCAATCTGACATACCTGTTG 59.624 47.826 0.00 0.00 35.14 3.33
1439 4924 4.002982 TGCAATCTGACATACCTGTTGTC 58.997 43.478 0.00 0.00 43.04 3.18
1466 7509 1.068055 GTTGCTCATGTTGCTCTTGGG 60.068 52.381 12.86 0.00 0.00 4.12
1507 7557 1.487976 TCAGGGCTTGGAGCTTATCAG 59.512 52.381 0.00 0.00 41.99 2.90
1508 7558 0.842635 AGGGCTTGGAGCTTATCAGG 59.157 55.000 0.00 0.00 41.99 3.86
1536 7586 5.989551 TGTGTGCATATTAGTGCTGTATG 57.010 39.130 0.00 0.00 45.27 2.39
1538 7588 5.523552 TGTGTGCATATTAGTGCTGTATGTC 59.476 40.000 0.00 0.00 45.27 3.06
1558 7608 6.236017 TGTCAAGACAACATTTCGTAATCC 57.764 37.500 0.00 0.00 38.56 3.01
1607 7657 3.311322 TGCGGTGCTTGCATAGTAATAAC 59.689 43.478 0.00 0.00 37.44 1.89
1616 7666 8.447833 TGCTTGCATAGTAATAACAGTAAACAC 58.552 33.333 0.00 0.00 0.00 3.32
1628 7678 3.749609 ACAGTAAACACATAACGAAGCCC 59.250 43.478 0.00 0.00 0.00 5.19
1636 7686 3.980775 CACATAACGAAGCCCTTTTGTTG 59.019 43.478 0.00 0.00 42.20 3.33
1669 7719 3.486383 TGCCGAAAAGGATCTTCAAAGT 58.514 40.909 0.00 0.00 45.00 2.66
1766 7816 4.095483 GTCCATGTAAAGAATGGTGCTCAG 59.905 45.833 2.57 0.00 44.27 3.35
1778 7828 1.376295 TGCTCAGCGTGCACATCAT 60.376 52.632 18.64 0.00 35.31 2.45
1831 7881 2.426024 TGGTCTCGCTATACAACAGGTC 59.574 50.000 0.00 0.00 0.00 3.85
1849 7901 1.580132 CGTATTTTCGTGGCGCTGC 60.580 57.895 7.64 0.00 0.00 5.25
1868 7920 1.873591 GCGCCAAATCGATCCACTTAT 59.126 47.619 0.00 0.00 0.00 1.73
1935 7988 5.177881 TCATGTTTGAATTGTTTGCTGCATC 59.822 36.000 1.84 0.47 0.00 3.91
1949 8002 7.871973 TGTTTGCTGCATCAAATTTGTATAACT 59.128 29.630 17.86 0.00 38.12 2.24
2069 8123 1.134699 CCGTGCACACTATGTCCTCAT 60.135 52.381 18.64 0.00 38.00 2.90
2153 8208 9.762933 GTGGGCAATATCACATTTTAATATGTT 57.237 29.630 8.61 0.00 36.64 2.71
2154 8209 9.979578 TGGGCAATATCACATTTTAATATGTTC 57.020 29.630 8.61 0.00 36.64 3.18
2207 8262 0.960364 TTCCGGATGGACAGCTTTGC 60.960 55.000 4.15 0.00 46.45 3.68
2219 8274 0.771127 AGCTTTGCCCTACTGTTCCA 59.229 50.000 0.00 0.00 0.00 3.53
2278 8333 6.012337 TCTCTCTTCTGATCTCATACCACT 57.988 41.667 0.00 0.00 0.00 4.00
2282 8337 8.175925 TCTCTTCTGATCTCATACCACTAATG 57.824 38.462 0.00 0.00 0.00 1.90
2324 8379 1.182667 GGGGTTTTGACATAGGCACC 58.817 55.000 0.00 0.00 0.00 5.01
2351 8406 3.117738 CCAATTGCATCTACCCTCTCCTT 60.118 47.826 0.00 0.00 0.00 3.36
2407 8462 5.435686 TCTGGTATGCTTTTATCCTGTGT 57.564 39.130 0.00 0.00 0.00 3.72
2408 8463 5.185454 TCTGGTATGCTTTTATCCTGTGTG 58.815 41.667 0.00 0.00 0.00 3.82
2418 8473 6.402658 GCTTTTATCCTGTGTGCTAGAAGTTC 60.403 42.308 0.00 0.00 0.00 3.01
2431 8486 6.261826 GTGCTAGAAGTTCCATGAAGCATAAT 59.738 38.462 13.90 0.00 40.28 1.28
2495 8551 2.997986 CCATGCTCAGTTGGATTTTTGC 59.002 45.455 0.00 0.00 34.81 3.68
2518 8574 4.270245 TGTAGATGTGACTGATGTTGCA 57.730 40.909 0.00 0.00 0.00 4.08
2649 8705 2.636893 AGGAAGCAGTCAGTGAGAACAT 59.363 45.455 0.00 0.00 0.00 2.71
2651 8707 3.434984 GGAAGCAGTCAGTGAGAACATTC 59.565 47.826 0.00 0.00 0.00 2.67
2678 8734 1.071471 GTGGACAGTGTGGTGAGGG 59.929 63.158 0.00 0.00 0.00 4.30
2721 8777 4.262894 GGGTGTTGTGAAGGATAGTGAGAA 60.263 45.833 0.00 0.00 0.00 2.87
2749 8805 3.244875 ACTTCTGTATGTGCAATCCACCA 60.245 43.478 0.00 0.00 44.01 4.17
2875 8931 9.507329 ACACATATAATTGAAGACAGTGTTTCT 57.493 29.630 14.88 0.42 34.38 2.52
2919 8975 3.653344 TCATATCTGATGTTACAGCGGC 58.347 45.455 4.35 0.00 37.75 6.53
3089 9146 1.369209 CGTGCAAGGACAAACAGCG 60.369 57.895 0.00 0.00 0.00 5.18
3274 9331 7.745620 ATAACTTTGGTTTTAGTGGTCTCTG 57.254 36.000 0.00 0.00 36.92 3.35
3355 9415 7.569240 TCTAGTTCTCATGAGTGTGATCTCTA 58.431 38.462 21.92 11.92 35.68 2.43
3376 9436 9.920133 TCTCTACATCACAGATAGCATTAATTC 57.080 33.333 0.00 0.00 0.00 2.17
3437 9497 8.788325 AAGTGACTCAACTTTACACTAACTTT 57.212 30.769 0.00 0.00 40.23 2.66
3438 9498 8.197988 AGTGACTCAACTTTACACTAACTTTG 57.802 34.615 0.00 0.00 39.52 2.77
3440 9500 9.090692 GTGACTCAACTTTACACTAACTTTGTA 57.909 33.333 0.00 0.00 0.00 2.41
3441 9501 9.090692 TGACTCAACTTTACACTAACTTTGTAC 57.909 33.333 0.00 0.00 0.00 2.90
3442 9502 9.310716 GACTCAACTTTACACTAACTTTGTACT 57.689 33.333 0.00 0.00 0.00 2.73
3489 9560 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
3508 9607 6.253727 GGAGTACATCTCATCGTTGTTTGTAG 59.746 42.308 0.00 0.00 44.40 2.74
3514 9613 6.312399 TCTCATCGTTGTTTGTAGCATTTT 57.688 33.333 0.00 0.00 0.00 1.82
3583 9746 8.597662 TGTTTTAGTTCTTGTTATCGCTAGTT 57.402 30.769 0.00 0.00 0.00 2.24
3630 9793 3.508648 TTTGTGCTTTAACGTACGCTC 57.491 42.857 16.72 0.00 0.00 5.03
3631 9794 2.427232 TGTGCTTTAACGTACGCTCT 57.573 45.000 16.72 2.51 0.00 4.09
3673 9838 1.963855 CCGACGTGGAAATGGTGCA 60.964 57.895 0.00 0.00 42.00 4.57
3710 9875 4.345257 AGTCAGCTGAGACCTTTTTCTGTA 59.655 41.667 18.89 0.00 39.34 2.74
3872 10041 9.757227 GTCTTAGTATGTCAATCTCTTGCTAAT 57.243 33.333 0.00 0.00 32.11 1.73
3905 10076 8.662781 TGAAATATCTGTCTAGGTTACATTGC 57.337 34.615 0.00 0.00 0.00 3.56
3938 10109 1.822990 CTCAGGCTGCAACATTGGATT 59.177 47.619 10.34 0.00 0.00 3.01
3990 10161 4.494091 ACTCTACAAAGGTGCATAGCAT 57.506 40.909 0.00 0.00 41.91 3.79
4232 10403 3.784338 ACAAACATGCAGACACCTTTTG 58.216 40.909 0.00 0.00 32.35 2.44
4249 10421 5.170748 CCTTTTGGGTTGCTTCAATACATC 58.829 41.667 0.00 0.00 35.46 3.06
4263 10435 8.390354 GCTTCAATACATCGCATGCTTATATTA 58.610 33.333 17.13 4.82 0.00 0.98
