Multiple sequence alignment - TraesCS6A01G068300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G068300 chr6A 100.000 4869 0 0 1 4869 36683239 36688107 0.000000e+00 8992
1 TraesCS6A01G068300 chr6A 85.106 376 32 11 1245 1606 603056064 603056429 3.580000e-96 363
2 TraesCS6A01G068300 chr6D 92.057 2027 101 20 1994 3993 32297992 32299985 0.000000e+00 2796
3 TraesCS6A01G068300 chr6D 88.735 506 23 14 1222 1724 32297128 32297602 5.430000e-164 588
4 TraesCS6A01G068300 chr6D 85.131 612 33 19 592 1198 32296506 32297064 1.520000e-159 573
5 TraesCS6A01G068300 chr6D 79.124 388 54 18 4384 4754 403665695 403666072 4.870000e-60 243
6 TraesCS6A01G068300 chr6B 90.714 1906 120 25 2454 4330 67939682 67941559 0.000000e+00 2486
7 TraesCS6A01G068300 chr6B 87.597 774 40 15 449 1210 67937710 67938439 0.000000e+00 846
8 TraesCS6A01G068300 chr6B 85.152 559 37 18 4330 4866 67941622 67942156 9.280000e-147 531
9 TraesCS6A01G068300 chr6B 85.524 525 25 21 1222 1724 67938483 67938978 7.280000e-138 501
10 TraesCS6A01G068300 chr6B 92.690 342 21 3 2006 2344 67939253 67939593 1.570000e-134 490
11 TraesCS6A01G068300 chr6B 89.811 265 26 1 155 419 67937280 67937543 6.040000e-89 339
12 TraesCS6A01G068300 chr6B 92.090 177 14 0 1 177 67937069 67937245 2.910000e-62 250
13 TraesCS6A01G068300 chr6B 75.712 527 93 21 4349 4868 544796848 544796350 1.050000e-56 231
14 TraesCS6A01G068300 chr6B 86.047 129 13 2 1727 1854 67939015 67939139 3.060000e-27 134
15 TraesCS6A01G068300 chr7A 85.638 376 30 10 1245 1606 461938201 461937836 1.650000e-99 374
16 TraesCS6A01G068300 chr7A 85.106 376 32 10 1245 1606 461943329 461942964 3.580000e-96 363
17 TraesCS6A01G068300 chr7A 77.019 322 55 14 4554 4865 671655066 671654754 3.010000e-37 167
18 TraesCS6A01G068300 chr7B 87.059 340 28 4 1281 1606 81406639 81406976 2.140000e-98 370
19 TraesCS6A01G068300 chr7B 84.737 190 21 7 1437 1620 27213834 27214021 2.990000e-42 183
20 TraesCS6A01G068300 chr5A 85.106 376 32 11 1245 1606 37146887 37146522 3.580000e-96 363
21 TraesCS6A01G068300 chr5A 80.723 332 48 10 4523 4843 570022119 570022445 1.350000e-60 244
22 TraesCS6A01G068300 chr2A 85.106 376 32 12 1245 1606 142697789 142698154 3.580000e-96 363
23 TraesCS6A01G068300 chr3A 84.840 376 33 11 1245 1606 589831618 589831983 1.670000e-94 357
24 TraesCS6A01G068300 chr5D 84.840 376 26 12 1245 1606 148236292 148235934 2.790000e-92 350
25 TraesCS6A01G068300 chr4D 78.161 522 54 27 990 1489 188963493 188963976 1.330000e-70 278
26 TraesCS6A01G068300 chr2D 87.156 218 23 4 1473 1685 579139090 579138873 4.870000e-60 243
27 TraesCS6A01G068300 chr2D 81.214 346 21 16 1157 1489 288162425 288162111 6.300000e-59 239
28 TraesCS6A01G068300 chr2D 78.754 353 65 7 4523 4868 382333330 382332981 1.360000e-55 228
29 TraesCS6A01G068300 chr2D 78.025 405 58 22 4337 4712 5202405 5202807 4.900000e-55 226
30 TraesCS6A01G068300 chr1D 79.814 322 51 9 4556 4868 182081925 182081609 6.340000e-54 222
31 TraesCS6A01G068300 chr4A 77.143 350 59 12 4528 4867 642232631 642232969 2.990000e-42 183
32 TraesCS6A01G068300 chr3B 88.591 149 13 4 1475 1620 754019560 754019413 1.390000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G068300 chr6A 36683239 36688107 4868 False 8992.000 8992 100.000000 1 4869 1 chr6A.!!$F1 4868
1 TraesCS6A01G068300 chr6D 32296506 32299985 3479 False 1319.000 2796 88.641000 592 3993 3 chr6D.!!$F2 3401
2 TraesCS6A01G068300 chr6B 67937069 67942156 5087 False 697.125 2486 88.703125 1 4866 8 chr6B.!!$F1 4865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 990 0.179078 ACGTACACCGCACCAAGAAA 60.179 50.0 0.00 0.00 41.42 2.52 F
1210 1449 0.036952 ACATGACAGTTCCAGCTCGG 60.037 55.0 0.00 0.00 0.00 4.63 F
1271 1543 0.105964 TGTTGTGTCGTCTTCAGGGG 59.894 55.0 0.00 0.00 0.00 4.79 F
1949 2314 0.108138 CCGTCTTTGCCCACTCCTAG 60.108 60.0 0.00 0.00 0.00 3.02 F
3586 4056 0.036765 TACTCCCGTTGTGCACATCC 60.037 55.0 22.39 13.42 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2350 0.853530 AGCCCAAGGTTGTCCTCTTT 59.146 50.0 0.0 0.0 44.35 2.52 R
2946 3411 0.868406 CCAAGTGAGTTTGGCGAGTC 59.132 55.0 0.0 0.0 41.02 3.36 R
3052 3521 1.087501 GATCGAAGGGTTCAACAGCC 58.912 55.0 0.0 0.0 44.40 4.85 R
3789 4272 0.320247 AGTCTCAGGCTTTCGCACTG 60.320 55.0 0.0 0.0 38.10 3.66 R
4597 5188 0.179124 GTCATGGCTGAGTCGAGGAC 60.179 60.0 0.0 0.0 30.18 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.097892 AGTTCAAAGTTTGCTGTAACCCTG 59.902 41.667 10.90 0.00 0.00 4.45
47 48 1.959085 CGCCACTGCCAATTGAACT 59.041 52.632 7.12 0.00 0.00 3.01
76 77 1.273606 GACAGTTGGTCTGAGCAGCTA 59.726 52.381 22.64 0.89 46.27 3.32
132 133 1.269309 CCCGTCTTCTTGCTCCTATCG 60.269 57.143 0.00 0.00 0.00 2.92
134 135 1.066303 CGTCTTCTTGCTCCTATCGCT 59.934 52.381 0.00 0.00 0.00 4.93
149 150 1.003839 CGCTGCCTAGGGTTTGTGA 60.004 57.895 11.72 0.00 32.59 3.58
155 156 1.755179 CCTAGGGTTTGTGAGGCATG 58.245 55.000 0.00 0.00 0.00 4.06
173 174 2.340210 TGCAATGTAGGTGTGTGTGT 57.660 45.000 0.00 0.00 0.00 3.72
177 178 2.942376 CAATGTAGGTGTGTGTGTGTGT 59.058 45.455 0.00 0.00 0.00 3.72
178 179 2.772077 TGTAGGTGTGTGTGTGTGTT 57.228 45.000 0.00 0.00 0.00 3.32
227 284 2.829458 GAGGAGGAGGACCGACCG 60.829 72.222 5.37 0.00 44.74 4.79
237 294 2.048877 ACCGACCGTAAAGCCGTG 60.049 61.111 0.00 0.00 0.00 4.94
254 311 1.197721 CGTGGACTTCTCAATTGCCAC 59.802 52.381 16.40 16.40 41.69 5.01
307 364 4.679373 ATCAGCCAGAGTAAATCACGAT 57.321 40.909 0.00 0.00 0.00 3.73
328 385 4.681074 TGTGTGTCCTACAATGAAGTGA 57.319 40.909 0.00 0.00 41.89 3.41
330 387 5.620206 TGTGTGTCCTACAATGAAGTGAAT 58.380 37.500 0.00 0.00 41.89 2.57
332 389 6.873605 TGTGTGTCCTACAATGAAGTGAATAG 59.126 38.462 0.00 0.00 41.89 1.73
337 394 6.884836 GTCCTACAATGAAGTGAATAGGGTTT 59.115 38.462 0.00 0.00 31.80 3.27
338 395 8.044908 GTCCTACAATGAAGTGAATAGGGTTTA 58.955 37.037 0.00 0.00 31.80 2.01
366 423 1.511305 TCGGGCATCGAAGTCTGAC 59.489 57.895 0.00 0.00 45.86 3.51
375 432 1.733399 GAAGTCTGACGTGGCGGTC 60.733 63.158 0.00 1.92 37.45 4.79
389 446 1.577922 CGGTCGTTCGAACTCCTCA 59.422 57.895 24.80 2.11 0.00 3.86
394 451 2.844804 GTCGTTCGAACTCCTCATAACG 59.155 50.000 24.80 9.49 41.24 3.18
397 454 3.668757 CGTTCGAACTCCTCATAACGTCA 60.669 47.826 24.80 0.00 37.87 4.35
419 476 2.540101 CTCGATTTAAGGCCAAGCTACG 59.460 50.000 5.01 4.14 0.00 3.51
426 629 6.613755 TTTAAGGCCAAGCTACGATATTTC 57.386 37.500 5.01 0.00 0.00 2.17
432 635 4.360563 CCAAGCTACGATATTTCAGACGT 58.639 43.478 0.00 0.00 41.66 4.34
433 636 4.441415 CCAAGCTACGATATTTCAGACGTC 59.559 45.833 7.70 7.70 39.59 4.34
437 640 4.261072 GCTACGATATTTCAGACGTCTGGA 60.261 45.833 37.82 31.33 43.91 3.86
438 641 4.030134 ACGATATTTCAGACGTCTGGAC 57.970 45.455 37.82 20.93 43.91 4.02
439 642 3.181489 ACGATATTTCAGACGTCTGGACC 60.181 47.826 37.82 20.61 43.91 4.46
440 643 2.933495 TATTTCAGACGTCTGGACCG 57.067 50.000 37.82 18.16 43.91 4.79
441 644 0.246635 ATTTCAGACGTCTGGACCGG 59.753 55.000 37.82 17.46 43.91 5.28
