Multiple sequence alignment - TraesCS6A01G067800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G067800 chr6A 100.000 5480 0 0 1 5480 36254374 36248895 0.000000e+00 10120
1 TraesCS6A01G067800 chr6A 82.801 1942 275 44 1492 3417 36108985 36107087 0.000000e+00 1681
2 TraesCS6A01G067800 chr6B 95.004 3563 144 14 1767 5324 67410980 67407447 0.000000e+00 5563
3 TraesCS6A01G067800 chr6B 88.505 2949 235 60 545 3430 66992875 66989968 0.000000e+00 3472
4 TraesCS6A01G067800 chr6B 90.797 2271 153 28 649 2899 68748054 68750288 0.000000e+00 2985
5 TraesCS6A01G067800 chr6B 90.151 2315 167 34 649 2940 68784094 68781818 0.000000e+00 2955
6 TraesCS6A01G067800 chr6B 92.388 1918 110 22 2930 4837 68781015 68779124 0.000000e+00 2700
7 TraesCS6A01G067800 chr6B 92.452 1815 103 20 2958 4761 68750711 68752502 0.000000e+00 2562
8 TraesCS6A01G067800 chr6B 88.048 2075 174 43 545 2562 67259771 67257714 0.000000e+00 2390
9 TraesCS6A01G067800 chr6B 83.239 1945 274 39 1495 3426 67131087 67129182 0.000000e+00 1738
10 TraesCS6A01G067800 chr6B 89.459 1404 93 20 330 1709 67412351 67410979 0.000000e+00 1722
11 TraesCS6A01G067800 chr6B 82.169 1918 281 43 1492 3394 66971100 66969229 0.000000e+00 1591
12 TraesCS6A01G067800 chr6B 88.604 1211 123 9 3431 4637 66989906 66988707 0.000000e+00 1458
13 TraesCS6A01G067800 chr6B 85.242 1301 130 33 4104 5393 67204872 67203623 0.000000e+00 1282
14 TraesCS6A01G067800 chr6B 79.261 1596 281 34 3447 5027 67129103 67127543 0.000000e+00 1068
15 TraesCS6A01G067800 chr6B 88.282 879 79 14 2559 3430 67229130 67228269 0.000000e+00 1031
16 TraesCS6A01G067800 chr6B 89.660 735 55 7 4747 5480 68753221 68753935 0.000000e+00 917
17 TraesCS6A01G067800 chr6B 87.370 673 72 5 3431 4102 67228207 67227547 0.000000e+00 760
18 TraesCS6A01G067800 chr6B 90.724 442 18 8 4828 5268 68800321 68800740 7.970000e-158 568
19 TraesCS6A01G067800 chr6B 86.595 373 29 4 305 659 68745642 68746011 5.150000e-105 392
20 TraesCS6A01G067800 chr6B 86.595 373 29 4 305 659 68786950 68786581 5.150000e-105 392
21 TraesCS6A01G067800 chr6B 77.413 549 81 31 759 1291 67324706 67324185 2.500000e-73 287
22 TraesCS6A01G067800 chr6B 95.808 167 7 0 5314 5480 67405907 67405741 2.520000e-68 270
23 TraesCS6A01G067800 chr6B 89.756 205 20 1 5260 5464 68805902 68806105 1.510000e-65 261
24 TraesCS6A01G067800 chr6B 92.517 147 7 3 95 240 67418074 67417931 2.000000e-49 207
25 TraesCS6A01G067800 chr6B 81.068 206 21 10 624 815 67261618 67261417 1.230000e-31 148
26 TraesCS6A01G067800 chr6B 82.209 163 17 7 313 475 67325261 67325111 4.450000e-26 130
27 TraesCS6A01G067800 chr6B 83.721 129 17 3 347 475 67133104 67132980 9.640000e-23 119
28 TraesCS6A01G067800 chr6D 89.401 4359 335 61 309 4608 31771743 31767453 0.000000e+00 5373
29 TraesCS6A01G067800 chr6D 89.182 4363 341 64 309 4608 23441626 23437332 0.000000e+00 5321
30 TraesCS6A01G067800 chr6D 84.135 1954 263 40 1495 3431 31754447 31752524 0.000000e+00 1847
31 TraesCS6A01G067800 chr6D 79.042 1670 294 40 3454 5110 31752444 31750818 0.000000e+00 1094
32 TraesCS6A01G067800 chr6D 89.502 743 65 9 4615 5350 23436091 23435355 0.000000e+00 928
33 TraesCS6A01G067800 chr6D 88.667 750 63 10 4615 5350 31766212 31765471 0.000000e+00 894
34 TraesCS6A01G067800 chr6D 79.107 560 71 30 757 1294 31755512 31754977 1.460000e-90 344
35 TraesCS6A01G067800 chr6D 94.521 73 3 1 1 72 23441877 23441805 1.610000e-20 111
36 TraesCS6A01G067800 chr6D 94.521 73 3 1 1 72 31772000 31771928 1.610000e-20 111
37 TraesCS6A01G067800 chr2B 82.532 1872 264 43 1544 3390 696670312 696672145 0.000000e+00 1587
38 TraesCS6A01G067800 chrUn 81.132 1219 179 43 1497 2697 323668650 323669835 0.000000e+00 929
39 TraesCS6A01G067800 chrUn 92.574 404 30 0 3602 4005 478299026 478299429 1.020000e-161 580
40 TraesCS6A01G067800 chr2A 77.630 675 125 16 3454 4118 717139340 717139998 2.390000e-103 387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G067800 chr6A 36248895 36254374 5479 True 10120.000000 10120 100.000000 1 5480 1 chr6A.!!$R2 5479