4289 10525 1.245732 CCTTATACTCCCTCCGTCCG 58.754 60.000 0.00 0.00 0.00 4.79
4290 10526 1.202855 CCTTATACTCCCTCCGTCCGA 60.203 57.143 0.00 0.00 0.00 4.55
4293 10529 2.083628 ATACTCCCTCCGTCCGAAAT 57.916 50.000 0.00 0.00 0.00 2.17
4296 10532 1.479730 ACTCCCTCCGTCCGAAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4297 10533 1.755380 CTCCCTCCGTCCGAAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4300 10536 2.354403 CCCTCCGTCCGAAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4302 10538 2.597305 CTCCGTCCGAAATTACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
4303 10539 2.030007 TCCGTCCGAAATTACTTGTCGT 60.030 45.455 0.00 0.00 32.93 4.34
4304 10540 3.190327 TCCGTCCGAAATTACTTGTCGTA 59.810 43.478 0.00 0.00 32.93 3.43
4305 10541 3.545078 CCGTCCGAAATTACTTGTCGTAG 59.455 47.826 0.00 0.00 32.93 3.51
4306 10542 4.161333 CGTCCGAAATTACTTGTCGTAGT 58.839 43.478 0.00 0.00 32.93 2.73
4308 10544 5.219914 CGTCCGAAATTACTTGTCGTAGTTC 60.220 44.000 0.00 0.00 32.93 3.01
4310 10546 7.023575 GTCCGAAATTACTTGTCGTAGTTCTA 58.976 38.462 0.00 0.00 32.93 2.10
4311 10547 7.217825 GTCCGAAATTACTTGTCGTAGTTCTAG 59.782 40.741 0.00 0.00 32.93 2.43
4313 10549 7.914346 CCGAAATTACTTGTCGTAGTTCTAGAT 59.086 37.037 0.00 0.00 32.93 1.98
4314 10550 9.926751 CGAAATTACTTGTCGTAGTTCTAGATA 57.073 33.333 0.00 0.00 29.00 1.98
4320 10556 8.289939 ACTTGTCGTAGTTCTAGATAAATCCA 57.710 34.615 0.00 0.00 0.00 3.41
4321 10557 8.915036 ACTTGTCGTAGTTCTAGATAAATCCAT 58.085 33.333 0.00 0.00 0.00 3.41
4330 10566 9.225682 AGTTCTAGATAAATCCATTTCTACCCA 57.774 33.333 0.00 0.00 0.00 4.51
4337 10573 8.962884 ATAAATCCATTTCTACCCATTTTTGC 57.037 30.769 0.00 0.00 0.00 3.68
4338 10574 4.448537 TCCATTTCTACCCATTTTTGCG 57.551 40.909 0.00 0.00 0.00 4.85
4340 10576 4.082463 TCCATTTCTACCCATTTTTGCGAC 60.082 41.667 0.00 0.00 0.00 5.19
4342 10578 5.124776 CCATTTCTACCCATTTTTGCGACTA 59.875 40.000 0.00 0.00 0.00 2.59
4344 10580 4.546829 TCTACCCATTTTTGCGACTAGT 57.453 40.909 0.00 0.00 0.00 2.57
4345 10581 5.664294 TCTACCCATTTTTGCGACTAGTA 57.336 39.130 0.00 0.00 0.00 1.82
4346 10582 6.040209 TCTACCCATTTTTGCGACTAGTAA 57.960 37.500 0.00 0.00 0.00 2.24
4347 10583 6.646267 TCTACCCATTTTTGCGACTAGTAAT 58.354 36.000 0.00 0.00 0.00 1.89
4348 10584 7.107542 TCTACCCATTTTTGCGACTAGTAATT 58.892 34.615 0.00 0.00 0.00 1.40
4349 10585 6.584185 ACCCATTTTTGCGACTAGTAATTT 57.416 33.333 0.00 0.00 0.00 1.82
4350 10586 6.386654 ACCCATTTTTGCGACTAGTAATTTG 58.613 36.000 0.00 0.00 0.00 2.32
4351 10587 5.804979 CCCATTTTTGCGACTAGTAATTTGG 59.195 40.000 0.00 0.00 0.00 3.28
4353 10589 6.526674 CCATTTTTGCGACTAGTAATTTGGAC 59.473 38.462 0.00 0.00 0.00 4.02
4354 10590 6.621316 TTTTTGCGACTAGTAATTTGGACA 57.379 33.333 0.00 0.00 0.00 4.02
4355 10591 5.856126 TTTGCGACTAGTAATTTGGACAG 57.144 39.130 0.00 0.00 0.00 3.51
4356 10592 4.794278 TGCGACTAGTAATTTGGACAGA 57.206 40.909 0.00 0.00 0.00 3.41
4358 10594 4.113354 GCGACTAGTAATTTGGACAGAGG 58.887 47.826 0.00 0.00 0.00 3.69
4361 10597 5.105473 CGACTAGTAATTTGGACAGAGGGAA 60.105 44.000 0.00 0.00 0.00 3.97
4362 10598 6.407074 CGACTAGTAATTTGGACAGAGGGAAT 60.407 42.308 0.00 0.00 0.00 3.01
4363 10599 7.201884 CGACTAGTAATTTGGACAGAGGGAATA 60.202 40.741 0.00 0.00 0.00 1.75
4364 10600 8.568617 ACTAGTAATTTGGACAGAGGGAATAT 57.431 34.615 0.00 0.00 0.00 1.28
4365 10601 9.670442 ACTAGTAATTTGGACAGAGGGAATATA 57.330 33.333 0.00 0.00 0.00 0.86
4418 10682 2.029838 AAGTGCAAGCCTAGATTCCG 57.970 50.000 0.00 0.00 0.00 4.30
4421 10685 1.398390 GTGCAAGCCTAGATTCCGTTG 59.602 52.381 0.00 0.00 0.00 4.10
4423 10687 1.398390 GCAAGCCTAGATTCCGTTGTG 59.602 52.381 0.00 0.00 0.00 3.33
4428 10692 2.601763 GCCTAGATTCCGTTGTGTTACG 59.398 50.000 0.00 0.00 41.06 3.18
4441 10726 2.295349 TGTGTTACGACAGAGAGTTCCC 59.705 50.000 0.00 0.00 36.20 3.97
4452 10737 4.283722 ACAGAGAGTTCCCGATACAAGTTT 59.716 41.667 0.00 0.00 0.00 2.66
4465 10750 1.673920 ACAAGTTTACCACACAAGCCG 59.326 47.619 0.00 0.00 0.00 5.52
4497 10786 2.557056 CGAGTAGTGTGGAGTTTCTGGA 59.443 50.000 0.00 0.00 0.00 3.86
4510 10799 0.626382 TTCTGGACAAACACCCCACA 59.374 50.000 0.00 0.00 0.00 4.17
4515 10804 0.104120 GACAAACACCCCACAAAGCC 59.896 55.000 0.00 0.00 0.00 4.35
4516 10805 0.616111 ACAAACACCCCACAAAGCCA 60.616 50.000 0.00 0.00 0.00 4.75
4522 10811 0.176910 ACCCCACAAAGCCAAAAACG 59.823 50.000 0.00 0.00 0.00 3.60
4835 11135 0.791422 TTGTTCGTTATTGACCGCCG 59.209 50.000 0.00 0.00 0.00 6.46
4846 11146 2.596046 ACCGCCGTTGCCATTGAA 60.596 55.556 0.00 0.00 0.00 2.69
4849 11149 0.598680 CCGCCGTTGCCATTGAAAAA 60.599 50.000 0.00 0.00 0.00 1.94
4871 11171 8.716674 AAAAATTCAGGCATACAGGATCATAT 57.283 30.769 0.00 0.00 0.00 1.78
4872 11172 7.934855 AAATTCAGGCATACAGGATCATATC 57.065 36.000 0.00 0.00 0.00 1.63
4909 11210 4.505922 CAGAGGCGAATAAGATGTCACTTC 59.494 45.833 0.00 0.00 0.00 3.01
4921 11222 5.609423 AGATGTCACTTCTCATATTCAGGC 58.391 41.667 0.00 0.00 0.00 4.85
4931 11232 1.538512 CATATTCAGGCCGCATGAAGG 59.461 52.381 23.27 12.87 39.86 3.46
5001 11303 3.018856 TCATTCCTGCACCAATCATGAC 58.981 45.455 0.00 0.00 0.00 3.06
5005 11307 1.064906 CCTGCACCAATCATGACCTCT 60.065 52.381 0.00 0.00 0.00 3.69
5017 11319 4.785301 TCATGACCTCTGGAATCCAAATC 58.215 43.478 2.61 0.00 30.80 2.17