442 645 2.430382 TTTCAGACGTCTGGACCGGC 62.430 60.000 37.82 1.05 43.91 6.13
443 646 4.436998 CAGACGTCTGGACCGGCC 62.437 72.222 33.36 4.32 40.20 6.13
444 647 4.680537 AGACGTCTGGACCGGCCT 62.681 66.667 19.30 0.00 37.63 5.19
445 648 2.753043 GACGTCTGGACCGGCCTA 60.753 66.667 8.70 0.00 37.63 3.93
446 649 2.283388 ACGTCTGGACCGGCCTAA 60.283 61.111 14.76 2.06 37.63 2.69
447 650 2.183555 CGTCTGGACCGGCCTAAC 59.816 66.667 14.76 11.45 37.63 2.34
461 664 3.242413 CGGCCTAACTTGATTTGATGACG 60.242 47.826 0.00 0.00 0.00 4.35
462 665 3.487544 GGCCTAACTTGATTTGATGACGC 60.488 47.826 0.00 0.00 0.00 5.19
465 668 1.155889 ACTTGATTTGATGACGCGCA 58.844 45.000 5.73 5.73 0.00 6.09
476 679 1.813753 GACGCGCATTGAAGGCCTA 60.814 57.895 5.16 0.00 0.00 3.93
492 695 4.014406 AGGCCTAAAAATGTCTAAACCGG 58.986 43.478 1.29 0.00 0.00 5.28
628 832 1.203038 TCATTGAACCTGGCCATGTGT 60.203 47.619 14.95 5.64 0.00 3.72
632 836 0.679960 GAACCTGGCCATGTGTACCC 60.680 60.000 14.95 0.00 0.00 3.69
634 838 2.308722 CCTGGCCATGTGTACCCCT 61.309 63.158 5.51 0.00 0.00 4.79
636 840 2.270874 CTGGCCATGTGTACCCCTCC 62.271 65.000 5.51 0.00 0.00 4.30
640 844 0.976073 CCATGTGTACCCCTCCTCGT 60.976 60.000 0.00 0.00 0.00 4.18
672 876 2.072487 CCAGGTCCATCCCATCCGT 61.072 63.158 0.00 0.00 36.75 4.69
693 903 1.683943 GGTCCCCGCTAATAAAACCC 58.316 55.000 0.00 0.00 0.00 4.11
695 905 2.357465 GGTCCCCGCTAATAAAACCCTT 60.357 50.000 0.00 0.00 0.00 3.95
696 906 2.686405 GTCCCCGCTAATAAAACCCTTG 59.314 50.000 0.00 0.00 0.00 3.61
698 908 1.407618 CCCGCTAATAAAACCCTTGCC 59.592 52.381 0.00 0.00 0.00 4.52
699 909 2.096248 CCGCTAATAAAACCCTTGCCA 58.904 47.619 0.00 0.00 0.00 4.92
780 990 0.179078 ACGTACACCGCACCAAGAAA 60.179 50.000 0.00 0.00 41.42 2.52
893 1103 0.468400 AGCCCACGACTATCCTCTCC 60.468 60.000 0.00 0.00 0.00 3.71
894 1104 1.465200 GCCCACGACTATCCTCTCCC 61.465 65.000 0.00 0.00 0.00 4.30
895 1105 0.828343 CCCACGACTATCCTCTCCCC 60.828 65.000 0.00 0.00 0.00 4.81
896 1106 0.186386 CCACGACTATCCTCTCCCCT 59.814 60.000 0.00 0.00 0.00 4.79
897 1107 1.611519 CACGACTATCCTCTCCCCTC 58.388 60.000 0.00 0.00 0.00 4.30
898 1108 0.479378 ACGACTATCCTCTCCCCTCC 59.521 60.000 0.00 0.00 0.00 4.30
899 1109 0.774908 CGACTATCCTCTCCCCTCCT 59.225 60.000 0.00 0.00 0.00 3.69
900 1110 1.271707 CGACTATCCTCTCCCCTCCTC 60.272 61.905 0.00 0.00 0.00 3.71
901 1111 2.070573 GACTATCCTCTCCCCTCCTCT 58.929 57.143 0.00 0.00 0.00 3.69
902 1112 2.041216 GACTATCCTCTCCCCTCCTCTC 59.959 59.091 0.00 0.00 0.00 3.20
903 1113 2.358258 CTATCCTCTCCCCTCCTCTCT 58.642 57.143 0.00 0.00 0.00 3.10
904 1114 1.158007 ATCCTCTCCCCTCCTCTCTC 58.842 60.000 0.00 0.00 0.00 3.20
945 1155 4.097361 GCCACCGTCTTCTCCCCC 62.097 72.222 0.00 0.00 0.00 5.40
946 1156 2.284699 CCACCGTCTTCTCCCCCT 60.285 66.667 0.00 0.00 0.00 4.79
973 1183 2.110420 CCCGAAACCCCTATCCGC 59.890 66.667 0.00 0.00 0.00 5.54
995 1205 3.459063 CCGTCCCGGGGAGAAGAC 61.459 72.222 23.50 9.43 44.15 3.01
996 1206 3.459063 CGTCCCGGGGAGAAGACC 61.459 72.222 23.50 2.09 29.39 3.85
1051 1272 2.105649 GAGGAGAGTCAAATCCCCATCC 59.894 54.545 0.00 0.00 36.14 3.51
1058 1279 0.554792 CAAATCCCCATCCTGCTCCT 59.445 55.000 0.00 0.00 0.00 3.69
1100 1321 4.514577 CGCGGCATTCTCTCCGGT 62.515 66.667 0.00 0.00 45.37 5.28
1126 1347 1.452108 CTCCGGCCAGGTGATTTCC 60.452 63.158 2.24 0.00 41.99 3.13
1142 1363 4.043310 TGATTTCCTGAACTGAATCCACCT 59.957 41.667 0.00 0.00 0.00 4.00
1145 1376 2.838202 TCCTGAACTGAATCCACCTACC 59.162 50.000 0.00 0.00 0.00 3.18
1146 1377 2.092914 CCTGAACTGAATCCACCTACCC 60.093 54.545 0.00 0.00 0.00 3.69
1147 1378 1.913419 TGAACTGAATCCACCTACCCC 59.087 52.381 0.00 0.00 0.00 4.95
1149 1380 1.584724 ACTGAATCCACCTACCCCTG 58.415 55.000 0.00 0.00 0.00 4.45
1150 1381 0.181350 CTGAATCCACCTACCCCTGC 59.819 60.000 0.00 0.00 0.00 4.85
1151 1382 0.253160 TGAATCCACCTACCCCTGCT 60.253 55.000 0.00 0.00 0.00 4.24
1152 1383 0.919710 GAATCCACCTACCCCTGCTT 59.080 55.000 0.00 0.00 0.00 3.91
1153 1384 1.285078 GAATCCACCTACCCCTGCTTT 59.715 52.381 0.00 0.00 0.00 3.51
1154 1385 0.919710 ATCCACCTACCCCTGCTTTC 59.080 55.000 0.00 0.00 0.00 2.62
1156 1387 0.698818 CCACCTACCCCTGCTTTCTT 59.301 55.000 0.00 0.00 0.00 2.52
1157 1388 1.075536 CCACCTACCCCTGCTTTCTTT 59.924 52.381 0.00 0.00 0.00 2.52
1158 1389 2.490902 CCACCTACCCCTGCTTTCTTTT 60.491 50.000 0.00 0.00 0.00 2.27
1159 1390 3.230976 CACCTACCCCTGCTTTCTTTTT 58.769 45.455 0.00 0.00 0.00 1.94
1160 1391 3.005791 CACCTACCCCTGCTTTCTTTTTG 59.994 47.826 0.00 0.00 0.00 2.44
1180 1411 0.546122 GGGATTTTGATTTGGGGGCC 59.454 55.000 0.00 0.00 0.00 5.80
1181 1412 0.177836 GGATTTTGATTTGGGGGCCG 59.822 55.000 0.00 0.00 0.00 6.13
1182 1413 0.177836 GATTTTGATTTGGGGGCCGG 59.822 55.000 0.00 0.00 0.00 6.13
1183 1414 1.909459 ATTTTGATTTGGGGGCCGGC 61.909 55.000 21.18 21.18 0.00 6.13
1198 1437 1.018752 CCGGCGATGTTGACATGACA 61.019 55.000 9.30 0.00 36.57 3.58
1199 1438 0.371301 CGGCGATGTTGACATGACAG 59.629 55.000 0.00 0.00 36.57 3.51
1203 1442 2.159653 GCGATGTTGACATGACAGTTCC 60.160 50.000 0.00 0.00 36.57 3.62
1210 1449 0.036952 ACATGACAGTTCCAGCTCGG 60.037 55.000 0.00 0.00 0.00 4.63
1211 1450 0.742281 CATGACAGTTCCAGCTCGGG 60.742 60.000 0.00 0.00 34.36 5.14
1212 1451 1.903877 ATGACAGTTCCAGCTCGGGG 61.904 60.000 2.86 0.00 34.36 5.73
1213 1452 3.316573 GACAGTTCCAGCTCGGGGG 62.317 68.421 2.86 0.00 34.36 5.40
1214 1453 3.003173 CAGTTCCAGCTCGGGGGA 61.003 66.667 2.86 0.00 34.36 4.81
1215 1454 2.203938 AGTTCCAGCTCGGGGGAA 60.204 61.111 0.00 0.00 40.75 3.97
1218 1457 2.679342 TTCCAGCTCGGGGGAATGG 61.679 63.158 0.00 0.00 38.23 3.16
1219 1458 4.883354 CCAGCTCGGGGGAATGGC 62.883 72.222 0.00 0.00 0.00 4.40
1220 1459 3.801997 CAGCTCGGGGGAATGGCT 61.802 66.667 0.00 0.00 0.00 4.75
1265 1537 2.351726 GCTCAGTTTGTTGTGTCGTCTT 59.648 45.455 0.00 0.00 0.00 3.01
1270 1542 1.948104 TTGTTGTGTCGTCTTCAGGG 58.052 50.000 0.00 0.00 0.00 4.45
1271 1543 0.105964 TGTTGTGTCGTCTTCAGGGG 59.894 55.000 0.00 0.00 0.00 4.79
1306 1578 1.990424 CAGGATGGTGCTGTGGGTA 59.010 57.895 0.00 0.00 30.66 3.69
1420 1710 2.171003 GGTATGCTTGGTTTGGAAGCT 58.829 47.619 0.00 0.00 45.14 3.74
1435 1725 5.344743 TGGAAGCTAATCTGAACCTGTAG 57.655 43.478 0.00 0.00 0.00 2.74
1444 1734 6.852420 AATCTGAACCTGTAGCTGTACTTA 57.148 37.500 0.00 0.00 0.00 2.24
1462 1752 8.547967 TGTACTTATTGGTCTGAAGATTTCAC 57.452 34.615 0.00 0.00 35.46 3.18
1470 1760 5.702670 TGGTCTGAAGATTTCACATCTCAAC 59.297 40.000 0.00 0.00 35.46 3.18
1471 1761 5.936956 GGTCTGAAGATTTCACATCTCAACT 59.063 40.000 0.00 0.00 35.46 3.16
1577 1867 3.592381 GCCATATGCGTAAGTTGACTG 57.408 47.619 0.00 0.00 41.68 3.51
1578 1868 2.286418 GCCATATGCGTAAGTTGACTGC 60.286 50.000 0.00 0.00 41.68 4.40
1579 1869 2.935849 CCATATGCGTAAGTTGACTGCA 59.064 45.455 0.00 0.00 40.23 4.41
1580 1870 3.001634 CCATATGCGTAAGTTGACTGCAG 59.998 47.826 13.48 13.48 39.17 4.41
1588 1880 3.844577 AAGTTGACTGCAGCATGAATC 57.155 42.857 15.27 2.90 39.69 2.52
1589 1881 2.786777 AGTTGACTGCAGCATGAATCA 58.213 42.857 15.27 5.94 39.69 2.57
1594 1886 5.239359 TGACTGCAGCATGAATCAAATAC 57.761 39.130 15.27 0.00 39.69 1.89