1 TraesCS6A01G067800 chr6A 36107087 36108985 1898 True 1681.000000 1681 82.801000 1492 3417 1 chr6A.!!$R1 1925
2 TraesCS6A01G067800 chr6B 67405741 67412351 6610 True 2518.333333 5563 93.423667 330 5480 3 chr6B.!!$R9 5150
3 TraesCS6A01G067800 chr6B 66988707 66992875 4168 True 2465.000000 3472 88.554500 545 4637 2 chr6B.!!$R4 4092
4 TraesCS6A01G067800 chr6B 68779124 68786950 7826 True 2015.666667 2955 89.711333 305 4837 3 chr6B.!!$R10 4532
5 TraesCS6A01G067800 chr6B 68745642 68753935 8293 False 1714.000000 2985 89.876000 305 5480 4 chr6B.!!$F3 5175
6 TraesCS6A01G067800 chr6B 66969229 66971100 1871 True 1591.000000 1591 82.169000 1492 3394 1 chr6B.!!$R1 1902
7 TraesCS6A01G067800 chr6B 67203623 67204872 1249 True 1282.000000 1282 85.242000 4104 5393 1 chr6B.!!$R2 1289
8 TraesCS6A01G067800 chr6B 67257714 67261618 3904 True 1269.000000 2390 84.558000 545 2562 2 chr6B.!!$R7 2017
9 TraesCS6A01G067800 chr6B 67127543 67133104 5561 True 975.000000 1738 82.073667 347 5027 3 chr6B.!!$R5 4680
10 TraesCS6A01G067800 chr6B 67227547 67229130 1583 True 895.500000 1031 87.826000 2559 4102 2 chr6B.!!$R6 1543
11 TraesCS6A01G067800 chr6B 67324185 67325261 1076 True 208.500000 287 79.811000 313 1291 2 chr6B.!!$R8 978
12 TraesCS6A01G067800 chr6D 31765471 31772000 6529 True 2126.000000 5373 90.863000 1 5350 3 chr6D.!!$R3 5349
13 TraesCS6A01G067800 chr6D 23435355 23441877 6522 True 2120.000000 5321 91.068333 1 5350 3 chr6D.!!$R1 5349
14 TraesCS6A01G067800 chr6D 31750818 31755512 4694 True 1095.000000 1847 80.761333 757 5110 3 chr6D.!!$R2 4353
15 TraesCS6A01G067800 chr2B 696670312 696672145 1833 False 1587.000000 1587 82.532000 1544 3390 1 chr2B.!!$F1 1846
16 TraesCS6A01G067800 chrUn 323668650 323669835 1185 False 929.000000 929 81.132000 1497 2697 1 chrUn.!!$F1 1200
17 TraesCS6A01G067800 chr2A 717139340 717139998 658 False 387.000000 387 77.630000 3454 4118 1 chr2A.!!$F1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 175 0.097674 CTTTTCATTGCCCGCTCGAG 59.902 55.000 8.45 8.45 0.00 4.04 F
687 5250 0.108377 TCAAGCATGACGTACCGCAT 60.108 50.000 0.00 0.00 0.00 4.73 F
809 5402 1.146263 GCAACCACTCCTATCCCCG 59.854 63.158 0.00 0.00 0.00 5.73 F
850 5443 1.311859 TGCCGGCAATTCATCTCATC 58.688 50.000 30.74 0.00 0.00 2.92 F
2346 7457 1.604604 TGGCACTTGCAGAGTTTACC 58.395 50.000 3.15 3.40 44.36 2.85 F
3815 9918 0.836606 TCTTCTGACAGTGGGCAACA 59.163 50.000 1.59 0.00 39.74 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1055 5728 0.322187 ATTTCCAGCCACCGGTGTAC 60.322 55.000 31.80 23.17 35.65 2.90 R
1590 6681 1.364626 TAAGCCTCGTCGACTCGTCC 61.365 60.000 14.70 0.00 0.00 4.79 R
2753 7880 0.317160 TCCTCTTGTGTCGCGACAAT 59.683 50.000 40.60 0.00 43.77 2.71 R
2761 7888 1.349357 AGGGAAAGCTCCTCTTGTGTC 59.651 52.381 0.00 0.00 42.05 3.67 R
3908 10011 0.253044 TGCATACAAGTGGAGCTCCC 59.747 55.000 29.95 20.23 34.29 4.30 R
5408 15075 0.548031 TGGCTCCCATCTGATGTTCC 59.452 55.000 15.95 11.01 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.871096 TGTTACATGTCTGGGGGTTC 57.129 50.000 0.00 0.00 0.00 3.62
72 74 7.621006 TCTCTATCAGTAGCTAGGTAGAACT 57.379 40.000 0.86 0.00 0.00 3.01
78 80 8.770010 ATCAGTAGCTAGGTAGAACTTACATT 57.230 34.615 0.86 0.00 0.00 2.71
79 81 8.223177 TCAGTAGCTAGGTAGAACTTACATTC 57.777 38.462 0.86 0.00 0.00 2.67
81 83 8.347035 CAGTAGCTAGGTAGAACTTACATTCTC 58.653 40.741 0.86 0.00 39.65 2.87
83 85 5.887035 AGCTAGGTAGAACTTACATTCTCGT 59.113 40.000 0.00 0.00 39.65 4.18
84 86 5.972382 GCTAGGTAGAACTTACATTCTCGTG 59.028 44.000 0.00 0.00 39.65 4.35
85 87 6.183360 GCTAGGTAGAACTTACATTCTCGTGA 60.183 42.308 0.00 0.00 39.65 4.35
86 88 6.197364 AGGTAGAACTTACATTCTCGTGAG 57.803 41.667 0.00 0.00 39.65 3.51
87 89 4.799428 GGTAGAACTTACATTCTCGTGAGC 59.201 45.833 0.00 0.00 39.65 4.26
93 126 0.179187 ACATTCTCGTGAGCTCGACG 60.179 55.000 23.87 23.87 38.20 5.12
108 141 1.957695 GACGGCCGGTCGAAAACTT 60.958 57.895 38.47 12.09 35.61 2.66
