Multiple sequence alignment - TraesCS6A01G067600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G067600 chr6A 100.000 5300 0 0 1 5300 36057439 36052140 0.000000e+00 9788
1 TraesCS6A01G067600 chr6A 97.875 4753 77 6 569 5300 35991478 35986729 0.000000e+00 8196
2 TraesCS6A01G067600 chr6A 96.774 248 5 2 1 248 35991889 35991645 1.370000e-110 411
3 TraesCS6A01G067600 chr6A 90.476 147 14 0 4412 4558 33185090 33184944 1.510000e-45 195
4 TraesCS6A01G067600 chr6A 90.850 153 3 3 443 584 35991647 35991495 1.510000e-45 195
5 TraesCS6A01G067600 chrUn 95.127 3981 159 18 453 4409 100489229 100493198 0.000000e+00 6244
6 TraesCS6A01G067600 chrUn 94.805 3080 111 15 2078 5113 100620877 100623951 0.000000e+00 4756
7 TraesCS6A01G067600 chrUn 95.682 2362 82 6 453 2800 323635624 323637979 0.000000e+00 3779
8 TraesCS6A01G067600 chrUn 95.682 2362 81 7 453 2800 323667481 323669835 0.000000e+00 3777
9 TraesCS6A01G067600 chrUn 94.919 2165 98 6 1089 3243 100637283 100639445 0.000000e+00 3378
10 TraesCS6A01G067600 chrUn 93.605 2064 108 8 3254 5298 100660342 100662400 0.000000e+00 3059
11 TraesCS6A01G067600 chrUn 97.126 1566 42 3 2802 4365 344891260 344892824 0.000000e+00 2639
12 TraesCS6A01G067600 chrUn 94.833 1645 63 8 453 2080 100619125 100620764 0.000000e+00 2547
13 TraesCS6A01G067600 chrUn 94.634 1230 48 5 453 1670 329023692 329024915 0.000000e+00 1890
14 TraesCS6A01G067600 chrUn 94.634 1230 48 5 453 1670 329103055 329104278 0.000000e+00 1890
15 TraesCS6A01G067600 chrUn 94.634 1230 48 5 453 1670 361925706 361926929 0.000000e+00 1890
16 TraesCS6A01G067600 chrUn 90.960 719 36 11 4412 5113 344892827 344893533 0.000000e+00 941
17 TraesCS6A01G067600 chrUn 94.397 232 8 2 1 227 100488074 100488305 8.450000e-93 351
18 TraesCS6A01G067600 chrUn 91.870 246 12 5 1 246 323635373 323635610 2.360000e-88 337
19 TraesCS6A01G067600 chrUn 91.870 246 12 5 1 246 323667230 323667467 2.360000e-88 337
20 TraesCS6A01G067600 chrUn 91.870 246 12 5 1 246 329023441 329023678 2.360000e-88 337
21 TraesCS6A01G067600 chrUn 91.870 246 12 5 1 246 329102804 329103041 2.360000e-88 337
22 TraesCS6A01G067600 chrUn 91.870 246 12 5 1 246 361925455 361925692 2.360000e-88 337
23 TraesCS6A01G067600 chrUn 86.145 332 14 6 459 784 100488606 100488911 3.960000e-86 329
24 TraesCS6A01G067600 chrUn 91.057 246 14 5 1 246 100488978 100489215 5.120000e-85 326
25 TraesCS6A01G067600 chrUn 91.057 246 14 5 1 246 100618874 100619111 5.120000e-85 326
26 TraesCS6A01G067600 chr6B 92.793 3982 191 41 688 4602 66945931 66941979 0.000000e+00 5675
27 TraesCS6A01G067600 chr6B 94.192 3616 164 21 998 4603 66863100 66859521 0.000000e+00 5472