1622 1914 4.210832 CACATGATGCTGCATTACTCTG 57.789 45.455 17.36 10.37 0.00 3.35
1623 1915 3.626217 CACATGATGCTGCATTACTCTGT 59.374 43.478 17.36 11.00 0.00 3.41
1624 1916 3.626217 ACATGATGCTGCATTACTCTGTG 59.374 43.478 17.36 9.66 0.00 3.66
1625 1917 2.635714 TGATGCTGCATTACTCTGTGG 58.364 47.619 17.36 0.00 0.00 4.17
1626 1918 1.945394 GATGCTGCATTACTCTGTGGG 59.055 52.381 17.36 0.00 0.00 4.61
1627 1919 0.677731 TGCTGCATTACTCTGTGGGC 60.678 55.000 0.00 0.00 0.00 5.36
1628 1920 0.677731 GCTGCATTACTCTGTGGGCA 60.678 55.000 0.00 0.00 0.00 5.36
1629 1921 1.089920 CTGCATTACTCTGTGGGCAC 58.910 55.000 0.00 0.00 0.00 5.01
1630 1922 0.692476 TGCATTACTCTGTGGGCACT 59.308 50.000 0.00 0.00 0.00 4.40
1631 1923 1.905894 TGCATTACTCTGTGGGCACTA 59.094 47.619 0.00 0.00 0.00 2.74
1632 1924 2.505407 TGCATTACTCTGTGGGCACTAT 59.495 45.455 0.00 0.00 0.00 2.12
1633 1925 3.709141 TGCATTACTCTGTGGGCACTATA 59.291 43.478 0.00 0.00 0.00 1.31
1634 1926 4.347876 TGCATTACTCTGTGGGCACTATAT 59.652 41.667 0.00 0.00 0.00 0.86
1635 1927 5.542251 TGCATTACTCTGTGGGCACTATATA 59.458 40.000 0.00 0.00 0.00 0.86
1636 1928 6.042666 TGCATTACTCTGTGGGCACTATATAA 59.957 38.462 0.00 0.00 0.00 0.98
1637 1929 7.106239 GCATTACTCTGTGGGCACTATATAAT 58.894 38.462 0.00 0.00 0.00 1.28
1638 1930 8.258007 GCATTACTCTGTGGGCACTATATAATA 58.742 37.037 0.00 0.00 0.00 0.98
1639 1931 9.587772 CATTACTCTGTGGGCACTATATAATAC 57.412 37.037 0.00 0.00 0.00 1.89
1640 1932 8.951614 TTACTCTGTGGGCACTATATAATACT 57.048 34.615 0.00 0.00 0.00 2.12
1641 1933 7.233389 ACTCTGTGGGCACTATATAATACTG 57.767 40.000 0.00 0.00 0.00 2.74
1648 1940 9.021807 GTGGGCACTATATAATACTGTTCTCTA 57.978 37.037 0.00 0.00 0.00 2.43
1667 1959 1.907807 GGAGTGTTGCCATGGCCAA 60.908 57.895 33.44 23.19 41.09 4.52
1672 1964 1.274728 GTGTTGCCATGGCCAACAATA 59.725 47.619 35.43 21.76 40.65 1.90
1702 1994 3.281727 TCTGAGACTTGTTGCACCTTT 57.718 42.857 0.00 0.00 0.00 3.11
1724 2017 1.271379 ACATGCTTGTGTGGCTTCATG 59.729 47.619 4.14 0.00 37.78 3.07
1727 2020 0.316204 GCTTGTGTGGCTTCATGCTT 59.684 50.000 0.00 0.00 42.39 3.91
1728 2021 1.933500 GCTTGTGTGGCTTCATGCTTG 60.934 52.381 0.00 0.00 42.39 4.01
1729 2022 1.338973 CTTGTGTGGCTTCATGCTTGT 59.661 47.619 0.00 0.00 42.39 3.16
1749 2114 1.816074 TTCGCAGGGCTTCGTTTATT 58.184 45.000 0.00 0.00 0.00 1.40
1768 2133 7.094634 CGTTTATTGCAGAGAAATATATGCCCT 60.095 37.037 0.00 0.00 37.89 5.19
1812 2177 7.556844 ACTTACAATACCTATCACACTTCCAG 58.443 38.462 0.00 0.00 0.00 3.86
1841 2206 4.177026 CGTGGTTTTGTTTGGATTGTTGA 58.823 39.130 0.00 0.00 0.00 3.18
1847 2212 7.175641 TGGTTTTGTTTGGATTGTTGACAAAAT 59.824 29.630 13.59 0.00 45.88 1.82
1879 2244 7.829211 CCTTATAAATTCTTTGGTCAGGACTCA 59.171 37.037 0.00 0.00 0.00 3.41
1932 2297 3.806625 ATTCTTGGCCATTTCAATCCG 57.193 42.857 6.09 0.00 0.00 4.18
1936 2301 2.214376 TGGCCATTTCAATCCGTCTT 57.786 45.000 0.00 0.00 0.00 3.01
1945 2310 0.804989 CAATCCGTCTTTGCCCACTC 59.195 55.000 0.00 0.00 0.00 3.51
1946 2311 0.322546 AATCCGTCTTTGCCCACTCC 60.323 55.000 0.00 0.00 0.00 3.85
1947 2312 1.201429 ATCCGTCTTTGCCCACTCCT 61.201 55.000 0.00 0.00 0.00 3.69
1948 2313 0.543410 TCCGTCTTTGCCCACTCCTA 60.543 55.000 0.00 0.00 0.00 2.94
1949 2314 0.108138 CCGTCTTTGCCCACTCCTAG 60.108 60.000 0.00 0.00 0.00 3.02
1951 2316 1.002087 CGTCTTTGCCCACTCCTAGTT 59.998 52.381 0.00 0.00 0.00 2.24
1959 2324 3.181434 TGCCCACTCCTAGTTCATTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
2030 2465 7.562454 TCAATCCAAATGCATCCTATCTTCTTT 59.438 33.333 0.00 0.00 0.00 2.52
2048 2483 9.909644 ATCTTCTTTCTCATTTGTTCTTCATTG 57.090 29.630 0.00 0.00 0.00 2.82
2055 2490 8.168790 TCTCATTTGTTCTTCATTGTCAATGA 57.831 30.769 21.80 21.80 45.68 2.57
2063 2498 7.383029 TGTTCTTCATTGTCAATGATTTTGCTC 59.617 33.333 25.19 13.91 46.50 4.26
2097 2533 6.044682 CCAAGCATGAAAACTTGATATTCCC 58.955 40.000 11.13 0.00 44.89 3.97
2098 2534 6.127253 CCAAGCATGAAAACTTGATATTCCCT 60.127 38.462 11.13 0.00 44.89 4.20
2111 2547 5.419542 TGATATTCCCTGAGTCTTGTTTCG 58.580 41.667 0.00 0.00 0.00 3.46
2216 2654 4.550577 TGTGCAAGTGTTTGTAGACATG 57.449 40.909 0.00 0.00 36.65 3.21
2226 2664 4.759693 TGTTTGTAGACATGCCCAAAGTAG 59.240 41.667 0.00 0.00 0.00 2.57
2377 2815 5.649782 AGCAGTTCTATTCACCAAAATGG 57.350 39.130 0.00 0.00 45.02 3.16
2379 2817 4.381932 GCAGTTCTATTCACCAAAATGGGG 60.382 45.833 0.87 0.00 44.11 4.96
2387 2825 4.898014 TCACCAAAATGGGGATATCCTT 57.102 40.909 21.18 5.32 46.95 3.36
2390 2828 5.660864 TCACCAAAATGGGGATATCCTTTTC 59.339 40.000 21.18 4.49 46.95 2.29
2391 2829 4.968719 ACCAAAATGGGGATATCCTTTTCC 59.031 41.667 21.18 13.90 43.37 3.13
2393 2831 5.428131 CCAAAATGGGGATATCCTTTTCCAA 59.572 40.000 21.18 5.73 34.40 3.53
2395 2833 7.401246 CAAAATGGGGATATCCTTTTCCAAAA 58.599 34.615 21.18 0.00 34.40 2.44
2396 2834 7.581424 AAATGGGGATATCCTTTTCCAAAAA 57.419 32.000 21.18 0.00 31.17 1.94
2504 2968 3.888583 TGAATGCCATGACATTGCTCTA 58.111 40.909 12.33 0.00 40.31 2.43
2523 2987 8.650143 TGCTCTATCTTTTGGTTTCCTTATTT 57.350 30.769 0.00 0.00 0.00 1.40
2609 3073 6.317893 GTGTCAAAGGTGGTCTAGAAAAAGAA 59.682 38.462 0.00 0.00 0.00 2.52
2655 3119 9.353999 AGTGATTTTATTTCTTGTTTATTCGCC 57.646 29.630 0.00 0.00 0.00 5.54
2658 3122 8.702163 ATTTTATTTCTTGTTTATTCGCCTGG 57.298 30.769 0.00 0.00 0.00 4.45
2794 3258 6.500684 AGGTATAAATGCAAGGCGAATATG 57.499 37.500 0.00 0.00 0.00 1.78
2843 3307 7.957002 TCTTCAGTACTCTCATTTTCTCTTGT 58.043 34.615 0.00 0.00 0.00 3.16
2850 3314 7.489574 ACTCTCATTTTCTCTTGTTGAACTC 57.510 36.000 0.00 0.00 0.00 3.01
2916 3380 6.199937 TGTATTAGTGTAAGGGTCGAACTC 57.800 41.667 0.00 0.00 0.00 3.01
2917 3381 5.948162 TGTATTAGTGTAAGGGTCGAACTCT 59.052 40.000 0.00 0.00 0.00 3.24
2925 3390 7.831193 AGTGTAAGGGTCGAACTCTACTATTAA 59.169 37.037 0.00 0.00 0.00 1.40
2959 3428 0.798776 CCATGTGACTCGCCAAACTC 59.201 55.000 0.00 0.00 0.00 3.01
2972 3441 2.863704 GCCAAACTCACTTGGTCAATGC 60.864 50.000 4.41 0.00 46.53 3.56
2998 3467 3.314307 TTCGTATCCACTCCTGATCCT 57.686 47.619 0.00 0.00 0.00 3.24
3052 3521 0.846015 TGGAGGATATGGCAAGGTGG 59.154 55.000 0.00 0.00 0.00 4.61
3078 3547 3.611766 TGAACCCTTCGATCCTCTTTC 57.388 47.619 0.00 0.00 0.00 2.62
3096 3565 6.036953 CCTCTTTCATGAATACTCTGCTTCAC 59.963 42.308 9.40 0.00 34.43 3.18
3112 3581 5.308014 TGCTTCACTAAGAGCATTTCTGAA 58.692 37.500 0.00 0.00 35.91 3.02
3162 3631 0.459063 GGCAAATTGCTACAGCCAGC 60.459 55.000 18.04 0.00 44.28 4.85
3250 3719 6.076981 AGGAATTGTTTCTCATGTTGTCAC 57.923 37.500 0.00 0.00 32.16 3.67
3253 3722 2.217750 TGTTTCTCATGTTGTCACCCG 58.782 47.619 0.00 0.00 0.00 5.28
3284 3753 5.183522 TGCACTCATGTTATTTGATCAAGCA 59.816 36.000 8.41 7.31 0.00 3.91
3302 3771 3.012518 AGCATGTAGGATGCACTTGTTC 58.987 45.455 9.20 0.00 46.77 3.18
3313 3782 2.079925 GCACTTGTTCCTCATCTGTCC 58.920 52.381 0.00 0.00 0.00 4.02
3322 3791 4.916041 TCCTCATCTGTCCATTCTGTTT 57.084 40.909 0.00 0.00 0.00 2.83
3332 3801 6.430925 TCTGTCCATTCTGTTTACATTCCAAG 59.569 38.462 0.00 0.00 0.00 3.61