116 149 0.168128 GGTCGAAAACTTGCCCATCG 59.832 55.000 0.00 0.00 34.98 3.84
135 169 1.396996 CGGTAGACTTTTCATTGCCCG 59.603 52.381 0.00 0.00 0.00 6.13
141 175 0.097674 CTTTTCATTGCCCGCTCGAG 59.902 55.000 8.45 8.45 0.00 4.04
142 176 0.321210 TTTTCATTGCCCGCTCGAGA 60.321 50.000 18.75 0.00 0.00 4.04
144 178 2.852495 TTCATTGCCCGCTCGAGACC 62.852 60.000 18.75 0.00 0.00 3.85
145 179 3.390521 ATTGCCCGCTCGAGACCA 61.391 61.111 18.75 3.58 0.00 4.02
146 180 2.954684 ATTGCCCGCTCGAGACCAA 61.955 57.895 18.75 12.62 0.00 3.67
147 181 3.876589 TTGCCCGCTCGAGACCAAC 62.877 63.158 18.75 1.05 0.00 3.77
149 183 2.342279 CCCGCTCGAGACCAACAA 59.658 61.111 18.75 0.00 0.00 2.83
150 184 1.301401 CCCGCTCGAGACCAACAAA 60.301 57.895 18.75 0.00 0.00 2.83
155 189 2.484889 GCTCGAGACCAACAAACTCTT 58.515 47.619 18.75 0.00 0.00 2.85
176 236 4.193334 CTCCACGCGGCAGATCGA 62.193 66.667 12.47 0.00 0.00 3.59
179 239 2.026734 CACGCGGCAGATCGAGAT 59.973 61.111 12.47 0.00 34.23 2.75
195 255 1.461127 GAGATGTTCACGTGGCAGAAC 59.539 52.381 17.00 12.97 43.31 3.01
222 282 3.586039 CGACAATGACGCATGTTCC 57.414 52.632 0.00 0.00 0.00 3.62
223 283 1.078709 CGACAATGACGCATGTTCCT 58.921 50.000 0.00 0.00 0.00 3.36
224 284 2.267426 CGACAATGACGCATGTTCCTA 58.733 47.619 0.00 0.00 0.00 2.94
225 285 2.866156 CGACAATGACGCATGTTCCTAT 59.134 45.455 0.00 0.00 0.00 2.57
226 286 4.048504 CGACAATGACGCATGTTCCTATA 58.951 43.478 0.00 0.00 0.00 1.31
227 287 4.085055 CGACAATGACGCATGTTCCTATAC 60.085 45.833 0.00 0.00 0.00 1.47
228 288 3.802139 ACAATGACGCATGTTCCTATACG 59.198 43.478 0.00 0.00 0.00 3.06
229 289 1.847818 TGACGCATGTTCCTATACGC 58.152 50.000 0.00 0.00 0.00 4.42
231 291 2.881441 CGCATGTTCCTATACGCGT 58.119 52.632 19.17 19.17 38.03 6.01
232 292 2.040714 CGCATGTTCCTATACGCGTA 57.959 50.000 22.94 22.94 38.03 4.42
233 293 1.712350 CGCATGTTCCTATACGCGTAC 59.288 52.381 23.19 11.13 38.03 3.67
234 294 2.734670 GCATGTTCCTATACGCGTACA 58.265 47.619 23.19 17.06 0.00 2.90
235 295 2.470257 GCATGTTCCTATACGCGTACAC 59.530 50.000 23.19 13.30 0.00 2.90
236 296 3.697982 CATGTTCCTATACGCGTACACA 58.302 45.455 23.19 18.15 0.00 3.72
237 297 4.295870 CATGTTCCTATACGCGTACACAT 58.704 43.478 23.19 19.43 0.00 3.21
238 298 3.697982 TGTTCCTATACGCGTACACATG 58.302 45.455 23.19 8.81 0.00 3.21
239 299 3.129113 TGTTCCTATACGCGTACACATGT 59.871 43.478 23.19 7.11 0.00 3.21
240 300 4.335037 TGTTCCTATACGCGTACACATGTA 59.665 41.667 23.19 7.98 0.00 2.29
241 301 4.472691 TCCTATACGCGTACACATGTAC 57.527 45.455 23.19 11.44 45.47 2.90
242 302 3.250762 TCCTATACGCGTACACATGTACC 59.749 47.826 23.19 8.12 46.01 3.34
243 303 3.003585 CCTATACGCGTACACATGTACCA 59.996 47.826 23.19 0.00 46.01 3.25
244 304 2.547913 TACGCGTACACATGTACCAG 57.452 50.000 16.41 11.64 46.01 4.00
245 305 0.108992 ACGCGTACACATGTACCAGG 60.109 55.000 11.67 7.98 46.01 4.45
246 306 0.171679 CGCGTACACATGTACCAGGA 59.828 55.000 14.93 0.00 46.01 3.86
247 307 1.403116 CGCGTACACATGTACCAGGAA 60.403 52.381 14.93 0.00 46.01 3.36
248 308 2.268298 GCGTACACATGTACCAGGAAG 58.732 52.381 14.93 3.15 46.01 3.46
249 309 2.353406 GCGTACACATGTACCAGGAAGT 60.353 50.000 14.93 0.00 46.01 3.01
250 310 3.119388 GCGTACACATGTACCAGGAAGTA 60.119 47.826 14.93 0.00 46.01 2.24
251 311 4.418392 CGTACACATGTACCAGGAAGTAC 58.582 47.826 14.93 3.47 46.01 2.73
259 319 5.395682 TGTACCAGGAAGTACACATGTAC 57.604 43.478 13.26 13.26 45.84 2.90
270 330 5.088141 GTACACATGTACTCTATACGCGT 57.912 43.478 19.17 19.17 45.47 6.01
271 331 6.215477 GTACACATGTACTCTATACGCGTA 57.785 41.667 22.94 22.94 45.47 4.42
272 332 5.088141 ACACATGTACTCTATACGCGTAC 57.912 43.478 23.19 10.32 35.03 3.67
273 333 4.571984 ACACATGTACTCTATACGCGTACA 59.428 41.667 23.19 16.27 44.98 2.90
276 336 5.936686 ATGTACTCTATACGCGTACATGT 57.063 39.130 23.19 18.77 46.95 3.21
277 337 5.086888 TGTACTCTATACGCGTACATGTG 57.913 43.478 23.19 16.24 38.51 3.21
278 338 4.571984 TGTACTCTATACGCGTACATGTGT 59.428 41.667 23.19 20.43 38.51 3.72