28 TraesCS6A01G067600 chr6B 94.017 3627 163 17 998 4603 66920981 66917388 0.000000e+00 5446
29 TraesCS6A01G067600 chr6B 88.053 2193 216 24 1471 3647 66786422 66784260 0.000000e+00 2556
30 TraesCS6A01G067600 chr6B 91.862 811 58 7 3604 4408 66784256 66783448 0.000000e+00 1125
31 TraesCS6A01G067600 chr6B 88.766 721 52 13 4600 5298 66828845 66828132 0.000000e+00 856
32 TraesCS6A01G067600 chr6B 88.630 686 54 13 4632 5300 66917289 66916611 0.000000e+00 813
33 TraesCS6A01G067600 chr6B 90.476 147 14 0 4412 4558 60087423 60087277 1.510000e-45 195
34 TraesCS6A01G067600 chr7A 97.403 1617 39 2 1554 3167 255897065 255895449 0.000000e+00 2750
35 TraesCS6A01G067600 chr7A 93.269 208 11 3 241 445 521802171 521802378 2.400000e-78 303
36 TraesCS6A01G067600 chr5A 83.709 399 57 6 4902 5299 325833376 325832985 2.330000e-98 370
37 TraesCS6A01G067600 chr5A 93.035 201 13 1 246 445 669761251 669761051 5.190000e-75 292
38 TraesCS6A01G067600 chr2D 83.623 403 57 8 4903 5300 129356327 129356725 2.330000e-98 370
39 TraesCS6A01G067600 chr2D 92.683 205 14 1 246 449 622491458 622491662 1.440000e-75 294
40 TraesCS6A01G067600 chr1B 82.544 401 63 4 4903 5300 539874706 539875102 3.930000e-91 346
41 TraesCS6A01G067600 chr1D 94.030 201 10 2 246 445 145585813 145585614 2.400000e-78 303
42 TraesCS6A01G067600 chr6D 93.564 202 13 0 246 447 50771849 50771648 8.630000e-78 302
43 TraesCS6A01G067600 chr6D 92.308 208 13 3 246 451 155841616 155841822 5.190000e-75 292
44 TraesCS6A01G067600 chr6D 91.333 150 13 0 4409 4558 29228853 29229002 6.960000e-49 206
45 TraesCS6A01G067600 chr7D 92.233 206 15 1 246 450 7524408 7524613 1.870000e-74 291
46 TraesCS6A01G067600 chr2A 93.401 197 11 2 248 443 16732146 16731951 1.870000e-74 291
47 TraesCS6A01G067600 chr1A 92.537 201 13 2 244 443 586372926 586372727 2.420000e-73 287


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G067600 chr6A 36052140 36057439 5299 True 9788.0 9788 100.000000 1 5300 1 chr6A.!!$R2 5299
1 TraesCS6A01G067600 chr6A 35986729 35991889 5160 True 2934.0 8196 95.166333 1 5300 3 chr6A.!!$R3 5299
2 TraesCS6A01G067600 chrUn 100637283 100639445 2162 False 3378.0 3378 94.919000 1089 3243 1 chrUn.!!$F1 2154
3 TraesCS6A01G067600 chrUn 100660342 100662400 2058 False 3059.0 3059 93.605000 3254 5298 1 chrUn.!!$F2 2044
4 TraesCS6A01G067600 chrUn 100618874 100623951 5077 False 2543.0 4756 93.565000 1 5113 3 chrUn.!!$F4 5112
5 TraesCS6A01G067600 chrUn 323635373 323637979 2606 False 2058.0 3779 93.776000 1 2800 2 chrUn.!!$F5 2799
6 TraesCS6A01G067600 chrUn 323667230 323669835 2605 False 2057.0 3777 93.776000 1 2800 2 chrUn.!!$F6 2799
7 TraesCS6A01G067600 chrUn 100488074 100493198 5124 False 1812.5 6244 91.681500 1 4409 4 chrUn.!!$F3 4408