5022 11324 3.782523 ACCTCTGGAATCCAAATCTAGCA 59.217 43.478 2.61 0.00 30.80 3.49
5026 11365 3.881688 CTGGAATCCAAATCTAGCAGTGG 59.118 47.826 2.61 0.31 30.80 4.00
5056 11395 2.661866 GCACGAGCGGACAACACT 60.662 61.111 0.00 0.00 0.00 3.55
5067 11407 5.730550 AGCGGACAACACTTTCTTATGATA 58.269 37.500 0.00 0.00 0.00 2.15
5100 11440 1.667236 TATTGCACCGATGGCTTCTG 58.333 50.000 0.00 0.00 0.00 3.02
5109 11449 1.493950 GATGGCTTCTGTGGATCGCG 61.494 60.000 0.00 0.00 0.00 5.87
5159 11500 3.326733 TTGTGGTGAAAATTGACGACG 57.673 42.857 0.00 0.00 0.00 5.12
5160 11501 2.552031 TGTGGTGAAAATTGACGACGA 58.448 42.857 0.00 0.00 0.00 4.20
5161 11502 2.285756 TGTGGTGAAAATTGACGACGAC 59.714 45.455 0.00 0.00 0.00 4.34
5162 11503 2.285756 GTGGTGAAAATTGACGACGACA 59.714 45.455 0.00 0.00 0.00 4.35
5165 11506 3.737266 GGTGAAAATTGACGACGACACTA 59.263 43.478 0.00 0.00 0.00 2.74
5171 11512 3.374220 TTGACGACGACACTAAACCAT 57.626 42.857 0.00 0.00 0.00 3.55
5172 11513 2.937591 TGACGACGACACTAAACCATC 58.062 47.619 0.00 0.00 0.00 3.51
5202 11543 1.204704 TCTGCAGGTACCTTCACATCG 59.795 52.381 13.15 1.63 0.00 3.84
5203 11544 0.391130 TGCAGGTACCTTCACATCGC 60.391 55.000 13.15 11.49 0.00 4.58
5275 11632 1.414550 GGTAGCTCAAGAGTCCATCCC 59.585 57.143 0.00 0.00 0.00 3.85
5277 11634 1.144936 GCTCAAGAGTCCATCCCCG 59.855 63.158 0.00 0.00 0.00 5.73
5278 11635 1.617947 GCTCAAGAGTCCATCCCCGT 61.618 60.000 0.00 0.00 0.00 5.28
5279 11636 0.461961 CTCAAGAGTCCATCCCCGTC 59.538 60.000 0.00 0.00 0.00 4.79
5280 11637 0.252057 TCAAGAGTCCATCCCCGTCA 60.252 55.000 0.00 0.00 0.00 4.35
5282 11639 0.613777 AAGAGTCCATCCCCGTCAAC 59.386 55.000 0.00 0.00 0.00 3.18
5303 11661 2.358898 CGGGGCCTTAATCATGAACAAG 59.641 50.000 0.84 6.10 0.00 3.16
5309 11667 4.790766 GCCTTAATCATGAACAAGCGGATG 60.791 45.833 0.00 0.00 0.00 3.51
5327 11685 4.935808 CGGATGAGGCTATTATTGTAACCC 59.064 45.833 0.00 0.00 0.00 4.11
5336 11694 0.257616 TATTGTAACCCCTGCTGGCC 59.742 55.000 3.63 0.00 0.00 5.36
5400 11761 3.537206 GACTGACAGCAACGGCCCT 62.537 63.158 1.25 0.00 42.56 5.19
5463 11824 4.722700 GCCTGCACCACACCCGAT 62.723 66.667 0.00 0.00 0.00 4.18
5464 11825 2.034066 CCTGCACCACACCCGATT 59.966 61.111 0.00 0.00 0.00 3.34
5465 11826 2.040544 CCTGCACCACACCCGATTC 61.041 63.158 0.00 0.00 0.00 2.52
5466 11827 2.033448 TGCACCACACCCGATTCC 59.967 61.111 0.00 0.00 0.00 3.01
5467 11828 2.033448 GCACCACACCCGATTCCA 59.967 61.111 0.00 0.00 0.00 3.53
5486 11847 7.010738 CGATTCCAATTCCAATTCCATCTTTTG 59.989 37.037 0.00 0.00 0.00 2.44
5487 11848 5.490159 TCCAATTCCAATTCCATCTTTTGC 58.510 37.500 0.00 0.00 0.00 3.68
5488 11849 5.248934 TCCAATTCCAATTCCATCTTTTGCT 59.751 36.000 0.00 0.00 0.00 3.91
5612 11987 3.367806 GCCTTTGCTCTTTTCCAGATTCC 60.368 47.826 0.00 0.00 33.53 3.01
5615 11990 0.735471 GCTCTTTTCCAGATTCCGCC 59.265 55.000 0.00 0.00 0.00 6.13
5689 12066 0.874390 GTCACGCTTTTGGAGATGCA 59.126 50.000 0.00 0.00 0.00 3.96
5719 12096 0.310854 CTCCGGTGGTTTGTTTGAGC 59.689 55.000 0.00 0.00 0.00 4.26
5775 12152 2.592194 TGACGTGTTTCAGATACGCTC 58.408 47.619 0.00 1.70 45.46 5.03
5779 12156 2.325761 GTGTTTCAGATACGCTCGTGT 58.674 47.619 5.05 0.00 0.00 4.49
5810 12187 3.263941 GCCGATTTTGACAGGCGT 58.736 55.556 0.00 0.00 40.17 5.68
5817 12194 1.593196 TTTTGACAGGCGTCTTCTGG 58.407 50.000 10.03 0.00 43.06 3.86
5826 12203 1.874019 CGTCTTCTGGTCATCGGCG 60.874 63.158 0.00 0.00 0.00 6.46
5827 12204 1.519455 GTCTTCTGGTCATCGGCGG 60.519 63.158 7.21 0.00 0.00 6.13
5831 12208 4.457496 CTGGTCATCGGCGGTGCT 62.457 66.667 16.80 0.00 0.00 4.40
5835 12212 0.666577 GGTCATCGGCGGTGCTATAC 60.667 60.000 16.80 8.30 0.00 1.47
5846 12223 2.801699 CGGTGCTATACATCTTTCGGCA 60.802 50.000 0.00 0.00 0.00 5.69
5849 12226 2.103094 TGCTATACATCTTTCGGCAGCT 59.897 45.455 0.00 0.00 0.00 4.24
5855 12232 0.807496 ATCTTTCGGCAGCTCTTTGC 59.193 50.000 0.00 0.00 43.34 3.68
5873 12250 9.030301 GCTCTTTGCTTTTTCTATCTAGTCTAG 57.970 37.037 0.00 0.00 38.95 2.43
5896 12453 7.116075 AGTAGTATTACCAAAATCTACGGCA 57.884 36.000 0.00 0.00 33.73 5.69
5899 12456 7.259290 AGTATTACCAAAATCTACGGCAATG 57.741 36.000 0.00 0.00 0.00 2.82
5907 12464 5.852282 AAATCTACGGCAATGGCTTTATT 57.148 34.783 5.02 0.00 40.87 1.40
5919 12476 5.673337 ATGGCTTTATTGCAGTACGTATG 57.327 39.130 0.00 0.00 34.04 2.39
5923 12480 5.963586 GGCTTTATTGCAGTACGTATGAAAC 59.036 40.000 0.00 0.00 34.04 2.78
5924 12481 6.183360 GGCTTTATTGCAGTACGTATGAAACT 60.183 38.462 0.00 0.00 34.04 2.66
5981 12538 1.135575 CATGGAGAAAGCTTTCGTGCC 60.136 52.381 28.67 28.00 41.92 5.01
5986 12543 0.110644 GAAAGCTTTCGTGCCGAGTG 60.111 55.000 22.66 0.00 37.14 3.51
6025 12582 6.692232 TTTTGGGTTTATTTATTGAACGCG 57.308 33.333 3.53 3.53 38.57 6.01
6028 12585 4.454847 TGGGTTTATTTATTGAACGCGACA 59.545 37.500 15.93 10.17 38.57 4.35
6066 12627 0.107268 ACGTAGCCGGGTTGAACTTT 59.893 50.000 13.43 0.00 38.78 2.66
6071 12632 1.815817 GCCGGGTTGAACTTTGCCAT 61.816 55.000 2.18 0.00 0.00 4.40
6078 12639 2.079170 TGAACTTTGCCATGAACCCA 57.921 45.000 0.00 0.00 0.00 4.51
6079 12640 1.962807 TGAACTTTGCCATGAACCCAG 59.037 47.619 0.00 0.00 0.00 4.45
6087 12649 1.813513 CCATGAACCCAGTGACTGTC 58.186 55.000 12.15 3.32 0.00 3.51
6088 12650 1.349026 CCATGAACCCAGTGACTGTCT 59.651 52.381 12.15 0.00 0.00 3.41
6096 12658 2.567169 CCCAGTGACTGTCTTATGACCA 59.433 50.000 12.15 0.00 42.28 4.02