279 339 3.948851 ACTCTATACGCGTACATGTGTG 58.051 45.455 23.19 12.38 33.91 3.82
280 340 3.242969 ACTCTATACGCGTACATGTGTGG 60.243 47.826 23.19 6.72 33.91 4.17
281 341 2.944349 TCTATACGCGTACATGTGTGGA 59.056 45.455 23.19 9.21 33.91 4.02
282 342 2.882927 ATACGCGTACATGTGTGGAT 57.117 45.000 23.19 0.00 33.91 3.41
283 343 2.197792 TACGCGTACATGTGTGGATC 57.802 50.000 16.41 0.00 33.91 3.36
284 344 0.530744 ACGCGTACATGTGTGGATCT 59.469 50.000 11.67 0.00 0.00 2.75
285 345 1.746787 ACGCGTACATGTGTGGATCTA 59.253 47.619 11.67 0.00 0.00 1.98
286 346 2.117137 CGCGTACATGTGTGGATCTAC 58.883 52.381 9.11 1.56 0.00 2.59
287 347 2.117137 GCGTACATGTGTGGATCTACG 58.883 52.381 9.11 8.88 32.76 3.51
288 348 2.117137 CGTACATGTGTGGATCTACGC 58.883 52.381 15.22 15.22 0.00 4.42
289 349 2.478879 CGTACATGTGTGGATCTACGCA 60.479 50.000 25.04 25.04 44.24 5.24
291 351 2.826428 ACATGTGTGGATCTACGCATC 58.174 47.619 28.98 10.01 45.77 3.91
292 352 2.432146 ACATGTGTGGATCTACGCATCT 59.568 45.455 28.98 18.73 45.77 2.90
293 353 3.636764 ACATGTGTGGATCTACGCATCTA 59.363 43.478 28.98 8.83 45.77 1.98
294 354 4.099419 ACATGTGTGGATCTACGCATCTAA 59.901 41.667 28.98 8.48 45.77 2.10
295 355 4.041740 TGTGTGGATCTACGCATCTAAC 57.958 45.455 20.12 4.24 36.26 2.34
296 356 3.699538 TGTGTGGATCTACGCATCTAACT 59.300 43.478 20.12 0.00 36.26 2.24
297 357 4.885325 TGTGTGGATCTACGCATCTAACTA 59.115 41.667 20.12 0.00 36.26 2.24
298 358 5.008712 TGTGTGGATCTACGCATCTAACTAG 59.991 44.000 20.12 0.00 36.26 2.57
299 359 5.008811 GTGTGGATCTACGCATCTAACTAGT 59.991 44.000 16.94 0.00 32.91 2.57
300 360 5.593095 TGTGGATCTACGCATCTAACTAGTT 59.407 40.000 13.68 13.68 0.00 2.24
301 361 6.769341 TGTGGATCTACGCATCTAACTAGTTA 59.231 38.462 14.52 14.52 0.00 2.24
302 362 7.041303 TGTGGATCTACGCATCTAACTAGTTAG 60.041 40.741 29.36 29.36 42.86 2.34
303 363 6.996879 TGGATCTACGCATCTAACTAGTTAGT 59.003 38.462 31.98 20.60 42.29 2.24
328 388 0.250124 CTGCAGGGACAAACCGTACA 60.250 55.000 5.57 0.00 40.11 2.90
333 393 3.869065 CAGGGACAAACCGTACATGTAT 58.131 45.455 9.18 0.00 35.42 2.29
498 722 4.201724 GCTCATCGTAATTTCTTGACGCTT 60.202 41.667 0.00 0.00 36.54 4.68
499 723 5.203358 TCATCGTAATTTCTTGACGCTTG 57.797 39.130 0.00 0.00 36.54 4.01
500 724 3.449322 TCGTAATTTCTTGACGCTTGC 57.551 42.857 0.00 0.00 36.54 4.01
571 2574 8.679100 AGAATATATACAATGGCTCTAGACGAC 58.321 37.037 0.00 0.00 0.00 4.34
658 5221 4.668576 TGTACTTACGGAACTACGACTG 57.331 45.455 0.00 0.00 37.61 3.51
684 5247 1.854743 CTGATCAAGCATGACGTACCG 59.145 52.381 0.00 0.00 38.69 4.02
685 5248 0.577269 GATCAAGCATGACGTACCGC 59.423 55.000 0.00 0.00 38.69 5.68
687 5250 0.108377 TCAAGCATGACGTACCGCAT 60.108 50.000 0.00 0.00 0.00 4.73
791 5360 1.953138 GATGGATCGACGCAGCTGG 60.953 63.158 17.12 8.27 0.00 4.85
809 5402 1.146263 GCAACCACTCCTATCCCCG 59.854 63.158 0.00 0.00 0.00 5.73
835 5428 2.839486 TAAATCTAGAGGGCATGCCG 57.161 50.000 29.90 16.10 36.85 5.69
850 5443 1.311859 TGCCGGCAATTCATCTCATC 58.688 50.000 30.74 0.00 0.00 2.92
863 5457 3.118992 TCATCTCATCTCACCCAAAGACG 60.119 47.826 0.00 0.00 0.00 4.18
941 5563 3.709587 AGCCAGTTAGCCTACTTAGTCA 58.290 45.455 0.00 0.00 0.00 3.41
942 5564 4.290942 AGCCAGTTAGCCTACTTAGTCAT 58.709 43.478 0.00 0.00 0.00 3.06
973 5595 4.410400 ACACTTAGCCGGCCAGCC 62.410 66.667 26.15 0.00 0.00 4.85
974 5596 4.408821 CACTTAGCCGGCCAGCCA 62.409 66.667 26.15 1.02 35.37 4.75
975 5597 4.410400 ACTTAGCCGGCCAGCCAC 62.410 66.667 26.15 0.00 35.37 5.01
1055 5728 3.443045 GCCACTGCACCATTCGGG 61.443 66.667 0.00 0.00 44.81 5.14
1086 5759 2.355115 GGAAATGGTGGCCGGAGT 59.645 61.111 5.05 0.00 0.00 3.85
1177 5850 3.484229 GCTGTCCGATGATTTTGACTTCG 60.484 47.826 0.00 0.00 35.65 3.79
1291 5979 8.143193 CCTATCAGAGCTATAATATTGAGCCTG 58.857 40.741 21.28 21.28 36.87 4.85
1373 6456 5.126067 CCTTGTGTAACCAGATTATCCCAG 58.874 45.833 0.00 0.00 29.58 4.45
1471 6559 3.164268 TGCAAGTGCTATCACCCAAAAT 58.836 40.909 4.69 0.00 44.16 1.82
1480 6568 7.667219 AGTGCTATCACCCAAAATCCTATATTG 59.333 37.037 0.00 0.00 44.16 1.90