8 TraesCS6A01G067600 chrUn 344891260 344893533 2273 False 1790.0 2639 94.043000 2802 5113 2 chrUn.!!$F9 2311
9 TraesCS6A01G067600 chrUn 329023441 329024915 1474 False 1113.5 1890 93.252000 1 1670 2 chrUn.!!$F7 1669
10 TraesCS6A01G067600 chrUn 329102804 329104278 1474 False 1113.5 1890 93.252000 1 1670 2 chrUn.!!$F8 1669
11 TraesCS6A01G067600 chrUn 361925455 361926929 1474 False 1113.5 1890 93.252000 1 1670 2 chrUn.!!$F10 1669
12 TraesCS6A01G067600 chr6B 66941979 66945931 3952 True 5675.0 5675 92.793000 688 4602 1 chr6B.!!$R4 3914
13 TraesCS6A01G067600 chr6B 66859521 66863100 3579 True 5472.0 5472 94.192000 998 4603 1 chr6B.!!$R3 3605
14 TraesCS6A01G067600 chr6B 66916611 66920981 4370 True 3129.5 5446 91.323500 998 5300 2 chr6B.!!$R6 4302
15 TraesCS6A01G067600 chr6B 66783448 66786422 2974 True 1840.5 2556 89.957500 1471 4408 2 chr6B.!!$R5 2937
16 TraesCS6A01G067600 chr6B 66828132 66828845 713 True 856.0 856 88.766000 4600 5298 1 chr6B.!!$R2 698
17 TraesCS6A01G067600 chr7A 255895449 255897065 1616 True 2750.0 2750 97.403000 1554 3167 1 chr7A.!!$R1 1613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 1331 0.176910 GCACCTCTCCTAAGCACCTC 59.823 60.0 0.00 0.0 0.0 3.85 F
429 1334 0.325671 CCTCTCCTAAGCACCTCCCA 60.326 60.0 0.00 0.0 0.0 4.37 F
441 1346 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.0 14.66 0.0 0.0 5.19 F
442 1347 0.625849 CCTCCCATTGTACAAGGCCT 59.374 55.0 14.66 0.0 0.0 5.19 F
497 1408 1.059913 CCTTTCGATGGCCCCTCTAT 58.940 55.0 0.00 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2035 3085 1.693062 TGCTACACAAGGGACCGTTAA 59.307 47.619 0.0 0.0 0.00 2.01 R
3830 5090 2.045524 TCCCAGAGCCTCATGATCTTC 58.954 52.381 0.0 0.0 0.00 2.87 R
3990 5252 7.977293 CACATAATTTCTTTTCAGATCATGCCA 59.023 33.333 0.0 0.0 0.00 4.92 R
4200 5462 4.015084 CCATCCTTGCAAAGTTGAGAGAT 58.985 43.478 0.0 0.0 44.25 2.75 R
4410 5674 2.688507 AGTATCGTTTGTGGAGCAGTG 58.311 47.619 0.0 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
233 1138 9.781633 AGGTTATAATATTTGGCATACGTACAA 57.218 29.630 0.00 0.00 0.00 2.41
248 1153 3.918591 ACGTACAATGTCGTGAGCTTAAG 59.081 43.478 9.35 0.00 38.85 1.85
249 1154 3.303495 CGTACAATGTCGTGAGCTTAAGG 59.697 47.826 4.29 0.00 0.00 2.69
250 1155 2.076863 ACAATGTCGTGAGCTTAAGGC 58.923 47.619 4.29 0.00 42.19 4.35
251 1156 1.398390 CAATGTCGTGAGCTTAAGGCC 59.602 52.381 4.29 0.00 43.05 5.19
252 1157 0.905357 ATGTCGTGAGCTTAAGGCCT 59.095 50.000 0.00 0.00 43.05 5.19
253 1158 0.685097 TGTCGTGAGCTTAAGGCCTT 59.315 50.000 24.18 24.18 43.05 4.35
254 1159 1.897133 TGTCGTGAGCTTAAGGCCTTA 59.103 47.619 21.68 21.68 43.05 2.69
255 1160 2.500098 TGTCGTGAGCTTAAGGCCTTAT 59.500 45.455 25.70 11.51 43.05 1.73