6108 12670 5.758296 TGTCTTATGACCACTCTTTTGTCAC 59.242 40.000 6.32 0.00 41.40 3.67
6154 12716 0.612174 TGGTGACTCTTCTAGCGGCT 60.612 55.000 7.98 7.98 0.00 5.52
6157 12719 1.067495 GTGACTCTTCTAGCGGCTTGT 60.067 52.381 8.26 0.00 0.00 3.16
6173 12735 3.428862 GGCTTGTCGTATTTTTCCATGGG 60.429 47.826 13.02 0.00 0.00 4.00
6176 12738 3.013921 TGTCGTATTTTTCCATGGGCTC 58.986 45.455 13.02 0.00 0.00 4.70
6177 12739 3.013921 GTCGTATTTTTCCATGGGCTCA 58.986 45.455 13.02 0.00 0.00 4.26
6187 12749 3.364549 TCCATGGGCTCATACCTTTTTG 58.635 45.455 13.02 0.00 31.33 2.44
6188 12750 2.431782 CCATGGGCTCATACCTTTTTGG 59.568 50.000 2.85 0.00 42.93 3.28
6207 12769 6.721571 TTTGGTTGCTAGTAGAAGATTTCG 57.278 37.500 0.00 0.00 34.02 3.46
6220 12782 0.095417 GATTTCGAAGCTGTCACGGC 59.905 55.000 0.00 0.00 35.73 5.68
6232 12794 0.108804 GTCACGGCCGATTCTCTTCA 60.109 55.000 35.90 0.00 0.00 3.02
6235 12797 0.391263 ACGGCCGATTCTCTTCAACC 60.391 55.000 35.90 0.00 0.00 3.77
6237 12799 1.090052 GGCCGATTCTCTTCAACCGG 61.090 60.000 0.00 0.00 39.88 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.814146 CAGTGTCCTTCTCCTGAGTAAATTAC 59.186 42.308 0.00 0.00 0.00 1.89
1 2 6.724441 TCAGTGTCCTTCTCCTGAGTAAATTA 59.276 38.462 0.00 0.00 0.00 1.40
2 3 5.544176 TCAGTGTCCTTCTCCTGAGTAAATT 59.456 40.000 0.00 0.00 0.00 1.82
3 4 5.087323 TCAGTGTCCTTCTCCTGAGTAAAT 58.913 41.667 0.00 0.00 0.00 1.40
4 5 4.480115 TCAGTGTCCTTCTCCTGAGTAAA 58.520 43.478 0.00 0.00 0.00 2.01
5 6 4.082845 CTCAGTGTCCTTCTCCTGAGTAA 58.917 47.826 7.23 0.00 35.11 2.24
6 7 3.562393 CCTCAGTGTCCTTCTCCTGAGTA 60.562 52.174 12.87 0.00 37.27 2.59
7 8 2.524306 CTCAGTGTCCTTCTCCTGAGT 58.476 52.381 7.23 0.00 35.11 3.41
8 9 1.824230 CCTCAGTGTCCTTCTCCTGAG 59.176 57.143 8.23 8.23 38.31 3.35
9 10 1.148027 ACCTCAGTGTCCTTCTCCTGA 59.852 52.381 0.00 0.00 0.00 3.86
10 11 1.548269 GACCTCAGTGTCCTTCTCCTG 59.452 57.143 0.00 0.00 0.00 3.86
19 20 0.106149 AACAACCGGACCTCAGTGTC 59.894 55.000 9.46 0.00 34.42 3.67
35 36 5.227569 TCTTCATCTTCAGGTAGCAAACA 57.772 39.130 0.00 0.00 0.00 2.83
36 37 5.877012 TCATCTTCATCTTCAGGTAGCAAAC 59.123 40.000 0.00 0.00 0.00 2.93
40 41 5.911752 TCTTCATCTTCATCTTCAGGTAGC 58.088 41.667 0.00 0.00 0.00 3.58
51 52 3.624861 GCAACCGACATCTTCATCTTCAT 59.375 43.478 0.00 0.00 0.00 2.57
59 60 2.808543 ACAGAAAGCAACCGACATCTTC 59.191 45.455 0.00 0.00 0.00 2.87
60 61 2.549754 CACAGAAAGCAACCGACATCTT 59.450 45.455 0.00 0.00 0.00 2.40
67 68 3.249917 ACAAAAACACAGAAAGCAACCG 58.750 40.909 0.00 0.00 0.00 4.44
198 199 9.474920 TGCTTCCTGATTTTAAACAAGTTATTG 57.525 29.630 0.00 0.00 42.46 1.90
226 227 7.584122 TGTAGTCCTACCATTAGTTCTGATC 57.416 40.000 2.18 0.00 35.26 2.92
231 232 6.583562 AGCAATGTAGTCCTACCATTAGTTC 58.416 40.000 2.18 0.00 35.26 3.01
286 295 4.411993 TGCGACGAATTATTGCTTGAAA 57.588 36.364 0.00 0.00 0.00 2.69
295 304 7.715265 ACTAGATTTTGATGCGACGAATTAT 57.285 32.000 0.00 0.00 0.00 1.28
296 305 7.096763 CGTACTAGATTTTGATGCGACGAATTA 60.097 37.037 0.00 0.00 0.00 1.40
325 334 5.726793 ACCTAGTCCTTGTCCAGTTTGATAT 59.273 40.000 0.00 0.00 0.00 1.63
330 339 2.299297 CGACCTAGTCCTTGTCCAGTTT 59.701 50.000 0.00 0.00 0.00 2.66
333 342 1.746220 CTCGACCTAGTCCTTGTCCAG 59.254 57.143 0.00 0.00 0.00 3.86
341 350 1.015868 CTCCGTTCTCGACCTAGTCC 58.984 60.000 0.00 0.00 39.71 3.85
343 352 2.083002 GTTCTCCGTTCTCGACCTAGT 58.917 52.381 0.00 0.00 39.71 2.57
363 377 2.698803 TGACCGACAACAGATTGGATG 58.301 47.619 0.00 0.00 40.42 3.51
409 423 6.294397 GCCCATGTAGAATCAAGATCCAATTC 60.294 42.308 0.00 0.00 0.00 2.17
419 482 3.053768 TCACCATGCCCATGTAGAATCAA 60.054 43.478 7.42 0.00 37.11 2.57
420 483 2.509131 TCACCATGCCCATGTAGAATCA 59.491 45.455 7.42 0.00 37.11 2.57
421 484 2.880890 GTCACCATGCCCATGTAGAATC 59.119 50.000 7.42 0.00 37.11 2.52
422 485 2.746142 CGTCACCATGCCCATGTAGAAT 60.746 50.000 7.42 0.00 37.11 2.40
423 486 1.406751 CGTCACCATGCCCATGTAGAA 60.407 52.381 7.42 0.00 37.11 2.10
424 487 0.177836 CGTCACCATGCCCATGTAGA 59.822 55.000 7.42 2.48 37.11 2.59
425 488 0.177836 TCGTCACCATGCCCATGTAG 59.822 55.000 7.42 0.31 37.11 2.74
426 489 0.615850 TTCGTCACCATGCCCATGTA 59.384 50.000 7.42 0.00 37.11 2.29
427 490 0.960364 GTTCGTCACCATGCCCATGT 60.960 55.000 7.42 0.00 37.11 3.21
428 491 0.959867 TGTTCGTCACCATGCCCATG 60.960 55.000 1.28 1.28 38.51 3.66
429 492 0.251121 TTGTTCGTCACCATGCCCAT 60.251 50.000 0.00 0.00 0.00 4.00
430 493 0.251121 ATTGTTCGTCACCATGCCCA 60.251 50.000 0.00 0.00 0.00 5.36
431 494 0.171007 CATTGTTCGTCACCATGCCC 59.829 55.000 0.00 0.00 0.00 5.36
432 495 0.881118 ACATTGTTCGTCACCATGCC 59.119 50.000 0.00 0.00 32.67 4.40
433 496 1.135689 GGACATTGTTCGTCACCATGC 60.136 52.381 0.00 0.00 32.67 4.06
434 497 2.150390 TGGACATTGTTCGTCACCATG 58.850 47.619 0.00 0.00 35.12 3.66
435 498 2.559698 TGGACATTGTTCGTCACCAT 57.440 45.000 0.00 0.00 34.97 3.55
436 499 2.150390 CATGGACATTGTTCGTCACCA 58.850 47.619 0.00 0.00 34.97 4.17
437 500 2.151202 ACATGGACATTGTTCGTCACC 58.849 47.619 0.00 0.00 34.97 4.02
438 501 4.391830 ACATACATGGACATTGTTCGTCAC 59.608 41.667 0.00 0.00 34.97 3.67
439 502 4.391523 CACATACATGGACATTGTTCGTCA 59.608 41.667 0.00 0.00 34.97 4.35
440 503 4.629634 TCACATACATGGACATTGTTCGTC 59.370 41.667 0.00 0.00 0.00 4.20
441 504 4.574892 TCACATACATGGACATTGTTCGT 58.425 39.130 0.00 0.00 0.00 3.85