1590 6681 3.544615 CATTGCTGCATCACCATCG 57.455 52.632 1.84 0.00 0.00 3.84
1798 6889 6.016276 CAGGTCAGTAAAATACAAGTTTGGCT 60.016 38.462 0.00 0.00 0.00 4.75
1921 7025 6.935208 AGTAGCCAAGTCTAAACTAAGGTTTG 59.065 38.462 4.64 0.00 44.30 2.93
2040 7146 3.243771 ACGATGTTCTTCGGAAGTTCAGT 60.244 43.478 16.78 9.63 43.33 3.41
2307 7418 2.012673 CTTCAGAACATGCCCACTAGC 58.987 52.381 0.00 0.00 0.00 3.42
2346 7457 1.604604 TGGCACTTGCAGAGTTTACC 58.395 50.000 3.15 3.40 44.36 2.85
2367 7478 4.523943 ACCATTAAGAAGTTGCAGCATCAA 59.476 37.500 8.50 0.00 0.00 2.57
2707 7834 7.555914 TCCTTCTCTAGATATCGGATTGAGATG 59.444 40.741 0.00 13.84 0.00 2.90
2753 7880 8.485392 TCTACATTGTGGATGACATCTTTGATA 58.515 33.333 14.95 0.00 39.15 2.15
2761 7888 4.777140 TGACATCTTTGATATTGTCGCG 57.223 40.909 0.00 0.00 41.02 5.87
2808 7935 2.353889 CTGAGGCGATCAAAATGTGAGG 59.646 50.000 0.00 0.00 40.43 3.86
2875 8011 7.035612 AGCAATATAGTTGCCTTTTTGTAAGC 58.964 34.615 8.96 0.00 45.98 3.09
3045 9002 6.759497 AGCAAAGTAGATACCATTTTGGAC 57.241 37.500 0.00 0.00 40.96 4.02
3046 9003 5.652452 AGCAAAGTAGATACCATTTTGGACC 59.348 40.000 0.00 0.00 40.96 4.46
3047 9004 5.652452 GCAAAGTAGATACCATTTTGGACCT 59.348 40.000 0.00 0.00 40.96 3.85
3435 9529 3.775261 ACAACGGTACCACCTATGTTT 57.225 42.857 13.54 0.00 35.66 2.83
3480 9575 2.657237 CACACCACCTCCTCCGTC 59.343 66.667 0.00 0.00 0.00 4.79
3501 9596 4.466015 GTCCCCTGCTTTAATGATTTTCCA 59.534 41.667 0.00 0.00 0.00 3.53
3676 9774 8.559536 ACTAAAATAGCATGTAAATCACGATGG 58.440 33.333 0.00 0.00 0.00 3.51
3684 9782 7.497579 AGCATGTAAATCACGATGGTTACATAA 59.502 33.333 13.12 0.00 42.44 1.90
3733 9836 5.177881 CACACGCACAATTACCTAGTTGTAA 59.822 40.000 0.00 0.00 34.88 2.41
3788 9891 4.885325 GGAAAAATTAATCCGACCTGCCTA 59.115 41.667 0.00 0.00 0.00 3.93
3815 9918 0.836606 TCTTCTGACAGTGGGCAACA 59.163 50.000 1.59 0.00 39.74 3.33
3908 10011 2.413837 AGAAACGGGATTGTCACTTCG 58.586 47.619 0.00 0.00 0.00 3.79
3925 10028 0.824109 TCGGGAGCTCCACTTGTATG 59.176 55.000 33.29 12.15 37.91 2.39
3971 10074 2.760092 GCATGAATTACCAGAGGGCAAA 59.240 45.455 0.00 0.00 37.90 3.68
3989 10092 3.181511 GCAAAAATGACGACATCCATCGA 60.182 43.478 0.00 0.00 45.13 3.59
4060 10163 2.488153 GTGCAAAGGTCTGAACATACCC 59.512 50.000 0.00 0.00 36.34 3.69
4196 10304 7.335422 AGCATGATCTAACATTTTCGTTCTTCT 59.665 33.333 0.00 0.00 0.00 2.85
4267 10375 7.290813 AGAGTTGTACCAAAGAGAAAATCCTT 58.709 34.615 0.00 0.00 0.00 3.36
4323 10431 2.225522 TGGGAGTGAATGGGAGTGTCTA 60.226 50.000 0.00 0.00 0.00 2.59
4406 10514 0.400213 AACTTTGCGAGGATGGTCCA 59.600 50.000 0.00 0.00 39.61 4.02
4407 10515 0.620556 ACTTTGCGAGGATGGTCCAT 59.379 50.000 3.26 3.26 39.61 3.41
4416 10524 3.733337 GAGGATGGTCCATGTCATGTAC 58.267 50.000 9.76 6.04 39.61 2.90
4572 10697 2.159282 GGTCGTCACGTAGGATGTTGAT 60.159 50.000 0.00 0.00 0.00 2.57
4694 12059 9.162764 TGAAATGTATGATGAGATGCATATGAG 57.837 33.333 6.97 0.00 37.34 2.90
4695 12060 9.163899 GAAATGTATGATGAGATGCATATGAGT 57.836 33.333 6.97 0.00 37.34 3.41
4837 12936 8.792830 TTACATTTAGTTCTAGCAATGCTCTT 57.207 30.769 12.53 0.00 40.44 2.85
4838 12937 9.884636 TTACATTTAGTTCTAGCAATGCTCTTA 57.115 29.630 12.53 0.00 40.44 2.10
4957 13058 1.123928 ATTGCAAACGGGGTTTTGGA 58.876 45.000 1.71 0.00 37.02 3.53
5123 13234 3.740115 AGACAGAATTACCCACACACAC 58.260 45.455 0.00 0.00 0.00 3.82
5124 13235 2.478894 GACAGAATTACCCACACACACG 59.521 50.000 0.00 0.00 0.00 4.49
5145 13256 3.737266 CGTAGCAAAGAAGTGTAAACCGA 59.263 43.478 0.00 0.00 0.00 4.69
5309 13426 0.107831 TTTCTTGTAGCTGTGGCGGT 59.892 50.000 0.00 0.00 44.37 5.68
5366 15033 1.068474 CCGCTTGTAAGACTTCACGG 58.932 55.000 0.00 0.00 0.00 4.94
5408 15075 6.028368 CCTACTAGCACAATATATTCGACCG 58.972 44.000 0.00 0.00 0.00 4.79
5470 15137 1.475682 ACTATTCCCGTGTCCTCGAAC 59.524 52.381 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.055458 ACAACAACAAAAAGAACCCCCAG 60.055 43.478 0.00 0.00 0.00 4.45
27 28 3.249917 AGCGGTCAACAACAACAAAAAG 58.750 40.909 0.00 0.00 0.00 2.27
72 74 2.475685 CGTCGAGCTCACGAGAATGTAA 60.476 50.000 24.93 0.00 42.88 2.41