257 1162 4.049869 GTCGTGAGCTTAAGGCCTTATAC 58.950 47.826 25.70 19.42 43.05 1.47
258 1163 3.702548 TCGTGAGCTTAAGGCCTTATACA 59.297 43.478 25.70 18.37 43.05 2.29
259 1164 4.160814 TCGTGAGCTTAAGGCCTTATACAA 59.839 41.667 25.70 11.95 43.05 2.41
260 1165 5.057149 CGTGAGCTTAAGGCCTTATACAAT 58.943 41.667 25.70 10.50 43.05 2.71
261 1166 5.050091 CGTGAGCTTAAGGCCTTATACAATG 60.050 44.000 25.70 13.58 43.05 2.82
262 1167 5.239525 GTGAGCTTAAGGCCTTATACAATGG 59.760 44.000 25.70 10.82 43.05 3.16
263 1168 5.131977 TGAGCTTAAGGCCTTATACAATGGA 59.868 40.000 25.70 7.53 43.05 3.41
264 1169 6.013554 AGCTTAAGGCCTTATACAATGGAA 57.986 37.500 25.70 8.61 43.05 3.53
265 1170 6.064717 AGCTTAAGGCCTTATACAATGGAAG 58.935 40.000 25.70 18.24 43.05 3.46
266 1171 6.062095 GCTTAAGGCCTTATACAATGGAAGA 58.938 40.000 25.70 5.55 34.27 2.87
267 1172 6.717084 GCTTAAGGCCTTATACAATGGAAGAT 59.283 38.462 25.70 0.00 34.27 2.40
268 1173 7.231519 GCTTAAGGCCTTATACAATGGAAGATT 59.768 37.037 25.70 0.00 34.27 2.40
269 1174 8.691661 TTAAGGCCTTATACAATGGAAGATTC 57.308 34.615 25.70 0.00 0.00 2.52
270 1175 6.521527 AGGCCTTATACAATGGAAGATTCT 57.478 37.500 0.00 0.00 0.00 2.40
271 1176 6.915786 AGGCCTTATACAATGGAAGATTCTT 58.084 36.000 0.00 0.00 0.00 2.52
272 1177 8.045720 AGGCCTTATACAATGGAAGATTCTTA 57.954 34.615 0.00 0.00 0.00 2.10
273 1178 8.160106 AGGCCTTATACAATGGAAGATTCTTAG 58.840 37.037 0.00 0.00 0.00 2.18
274 1179 7.391833 GGCCTTATACAATGGAAGATTCTTAGG 59.608 40.741 0.00 0.03 0.00 2.69
275 1180 8.157476 GCCTTATACAATGGAAGATTCTTAGGA 58.843 37.037 0.00 0.00 0.00 2.94
280 1185 7.693969 ACAATGGAAGATTCTTAGGAAAGTG 57.306 36.000 0.00 0.00 34.90 3.16
281 1186 6.151817 ACAATGGAAGATTCTTAGGAAAGTGC 59.848 38.462 0.00 0.00 34.90 4.40
282 1187 5.505181 TGGAAGATTCTTAGGAAAGTGCT 57.495 39.130 0.00 0.00 34.90 4.40
283 1188 5.880901 TGGAAGATTCTTAGGAAAGTGCTT 58.119 37.500 0.00 0.00 34.90 3.91
284 1189 7.016153 TGGAAGATTCTTAGGAAAGTGCTTA 57.984 36.000 0.00 0.00 34.90 3.09
285 1190 7.106239 TGGAAGATTCTTAGGAAAGTGCTTAG 58.894 38.462 0.00 0.00 34.90 2.18
286 1191 7.038302 TGGAAGATTCTTAGGAAAGTGCTTAGA 60.038 37.037 0.00 0.00 34.90 2.10
287 1192 7.824779 GGAAGATTCTTAGGAAAGTGCTTAGAA 59.175 37.037 0.00 1.58 37.74 2.10
288 1193 9.220767 GAAGATTCTTAGGAAAGTGCTTAGAAA 57.779 33.333 0.00 0.00 37.11 2.52
289 1194 9.574516 AAGATTCTTAGGAAAGTGCTTAGAAAA 57.425 29.630 0.00 0.00 37.11 2.29
290 1195 9.574516 AGATTCTTAGGAAAGTGCTTAGAAAAA 57.425 29.630 2.99 0.00 37.11 1.94
297 1202 7.368059 AGGAAAGTGCTTAGAAAAATAAACCG 58.632 34.615 0.00 0.00 0.00 4.44
298 1203 6.584942 GGAAAGTGCTTAGAAAAATAAACCGG 59.415 38.462 0.00 0.00 0.00 5.28