442 505 4.034394 CCTCACATACATGGACATTGTTCG 59.966 45.833 0.00 0.00 0.00 3.95
443 506 4.943705 ACCTCACATACATGGACATTGTTC 59.056 41.667 0.00 0.00 0.00 3.18
444 507 4.701651 CACCTCACATACATGGACATTGTT 59.298 41.667 0.00 0.00 0.00 2.83
445 508 4.264253 CACCTCACATACATGGACATTGT 58.736 43.478 0.00 0.00 0.00 2.71
446 509 3.065786 GCACCTCACATACATGGACATTG 59.934 47.826 0.00 0.00 0.00 2.82
447 510 3.282021 GCACCTCACATACATGGACATT 58.718 45.455 0.00 0.00 0.00 2.71
448 511 2.421952 GGCACCTCACATACATGGACAT 60.422 50.000 0.00 0.00 0.00 3.06
449 512 1.065491 GGCACCTCACATACATGGACA 60.065 52.381 0.00 0.00 0.00 4.02
450 513 1.210478 AGGCACCTCACATACATGGAC 59.790 52.381 0.00 0.00 0.00 4.02
451 514 1.583556 AGGCACCTCACATACATGGA 58.416 50.000 0.00 0.00 0.00 3.41
452 515 2.803133 CGTAGGCACCTCACATACATGG 60.803 54.545 0.00 0.00 0.00 3.66
453 516 2.159099 ACGTAGGCACCTCACATACATG 60.159 50.000 0.00 0.00 0.00 3.21
454 517 2.108168 ACGTAGGCACCTCACATACAT 58.892 47.619 0.00 0.00 0.00 2.29
455 518 1.552578 ACGTAGGCACCTCACATACA 58.447 50.000 0.00 0.00 0.00 2.29
456 519 2.223665 GGTACGTAGGCACCTCACATAC 60.224 54.545 0.00 0.00 34.45 2.39
457 520 2.026641 GGTACGTAGGCACCTCACATA 58.973 52.381 0.00 0.00 34.45 2.29
458 521 0.822164 GGTACGTAGGCACCTCACAT 59.178 55.000 0.00 0.00 34.45 3.21
459 522 2.269978 GGTACGTAGGCACCTCACA 58.730 57.895 0.00 0.00 34.45 3.58
473 536 2.187163 GGCTTCTCTGCCCGGTAC 59.813 66.667 0.00 0.00 46.82 3.34
513 576 2.027314 CGATCTGCAGAGGAGCCG 59.973 66.667 22.96 15.04 0.00 5.52
536 603 2.514824 GCCGGCTGATCCTGTTCC 60.515 66.667 22.15 0.00 0.00 3.62
577 644 5.648092 GTCTTCTTCTTCTCTCTAGCTGTCT 59.352 44.000 0.00 0.00 0.00 3.41
578 645 5.447279 CGTCTTCTTCTTCTCTCTAGCTGTC 60.447 48.000 0.00 0.00 0.00 3.51
579 646 4.394920 CGTCTTCTTCTTCTCTCTAGCTGT 59.605 45.833 0.00 0.00 0.00 4.40
580 647 4.634004 TCGTCTTCTTCTTCTCTCTAGCTG 59.366 45.833 0.00 0.00 0.00 4.24
582 649 4.493545 CGTCGTCTTCTTCTTCTCTCTAGC 60.494 50.000 0.00 0.00 0.00 3.42
583 650 4.033587 CCGTCGTCTTCTTCTTCTCTCTAG 59.966 50.000 0.00 0.00 0.00 2.43
584 651 3.933955 CCGTCGTCTTCTTCTTCTCTCTA 59.066 47.826 0.00 0.00 0.00 2.43
585 652 2.745281 CCGTCGTCTTCTTCTTCTCTCT 59.255 50.000 0.00 0.00 0.00 3.10
586 653 2.729778 GCCGTCGTCTTCTTCTTCTCTC 60.730 54.545 0.00 0.00 0.00 3.20
587 654 1.200484 GCCGTCGTCTTCTTCTTCTCT 59.800 52.381 0.00 0.00 0.00 3.10
588 655 1.619983 GCCGTCGTCTTCTTCTTCTC 58.380 55.000 0.00 0.00 0.00 2.87
589 656 0.109689 CGCCGTCGTCTTCTTCTTCT 60.110 55.000 0.00 0.00 0.00 2.85
590 657 1.071567 CCGCCGTCGTCTTCTTCTTC 61.072 60.000 0.00 0.00 0.00 2.87
712 779 4.498520 AGCGACATCGGAGCGTGG 62.499 66.667 3.08 0.00 40.23 4.94
713 780 2.951745 GAGCGACATCGGAGCGTG 60.952 66.667 3.08 0.00 40.23 5.34
714 781 4.194720 GGAGCGACATCGGAGCGT 62.195 66.667 3.08 0.00 40.23 5.07
786 1232 1.994399 TGGGTCCATTTAGGGTCCAT 58.006 50.000 0.00 0.00 35.79 3.41
791 1237 3.914771 ACAATGATGGGTCCATTTAGGG 58.085 45.455 3.77 0.00 36.70 3.53
799 1245 1.205417 CTGCCAAACAATGATGGGTCC 59.795 52.381 10.71 0.00 37.19 4.46
800 1246 1.404583 GCTGCCAAACAATGATGGGTC 60.405 52.381 10.71 0.00 37.19 4.46
802 1248 0.609151 TGCTGCCAAACAATGATGGG 59.391 50.000 10.71 0.00 37.19 4.00
803 1249 1.717194 GTGCTGCCAAACAATGATGG 58.283 50.000 0.00 5.67 39.80 3.51
804 1250 1.068402 TCGTGCTGCCAAACAATGATG 60.068 47.619 0.00 0.00 0.00 3.07
806 1252 0.310543 GTCGTGCTGCCAAACAATGA 59.689 50.000 0.00 0.00 0.00 2.57
810 1256 2.186160 CAGGTCGTGCTGCCAAACA 61.186 57.895 0.00 0.00 0.00 2.83
811 1257 1.444119 TTCAGGTCGTGCTGCCAAAC 61.444 55.000 0.00 0.00 0.00 2.93
815 1261 2.743928 CCTTCAGGTCGTGCTGCC 60.744 66.667 0.00 0.00 0.00 4.85
816 1262 2.731691 TTCCCTTCAGGTCGTGCTGC 62.732 60.000 0.00 0.00 36.75 5.25
817 1263 0.250295 TTTCCCTTCAGGTCGTGCTG 60.250 55.000 0.00 0.00 36.75 4.41
819 1265 0.034896 TCTTTCCCTTCAGGTCGTGC 59.965 55.000 0.00 0.00 36.75 5.34
820 1266 1.618837 TCTCTTTCCCTTCAGGTCGTG 59.381 52.381 0.00 0.00 36.75 4.35
822 1268 2.898705 CATCTCTTTCCCTTCAGGTCG 58.101 52.381 0.00 0.00 36.75 4.79
823 1269 2.637947 GCATCTCTTTCCCTTCAGGTC 58.362 52.381 0.00 0.00 36.75 3.85
824 1270 1.283321 GGCATCTCTTTCCCTTCAGGT 59.717 52.381 0.00 0.00 36.75 4.00
825 1271 1.409381 GGGCATCTCTTTCCCTTCAGG 60.409 57.143 0.00 0.00 37.08 3.86
829 4284 2.558350 CCTTTGGGCATCTCTTTCCCTT 60.558 50.000 0.00 0.00 40.69 3.95
1248 4719 3.160748 GGAGGAGGAGGAGCAGGC 61.161 72.222 0.00 0.00 0.00 4.85
1274 4758 0.183731 GCATCTTAGGGTTGAGGGGG 59.816 60.000 0.00 0.00 0.00 5.40
1368 4853 2.439156 AGGAGCGCCCTTGCAATC 60.439 61.111 2.29 0.00 44.85 2.67
1401 4886 1.236616 TGCAGGTGAGTTTGATGCCG 61.237 55.000 0.00 0.00 36.04 5.69
1431 4916 4.318332 TGAGCAACTCATAAGACAACAGG 58.682 43.478 0.00 0.00 35.39 4.00
1456 7499 2.376518 AGAACTTCCATCCCAAGAGCAA 59.623 45.455 0.00 0.00 0.00 3.91
1457 7500 1.988107 AGAACTTCCATCCCAAGAGCA 59.012 47.619 0.00 0.00 0.00 4.26
1466 7509 5.300752 TGAAGTCACTTCAGAACTTCCATC 58.699 41.667 16.67 0.00 44.27 3.51
1507 7557 4.625311 GCACTAATATGCACACAAAAACCC 59.375 41.667 0.00 0.00 45.39 4.11
1508 7558 5.761818 GCACTAATATGCACACAAAAACC 57.238 39.130 0.00 0.00 45.39 3.27
1536 7586 5.391629 GGGGATTACGAAATGTTGTCTTGAC 60.392 44.000 0.00 0.00 0.00 3.18