78 80 3.800863 GCCGTCGAGCTCACGAGA 61.801 66.667 28.48 11.55 42.88 4.04
79 81 4.838486 GGCCGTCGAGCTCACGAG 62.838 72.222 28.48 21.53 42.88 4.18
93 126 2.254350 GCAAGTTTTCGACCGGCC 59.746 61.111 0.00 0.00 0.00 6.13
98 131 0.168128 CCGATGGGCAAGTTTTCGAC 59.832 55.000 0.00 0.00 31.74 4.20
101 134 2.418976 GTCTACCGATGGGCAAGTTTTC 59.581 50.000 0.00 0.00 36.48 2.29
105 138 1.276622 AAGTCTACCGATGGGCAAGT 58.723 50.000 0.00 0.00 36.48 3.16
108 141 1.626321 TGAAAAGTCTACCGATGGGCA 59.374 47.619 0.00 0.00 36.48 5.36
116 149 1.132453 GCGGGCAATGAAAAGTCTACC 59.868 52.381 0.00 0.00 0.00 3.18
135 169 2.156343 AGAGTTTGTTGGTCTCGAGC 57.844 50.000 7.81 2.69 33.96 5.03
141 175 4.273724 GTGGAGAGAAAGAGTTTGTTGGTC 59.726 45.833 0.00 0.00 0.00 4.02
142 176 4.200092 GTGGAGAGAAAGAGTTTGTTGGT 58.800 43.478 0.00 0.00 0.00 3.67
144 178 3.303395 GCGTGGAGAGAAAGAGTTTGTTG 60.303 47.826 0.00 0.00 0.00 3.33
145 179 2.872858 GCGTGGAGAGAAAGAGTTTGTT 59.127 45.455 0.00 0.00 0.00 2.83
146 180 2.484889 GCGTGGAGAGAAAGAGTTTGT 58.515 47.619 0.00 0.00 0.00 2.83
147 181 1.457303 CGCGTGGAGAGAAAGAGTTTG 59.543 52.381 0.00 0.00 0.00 2.93
149 183 0.038159 CCGCGTGGAGAGAAAGAGTT 60.038 55.000 10.20 0.00 37.49 3.01
150 184 1.587054 CCGCGTGGAGAGAAAGAGT 59.413 57.895 10.20 0.00 37.49 3.24
155 189 2.284798 GATCTGCCGCGTGGAGAGAA 62.285 60.000 21.76 4.38 37.49 2.87
176 236 1.512926 GTTCTGCCACGTGAACATCT 58.487 50.000 19.30 0.00 41.35 2.90
179 239 2.530497 GCGTTCTGCCACGTGAACA 61.530 57.895 19.30 13.93 41.67 3.18
204 264 1.078709 AGGAACATGCGTCATTGTCG 58.921 50.000 0.00 0.00 0.00 4.35
205 265 4.085055 CGTATAGGAACATGCGTCATTGTC 60.085 45.833 0.00 0.00 30.56 3.18
206 266 3.802139 CGTATAGGAACATGCGTCATTGT 59.198 43.478 0.00 0.00 30.56 2.71
207 267 3.362986 GCGTATAGGAACATGCGTCATTG 60.363 47.826 0.00 0.00 36.54 2.82
208 268 2.800544 GCGTATAGGAACATGCGTCATT 59.199 45.455 0.00 0.00 36.54 2.57
209 269 2.404215 GCGTATAGGAACATGCGTCAT 58.596 47.619 0.00 0.00 36.54 3.06
210 270 1.847818 GCGTATAGGAACATGCGTCA 58.152 50.000 0.00 0.00 36.54 4.35
211 271 0.776451 CGCGTATAGGAACATGCGTC 59.224 55.000 0.00 0.00 43.41 5.19
212 272 2.881441 CGCGTATAGGAACATGCGT 58.119 52.632 0.00 0.00 43.41 5.24
214 274 2.470257 GTGTACGCGTATAGGAACATGC 59.530 50.000 23.56 5.75 0.00 4.06
215 275 3.697982 TGTGTACGCGTATAGGAACATG 58.302 45.455 23.56 0.00 0.00 3.21
216 276 4.202080 ACATGTGTACGCGTATAGGAACAT 60.202 41.667 23.56 20.97 0.00 2.71
217 277 3.129113 ACATGTGTACGCGTATAGGAACA 59.871 43.478 23.56 19.83 0.00 3.18
218 278 3.699067 ACATGTGTACGCGTATAGGAAC 58.301 45.455 23.56 11.60 0.00 3.62
219 279 4.847633 GTACATGTGTACGCGTATAGGAA 58.152 43.478 23.56 8.73 41.06 3.36
220 280 4.472691 GTACATGTGTACGCGTATAGGA 57.527 45.455 23.56 9.59 41.06 2.94
230 290 5.395682 TGTACTTCCTGGTACATGTGTAC 57.604 43.478 9.11 13.54 44.54 2.90
237 297 5.395682 GTACATGTGTACTTCCTGGTACA 57.604 43.478 9.11 3.74 46.37 2.90
257 317 4.024641 CCACACATGTACGCGTATAGAGTA 60.025 45.833 23.56 5.59 33.96 2.59
258 318 3.242969 CCACACATGTACGCGTATAGAGT 60.243 47.826 23.56 18.43 36.63 3.24
259 319 3.002965 TCCACACATGTACGCGTATAGAG 59.997 47.826 23.56 17.79 0.00 2.43
260 320 2.944349 TCCACACATGTACGCGTATAGA 59.056 45.455 23.56 9.15 0.00 1.98
261 321 3.343380 TCCACACATGTACGCGTATAG 57.657 47.619 23.56 16.80 0.00 1.31
262 322 3.566742 AGATCCACACATGTACGCGTATA 59.433 43.478 23.56 20.78 0.00 1.47
263 323 2.361119 AGATCCACACATGTACGCGTAT 59.639 45.455 23.56 5.29 0.00 3.06
264 324 1.746787 AGATCCACACATGTACGCGTA 59.253 47.619 16.41 16.41 0.00 4.42
265 325 0.530744 AGATCCACACATGTACGCGT 59.469 50.000 19.17 19.17 0.00 6.01
266 326 2.117137 GTAGATCCACACATGTACGCG 58.883 52.381 3.53 3.53 0.00 6.01
267 327 2.117137 CGTAGATCCACACATGTACGC 58.883 52.381 0.00 0.00 38.65 4.42
268 328 2.117137 GCGTAGATCCACACATGTACG 58.883 52.381 0.00 3.36 44.69 3.67
269 329 3.159353 TGCGTAGATCCACACATGTAC 57.841 47.619 0.00 0.00 0.00 2.90
270 330 3.636764 AGATGCGTAGATCCACACATGTA 59.363 43.478 0.00 0.00 0.00 2.29