299 1204 6.887626 AAGTGCTTAGAAAAATAAACCGGA 57.112 33.333 9.46 0.00 0.00 5.14
300 1205 7.462571 AAGTGCTTAGAAAAATAAACCGGAT 57.537 32.000 9.46 0.00 0.00 4.18
301 1206 7.462571 AGTGCTTAGAAAAATAAACCGGATT 57.537 32.000 9.46 4.89 0.00 3.01
302 1207 7.892609 AGTGCTTAGAAAAATAAACCGGATTT 58.107 30.769 9.46 7.90 0.00 2.17
303 1208 8.364894 AGTGCTTAGAAAAATAAACCGGATTTT 58.635 29.630 9.46 7.56 37.96 1.82
304 1209 8.984764 GTGCTTAGAAAAATAAACCGGATTTTT 58.015 29.630 19.49 19.49 44.95 1.94
344 1249 8.556213 CTATTTCTATAGGAGAGACGCTTAGT 57.444 38.462 0.00 0.00 34.93 2.24
345 1250 7.826918 ATTTCTATAGGAGAGACGCTTAGTT 57.173 36.000 0.00 0.00 34.93 2.24
346 1251 8.921353 ATTTCTATAGGAGAGACGCTTAGTTA 57.079 34.615 0.00 0.00 34.93 2.24
347 1252 8.743085 TTTCTATAGGAGAGACGCTTAGTTAA 57.257 34.615 0.00 0.00 34.93 2.01
348 1253 7.966246 TCTATAGGAGAGACGCTTAGTTAAG 57.034 40.000 0.00 0.00 36.40 1.85
349 1254 7.041235 TTCTATAGGAGAGACGCTTAGTTAAGC 60.041 40.741 12.72 12.72 44.08 3.09
373 1278 8.738106 AGCGTCTATCCTATACAAATAAGTACC 58.262 37.037 0.00 0.00 0.00 3.34
374 1279 7.695618 GCGTCTATCCTATACAAATAAGTACCG 59.304 40.741 0.00 0.00 0.00 4.02
375 1280 8.180267 CGTCTATCCTATACAAATAAGTACCGG 58.820 40.741 0.00 0.00 0.00 5.28
376 1281 9.018582 GTCTATCCTATACAAATAAGTACCGGT 57.981 37.037 13.98 13.98 0.00 5.28
377 1282 9.017509 TCTATCCTATACAAATAAGTACCGGTG 57.982 37.037 19.93 0.00 0.00 4.94
378 1283 5.846203 TCCTATACAAATAAGTACCGGTGC 58.154 41.667 19.93 17.74 0.00 5.01
379 1284 5.599656 TCCTATACAAATAAGTACCGGTGCT 59.400 40.000 20.57 20.57 0.00 4.40
380 1285 6.098695 TCCTATACAAATAAGTACCGGTGCTT 59.901 38.462 35.22 35.22 38.94 3.91
381 1286 7.287466 TCCTATACAAATAAGTACCGGTGCTTA 59.713 37.037 36.78 36.78 40.91 3.09
382 1287 7.927629 CCTATACAAATAAGTACCGGTGCTTAA 59.072 37.037 37.77 25.92 40.26 1.85
383 1288 9.316730 CTATACAAATAAGTACCGGTGCTTAAA 57.683 33.333 37.77 25.09 40.26 1.52
384 1289 6.490566 ACAAATAAGTACCGGTGCTTAAAG 57.509 37.500 37.77 30.97 40.26 1.85
385 1290 6.232692 ACAAATAAGTACCGGTGCTTAAAGA 58.767 36.000 37.77 24.13 40.26 2.52
386 1291 6.711645 ACAAATAAGTACCGGTGCTTAAAGAA 59.288 34.615 37.77 23.80 40.26 2.52
387 1292 7.229106 ACAAATAAGTACCGGTGCTTAAAGAAA 59.771 33.333 37.77 23.16 40.26 2.52
388 1293 7.933215 AATAAGTACCGGTGCTTAAAGAAAT 57.067 32.000 37.77 24.16 40.26 2.17
389 1294 7.933215 ATAAGTACCGGTGCTTAAAGAAATT 57.067 32.000 37.77 22.70 40.26 1.82
390 1295 5.874895 AGTACCGGTGCTTAAAGAAATTC 57.125 39.130 20.57 0.00 0.00 2.17
391 1296 5.557866 AGTACCGGTGCTTAAAGAAATTCT 58.442 37.500 20.57 0.00 0.00 2.40
392 1297 4.766404 ACCGGTGCTTAAAGAAATTCTG 57.234 40.909 6.12 0.00 0.00 3.02
393 1298 3.506067 ACCGGTGCTTAAAGAAATTCTGG 59.494 43.478 6.12 0.00 0.00 3.86