1538 7588 4.457603 TGGGGATTACGAAATGTTGTCTTG 59.542 41.667 0.00 0.00 0.00 3.02
1558 7608 7.866393 GCAAGATAAATCAAATGATCTCTTGGG 59.134 37.037 25.27 13.93 40.74 4.12
1607 7657 4.000988 AGGGCTTCGTTATGTGTTTACTG 58.999 43.478 0.00 0.00 0.00 2.74
1616 7666 3.254657 TCCAACAAAAGGGCTTCGTTATG 59.745 43.478 0.00 0.00 0.00 1.90
1636 7686 3.740832 CCTTTTCGGCAGATTTTTGTTCC 59.259 43.478 0.00 0.00 0.00 3.62
1729 7779 3.023119 ACATGGACTACTCTCTCTGCAG 58.977 50.000 7.63 7.63 0.00 4.41
1766 7816 0.594602 ATGGCATATGATGTGCACGC 59.405 50.000 15.93 7.23 44.25 5.34
1805 7855 5.393787 CCTGTTGTATAGCGAGACCAAAGTA 60.394 44.000 0.00 0.00 0.00 2.24
1831 7881 1.580132 GCAGCGCCACGAAAATACG 60.580 57.895 2.29 0.00 39.31 3.06
1849 7901 3.130633 TGATAAGTGGATCGATTTGGCG 58.869 45.455 0.00 0.00 0.00 5.69
2047 8101 0.246635 AGGACATAGTGTGCACGGAC 59.753 55.000 13.13 5.72 41.46 4.79
2121 8176 4.518278 ATGTGATATTGCCCACTAACCA 57.482 40.909 0.00 0.00 34.57 3.67
2153 8208 7.282450 ACAGTAGGAACGATATATATCATGCGA 59.718 37.037 20.18 8.91 32.98 5.10
2154 8209 7.418408 ACAGTAGGAACGATATATATCATGCG 58.582 38.462 20.18 10.78 32.98 4.73
2166 8221 1.825474 CCACCTGACAGTAGGAACGAT 59.175 52.381 0.93 0.00 40.42 3.73
2168 8223 1.254026 TCCACCTGACAGTAGGAACG 58.746 55.000 9.91 0.00 40.42 3.95
2172 8227 1.137086 CGGAATCCACCTGACAGTAGG 59.863 57.143 0.00 2.96 43.71 3.18
2219 8274 5.653769 CCAATGGATGTAGTTGGATCTGTTT 59.346 40.000 0.00 0.00 43.98 2.83
2278 8333 5.070446 ACTGTCTCACTTGAGTTGGACATTA 59.930 40.000 6.15 0.00 42.60 1.90
2282 8337 3.126831 CACTGTCTCACTTGAGTTGGAC 58.873 50.000 6.15 0.80 42.60 4.02
2351 8406 1.220749 GCCCAGTAACGATGCTCCA 59.779 57.895 0.00 0.00 0.00 3.86
2407 8462 3.701205 TGCTTCATGGAACTTCTAGCA 57.299 42.857 0.00 0.00 35.05 3.49
2408 8463 6.709846 AGATTATGCTTCATGGAACTTCTAGC 59.290 38.462 0.00 0.00 0.00 3.42
2418 8473 5.884792 GGGATTCCTAGATTATGCTTCATGG 59.115 44.000 2.01 0.00 0.00 3.66
2431 8486 4.901785 AGGTCACTAAGGGATTCCTAGA 57.098 45.455 0.00 0.00 44.07 2.43
2467 8522 2.242965 TCCAACTGAGCATGGATCCATT 59.757 45.455 25.20 11.84 40.74 3.16
2469 8524 1.288188 TCCAACTGAGCATGGATCCA 58.712 50.000 18.88 18.88 40.74 3.41
2495 8551 4.692155 TGCAACATCAGTCACATCTACAAG 59.308 41.667 0.00 0.00 0.00 3.16
2518 8574 4.018050 ACATTCCTCTTAGCCCATTCAAGT 60.018 41.667 0.00 0.00 0.00 3.16
2641 8697 1.980765 ACTGGCTCTGGAATGTTCTCA 59.019 47.619 0.00 0.00 0.00 3.27
2649 8705 0.764369 ACTGTCCACTGGCTCTGGAA 60.764 55.000 5.42 0.00 39.60 3.53
2651 8707 1.004080 CACTGTCCACTGGCTCTGG 60.004 63.158 0.00 0.00 0.00 3.86
2678 8734 4.081697 ACCCACAAAAATAGGTGCTATTGC 60.082 41.667 0.00 0.00 36.85 3.56
2721 8777 5.182001 GGATTGCACATACAGAAGTCAAAGT 59.818 40.000 0.00 0.00 0.00 2.66
2749 8805 5.428131 AGCTTCCTCCATACTCTCAAAGAAT 59.572 40.000 0.00 0.00 0.00 2.40
2875 8931 8.746052 TGAATCACCTGAAAGAGTTCTTAAAA 57.254 30.769 0.00 0.00 34.61 1.52
3022 9079 1.466167 CAGCTTCACGGACTTTGGATG 59.534 52.381 0.00 0.00 0.00 3.51
3089 9146 1.831286 CCATGCAAGGCCCCATCTC 60.831 63.158 0.00 0.00 0.00 2.75
3274 9331 7.606456 TCATTGGAGAACAGTAACCTTTATGAC 59.394 37.037 0.00 0.00 0.00 3.06
3355 9415 6.763135 ACACGAATTAATGCTATCTGTGATGT 59.237 34.615 5.66 0.00 0.00 3.06
3376 9436 3.126343 GGGAGTAACATTTAAGGCACACG 59.874 47.826 0.00 0.00 0.00 4.49
3440 9500 7.652507 GTGACTCAACTTTGTACTAGCTTTAGT 59.347 37.037 0.00 0.00 0.00 2.24
3441 9501 7.868415 AGTGACTCAACTTTGTACTAGCTTTAG 59.132 37.037 0.00 0.00 0.00 1.85
3442 9502 7.723324 AGTGACTCAACTTTGTACTAGCTTTA 58.277 34.615 0.00 0.00 0.00 1.85
3446 9506 8.535690 AATAAGTGACTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
3457 9517 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3463 9534 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3489 9560 4.926860 TGCTACAAACAACGATGAGATG 57.073 40.909 0.00 0.00 0.00 2.90
3514 9613 4.204012 AGAATTGGTCAACAAGGACGAAA 58.796 39.130 0.00 0.00 43.48 3.46
3630 9793 5.826737 AGACCCTGAAATTCATTATGCAGAG 59.173 40.000 0.00 0.00 0.00 3.35
3631 9794 5.759059 AGACCCTGAAATTCATTATGCAGA 58.241 37.500 0.00 0.00 0.00 4.26
3673 9838 3.567164 CAGCTGACTTCAACACCTGAAAT 59.433 43.478 8.42 0.00 43.54 2.17
3794 9959 6.648310 GTGGGTCTCTGTCATGATGTTATATG 59.352 42.308 0.00 0.00 0.00 1.78
3806 9971 2.015456 ATCAGTGTGGGTCTCTGTCA 57.985 50.000 0.00 0.00 38.39 3.58
3892 10063 3.812053 GCTCATCTGGCAATGTAACCTAG 59.188 47.826 8.72 0.00 0.00 3.02
4050 10221 6.726299 TCAGGCAAAGTAGATATAGGTAGCAT 59.274 38.462 0.00 0.00 0.00 3.79
4102 10273 3.189287 CAGGCATCTGTTCAAACACCTAC 59.811 47.826 3.31 0.00 32.01 3.18
4232 10403 1.742831 TGCGATGTATTGAAGCAACCC 59.257 47.619 0.00 0.00 34.66 4.11
4263 10435 5.713807 ACGGAGGGAGTATAAGGTAAAGAT 58.286 41.667 0.00 0.00 0.00 2.40
4296 10532 9.751542 AATGGATTTATCTAGAACTACGACAAG 57.248 33.333 0.00 0.00 0.00 3.16
4304 10540 9.225682 TGGGTAGAAATGGATTTATCTAGAACT 57.774 33.333 0.00 0.00 0.00 3.01
4311 10547 9.045223 GCAAAAATGGGTAGAAATGGATTTATC 57.955 33.333 0.00 0.00 0.00 1.75
4313 10549 7.038659 CGCAAAAATGGGTAGAAATGGATTTA 58.961 34.615 0.00 0.00 0.00 1.40
4314 10550 5.874261 CGCAAAAATGGGTAGAAATGGATTT 59.126 36.000 0.00 0.00 0.00 2.17
4317 10553 4.082463 GTCGCAAAAATGGGTAGAAATGGA 60.082 41.667 0.00 0.00 0.00 3.41
4318 10554 4.082245 AGTCGCAAAAATGGGTAGAAATGG 60.082 41.667 0.00 0.00 0.00 3.16