271 331 2.432146 AGATGCGTAGATCCACACATGT 59.568 45.455 0.00 0.00 0.00 3.21
272 332 3.103447 AGATGCGTAGATCCACACATG 57.897 47.619 0.00 0.00 0.00 3.21
273 333 4.342378 AGTTAGATGCGTAGATCCACACAT 59.658 41.667 0.00 0.00 0.00 3.21
274 334 3.699538 AGTTAGATGCGTAGATCCACACA 59.300 43.478 0.00 0.00 0.00 3.72
275 335 4.308899 AGTTAGATGCGTAGATCCACAC 57.691 45.455 0.00 0.00 0.00 3.82
276 336 5.131067 ACTAGTTAGATGCGTAGATCCACA 58.869 41.667 0.00 0.00 0.00 4.17
277 337 5.692613 ACTAGTTAGATGCGTAGATCCAC 57.307 43.478 0.00 0.00 0.00 4.02
278 338 6.996879 ACTAACTAGTTAGATGCGTAGATCCA 59.003 38.462 37.56 6.54 43.90 3.41
279 339 7.437793 ACTAACTAGTTAGATGCGTAGATCC 57.562 40.000 37.56 0.00 43.90 3.36
294 354 4.469945 TCCCTGCAGCAATAACTAACTAGT 59.530 41.667 8.66 0.00 38.39 2.57
295 355 4.811557 GTCCCTGCAGCAATAACTAACTAG 59.188 45.833 8.66 0.00 0.00 2.57
296 356 4.224147 TGTCCCTGCAGCAATAACTAACTA 59.776 41.667 8.66 0.00 0.00 2.24
297 357 3.009033 TGTCCCTGCAGCAATAACTAACT 59.991 43.478 8.66 0.00 0.00 2.24
298 358 3.343617 TGTCCCTGCAGCAATAACTAAC 58.656 45.455 8.66 0.00 0.00 2.34
299 359 3.712016 TGTCCCTGCAGCAATAACTAA 57.288 42.857 8.66 0.00 0.00 2.24
300 360 3.712016 TTGTCCCTGCAGCAATAACTA 57.288 42.857 8.66 0.00 0.00 2.24
301 361 2.558359 GTTTGTCCCTGCAGCAATAACT 59.442 45.455 8.66 0.00 0.00 2.24
302 362 2.352715 GGTTTGTCCCTGCAGCAATAAC 60.353 50.000 8.66 8.12 0.00 1.89
303 363 1.892474 GGTTTGTCCCTGCAGCAATAA 59.108 47.619 8.66 0.00 0.00 1.40
379 439 5.449113 GTGTACGTACGATGTGTGTGTATAC 59.551 44.000 24.41 9.57 31.63 1.47
382 442 3.664014 CGTGTACGTACGATGTGTGTGTA 60.664 47.826 24.41 0.00 46.46 2.90
498 722 2.668550 CTGTCAGCAGCAGCAGCA 60.669 61.111 12.92 0.00 45.49 4.41
556 2559 3.963428 AGTTTGTCGTCTAGAGCCATT 57.037 42.857 0.00 0.00 0.00 3.16
571 2574 6.366604 TGCATGCACTCATCAAATTTAGTTTG 59.633 34.615 18.46 0.00 46.86 2.93
586 2589 0.095935 GTCACGTGATGCATGCACTC 59.904 55.000 25.37 20.60 34.18 3.51
609 2614 6.597672 ACATTTAATAATTCACCTCGCTCACA 59.402 34.615 0.00 0.00 0.00 3.58
645 2677 3.434641 TCAGTTAGTCAGTCGTAGTTCCG 59.565 47.826 0.00 0.00 0.00 4.30
658 5221 4.177026 ACGTCATGCTTGATCAGTTAGTC 58.823 43.478 5.49 0.00 33.56 2.59
791 5360 1.146263 CGGGGATAGGAGTGGTTGC 59.854 63.158 0.00 0.00 0.00 4.17
835 5428 2.883386 GGGTGAGATGAGATGAATTGCC 59.117 50.000 0.00 0.00 0.00 4.52
850 5443 1.714794 CTGCTACGTCTTTGGGTGAG 58.285 55.000 0.00 0.00 0.00 3.51
941 5563 4.684703 GCTAAGTGTGTCGTGTTACAGAAT 59.315 41.667 0.00 0.00 0.00 2.40
942 5564 4.046462 GCTAAGTGTGTCGTGTTACAGAA 58.954 43.478 0.00 0.00 0.00 3.02
973 5595 2.666317 CTTAATTAAGGGGGCTGGGTG 58.334 52.381 16.19 0.00 0.00 4.61
974 5596 1.063190 GCTTAATTAAGGGGGCTGGGT 60.063 52.381 23.37 0.00 33.95 4.51
975 5597 1.063266 TGCTTAATTAAGGGGGCTGGG 60.063 52.381 23.37 0.00 33.95 4.45
976 5598 2.430694 GTTGCTTAATTAAGGGGGCTGG 59.569 50.000 23.37 0.65 33.95 4.85
977 5599 2.430694 GGTTGCTTAATTAAGGGGGCTG 59.569 50.000 23.37 1.32 33.95 4.85
984 5606 4.601019 CAGCCATCGGTTGCTTAATTAAG 58.399 43.478 19.08 19.08 35.12 1.85
1055 5728 0.322187 ATTTCCAGCCACCGGTGTAC 60.322 55.000 31.80 23.17 35.65 2.90
1057 5730 1.603455 CATTTCCAGCCACCGGTGT 60.603 57.895 31.80 13.15 35.65 4.16
1093 5766 3.423154 GCGGAAGAAGGCACGGTG 61.423 66.667 3.15 3.15 0.00 4.94
1520 6608 4.692155 TGTTGCACAGAGACATCATACTTG 59.308 41.667 0.00 0.00 0.00 3.16
1525 6613 2.810274 GTGTGTTGCACAGAGACATCAT 59.190 45.455 1.86 0.00 45.43 2.45
1590 6681 1.364626 TAAGCCTCGTCGACTCGTCC 61.365 60.000 14.70 0.00 0.00 4.79
1798 6889 8.506168 ACTTGTTTGTTTATCTGTCTTGAGAA 57.494 30.769 0.00 0.00 0.00 2.87
2040 7146 7.148154 CCAAGGTTGAAATCACCATTATCGTTA 60.148 37.037 0.00 0.00 0.00 3.18
2307 7418 4.142773 GCCAAATTCTCAATTGCCATGTTG 60.143 41.667 0.00 2.72 0.00 3.33
2346 7457 6.384224 TCTTTGATGCTGCAACTTCTTAATG 58.616 36.000 6.36 0.00 0.00 1.90
2367 7478 5.942826 CCTCTTAACCTCTTGCATTTCTCTT 59.057 40.000 0.00 0.00 0.00 2.85