3333 3802 5.476599 TGTCCATTCTGTTTACATTCCAAGG 59.523 40.000 0.00 0.00 0.00 3.61
3343 3812 1.238439 CATTCCAAGGCACGACAGTT 58.762 50.000 0.00 0.00 0.00 3.16
3372 3841 7.350744 TGTCAGTAGTAGTTTGTTCTGGTTA 57.649 36.000 0.00 0.00 0.00 2.85
3384 3853 4.168101 TGTTCTGGTTATCTGTCCTCCTT 58.832 43.478 0.00 0.00 0.00 3.36
3385 3854 4.020218 TGTTCTGGTTATCTGTCCTCCTTG 60.020 45.833 0.00 0.00 0.00 3.61
3386 3855 2.501723 TCTGGTTATCTGTCCTCCTTGC 59.498 50.000 0.00 0.00 0.00 4.01
3387 3856 2.237143 CTGGTTATCTGTCCTCCTTGCA 59.763 50.000 0.00 0.00 0.00 4.08
3388 3857 2.846206 TGGTTATCTGTCCTCCTTGCAT 59.154 45.455 0.00 0.00 0.00 3.96
3389 3858 4.037222 TGGTTATCTGTCCTCCTTGCATA 58.963 43.478 0.00 0.00 0.00 3.14
3390 3859 4.660303 TGGTTATCTGTCCTCCTTGCATAT 59.340 41.667 0.00 0.00 0.00 1.78
3391 3860 5.132648 TGGTTATCTGTCCTCCTTGCATATT 59.867 40.000 0.00 0.00 0.00 1.28
3415 3884 4.361451 CAGAACAAAACTGCACTTGAGT 57.639 40.909 5.64 0.00 0.00 3.41
3439 3909 9.872684 AGTCATATCATCAATCCCTTACAAATT 57.127 29.630 0.00 0.00 0.00 1.82
3474 3944 3.840831 TTCAGGCCATGAAGACGAG 57.159 52.632 5.01 0.00 43.09 4.18
3480 3950 1.471676 GGCCATGAAGACGAGTCGATT 60.472 52.381 21.50 13.33 34.09 3.34
3552 4022 1.520787 GGTTACCGGCTCCGACATG 60.521 63.158 10.28 0.00 42.83 3.21
3570 4040 5.560760 CGACATGCCATTAAAATCGCATACT 60.561 40.000 7.34 0.00 40.49 2.12
3573 4043 3.568007 TGCCATTAAAATCGCATACTCCC 59.432 43.478 0.00 0.00 27.45 4.30
3586 4056 0.036765 TACTCCCGTTGTGCACATCC 60.037 55.000 22.39 13.42 0.00 3.51
3625 4095 1.269166 CGTCGTGGTCTCAACATAGC 58.731 55.000 0.00 0.00 0.00 2.97
3635 4105 3.305629 GTCTCAACATAGCAAGAAGAGCG 59.694 47.826 0.00 0.00 37.01 5.03
3686 4156 1.048601 TTCCTCTGACCACACTCACC 58.951 55.000 0.00 0.00 0.00 4.02
3789 4272 0.742635 GCTGTAGCTTCCAGAGTGCC 60.743 60.000 15.19 0.00 38.21 5.01
3791 4274 0.610174 TGTAGCTTCCAGAGTGCCAG 59.390 55.000 0.00 0.00 0.00 4.85
3886 4377 3.058160 GCCGCTGAGGTGCAATGT 61.058 61.111 0.00 0.00 43.70 2.71
3890 4381 1.269726 CCGCTGAGGTGCAATGTTTTT 60.270 47.619 0.00 0.00 34.51 1.94
3891 4382 2.030363 CCGCTGAGGTGCAATGTTTTTA 60.030 45.455 0.00 0.00 34.51 1.52
3892 4383 2.979813 CGCTGAGGTGCAATGTTTTTAC 59.020 45.455 0.00 0.00 0.00 2.01
3893 4384 3.304659 CGCTGAGGTGCAATGTTTTTACT 60.305 43.478 0.00 0.00 0.00 2.24
3894 4385 4.620982 GCTGAGGTGCAATGTTTTTACTT 58.379 39.130 0.00 0.00 0.00 2.24
3895 4386 4.681483 GCTGAGGTGCAATGTTTTTACTTC 59.319 41.667 0.00 0.00 0.00 3.01
3896 4387 5.735922 GCTGAGGTGCAATGTTTTTACTTCA 60.736 40.000 0.00 0.00 0.00 3.02
3897 4388 5.587289 TGAGGTGCAATGTTTTTACTTCAC 58.413 37.500 0.00 0.00 0.00 3.18
3898 4389 5.126222 TGAGGTGCAATGTTTTTACTTCACA 59.874 36.000 0.00 0.00 0.00 3.58
3899 4390 6.160576 AGGTGCAATGTTTTTACTTCACAT 57.839 33.333 0.00 0.00 32.31 3.21
3900 4391 5.984926 AGGTGCAATGTTTTTACTTCACATG 59.015 36.000 0.00 0.00 31.37 3.21
3901 4392 5.982516 GGTGCAATGTTTTTACTTCACATGA 59.017 36.000 0.00 0.00 31.37 3.07
3902 4393 6.646240 GGTGCAATGTTTTTACTTCACATGAT 59.354 34.615 0.00 0.00 31.37 2.45
3903 4394 7.171337 GGTGCAATGTTTTTACTTCACATGATT 59.829 33.333 0.00 0.00 31.37 2.57
3904 4395 8.216453 GTGCAATGTTTTTACTTCACATGATTC 58.784 33.333 0.00 0.00 31.37 2.52
3905 4396 8.143193 TGCAATGTTTTTACTTCACATGATTCT 58.857 29.630 0.00 0.00 31.37 2.40
3906 4397 8.430063 GCAATGTTTTTACTTCACATGATTCTG 58.570 33.333 0.00 0.00 31.37 3.02
3907 4398 9.467258 CAATGTTTTTACTTCACATGATTCTGT 57.533 29.630 0.00 0.00 31.37 3.41
3911 4402 8.968242 GTTTTTACTTCACATGATTCTGTTTCC 58.032 33.333 0.00 0.00 0.00 3.13
3913 4404 9.567776 TTTTACTTCACATGATTCTGTTTCCTA 57.432 29.630 0.00 0.00 0.00 2.94
3934 4438 8.731275 TCCTAATTCGTTATGAATGTCATTGT 57.269 30.769 1.88 0.00 46.65 2.71
3989 4493 4.564041 CTCCTTCGATTCATATGACAGGG 58.436 47.826 4.48 2.90 0.00 4.45
4011 4523 4.101585 GGAAAATGGGGAAAATGGAGGATC 59.898 45.833 0.00 0.00 0.00 3.36
4013 4525 0.550914 TGGGGAAAATGGAGGATCGG 59.449 55.000 0.00 0.00 34.37 4.18
4039 4551 1.656818 CCGCGCACTTGAATCCCATT 61.657 55.000 8.75 0.00 0.00 3.16
4048 4560 5.657474 CACTTGAATCCCATTGATTTGGAG 58.343 41.667 0.00 0.00 43.81 3.86
4051 4563 6.323225 ACTTGAATCCCATTGATTTGGAGATC 59.677 38.462 0.00 0.00 43.81 2.75
4061 4573 8.358148 CCATTGATTTGGAGATCTTAGGAATTG 58.642 37.037 0.00 0.00 39.25 2.32
4087 4599 2.862541 AGTTAGTGTTTGATGGCAGCA 58.137 42.857 0.00 0.00 0.00 4.41
4101 4613 2.960384 TGGCAGCATTGGGAAATCATAG 59.040 45.455 0.00 0.00 0.00 2.23
4105 4617 5.012239 GCAGCATTGGGAAATCATAGGATA 58.988 41.667 0.00 0.00 32.09 2.59
4107 4619 6.183360 GCAGCATTGGGAAATCATAGGATATC 60.183 42.308 0.00 0.00 32.09 1.63
4108 4620 6.037940 CAGCATTGGGAAATCATAGGATATCG 59.962 42.308 0.00 0.00 32.09 2.92
4109 4621 5.220931 GCATTGGGAAATCATAGGATATCGC 60.221 44.000 0.00 0.00 32.09 4.58
4110 4622 5.497464 TTGGGAAATCATAGGATATCGCA 57.503 39.130 0.00 0.00 32.09 5.10
4111 4623 5.497464 TGGGAAATCATAGGATATCGCAA 57.503 39.130 0.00 0.00 32.09 4.85
4112 4624 5.491070 TGGGAAATCATAGGATATCGCAAG 58.509 41.667 0.00 0.00 32.09 4.01
4113 4625 4.878397 GGGAAATCATAGGATATCGCAAGG 59.122 45.833 0.00 0.00 32.09 3.61
4193 4706 6.705863 AGCTCCTAAGGATTGCATTTTTAG 57.294 37.500 0.00 0.00 0.00 1.85
4236 4749 5.195185 TGCATGATCTATGATGTGTTTGGT 58.805 37.500 0.00 0.00 39.21 3.67
4237 4750 5.653330 TGCATGATCTATGATGTGTTTGGTT 59.347 36.000 0.00 0.00 39.21 3.67
4238 4751 5.975344 GCATGATCTATGATGTGTTTGGTTG 59.025 40.000 0.00 0.00 39.21 3.77
4251 4764 1.255882 TTGGTTGCCTGCATTACCTG 58.744 50.000 12.77 0.00 30.39 4.00
4264 4777 2.684001 TTACCTGCAACCATACCGAG 57.316 50.000 0.00 0.00 0.00 4.63
4369 4945 0.537371 AGTGCGGTGAAAAAGGGAGG 60.537 55.000 0.00 0.00 0.00 4.30
4371 4947 0.766131 TGCGGTGAAAAAGGGAGGTA 59.234 50.000 0.00 0.00 0.00 3.08
4375 4951 0.803117 GTGAAAAAGGGAGGTAGCGC 59.197 55.000 0.00 0.00 0.00 5.92
4406 4982 1.273327 GTGCAAGGGGGAAATTGAGTG 59.727 52.381 0.00 0.00 0.00 3.51
4414 4990 1.468914 GGGAAATTGAGTGAAGACGGC 59.531 52.381 0.00 0.00 0.00 5.68
4429 5005 3.649986 GGCGGGCGATGGAAATCG 61.650 66.667 3.81 3.81 45.99 3.34
4430 5006 3.649986 GCGGGCGATGGAAATCGG 61.650 66.667 9.86 0.00 43.66 4.18
4453 5033 2.025156 GCTGGATGGCGCGAAATG 59.975 61.111 12.10 0.00 0.00 2.32
4458 5038 1.436195 GGATGGCGCGAAATGTAGCA 61.436 55.000 12.10 0.00 0.00 3.49
4463 5043 1.333258 GGCGCGAAATGTAGCATCTTC 60.333 52.381 12.10 0.00 0.00 2.87
4473 5053 2.171659 TGTAGCATCTTCGCCCCATTTA 59.828 45.455 0.00 0.00 0.00 1.40
4485 5076 1.211949 CCCCATTTACTCGGTCACCAT 59.788 52.381 0.00 0.00 0.00 3.55
4488 5079 4.127171 CCCATTTACTCGGTCACCATTAG 58.873 47.826 0.00 0.00 0.00 1.73
4490 5081 2.973694 TTACTCGGTCACCATTAGCC 57.026 50.000 0.00 0.00 0.00 3.93
4491 5082 2.154567 TACTCGGTCACCATTAGCCT 57.845 50.000 0.00 0.00 0.00 4.58
4497 5088 2.483188 CGGTCACCATTAGCCTTAGGAC 60.483 54.545 0.69 0.00 0.00 3.85
4515 5106 0.318762 ACGAGCACTTCCTCTGTTCC 59.681 55.000 0.00 0.00 0.00 3.62
4516 5107 0.605589 CGAGCACTTCCTCTGTTCCT 59.394 55.000 0.00 0.00 0.00 3.36
4517 5108 1.819288 CGAGCACTTCCTCTGTTCCTA 59.181 52.381 0.00 0.00 0.00 2.94