394 1299 3.506067 CCGGTGCTTAAAGAAATTCTGGT 59.494 43.478 0.00 0.00 0.00 4.00
395 1300 4.022329 CCGGTGCTTAAAGAAATTCTGGTT 60.022 41.667 0.00 0.00 0.00 3.67
396 1301 5.508994 CCGGTGCTTAAAGAAATTCTGGTTT 60.509 40.000 0.00 0.00 0.00 3.27
397 1302 6.294286 CCGGTGCTTAAAGAAATTCTGGTTTA 60.294 38.462 0.00 0.00 0.00 2.01
398 1303 7.312899 CGGTGCTTAAAGAAATTCTGGTTTAT 58.687 34.615 0.00 0.00 0.00 1.40
399 1304 7.812669 CGGTGCTTAAAGAAATTCTGGTTTATT 59.187 33.333 0.00 0.00 0.00 1.40
400 1305 9.489084 GGTGCTTAAAGAAATTCTGGTTTATTT 57.511 29.630 0.00 0.00 36.69 1.40
409 1314 9.520515 AGAAATTCTGGTTTATTTCTCTAAGCA 57.479 29.630 0.00 0.00 43.89 3.91
410 1315 9.561270 GAAATTCTGGTTTATTTCTCTAAGCAC 57.439 33.333 0.00 0.00 37.63 4.40
411 1316 7.631717 ATTCTGGTTTATTTCTCTAAGCACC 57.368 36.000 0.00 0.00 0.00 5.01
412 1317 6.374417 TCTGGTTTATTTCTCTAAGCACCT 57.626 37.500 0.00 0.00 0.00 4.00
413 1318 6.407202 TCTGGTTTATTTCTCTAAGCACCTC 58.593 40.000 0.00 0.00 0.00 3.85
414 1319 6.213600 TCTGGTTTATTTCTCTAAGCACCTCT 59.786 38.462 0.00 0.00 0.00 3.69
415 1320 6.407202 TGGTTTATTTCTCTAAGCACCTCTC 58.593 40.000 0.00 0.00 0.00 3.20
416 1321 5.818336 GGTTTATTTCTCTAAGCACCTCTCC 59.182 44.000 0.00 0.00 0.00 3.71
417 1322 6.352308 GGTTTATTTCTCTAAGCACCTCTCCT 60.352 42.308 0.00 0.00 0.00 3.69
418 1323 7.147707 GGTTTATTTCTCTAAGCACCTCTCCTA 60.148 40.741 0.00 0.00 0.00 2.94
419 1324 7.973048 TTATTTCTCTAAGCACCTCTCCTAA 57.027 36.000 0.00 0.00 0.00 2.69
420 1325 5.923733 TTTCTCTAAGCACCTCTCCTAAG 57.076 43.478 0.00 0.00 0.00 2.18
421 1326 3.292460 TCTCTAAGCACCTCTCCTAAGC 58.708 50.000 0.00 0.00 0.00 3.09
422 1327 3.027412 CTCTAAGCACCTCTCCTAAGCA 58.973 50.000 0.00 0.00 0.00 3.91
423 1328 2.761208 TCTAAGCACCTCTCCTAAGCAC 59.239 50.000 0.00 0.00 0.00 4.40
424 1329 0.615850 AAGCACCTCTCCTAAGCACC 59.384 55.000 0.00 0.00 0.00 5.01
425 1330 0.252467 AGCACCTCTCCTAAGCACCT 60.252 55.000 0.00 0.00 0.00 4.00
426 1331 0.176910 GCACCTCTCCTAAGCACCTC 59.823 60.000 0.00 0.00 0.00 3.85
427 1332 0.827368 CACCTCTCCTAAGCACCTCC 59.173 60.000 0.00 0.00 0.00 4.30
428 1333 0.325765 ACCTCTCCTAAGCACCTCCC 60.326 60.000 0.00 0.00 0.00 4.30
429 1334 0.325671 CCTCTCCTAAGCACCTCCCA 60.326 60.000 0.00 0.00 0.00 4.37
430 1335 1.694048 CCTCTCCTAAGCACCTCCCAT 60.694 57.143 0.00 0.00 0.00 4.00
431 1336 2.122768 CTCTCCTAAGCACCTCCCATT 58.877 52.381 0.00 0.00 0.00 3.16
432 1337 1.839994 TCTCCTAAGCACCTCCCATTG 59.160 52.381 0.00 0.00 0.00 2.82
433 1338 1.561542 CTCCTAAGCACCTCCCATTGT 59.438 52.381 0.00 0.00 0.00 2.71
434 1339 2.771943 CTCCTAAGCACCTCCCATTGTA 59.228 50.000 0.00 0.00 0.00 2.41
435 1340 2.504175 TCCTAAGCACCTCCCATTGTAC 59.496 50.000 0.00 0.00 0.00 2.90
436 1341 2.238646 CCTAAGCACCTCCCATTGTACA 59.761 50.000 0.00 0.00 0.00 2.90