2707 7834 7.445121 TGTAGACCATGGATATGATCTTTGTC 58.555 38.462 21.47 0.00 33.09 3.18
2753 7880 0.317160 TCCTCTTGTGTCGCGACAAT 59.683 50.000 40.60 0.00 43.77 2.71
2761 7888 1.349357 AGGGAAAGCTCCTCTTGTGTC 59.651 52.381 0.00 0.00 42.05 3.67
3023 8980 5.652452 AGGTCCAAAATGGTATCTACTTTGC 59.348 40.000 0.00 0.00 39.03 3.68
3024 8981 8.801882 TTAGGTCCAAAATGGTATCTACTTTG 57.198 34.615 0.00 0.00 39.03 2.77
3025 8982 7.556635 GCTTAGGTCCAAAATGGTATCTACTTT 59.443 37.037 0.00 0.00 39.03 2.66
3026 8983 7.054751 GCTTAGGTCCAAAATGGTATCTACTT 58.945 38.462 0.00 0.00 39.03 2.24
3028 8985 6.354130 TGCTTAGGTCCAAAATGGTATCTAC 58.646 40.000 0.00 0.00 39.03 2.59
3029 8986 6.569127 TGCTTAGGTCCAAAATGGTATCTA 57.431 37.500 0.00 0.00 39.03 1.98
3031 8988 6.524101 TTTGCTTAGGTCCAAAATGGTATC 57.476 37.500 0.00 0.00 39.03 2.24
3032 8989 6.926630 TTTTGCTTAGGTCCAAAATGGTAT 57.073 33.333 0.00 0.00 39.03 2.73
3033 8990 6.551601 TCTTTTTGCTTAGGTCCAAAATGGTA 59.448 34.615 0.00 0.00 39.72 3.25
3034 8991 5.365314 TCTTTTTGCTTAGGTCCAAAATGGT 59.635 36.000 0.00 0.00 39.72 3.55
3035 8992 5.852827 TCTTTTTGCTTAGGTCCAAAATGG 58.147 37.500 0.00 0.00 39.72 3.16
3036 8993 7.784633 TTTCTTTTTGCTTAGGTCCAAAATG 57.215 32.000 0.00 0.00 39.72 2.32
3037 8994 8.800370 TTTTTCTTTTTGCTTAGGTCCAAAAT 57.200 26.923 0.00 0.00 39.72 1.82
3070 9032 5.972256 CCATTTTGGACCTAAGCAAAAAGCA 60.972 40.000 0.00 0.00 43.26 3.91
3071 9033 4.452114 CCATTTTGGACCTAAGCAAAAAGC 59.548 41.667 0.00 0.00 40.96 3.51
3075 9037 2.968574 TGCCATTTTGGACCTAAGCAAA 59.031 40.909 0.00 0.00 40.96 3.68
3480 9575 5.419239 TTGGAAAATCATTAAAGCAGGGG 57.581 39.130 0.00 0.00 0.00 4.79
3501 9596 4.760204 AGACGATTCGAGGAAATTTGGTTT 59.240 37.500 13.95 0.00 0.00 3.27
3621 9718 6.430000 AGTGCGACTACATACCAAAAAGAAAT 59.570 34.615 0.00 0.00 0.00 2.17
3815 9918 6.016527 CCTCGATCATGAATCCATCAAACAAT 60.017 38.462 0.00 0.00 42.54 2.71
3875 9978 4.863548 TCCCGTTTCTTAGATAGTCCTCA 58.136 43.478 0.00 0.00 0.00 3.86
3908 10011 0.253044 TGCATACAAGTGGAGCTCCC 59.747 55.000 29.95 20.23 34.29 4.30
3925 10028 6.925165 CCCCAACATGAATAAAAGATGTATGC 59.075 38.462 0.00 0.00 30.07 3.14
3971 10074 4.441792 TGATTCGATGGATGTCGTCATTT 58.558 39.130 0.00 0.00 42.07 2.32
3989 10092 0.627451 TTGCAGGGCAGGAGATGATT 59.373 50.000 0.00 0.00 40.61 2.57
4060 10163 8.877779 CCTAAGTTCTTATGTGATCAAGTTCTG 58.122 37.037 0.00 0.00 0.00 3.02
4170 10275 6.992063 AGAACGAAAATGTTAGATCATGCT 57.008 33.333 0.00 0.00 30.75 3.79
4196 10304 2.216046 GCGATTCATCCTGCATGAGAA 58.784 47.619 0.00 2.75 42.76 2.87
4267 10375 1.300931 GCTTCTCTGCGTCACCACA 60.301 57.895 0.00 0.00 0.00 4.17
4406 10514 1.746787 TGTCGTAGCCGTACATGACAT 59.253 47.619 0.00 0.00 35.01 3.06
4407 10515 1.166989 TGTCGTAGCCGTACATGACA 58.833 50.000 0.00 2.68 35.01 3.58
4416 10524 2.126618 TGCTCGTTGTCGTAGCCG 60.127 61.111 0.00 0.00 38.45 5.52
4529 10651 7.493320 CGACCTACCAAAAACTAATGCACTATA 59.507 37.037 0.00 0.00 0.00 1.31
4530 10652 6.315393 CGACCTACCAAAAACTAATGCACTAT 59.685 38.462 0.00 0.00 0.00 2.12
4572 10697 2.816672 TGCGAATTGTGCAGGATGTTAA 59.183 40.909 0.00 0.00 39.31 2.01
4633 11994 3.402628 TGTAGGCTGTTCCTGACTTTC 57.597 47.619 0.00 0.00 46.98 2.62
4837 12936 4.719773 ACCCATCTGCCTTATTGTGTACTA 59.280 41.667 0.00 0.00 0.00 1.82
4838 12937 3.523564 ACCCATCTGCCTTATTGTGTACT 59.476 43.478 0.00 0.00 0.00 2.73
4957 13058 3.958147 GTCCCCGTCATAAATTGGGAAAT 59.042 43.478 0.00 0.00 46.47 2.17
5100 13211 4.689345 GTGTGTGTGGGTAATTCTGTCTAC 59.311 45.833 0.00 0.00 0.00 2.59
5123 13234 3.737266 TCGGTTTACACTTCTTTGCTACG 59.263 43.478 0.00 0.00 0.00 3.51
5124 13235 5.662211 TTCGGTTTACACTTCTTTGCTAC 57.338 39.130 0.00 0.00 0.00 3.58
5145 13256 7.724061 ACTCCAGTGAATTTTAAGTGTACCATT 59.276 33.333 0.00 0.00 0.00 3.16
5186 13297 5.607477 AGACCGAAATCAAATAATCCGCTA 58.393 37.500 0.00 0.00 0.00 4.26
5205 13316 1.740025 GCTGGTGTGAAATGCTAGACC 59.260 52.381 0.00 0.00 0.00 3.85
5408 15075 0.548031 TGGCTCCCATCTGATGTTCC 59.452 55.000 15.95 11.01 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.