4319 10555 5.059404 AGTCGCAAAAATGGGTAGAAATG 57.941 39.130 0.00 0.00 0.00 2.32
4320 10556 5.944007 ACTAGTCGCAAAAATGGGTAGAAAT 59.056 36.000 0.00 0.00 0.00 2.17
4321 10557 5.310451 ACTAGTCGCAAAAATGGGTAGAAA 58.690 37.500 0.00 0.00 0.00 2.52
4323 10559 4.546829 ACTAGTCGCAAAAATGGGTAGA 57.453 40.909 0.00 0.00 0.00 2.59
4327 10563 5.804979 CCAAATTACTAGTCGCAAAAATGGG 59.195 40.000 0.00 0.00 0.00 4.00
4328 10564 6.526674 GTCCAAATTACTAGTCGCAAAAATGG 59.473 38.462 0.00 1.80 0.00 3.16
4329 10565 7.081349 TGTCCAAATTACTAGTCGCAAAAATG 58.919 34.615 0.00 0.00 0.00 2.32
4330 10566 7.174253 TCTGTCCAAATTACTAGTCGCAAAAAT 59.826 33.333 0.00 0.00 0.00 1.82
4332 10568 5.992829 TCTGTCCAAATTACTAGTCGCAAAA 59.007 36.000 0.00 0.00 0.00 2.44
4333 10569 5.543714 TCTGTCCAAATTACTAGTCGCAAA 58.456 37.500 0.00 0.00 0.00 3.68
4335 10571 4.381612 CCTCTGTCCAAATTACTAGTCGCA 60.382 45.833 0.00 0.00 0.00 5.10
4336 10572 4.113354 CCTCTGTCCAAATTACTAGTCGC 58.887 47.826 0.00 0.00 0.00 5.19
4337 10573 4.401519 TCCCTCTGTCCAAATTACTAGTCG 59.598 45.833 0.00 0.00 0.00 4.18
4338 10574 5.934402 TCCCTCTGTCCAAATTACTAGTC 57.066 43.478 0.00 0.00 0.00 2.59
4347 10583 9.225682 AGAAACTATATATTCCCTCTGTCCAAA 57.774 33.333 0.00 0.00 0.00 3.28
4348 10584 8.798975 AGAAACTATATATTCCCTCTGTCCAA 57.201 34.615 0.00 0.00 0.00 3.53
4368 10604 9.797556 AAGTGGTAAAAACTGAAACATAGAAAC 57.202 29.630 0.00 0.00 0.00 2.78
4372 10633 7.936584 TGGAAGTGGTAAAAACTGAAACATAG 58.063 34.615 0.00 0.00 0.00 2.23
4405 10669 3.418684 AACACAACGGAATCTAGGCTT 57.581 42.857 0.00 0.00 0.00 4.35
4418 10682 3.734735 GGAACTCTCTGTCGTAACACAAC 59.265 47.826 0.00 0.00 0.00 3.32
4421 10685 2.667724 CGGGAACTCTCTGTCGTAACAC 60.668 54.545 0.00 0.00 0.00 3.32
4423 10687 1.808945 TCGGGAACTCTCTGTCGTAAC 59.191 52.381 0.00 0.00 0.00 2.50
4428 10692 3.444388 ACTTGTATCGGGAACTCTCTGTC 59.556 47.826 0.00 0.00 0.00 3.51
4441 10726 4.378046 GGCTTGTGTGGTAAACTTGTATCG 60.378 45.833 0.00 0.00 0.00 2.92
4452 10737 4.481368 AAATATCTCGGCTTGTGTGGTA 57.519 40.909 0.00 0.00 0.00 3.25
4465 10750 6.262720 ACTCCACACTACTCGGTAAATATCTC 59.737 42.308 0.00 0.00 0.00 2.75
4497 10786 0.616111 TGGCTTTGTGGGGTGTTTGT 60.616 50.000 0.00 0.00 0.00 2.83
4510 10799 4.865925 GGTAGTTTGTTCGTTTTTGGCTTT 59.134 37.500 0.00 0.00 0.00 3.51
4515 10804 6.583050 TCACTTTGGTAGTTTGTTCGTTTTTG 59.417 34.615 0.00 0.00 33.85 2.44
4516 10805 6.583427 GTCACTTTGGTAGTTTGTTCGTTTTT 59.417 34.615 0.00 0.00 33.85 1.94
4522 10811 5.585047 AGACTGTCACTTTGGTAGTTTGTTC 59.415 40.000 10.88 0.00 33.85 3.18
4788 11077 1.371337 CGCCATGCATATGATCCGGG 61.371 60.000 6.97 0.00 36.36 5.73
4846 11146 8.716674 ATATGATCCTGTATGCCTGAATTTTT 57.283 30.769 0.00 0.00 0.00 1.94
4849 11149 6.070596 TCGATATGATCCTGTATGCCTGAATT 60.071 38.462 0.00 0.00 0.00 2.17
4850 11150 5.423290 TCGATATGATCCTGTATGCCTGAAT 59.577 40.000 0.00 0.00 0.00 2.57
4892 11193 9.468532 TGAATATGAGAAGTGACATCTTATTCG 57.531 33.333 13.28 0.00 39.99 3.34
4909 11210 2.174363 TCATGCGGCCTGAATATGAG 57.826 50.000 5.44 0.00 0.00 2.90
4921 11222 1.512996 CCTATGCTGCCTTCATGCGG 61.513 60.000 0.00 0.00 40.70 5.69
4931 11232 1.261619 GCATCGTGTAACCTATGCTGC 59.738 52.381 0.00 0.00 44.70 5.25
5001 11303 4.141528 ACTGCTAGATTTGGATTCCAGAGG 60.142 45.833 5.36 0.00 33.81 3.69
5005 11307 3.889815 CCACTGCTAGATTTGGATTCCA 58.110 45.455 0.00 0.00 0.00 3.53
5047 11386 9.612620 CAGTTTTATCATAAGAAAGTGTTGTCC 57.387 33.333 0.00 0.00 32.01 4.02
5078 11418 0.670162 AAGCCATCGGTGCAATATGC 59.330 50.000 0.00 0.00 45.29 3.14
5093 11433 2.892425 CCGCGATCCACAGAAGCC 60.892 66.667 8.23 0.00 0.00 4.35
5109 11449 0.608035 TGGACCTTTGTTCATCGCCC 60.608 55.000 0.00 0.00 0.00 6.13
5117 11457 7.710475 CACAATAAAATCAGTTGGACCTTTGTT 59.290 33.333 0.00 0.00 0.00 2.83
5159 11500 5.903810 AGAGAATACCGATGGTTTAGTGTC 58.096 41.667 0.00 0.00 37.09 3.67
5160 11501 5.657302 AGAGAGAATACCGATGGTTTAGTGT 59.343 40.000 0.00 0.00 37.09 3.55
5161 11502 5.980116 CAGAGAGAATACCGATGGTTTAGTG 59.020 44.000 0.00 0.00 37.09 2.74
5162 11503 5.452077 GCAGAGAGAATACCGATGGTTTAGT 60.452 44.000 0.00 0.00 37.09 2.24
5165 11506 3.197766 TGCAGAGAGAATACCGATGGTTT 59.802 43.478 0.00 0.00 37.09 3.27
5171 11512 2.145397 ACCTGCAGAGAGAATACCGA 57.855 50.000 17.39 0.00 0.00 4.69
5172 11513 2.034812 GGTACCTGCAGAGAGAATACCG 59.965 54.545 17.39 0.00 0.00 4.02
5277 11634 1.676006 CATGATTAAGGCCCCGTTGAC 59.324 52.381 0.00 0.00 0.00 3.18
5278 11635 1.562008 TCATGATTAAGGCCCCGTTGA 59.438 47.619 0.00 0.00 0.00 3.18
5279 11636 2.051334 TCATGATTAAGGCCCCGTTG 57.949 50.000 0.00 0.00 0.00 4.10
5280 11637 2.291282 TGTTCATGATTAAGGCCCCGTT 60.291 45.455 0.00 0.00 0.00 4.44
5282 11639 2.051334 TGTTCATGATTAAGGCCCCG 57.949 50.000 0.00 0.00 0.00 5.73
5284 11641 2.223572 CGCTTGTTCATGATTAAGGCCC 60.224 50.000 16.62 4.55 0.00 5.80
5303 11661 4.392138 GGTTACAATAATAGCCTCATCCGC 59.608 45.833 0.00 0.00 0.00 5.54
5309 11667 4.072839 GCAGGGGTTACAATAATAGCCTC 58.927 47.826 0.00 0.00 0.00 4.70
5327 11685 0.251077 AAAGAGTTCAGGCCAGCAGG 60.251 55.000 5.01 0.00 38.23 4.85
5336 11694 3.312421 TCTTGGCGTTGAAAAGAGTTCAG 59.688 43.478 0.00 0.00 0.00 3.02
5454 11815 1.832883 TGGAATTGGAATCGGGTGTG 58.167 50.000 0.00 0.00 0.00 3.82
5460 11821 5.779529 AGATGGAATTGGAATTGGAATCG 57.220 39.130 0.00 0.00 0.00 3.34