4518 5109 2.159310 CGAGCACTTCCTCTGTTCCTAG 60.159 54.545 0.00 0.00 0.00 3.02
4519 5110 1.552792 AGCACTTCCTCTGTTCCTAGC 59.447 52.381 0.00 0.00 0.00 3.42
4520 5111 1.737363 GCACTTCCTCTGTTCCTAGCG 60.737 57.143 0.00 0.00 0.00 4.26
4521 5112 1.546476 CACTTCCTCTGTTCCTAGCGT 59.454 52.381 0.00 0.00 0.00 5.07
4523 5114 3.192844 CACTTCCTCTGTTCCTAGCGTAA 59.807 47.826 0.00 0.00 0.00 3.18
4524 5115 3.444388 ACTTCCTCTGTTCCTAGCGTAAG 59.556 47.826 0.00 0.00 43.44 2.34
4594 5185 1.077212 CCTCTTGGCCACCATCTGG 60.077 63.158 3.88 0.00 44.08 3.86
4620 5211 2.362369 CGACTCAGCCATGACCCCT 61.362 63.158 0.00 0.00 0.00 4.79
4627 5218 2.677228 CCATGACCCCTTCGCCTT 59.323 61.111 0.00 0.00 0.00 4.35
4633 5224 2.742372 CCCCTTCGCCTTGTCGTG 60.742 66.667 0.00 0.00 0.00 4.35
4656 5247 3.960237 CGAAGCCGGTAAGCAACA 58.040 55.556 1.90 0.00 34.23 3.33
4657 5248 2.466867 CGAAGCCGGTAAGCAACAT 58.533 52.632 1.90 0.00 34.23 2.71
4658 5249 0.096976 CGAAGCCGGTAAGCAACATG 59.903 55.000 1.90 0.00 34.23 3.21
4659 5250 0.451783 GAAGCCGGTAAGCAACATGG 59.548 55.000 1.90 0.00 34.23 3.66
4660 5251 0.037590 AAGCCGGTAAGCAACATGGA 59.962 50.000 1.90 0.00 34.23 3.41
4661 5252 0.037590 AGCCGGTAAGCAACATGGAA 59.962 50.000 1.90 0.00 34.23 3.53
4662 5253 0.170339 GCCGGTAAGCAACATGGAAC 59.830 55.000 1.90 0.00 0.00 3.62
4663 5254 4.782814 AGCCGGTAAGCAACATGGAACA 62.783 50.000 1.90 0.00 37.96 3.18
4695 5286 3.868619 TGTTAGGTTGGTTGTTAGGCT 57.131 42.857 0.00 0.00 0.00 4.58
4714 5305 3.610911 GCTGTTAGGCAAGGTGTAGAAT 58.389 45.455 0.00 0.00 0.00 2.40
4723 5315 2.755103 CAAGGTGTAGAATTGGCTTCCC 59.245 50.000 0.00 0.00 34.11 3.97
4728 5320 4.532834 GTGTAGAATTGGCTTCCCCATTA 58.467 43.478 0.00 0.00 44.89 1.90
4735 5327 0.623723 GGCTTCCCCATTACTCACCA 59.376 55.000 0.00 0.00 0.00 4.17
4739 5331 0.988832 TCCCCATTACTCACCACACC 59.011 55.000 0.00 0.00 0.00 4.16
4750 5342 1.447838 ACCACACCATCGATGTCGC 60.448 57.895 23.27 0.00 39.60 5.19
4754 5346 0.821517 ACACCATCGATGTCGCCTAA 59.178 50.000 23.27 0.00 39.60 2.69
4765 5363 0.179258 GTCGCCTAAAACGAACGCAG 60.179 55.000 0.00 0.00 41.93 5.18
4773 5371 0.531974 AAACGAACGCAGGAAGCTGA 60.532 50.000 0.00 0.00 42.61 4.26
4793 5391 3.706086 TGATAGTTCAGGCAGCATCACTA 59.294 43.478 0.00 0.00 0.00 2.74
4815 5413 7.283127 CACTAATAGTTGTGATTTAGGCATGGT 59.717 37.037 0.00 0.00 36.38 3.55
4846 5444 4.963318 TCCACAAGAGAGTTGTTCATCT 57.037 40.909 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.430236 GCAAACAGGGTTACAGCAAACTT 60.430 43.478 0.00 0.00 0.00 2.66
17 18 1.149627 AGTGGCGCAAACAGGGTTA 59.850 52.632 10.83 0.00 0.00 2.85
24 25 1.300853 AATTGGCAGTGGCGCAAAC 60.301 52.632 10.83 7.11 42.47 2.93
47 48 0.736053 GACCAACTGTCCGCACAAAA 59.264 50.000 0.00 0.00 38.09 2.44
76 77 1.152483 ATGGTGGTTGCTTGGCAGT 60.152 52.632 0.00 0.00 40.61 4.40
81 82 1.580942 CCGACATGGTGGTTGCTTG 59.419 57.895 0.00 0.00 0.00 4.01
132 133 0.678048 CCTCACAAACCCTAGGCAGC 60.678 60.000 2.05 0.00 0.00 5.25
149 150 1.272092 ACACACCTACATTGCATGCCT 60.272 47.619 16.68 0.00 0.00 4.75
155 156 1.946768 ACACACACACACCTACATTGC 59.053 47.619 0.00 0.00 0.00 3.56
161 162 3.055747 TCTCAAACACACACACACACCTA 60.056 43.478 0.00 0.00 0.00 3.08
169 170 3.031013 TCCTCTCTCTCAAACACACACA 58.969 45.455 0.00 0.00 0.00 3.72
173 174 3.068732 CACACTCCTCTCTCTCAAACACA 59.931 47.826 0.00 0.00 0.00 3.72
177 178 2.630098 CCACACACTCCTCTCTCTCAAA 59.370 50.000 0.00 0.00 0.00 2.69
178 179 2.158460 TCCACACACTCCTCTCTCTCAA 60.158 50.000 0.00 0.00 0.00 3.02
227 284 2.450609 TGAGAAGTCCACGGCTTTAC 57.549 50.000 0.00 0.00 0.00 2.01
237 294 0.169009 GCGTGGCAATTGAGAAGTCC 59.831 55.000 10.34 0.00 0.00 3.85
286 343 4.141846 ACATCGTGATTTACTCTGGCTGAT 60.142 41.667 0.00 0.00 0.00 2.90
307 364 4.681074 TCACTTCATTGTAGGACACACA 57.319 40.909 0.00 0.00 36.69 3.72
321 378 5.251932 TGACCCATAAACCCTATTCACTTCA 59.748 40.000 0.00 0.00 0.00 3.02
328 385 4.384868 CCGAACTGACCCATAAACCCTATT 60.385 45.833 0.00 0.00 0.00 1.73
330 387 2.502538 CCGAACTGACCCATAAACCCTA 59.497 50.000 0.00 0.00 0.00 3.53
332 389 1.680860 CCCGAACTGACCCATAAACCC 60.681 57.143 0.00 0.00 0.00 4.11
337 394 0.468226 GATGCCCGAACTGACCCATA 59.532 55.000 0.00 0.00 0.00 2.74
338 395 1.224592 GATGCCCGAACTGACCCAT 59.775 57.895 0.00 0.00 0.00 4.00
358 415 2.338984 GACCGCCACGTCAGACTT 59.661 61.111 0.00 0.00 32.74 3.01
363 420 4.986587 CGAACGACCGCCACGTCA 62.987 66.667 0.00 0.00 43.16 4.35
366 423 3.759828 GTTCGAACGACCGCCACG 61.760 66.667 13.36 0.00 0.00 4.94
375 432 2.844804 GACGTTATGAGGAGTTCGAACG 59.155 50.000 21.87 9.83 45.68 3.95
389 446 4.117685 GGCCTTAAATCGAGTGACGTTAT 58.882 43.478 0.00 0.00 43.13 1.89
394 451 2.096013 GCTTGGCCTTAAATCGAGTGAC 59.904 50.000 3.32 0.00 0.00 3.67
397 454 2.789409 AGCTTGGCCTTAAATCGAGT 57.211 45.000 3.32 0.00 0.00 4.18
419 476 3.372954 CGGTCCAGACGTCTGAAATATC 58.627 50.000 40.21 23.19 46.59 1.63
426 629 4.436998 GGCCGGTCCAGACGTCTG 62.437 72.222 33.87 33.87 43.40 3.51
432 635 0.543410 TCAAGTTAGGCCGGTCCAGA 60.543 55.000 15.92 2.28 37.29 3.86
433 636 0.541863 ATCAAGTTAGGCCGGTCCAG 59.458 55.000 15.92 0.00 37.29 3.86
437 640 2.871096 TCAAATCAAGTTAGGCCGGT 57.129 45.000 1.90 0.00 0.00 5.28
438 641 3.065371 GTCATCAAATCAAGTTAGGCCGG 59.935 47.826 0.00 0.00 0.00 6.13
439 642 3.242413 CGTCATCAAATCAAGTTAGGCCG 60.242 47.826 0.00 0.00 0.00 6.13
440 643 3.487544 GCGTCATCAAATCAAGTTAGGCC 60.488 47.826 0.00 0.00 0.00 5.19
441 644 3.685058 GCGTCATCAAATCAAGTTAGGC 58.315 45.455 0.00 0.00 0.00 3.93
442 645 3.785505 GCGCGTCATCAAATCAAGTTAGG 60.786 47.826 8.43 0.00 0.00 2.69
443 646 3.181521 TGCGCGTCATCAAATCAAGTTAG 60.182 43.478 8.43 0.00 0.00 2.34
444 647 2.739379 TGCGCGTCATCAAATCAAGTTA 59.261 40.909 8.43 0.00 0.00 2.24
445 648 1.535028 TGCGCGTCATCAAATCAAGTT 59.465 42.857 8.43 0.00 0.00 2.66
446 649 1.155889 TGCGCGTCATCAAATCAAGT 58.844 45.000 8.43 0.00 0.00 3.16
447 650 2.463553 ATGCGCGTCATCAAATCAAG 57.536 45.000 8.43 0.00 0.00 3.02
461 664 2.362169 TTTTTAGGCCTTCAATGCGC 57.638 45.000 12.58 0.00 0.00 6.09
462 665 3.848726 ACATTTTTAGGCCTTCAATGCG 58.151 40.909 22.28 7.38 0.00 4.73
465 668 7.576856 CGGTTTAGACATTTTTAGGCCTTCAAT 60.577 37.037 12.58 4.03 0.00 2.57
476 679 2.506444 TCCGCCGGTTTAGACATTTTT 58.494 42.857 1.63 0.00 0.00 1.94
525 728 2.357952 GCTTCCGCAAATACCCCTAAAG 59.642 50.000 0.00 0.00 35.78 1.85
623 827 0.686769 GGACGAGGAGGGGTACACAT 60.687 60.000 0.00 0.00 0.00 3.21
628 832 0.935942 TAATGGGACGAGGAGGGGTA 59.064 55.000 0.00 0.00 0.00 3.69
632 836 0.468648 GGGTTAATGGGACGAGGAGG 59.531 60.000 0.00 0.00 0.00 4.30
634 838 0.615544 ACGGGTTAATGGGACGAGGA 60.616 55.000 0.00 0.00 0.00 3.71
636 840 0.179092 GGACGGGTTAATGGGACGAG 60.179 60.000 0.00 0.00 0.00 4.18
640 844 0.548197 ACCTGGACGGGTTAATGGGA 60.548 55.000 0.00 0.00 35.89 4.37
861 1071 0.034863 GTGGGCTCGTTTGGGGATTA 60.035 55.000 0.00 0.00 0.00 1.75
893 1103 3.150767 CACTTATACCGAGAGAGGAGGG 58.849 54.545 0.00 0.00 34.73 4.30
894 1104 2.554893 GCACTTATACCGAGAGAGGAGG 59.445 54.545 0.00 0.00 34.73 4.30
895 1105 3.482436 AGCACTTATACCGAGAGAGGAG 58.518 50.000 0.00 0.00 34.73 3.69
896 1106 3.478509 GAGCACTTATACCGAGAGAGGA 58.521 50.000 0.00 0.00 34.73 3.71
897 1107 2.554893 GGAGCACTTATACCGAGAGAGG 59.445 54.545 0.00 0.00 37.30 3.69
898 1108 2.554893 GGGAGCACTTATACCGAGAGAG 59.445 54.545 0.00 0.00 0.00 3.20
899 1109 2.584236 GGGAGCACTTATACCGAGAGA 58.416 52.381 0.00 0.00 0.00 3.10
900 1110 1.614413 GGGGAGCACTTATACCGAGAG 59.386 57.143 0.00 0.00 0.00 3.20
901 1111 1.700955 GGGGAGCACTTATACCGAGA 58.299 55.000 0.00 0.00 0.00 4.04
902 1112 0.680061 GGGGGAGCACTTATACCGAG 59.320 60.000 0.00 0.00 0.00 4.63
903 1113 0.031917 TGGGGGAGCACTTATACCGA 60.032 55.000 0.00 0.00 0.00 4.69
904 1114 0.106149 GTGGGGGAGCACTTATACCG 59.894 60.000 0.00 0.00 0.00 4.02
945 1155 1.511768 GTTTCGGGTCGGAGAGGAG 59.488 63.158 0.00 0.00 36.95 3.69
946 1156 1.980772 GGTTTCGGGTCGGAGAGGA 60.981 63.158 0.00 0.00 36.95 3.71
998 1208 4.507916 TCTCCTCTCCTCCGCCGG 62.508 72.222 0.00 0.00 0.00 6.13
999 1209 3.213402 GTCTCCTCTCCTCCGCCG 61.213 72.222 0.00 0.00 0.00 6.46
1000 1210 3.213402 CGTCTCCTCTCCTCCGCC 61.213 72.222 0.00 0.00 0.00 6.13
1001 1211 3.894947 GCGTCTCCTCTCCTCCGC 61.895 72.222 0.00 0.00 0.00 5.54
1002 1212 3.578272 CGCGTCTCCTCTCCTCCG 61.578 72.222 0.00 0.00 0.00 4.63
1126 1347 2.092914 GGGGTAGGTGGATTCAGTTCAG 60.093 54.545 0.00 0.00 0.00 3.02
1142 1363 2.604139 CCCAAAAAGAAAGCAGGGGTA 58.396 47.619 0.00 0.00 32.59 3.69
1145 1376 1.715785 TCCCCAAAAAGAAAGCAGGG 58.284 50.000 0.00 0.00 36.04 4.45
1146 1377 4.356405 AAATCCCCAAAAAGAAAGCAGG 57.644 40.909 0.00 0.00 0.00 4.85
1147 1378 5.367302 TCAAAATCCCCAAAAAGAAAGCAG 58.633 37.500 0.00 0.00 0.00 4.24
1149 1380 6.882610 AATCAAAATCCCCAAAAAGAAAGC 57.117 33.333 0.00 0.00 0.00 3.51
1150 1381 7.255555 CCCAAATCAAAATCCCCAAAAAGAAAG 60.256 37.037 0.00 0.00 0.00 2.62
1151 1382 6.548993 CCCAAATCAAAATCCCCAAAAAGAAA 59.451 34.615 0.00 0.00 0.00 2.52
1152 1383 6.067350 CCCAAATCAAAATCCCCAAAAAGAA 58.933 36.000 0.00 0.00 0.00 2.52
1153 1384 5.457342 CCCCAAATCAAAATCCCCAAAAAGA 60.457 40.000 0.00 0.00 0.00 2.52
1154 1385 4.766373 CCCCAAATCAAAATCCCCAAAAAG 59.234 41.667 0.00 0.00 0.00 2.27
1156 1387 3.075134 CCCCCAAATCAAAATCCCCAAAA 59.925 43.478 0.00 0.00 0.00 2.44
1157 1388 2.646798 CCCCCAAATCAAAATCCCCAAA 59.353 45.455 0.00 0.00 0.00 3.28
1158 1389 2.273619 CCCCCAAATCAAAATCCCCAA 58.726 47.619 0.00 0.00 0.00 4.12
1159 1390 1.963985 CCCCCAAATCAAAATCCCCA 58.036 50.000 0.00 0.00 0.00 4.96
1160 1391 0.546122 GCCCCCAAATCAAAATCCCC 59.454 55.000 0.00 0.00 0.00 4.81
1180 1411 0.371301 CTGTCATGTCAACATCGCCG 59.629 55.000 0.00 0.00 33.61 6.46
1181 1412 1.442769 ACTGTCATGTCAACATCGCC 58.557 50.000 0.00 0.00 33.61 5.54
1182 1413 2.159653 GGAACTGTCATGTCAACATCGC 60.160 50.000 0.00 0.00 33.61 4.58
1183 1414 3.066380 TGGAACTGTCATGTCAACATCG 58.934 45.455 0.00 0.00 33.61 3.84
1198 1437 1.616628 ATTCCCCCGAGCTGGAACT 60.617 57.895 5.44 0.00 43.11 3.01
1199 1438 1.452108 CATTCCCCCGAGCTGGAAC 60.452 63.158 5.44 0.00 43.11 3.62
1203 1442 3.350031 AAGCCATTCCCCCGAGCTG 62.350 63.158 0.00 0.00 33.18 4.24
1210 1449 3.369787 CCAAATCAAAGAAGCCATTCCCC 60.370 47.826 0.00 0.00 35.94 4.81
1211 1450 3.865446 CCAAATCAAAGAAGCCATTCCC 58.135 45.455 0.00 0.00 35.94 3.97
1212 1451 3.264947 GCCAAATCAAAGAAGCCATTCC 58.735 45.455 0.00 0.00 35.94 3.01
1213 1452 2.925563 CGCCAAATCAAAGAAGCCATTC 59.074 45.455 0.00 0.00 35.52 2.67
1214 1453 2.299867 ACGCCAAATCAAAGAAGCCATT 59.700 40.909 0.00 0.00 0.00 3.16
1215 1454 1.895131 ACGCCAAATCAAAGAAGCCAT 59.105 42.857 0.00 0.00 0.00 4.40
1218 1457 2.704725 TCACGCCAAATCAAAGAAGC 57.295 45.000 0.00 0.00 0.00 3.86
1219 1458 3.428045 GGGATCACGCCAAATCAAAGAAG 60.428 47.826 0.00 0.00 0.00 2.85
1220 1459 2.491693 GGGATCACGCCAAATCAAAGAA 59.508 45.455 0.00 0.00 0.00 2.52
1420 1710 6.852420 AAGTACAGCTACAGGTTCAGATTA 57.148 37.500 0.00 0.00 0.00 1.75
1435 1725 7.334421 TGAAATCTTCAGACCAATAAGTACAGC 59.666 37.037 0.00 0.00 34.08 4.40
1444 1734 6.479006 TGAGATGTGAAATCTTCAGACCAAT 58.521 36.000 0.00 0.00 41.01 3.16
1462 1752 5.390356 GCGGAGAAAGAAAAGAGTTGAGATG 60.390 44.000 0.00 0.00 0.00 2.90
1470 1760 2.421619 AGCTGCGGAGAAAGAAAAGAG 58.578 47.619 8.65 0.00 0.00 2.85
1471 1761 2.549754 CAAGCTGCGGAGAAAGAAAAGA 59.450 45.455 8.65 0.00 0.00 2.52
1573 1863 4.337555 AGGTATTTGATTCATGCTGCAGTC 59.662 41.667 16.64 8.39 0.00 3.51
1574 1864 4.275810 AGGTATTTGATTCATGCTGCAGT 58.724 39.130 16.64 0.00 0.00 4.40
1575 1865 4.913335 AGGTATTTGATTCATGCTGCAG 57.087 40.909 10.11 10.11 0.00 4.41
1576 1866 5.192176 TGTAGGTATTTGATTCATGCTGCA 58.808 37.500 4.13 4.13 0.00 4.41
1577 1867 5.755813 CTGTAGGTATTTGATTCATGCTGC 58.244 41.667 0.00 0.00 0.00 5.25
1578 1868 5.297527 TGCTGTAGGTATTTGATTCATGCTG 59.702 40.000 0.00 0.00 0.00 4.41
1579 1869 5.297776 GTGCTGTAGGTATTTGATTCATGCT 59.702 40.000 0.00 0.00 0.00 3.79
1580 1870 5.066375 TGTGCTGTAGGTATTTGATTCATGC 59.934 40.000 0.00 0.00 0.00 4.06
1620 1912 7.671302 AGAACAGTATTATATAGTGCCCACAG 58.329 38.462 0.82 0.00 0.00 3.66
1621 1913 7.509318 AGAGAACAGTATTATATAGTGCCCACA 59.491 37.037 0.82 0.00 0.00 4.17
1622 1914 7.897864 AGAGAACAGTATTATATAGTGCCCAC 58.102 38.462 0.00 0.00 0.00 4.61
1623 1915 9.244292 CTAGAGAACAGTATTATATAGTGCCCA 57.756 37.037 0.00 0.00 0.00 5.36
1624 1916 8.688151 CCTAGAGAACAGTATTATATAGTGCCC 58.312 40.741 0.00 0.00 0.00 5.36
1625 1917 9.463902 TCCTAGAGAACAGTATTATATAGTGCC 57.536 37.037 0.00 0.00 0.00 5.01
1632 1924 8.630917 GCAACACTCCTAGAGAACAGTATTATA 58.369 37.037 0.00 0.00 33.32 0.98
1633 1925 7.418025 GGCAACACTCCTAGAGAACAGTATTAT 60.418 40.741 0.00 0.00 33.32 1.28
1634 1926 6.127423 GGCAACACTCCTAGAGAACAGTATTA 60.127 42.308 0.00 0.00 33.32 0.98
1635 1927 5.337652 GGCAACACTCCTAGAGAACAGTATT 60.338 44.000 0.00 0.00 33.32 1.89
1636 1928 4.160626 GGCAACACTCCTAGAGAACAGTAT 59.839 45.833 0.00 0.00 33.32 2.12
1637 1929 3.510360 GGCAACACTCCTAGAGAACAGTA 59.490 47.826 0.00 0.00 33.32 2.74
1638 1930 2.300437 GGCAACACTCCTAGAGAACAGT 59.700 50.000 0.00 0.00 33.32 3.55
1639 1931 2.300152 TGGCAACACTCCTAGAGAACAG 59.700 50.000 0.00 0.00 46.17 3.16
1640 1932 2.325484 TGGCAACACTCCTAGAGAACA 58.675 47.619 0.00 0.00 46.17 3.18
1667 1959 4.081420 AGTCTCAGAAATGTCGCCTATTGT 60.081 41.667 0.00 0.00 0.00 2.71
1672 1964 2.037772 ACAAGTCTCAGAAATGTCGCCT 59.962 45.455 0.00 0.00 0.00 5.52
1675 1967 3.248363 TGCAACAAGTCTCAGAAATGTCG 59.752 43.478 0.00 0.00 0.00 4.35
1702 1994 2.580962 TGAAGCCACACAAGCATGTTA 58.419 42.857 0.00 0.00 37.82 2.41
1724 2017 1.081175 GAAGCCCTGCGAAACAAGC 60.081 57.895 0.00 0.00 0.00 4.01
1727 2020 1.098712 AAACGAAGCCCTGCGAAACA 61.099 50.000 2.08 0.00 0.00 2.83
1728 2021 0.869730 TAAACGAAGCCCTGCGAAAC 59.130 50.000 2.08 0.00 0.00 2.78
1729 2022 1.816074 ATAAACGAAGCCCTGCGAAA 58.184 45.000 2.08 0.00 0.00 3.46
1749 2114 4.279169 GCAAAGGGCATATATTTCTCTGCA 59.721 41.667 0.00 0.00 43.97 4.41
1785 2150 9.038072 TGGAAGTGTGATAGGTATTGTAAGTAA 57.962 33.333 0.00 0.00 0.00 2.24