5462 11823 6.600427 GCAAAAGATGGAATTGGAATTGGAAT 59.400 34.615 0.00 0.00 0.00 3.01
5463 11824 5.939296 GCAAAAGATGGAATTGGAATTGGAA 59.061 36.000 0.00 0.00 0.00 3.53
5464 11825 5.248934 AGCAAAAGATGGAATTGGAATTGGA 59.751 36.000 0.00 0.00 0.00 3.53
5465 11826 5.353123 CAGCAAAAGATGGAATTGGAATTGG 59.647 40.000 0.00 0.00 0.00 3.16
5466 11827 5.163794 GCAGCAAAAGATGGAATTGGAATTG 60.164 40.000 0.00 0.00 0.00 2.32
5467 11828 4.939439 GCAGCAAAAGATGGAATTGGAATT 59.061 37.500 0.00 0.00 0.00 2.17
5487 11848 4.529219 TGGTAGGCATCGGCGCAG 62.529 66.667 10.83 5.07 42.47 5.18
5488 11849 4.529219 CTGGTAGGCATCGGCGCA 62.529 66.667 10.83 0.00 42.47 6.09
5612 11987 1.952133 TTCGTTTCTCGTGTGGGCG 60.952 57.895 0.00 0.00 40.80 6.13
5615 11990 1.137513 GAGGTTCGTTTCTCGTGTGG 58.862 55.000 0.00 0.00 40.80 4.17
5674 12051 1.135315 CGGTGCATCTCCAAAAGCG 59.865 57.895 0.00 0.00 0.00 4.68
5734 12111 2.345760 CGCAAAATGGCAGCTCCCT 61.346 57.895 0.00 0.00 0.00 4.20
5739 12116 1.006337 TCAACCGCAAAATGGCAGC 60.006 52.632 0.00 0.00 0.00 5.25
5775 12152 2.048597 TGCCGGACTGCTAACACG 60.049 61.111 5.05 0.00 0.00 4.49
5779 12156 4.451150 CGGCTGCCGGACTGCTAA 62.451 66.667 32.37 0.00 44.15 3.09
5805 12182 1.513158 CGATGACCAGAAGACGCCT 59.487 57.895 0.00 0.00 0.00 5.52
5810 12187 1.982395 ACCGCCGATGACCAGAAGA 60.982 57.895 0.00 0.00 0.00 2.87
5817 12194 0.031585 TGTATAGCACCGCCGATGAC 59.968 55.000 0.00 0.00 0.00 3.06
5826 12203 2.802816 CTGCCGAAAGATGTATAGCACC 59.197 50.000 0.00 0.00 0.00 5.01
5827 12204 2.221981 GCTGCCGAAAGATGTATAGCAC 59.778 50.000 0.00 0.00 0.00 4.40
5831 12208 4.672587 AAGAGCTGCCGAAAGATGTATA 57.327 40.909 0.00 0.00 0.00 1.47
5835 12212 1.467035 GCAAAGAGCTGCCGAAAGATG 60.467 52.381 0.00 0.00 41.15 2.90
5868 12245 9.890352 CCGTAGATTTTGGTAATACTACTAGAC 57.110 37.037 0.00 0.00 0.00 2.59
5869 12246 8.571336 GCCGTAGATTTTGGTAATACTACTAGA 58.429 37.037 0.00 0.00 0.00 2.43
5870 12247 8.355169 TGCCGTAGATTTTGGTAATACTACTAG 58.645 37.037 0.00 0.00 0.00 2.57
5873 12250 7.775397 TTGCCGTAGATTTTGGTAATACTAC 57.225 36.000 0.00 0.00 0.00 2.73
5876 12253 6.435428 CCATTGCCGTAGATTTTGGTAATAC 58.565 40.000 0.00 0.00 36.16 1.89
5877 12254 5.009210 GCCATTGCCGTAGATTTTGGTAATA 59.991 40.000 0.00 0.00 36.16 0.98
5879 12256 3.129638 GCCATTGCCGTAGATTTTGGTAA 59.870 43.478 0.00 0.00 0.00 2.85
5880 12257 2.685897 GCCATTGCCGTAGATTTTGGTA 59.314 45.455 0.00 0.00 0.00 3.25
5896 12453 5.820423 TCATACGTACTGCAATAAAGCCATT 59.180 36.000 0.00 0.00 0.00 3.16
5899 12456 5.728351 TTCATACGTACTGCAATAAAGCC 57.272 39.130 0.00 0.00 0.00 4.35
5909 12466 1.924524 CCGGCAGTTTCATACGTACTG 59.075 52.381 10.42 10.42 41.64 2.74
5952 12509 1.210478 GCTTTCTCCATGTAGGCTCCA 59.790 52.381 0.00 0.00 37.29 3.86
5953 12510 1.488393 AGCTTTCTCCATGTAGGCTCC 59.512 52.381 0.00 0.00 37.29 4.70
5954 12511 2.998316 AGCTTTCTCCATGTAGGCTC 57.002 50.000 0.00 0.00 37.29 4.70
5955 12512 3.615155 GAAAGCTTTCTCCATGTAGGCT 58.385 45.455 28.16 0.00 37.29 4.58
5981 12538 2.386661 AATTGGGTACTCTGCACTCG 57.613 50.000 0.00 0.00 0.00 4.18
6006 12563 4.789629 GTGTCGCGTTCAATAAATAAACCC 59.210 41.667 5.77 0.00 0.00 4.11
6043 12604 2.817470 TTCAACCCGGCTACGTACGC 62.817 60.000 16.72 0.00 38.78 4.42
6066 12627 0.250858 CAGTCACTGGGTTCATGGCA 60.251 55.000 0.00 0.00 0.00 4.92
6071 12632 3.901222 TCATAAGACAGTCACTGGGTTCA 59.099 43.478 10.28 0.00 35.51 3.18
6078 12639 4.411927 AGAGTGGTCATAAGACAGTCACT 58.588 43.478 2.66 7.82 46.80 3.41
6079 12640 4.792521 AGAGTGGTCATAAGACAGTCAC 57.207 45.455 2.66 0.00 46.80 3.67
6087 12649 4.152402 CCGTGACAAAAGAGTGGTCATAAG 59.848 45.833 0.00 0.00 42.81 1.73
6088 12650 4.062293 CCGTGACAAAAGAGTGGTCATAA 58.938 43.478 0.00 0.00 42.81 1.90
6096 12658 0.535102 CTGGCCCGTGACAAAAGAGT 60.535 55.000 0.00 0.00 0.00 3.24
6137 12699 1.067495 ACAAGCCGCTAGAAGAGTCAC 60.067 52.381 0.00 0.00 0.00 3.67
6154 12716 3.426615 AGCCCATGGAAAAATACGACAA 58.573 40.909 15.22 0.00 0.00 3.18
6157 12719 3.358111 TGAGCCCATGGAAAAATACGA 57.642 42.857 15.22 0.00 0.00 3.43
6187 12749 5.005875 GCTTCGAAATCTTCTACTAGCAACC 59.994 44.000 0.00 0.00 0.00 3.77
6188 12750 5.808030 AGCTTCGAAATCTTCTACTAGCAAC 59.192 40.000 0.00 0.00 0.00 4.17
6189 12751 5.807520 CAGCTTCGAAATCTTCTACTAGCAA 59.192 40.000 0.00 0.00 0.00 3.91
6190 12752 5.105716 ACAGCTTCGAAATCTTCTACTAGCA 60.106 40.000 0.00 0.00 0.00 3.49
6191 12753 5.344884 ACAGCTTCGAAATCTTCTACTAGC 58.655 41.667 0.00 0.00 0.00 3.42
6192 12754 6.470877 GTGACAGCTTCGAAATCTTCTACTAG 59.529 42.308 0.00 0.00 0.00 2.57
6193 12755 6.323266 GTGACAGCTTCGAAATCTTCTACTA 58.677 40.000 0.00 0.00 0.00 1.82
6194 12756 5.164954 GTGACAGCTTCGAAATCTTCTACT 58.835 41.667 0.00 0.00 0.00 2.57
6195 12757 4.030753 CGTGACAGCTTCGAAATCTTCTAC 59.969 45.833 0.00 0.00 0.00 2.59
6196 12758 4.166523 CGTGACAGCTTCGAAATCTTCTA 58.833 43.478 0.00 0.00 0.00 2.10
6197 12759 2.989840 CGTGACAGCTTCGAAATCTTCT 59.010 45.455 0.00 0.00 0.00 2.85
6198 12760 2.092838 CCGTGACAGCTTCGAAATCTTC 59.907 50.000 0.00 0.00 0.00 2.87
6207 12769 1.696832 GAATCGGCCGTGACAGCTTC 61.697 60.000 27.15 13.11 0.00 3.86
6232 12794 5.889853 TGATGACTACTTGTAGATACCGGTT 59.110 40.000 15.04 0.00 0.00 4.44
6235 12797 6.431278 CAGTGATGACTACTTGTAGATACCG 58.569 44.000 13.95 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.