1786 2151 8.598202 TGGAAGTGTGATAGGTATTGTAAGTA 57.402 34.615 0.00 0.00 0.00 2.24
1787 2152 7.490657 TGGAAGTGTGATAGGTATTGTAAGT 57.509 36.000 0.00 0.00 0.00 2.24
1812 2177 7.435784 ACAATCCAAACAAAACCACGTTATAAC 59.564 33.333 5.47 5.47 0.00 1.89
1850 2215 9.457436 GTCCTGACCAAAGAATTTATAAGGTAA 57.543 33.333 0.00 0.00 35.03 2.85
1859 2224 5.310409 TCTGAGTCCTGACCAAAGAATTT 57.690 39.130 0.00 0.00 40.26 1.82
1915 2280 2.094675 AGACGGATTGAAATGGCCAAG 58.905 47.619 10.96 0.00 0.00 3.61
1924 2289 1.202879 AGTGGGCAAAGACGGATTGAA 60.203 47.619 1.87 0.00 0.00 2.69
1932 2297 2.038557 TGAACTAGGAGTGGGCAAAGAC 59.961 50.000 0.00 0.00 0.00 3.01
1936 2301 3.181434 ACAAATGAACTAGGAGTGGGCAA 60.181 43.478 0.00 0.00 0.00 4.52
1945 2310 6.981722 AGGTTAGCAAAACAAATGAACTAGG 58.018 36.000 0.00 0.00 0.00 3.02
1946 2311 7.382218 CCAAGGTTAGCAAAACAAATGAACTAG 59.618 37.037 4.59 0.00 0.00 2.57
1947 2312 7.206687 CCAAGGTTAGCAAAACAAATGAACTA 58.793 34.615 4.59 0.00 0.00 2.24
1948 2313 6.048509 CCAAGGTTAGCAAAACAAATGAACT 58.951 36.000 4.59 0.00 0.00 3.01
1949 2314 5.277297 GCCAAGGTTAGCAAAACAAATGAAC 60.277 40.000 4.59 0.00 0.00 3.18
1951 2316 4.376146 GCCAAGGTTAGCAAAACAAATGA 58.624 39.130 4.59 0.00 0.00 2.57
1959 2324 2.968574 TGATTTGGCCAAGGTTAGCAAA 59.031 40.909 19.48 0.00 0.00 3.68
1983 2348 1.911057 CCCAAGGTTGTCCTCTTTCC 58.089 55.000 0.00 0.00 44.35 3.13
1985 2350 0.853530 AGCCCAAGGTTGTCCTCTTT 59.146 50.000 0.00 0.00 44.35 2.52
1990 2355 1.177401 GATTGAGCCCAAGGTTGTCC 58.823 55.000 0.00 0.00 35.48 4.02
1991 2356 1.177401 GGATTGAGCCCAAGGTTGTC 58.823 55.000 0.00 0.00 35.48 3.18
2030 2465 8.168790 TCATTGACAATGAAGAACAAATGAGA 57.831 30.769 25.14 0.99 44.47 3.27
2046 2481 6.647481 CAGAAATGGAGCAAAATCATTGACAA 59.353 34.615 0.00 0.00 32.24 3.18
2048 2483 6.161381 ACAGAAATGGAGCAAAATCATTGAC 58.839 36.000 0.00 0.00 32.24 3.18
2055 2490 4.562143 GCTTGGACAGAAATGGAGCAAAAT 60.562 41.667 0.00 0.00 0.00 1.82
2063 2498 4.524316 TTTCATGCTTGGACAGAAATGG 57.476 40.909 0.00 0.00 0.00 3.16
2097 2533 5.715070 AGGATAAGACGAAACAAGACTCAG 58.285 41.667 0.00 0.00 0.00 3.35
2098 2534 5.336531 GGAGGATAAGACGAAACAAGACTCA 60.337 44.000 0.00 0.00 0.00 3.41
2111 2547 5.354513 GGTAAGTTTGCAAGGAGGATAAGAC 59.645 44.000 0.00 0.00 0.00 3.01
2159 2597 9.995003 TTTAAACATTCAGCATTAAAGTGGATT 57.005 25.926 0.00 0.00 0.00 3.01
2216 2654 2.436417 TGCAGTGAATCTACTTTGGGC 58.564 47.619 0.00 0.00 0.00 5.36
2226 2664 8.272176 CGAATAGAACTTCTAATGCAGTGAATC 58.728 37.037 0.00 0.00 31.96 2.52
2477 2941 4.092383 GCAATGTCATGGCATTCAAGAAAC 59.908 41.667 22.42 3.37 37.00 2.78
2504 2968 8.981659 CCCATAGAAATAAGGAAACCAAAAGAT 58.018 33.333 0.00 0.00 0.00 2.40
2523 2987 9.953565 GTAAATGTAAATACCATAGCCCATAGA 57.046 33.333 0.00 0.00 0.00 1.98
2609 3073 1.580845 GCACCTGCATTGCTTCTCGT 61.581 55.000 10.49 0.00 41.59 4.18
2655 3119 7.866393 GCATGATAAATCCAATCTTTCTTCCAG 59.134 37.037 0.00 0.00 0.00 3.86
2696 3160 9.173021 CCAAGTACTGTGGAAATTCATACATTA 57.827 33.333 15.18 0.00 38.54 1.90
2697 3161 7.888021 TCCAAGTACTGTGGAAATTCATACATT 59.112 33.333 18.66 0.00 42.29 2.71
2705 3169 5.825593 TCTCTCCAAGTACTGTGGAAATT 57.174 39.130 20.31 0.00 44.55 1.82
2814 3278 9.838339 AGAGAAAATGAGAGTACTGAAGAAAAA 57.162 29.630 0.00 0.00 0.00 1.94
2836 3300 4.487714 AACAGTGGAGTTCAACAAGAGA 57.512 40.909 0.00 0.00 0.00 3.10
2843 3307 4.349636 TCCATCCTAAACAGTGGAGTTCAA 59.650 41.667 0.00 0.00 35.91 2.69
2850 3314 6.094603 CAGAGAATTTCCATCCTAAACAGTGG 59.905 42.308 0.00 0.00 0.00 4.00
2946 3411 0.868406 CCAAGTGAGTTTGGCGAGTC 59.132 55.000 0.00 0.00 41.02 3.36
2947 3412 3.006672 CCAAGTGAGTTTGGCGAGT 57.993 52.632 0.00 0.00 41.02 4.18
2959 3428 3.374745 GAAACTGTGCATTGACCAAGTG 58.625 45.455 0.00 0.00 0.00 3.16
2972 3441 3.056821 TCAGGAGTGGATACGAAACTGTG 60.057 47.826 0.00 0.00 42.51 3.66
2998 3467 4.759693 CCAAGATAGTACTTGTTGCCAACA 59.240 41.667 6.08 6.08 43.72 3.33
3010 3479 1.811941 GCAGCAGGGCCAAGATAGTAC 60.812 57.143 6.18 0.00 0.00 2.73
3052 3521 1.087501 GATCGAAGGGTTCAACAGCC 58.912 55.000 0.00 0.00 44.40 4.85
3078 3547 6.200665 GCTCTTAGTGAAGCAGAGTATTCATG 59.799 42.308 0.00 0.00 37.72 3.07
3096 3565 7.121759 TGGAAAGGAATTCAGAAATGCTCTTAG 59.878 37.037 7.93 0.00 39.98 2.18
3112 3581 8.017418 TGTAAACAAGACAATTGGAAAGGAAT 57.983 30.769 10.83 0.00 0.00 3.01
3162 3631 5.228945 CCCTATTATATCCATTAGGGCCG 57.771 47.826 0.00 0.00 43.26 6.13
3250 3719 2.632377 ACATGAGTGCAAATAGACGGG 58.368 47.619 0.00 0.00 0.00 5.28
3253 3722 9.443283 GATCAAATAACATGAGTGCAAATAGAC 57.557 33.333 0.00 0.00 0.00 2.59
3284 3753 3.264193 TGAGGAACAAGTGCATCCTACAT 59.736 43.478 5.78 0.00 43.55 2.29
3302 3771 5.491070 TGTAAACAGAATGGACAGATGAGG 58.509 41.667 0.00 0.00 43.62 3.86
3313 3782 5.163513 GTGCCTTGGAATGTAAACAGAATG 58.836 41.667 0.00 0.00 46.00 2.67
3322 3791 1.346395 ACTGTCGTGCCTTGGAATGTA 59.654 47.619 0.00 0.00 0.00 2.29
3332 3801 2.206750 TGACAACTAAACTGTCGTGCC 58.793 47.619 0.00 0.00 45.10 5.01
3333 3802 2.864343 ACTGACAACTAAACTGTCGTGC 59.136 45.455 0.00 0.00 45.10 5.34
3343 3812 7.924412 CCAGAACAAACTACTACTGACAACTAA 59.076 37.037 0.00 0.00 0.00 2.24
3372 3841 4.349048 TGCTAATATGCAAGGAGGACAGAT 59.651 41.667 0.00 0.00 40.29 2.90
3411 3880 7.616528 TGTAAGGGATTGATGATATGACTCA 57.383 36.000 0.00 0.00 0.00 3.41
3415 3884 9.645128 ACAATTTGTAAGGGATTGATGATATGA 57.355 29.630 0.00 0.00 35.36 2.15
3439 3909 3.758023 CCTGAACAAATCCACATAGCACA 59.242 43.478 0.00 0.00 0.00 4.57
3474 3944 1.663643 TCCGCAAGCACAATAATCGAC 59.336 47.619 0.00 0.00 0.00 4.20
3480 3950 1.065491 ACCTCATCCGCAAGCACAATA 60.065 47.619 0.00 0.00 0.00 1.90
3552 4022 3.364964 CGGGAGTATGCGATTTTAATGGC 60.365 47.826 2.92 2.92 40.09 4.40
3570 4040 2.033448 GGGATGTGCACAACGGGA 59.967 61.111 25.72 0.00 0.00 5.14
3573 4043 1.915614 GAGCAGGGATGTGCACAACG 61.916 60.000 25.72 9.80 46.60 4.10
3586 4056 2.296365 TGCCCTCAGGAAGAGCAGG 61.296 63.158 0.00 0.00 43.31 4.85
3609 4079 2.959516 TCTTGCTATGTTGAGACCACG 58.040 47.619 0.00 0.00 0.00 4.94
3611 4081 4.825422 CTCTTCTTGCTATGTTGAGACCA 58.175 43.478 0.00 0.00 0.00 4.02
3615 4085 2.606725 CCGCTCTTCTTGCTATGTTGAG 59.393 50.000 0.00 0.00 0.00 3.02
3625 4095 3.793144 GCCGTGCCGCTCTTCTTG 61.793 66.667 0.00 0.00 0.00 3.02
3649 4119 2.480244 GGAAAATGCCATCTCTTTCGCC 60.480 50.000 0.00 0.00 0.00 5.54
3686 4156 5.012239 TCTTTCAATGGGAGAATGTCAAGG 58.988 41.667 0.00 0.00 0.00 3.61
3789 4272 0.320247 AGTCTCAGGCTTTCGCACTG 60.320 55.000 0.00 0.00 38.10 3.66
3791 4274 0.514691 CAAGTCTCAGGCTTTCGCAC 59.485 55.000 0.00 0.00 38.10 5.34
3811 4294 4.892934 TCACAAGGGAAGCAATAACACTTT 59.107 37.500 0.00 0.00 0.00 2.66
3881 4372 9.467258 ACAGAATCATGTGAAGTAAAAACATTG 57.533 29.630 0.00 0.00 32.27 2.82
3886 4377 8.912988 AGGAAACAGAATCATGTGAAGTAAAAA 58.087 29.630 0.00 0.00 32.52 1.94
3890 4381 9.739276 AATTAGGAAACAGAATCATGTGAAGTA 57.261 29.630 0.00 0.00 32.52 2.24
3891 4382 8.641498 AATTAGGAAACAGAATCATGTGAAGT 57.359 30.769 0.00 0.00 32.52 3.01
3892 4383 7.907045 CGAATTAGGAAACAGAATCATGTGAAG 59.093 37.037 0.00 0.00 32.52 3.02
3893 4384 7.390440 ACGAATTAGGAAACAGAATCATGTGAA 59.610 33.333 0.00 0.00 32.52 3.18
3894 4385 6.878923 ACGAATTAGGAAACAGAATCATGTGA 59.121 34.615 0.00 0.00 32.52 3.58
3895 4386 7.076842 ACGAATTAGGAAACAGAATCATGTG 57.923 36.000 0.00 0.00 32.52 3.21
3896 4387 7.687941 AACGAATTAGGAAACAGAATCATGT 57.312 32.000 0.00 0.00 33.96 3.21
3897 4388 9.655769 CATAACGAATTAGGAAACAGAATCATG 57.344 33.333 0.00 0.00 0.00 3.07
3898 4389 9.613428 TCATAACGAATTAGGAAACAGAATCAT 57.387 29.630 0.00 0.00 28.40 2.45
3899 4390 9.443323 TTCATAACGAATTAGGAAACAGAATCA 57.557 29.630 0.00 0.00 37.96 2.57
3902 4393 9.226606 ACATTCATAACGAATTAGGAAACAGAA 57.773 29.630 0.00 0.00 42.57 3.02
3903 4394 8.786826 ACATTCATAACGAATTAGGAAACAGA 57.213 30.769 0.00 0.00 42.57 3.41
3904 4395 8.664798 TGACATTCATAACGAATTAGGAAACAG 58.335 33.333 0.00 0.00 42.57 3.16
3905 4396 8.554835 TGACATTCATAACGAATTAGGAAACA 57.445 30.769 0.00 0.00 42.57 2.83
3911 4402 9.855361 GAGACAATGACATTCATAACGAATTAG 57.145 33.333 0.00 0.00 41.83 1.73
3913 4404 8.498054 AGAGACAATGACATTCATAACGAATT 57.502 30.769 0.00 0.00 41.83 2.17
3934 4438 6.337671 GCCATTCGGTTGCTCAAAAAGAGA 62.338 45.833 0.00 0.00 39.85 3.10
3989 4493 4.202151 CGATCCTCCATTTTCCCCATTTTC 60.202 45.833 0.00 0.00 0.00 2.29
4013 4525 1.017177 TTCAAGTGCGCGGGACATAC 61.017 55.000 8.83 0.00 0.00 2.39
4023 4535 3.788333 AATCAATGGGATTCAAGTGCG 57.212 42.857 0.00 0.00 42.62 5.34
4039 4551 5.829924 GCCAATTCCTAAGATCTCCAAATCA 59.170 40.000 0.00 0.00 0.00 2.57
4048 4560 5.904362 AACTTGTGCCAATTCCTAAGATC 57.096 39.130 0.00 0.00 0.00 2.75
4051 4563 5.473504 ACACTAACTTGTGCCAATTCCTAAG 59.526 40.000 0.00 0.00 41.30 2.18
4061 4573 3.857010 GCCATCAAACACTAACTTGTGCC 60.857 47.826 0.00 0.00 41.30 5.01
4087 4599 6.065976 TGCGATATCCTATGATTTCCCAAT 57.934 37.500 0.00 0.00 32.18 3.16
4101 4613 1.048601 TCTGACCCCTTGCGATATCC 58.951 55.000 0.00 0.00 0.00 2.59
4105 4617 1.613630 AGGTCTGACCCCTTGCGAT 60.614 57.895 22.81 0.00 39.75 4.58
4107 4619 1.903877 ATGAGGTCTGACCCCTTGCG 61.904 60.000 22.81 0.00 39.75 4.85
4108 4620 0.393537 CATGAGGTCTGACCCCTTGC 60.394 60.000 22.81 8.46 39.75 4.01
4109 4621 1.279496 TCATGAGGTCTGACCCCTTG 58.721 55.000 22.81 18.66 39.75 3.61
4110 4622 2.044793 TTCATGAGGTCTGACCCCTT 57.955 50.000 22.81 7.08 39.75 3.95
4111 4623 2.044793 TTTCATGAGGTCTGACCCCT 57.955 50.000 22.81 5.71 39.75 4.79
4112 4624 2.879103 TTTTCATGAGGTCTGACCCC 57.121 50.000 22.81 12.58 39.75 4.95
4193 4706 4.426313 GTGCTGGTACCAGGGCCC 62.426 72.222 36.91 23.28 43.77 5.80
4251 4764 1.654023 GCCCAACTCGGTATGGTTGC 61.654 60.000 0.00 0.00 40.75 4.17
4281 4794 4.568760 CCTGTTTGCAACCAAATACGTTTT 59.431 37.500 0.00 0.00 42.44 2.43
4282 4795 4.116238 CCTGTTTGCAACCAAATACGTTT 58.884 39.130 0.00 0.00 42.44 3.60
4283 4796 3.491792 CCCTGTTTGCAACCAAATACGTT 60.492 43.478 0.00 0.00 42.44 3.99
4284 4797 2.035321 CCCTGTTTGCAACCAAATACGT 59.965 45.455 0.00 0.00 42.44 3.57
4285 4798 2.294791 TCCCTGTTTGCAACCAAATACG 59.705 45.455 0.00 0.00 42.44 3.06
4286 4799 3.306019 CCTCCCTGTTTGCAACCAAATAC 60.306 47.826 0.00 0.00 42.44 1.89
4375 4951 3.545481 CTTGCACCGTAGCGAGCG 61.545 66.667 0.00 0.00 39.04 5.03
4426 5002 2.194056 CATCCAGCCTTGGCCGAT 59.806 61.111 8.17 6.98 44.63 4.18
4433 5009 3.918253 TTTCGCGCCATCCAGCCTT 62.918 57.895 0.00 0.00 0.00 4.35
4453 5033 1.680338 AAATGGGGCGAAGATGCTAC 58.320 50.000 0.00 0.00 34.52 3.58
4458 5038 1.202651 CCGAGTAAATGGGGCGAAGAT 60.203 52.381 0.00 0.00 0.00 2.40
4463 5043 1.087771 GTGACCGAGTAAATGGGGCG 61.088 60.000 0.00 0.00 37.72 6.13
4473 5053 1.276622 AAGGCTAATGGTGACCGAGT 58.723 50.000 0.00 0.00 0.00 4.18
4485 5076 1.848652 AGTGCTCGTCCTAAGGCTAA 58.151 50.000 0.00 0.00 0.00 3.09
4488 5079 0.460459 GGAAGTGCTCGTCCTAAGGC 60.460 60.000 12.72 0.00 38.78 4.35
4497 5088 0.605589 AGGAACAGAGGAAGTGCTCG 59.394 55.000 0.00 0.00 0.00 5.03
4515 5106 1.299468 CCGCCTCTGCTTACGCTAG 60.299 63.158 0.00 0.00 36.97 3.42
4516 5107 2.805546 CCGCCTCTGCTTACGCTA 59.194 61.111 0.00 0.00 36.97 4.26
4517 5108 4.821589 GCCGCCTCTGCTTACGCT 62.822 66.667 0.00 0.00 36.97 5.07
4519 5110 4.492160 TCGCCGCCTCTGCTTACG 62.492 66.667 0.00 0.00 34.43 3.18
4520 5111 2.886124 GTCGCCGCCTCTGCTTAC 60.886 66.667 0.00 0.00 34.43 2.34
4521 5112 3.356639 CTGTCGCCGCCTCTGCTTA 62.357 63.158 0.00 0.00 34.43 3.09
4531 5122 3.978723 CTGGAGAGTGCTGTCGCCG 62.979 68.421 4.65 0.00 39.17 6.46
4532 5123 2.125753 CTGGAGAGTGCTGTCGCC 60.126 66.667 2.38 2.38 36.96 5.54
4533 5124 2.813042 GCTGGAGAGTGCTGTCGC 60.813 66.667 0.00 0.00 0.00 5.19
4534 5125 1.445754 CTGCTGGAGAGTGCTGTCG 60.446 63.158 0.00 0.00 0.00 4.35
4535 5126 1.741032 GCTGCTGGAGAGTGCTGTC 60.741 63.158 0.00 0.00 0.00 3.51
4536 5127 2.346739 GCTGCTGGAGAGTGCTGT 59.653 61.111 0.00 0.00 0.00 4.40
4537 5128 1.742140 CTGCTGCTGGAGAGTGCTG 60.742 63.158 6.23 0.00 33.10 4.41
4538 5129 2.663796 CTGCTGCTGGAGAGTGCT 59.336 61.111 6.23 0.00 33.10 4.40
4539 5130 3.126225 GCTGCTGCTGGAGAGTGC 61.126 66.667 16.29 0.00 33.10 4.40
4540 5131 1.299562 CTTGCTGCTGCTGGAGAGTG 61.300 60.000 16.29 0.90 40.48 3.51
4541 5132 1.003597 CTTGCTGCTGCTGGAGAGT 60.004 57.895 16.29 0.00 40.48 3.24
4542 5133 0.741574 CTCTTGCTGCTGCTGGAGAG 60.742 60.000 22.96 21.67 39.14 3.20
4543 5134 1.295746 CTCTTGCTGCTGCTGGAGA 59.704 57.895 22.96 18.12 39.14 3.71
4544 5135 2.400158 GCTCTTGCTGCTGCTGGAG 61.400 63.158 23.01 23.01 40.48 3.86
4545 5136 2.359602 GCTCTTGCTGCTGCTGGA 60.360 61.111 17.00 12.69 40.48 3.86
4597 5188 0.179124 GTCATGGCTGAGTCGAGGAC 60.179 60.000 0.00 0.00 30.18 3.85
4620 5211 1.006571 GAGACCACGACAAGGCGAA 60.007 57.895 0.66 0.00 34.83 4.70
4627 5218 2.649034 GCTTCGGAGACCACGACA 59.351 61.111 0.00 0.00 40.45 4.35
4658 5249 4.141688 CCTAACATAGAAGGGAGGTGTTCC 60.142 50.000 0.00 0.00 46.00 3.62
4659 5250 4.470304 ACCTAACATAGAAGGGAGGTGTTC 59.530 45.833 0.00 0.00 35.97 3.18
4660 5251 4.436079 ACCTAACATAGAAGGGAGGTGTT 58.564 43.478 0.00 0.00 35.97 3.32
4661 5252 4.076175 ACCTAACATAGAAGGGAGGTGT 57.924 45.455 0.00 0.00 35.97 4.16
4662 5253 4.384208 CCAACCTAACATAGAAGGGAGGTG 60.384 50.000 0.00 0.00 37.38 4.00
4663 5254 3.780850 CCAACCTAACATAGAAGGGAGGT 59.219 47.826 0.00 0.00 38.98 3.85
4695 5286 4.331968 CCAATTCTACACCTTGCCTAACA 58.668 43.478 0.00 0.00 0.00 2.41
4714 5305 1.005450 GGTGAGTAATGGGGAAGCCAA 59.995 52.381 0.00 0.00 0.00 4.52
4723 5315 2.093711 TCGATGGTGTGGTGAGTAATGG 60.094 50.000 0.00 0.00 0.00 3.16
4728 5320 0.976641 ACATCGATGGTGTGGTGAGT 59.023 50.000 28.09 1.12 0.00 3.41
4735 5327 0.821517 TTAGGCGACATCGATGGTGT 59.178 50.000 28.09 10.26 43.02 4.16
4739 5331 2.190161 TCGTTTTAGGCGACATCGATG 58.810 47.619 23.68 23.68 43.02 3.84
4750 5342 1.136057 GCTTCCTGCGTTCGTTTTAGG 60.136 52.381 0.00 0.00 0.00 2.69
4773 5371 4.760530 TTAGTGATGCTGCCTGAACTAT 57.239 40.909 0.00 0.00 0.00 2.12
4793 5391 6.663093 TGAACCATGCCTAAATCACAACTATT 59.337 34.615 0.00 0.00 0.00 1.73
4807 5405 1.341383 GGATCAAGGTGAACCATGCCT 60.341 52.381 1.62 0.00 38.95 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.