437 1342 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
438 1343 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
439 1344 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
440 1345 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
441 1346 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.000 14.66 0.00 0.00 5.19
442 1347 0.625849 CCTCCCATTGTACAAGGCCT 59.374 55.000 14.66 0.00 0.00 5.19
443 1348 1.843851 CCTCCCATTGTACAAGGCCTA 59.156 52.381 14.66 1.57 0.00 3.93
444 1349 2.241176 CCTCCCATTGTACAAGGCCTAA 59.759 50.000 14.66 0.00 0.00 2.69
445 1350 3.279434 CTCCCATTGTACAAGGCCTAAC 58.721 50.000 14.66 5.69 0.00 2.34
446 1351 2.645297 TCCCATTGTACAAGGCCTAACA 59.355 45.455 14.66 8.72 0.00 2.41
447 1352 3.016736 CCCATTGTACAAGGCCTAACAG 58.983 50.000 14.66 0.00 0.00 3.16
448 1353 3.016736 CCATTGTACAAGGCCTAACAGG 58.983 50.000 14.66 6.22 38.80 4.00
462 1367 3.196254 CCTAACAGGCAGCAATGGAAAAT 59.804 43.478 0.00 0.00 0.00 1.82
497 1408 1.059913 CCTTTCGATGGCCCCTCTAT 58.940 55.000 0.00 0.00 0.00 1.98
593 1542 1.411246 ACTTACGTGTGTGGCTCTTGA 59.589 47.619 0.00 0.00 0.00 3.02
1298 2325 3.487120 AATTATACTGCCTTCGTCCCC 57.513 47.619 0.00 0.00 0.00 4.81
2935 4135 5.883503 TTGATGTTCCCGTAATAACAACC 57.116 39.130 0.00 0.00 38.95 3.77
3830 5090 2.202987 GTCATCTCCTGCCCTGCG 60.203 66.667 0.00 0.00 0.00 5.18
3889 5149 1.140816 GTCAGAACACACCGAGAAGC 58.859 55.000 0.00 0.00 0.00 3.86
3990 5252 7.254522 GCATTCAAGTTGACATTGACAACATTT 60.255 33.333 25.99 14.42 46.58 2.32
4200 5462 1.689233 ACCTAGCTTCATCGGGGCA 60.689 57.895 0.00 0.00 0.00 5.36
4315 5577 6.681120 GCTCTTTTGAATAATGCATGCTACCA 60.681 38.462 20.33 0.00 0.00 3.25
4319 5581 4.873817 TGAATAATGCATGCTACCATTGC 58.126 39.130 20.33 5.33 33.93 3.56
4410 5674 4.576053 TGATGCACCATTAGCTAATGTGAC 59.424 41.667 33.74 24.87 41.04 3.67
4497 5761 3.375782 TCTCACTCATATGCATGTCCG 57.624 47.619 10.16 0.00 33.57 4.79
4525 5789 7.276438 CAGTATTCAATCTTCGTCTGTGAATCA 59.724 37.037 0.75 0.00 39.17 2.57
4583 5847 5.163581 GCGAATGTGTTCCTACTTCCTAGTA 60.164 44.000 0.00 0.00 35.78 1.82
4643 5978 1.081906 GCAAGGTCATGCACGTGTG 60.082 57.895 18.38 8.70 45.70 3.82
4753 6088 1.510480 GGCATCAGCTGGCGATTACC 61.510 60.000 15.13 2.59 41.02 2.85
5016 6376 2.874849 ACAACGTCTTTTGGCAAACAG 58.125 42.857 13.10 12.93 0.00 3.16
5114 6480 2.513666 CTGGATAGCGCCGCCAAA 60.514 61.111 4.98 0.00 0.00 3.28
5168 6534 1.807142 GAGCACAGTAGGAAAGGCAAC 59.193 52.381 0.00 0.00 0.00 4.17
5232 6601 2.031919 AAGGCGCAACCATCGACA 59.968 55.556 10.83 0.00 43.14 4.35
5236 6605 1.574428 GCGCAACCATCGACAACTT 59.426 52.632 0.30 0.00 0.00 2.66
5254 6623 1.203994 CTTCGACCACAACCGGAGTAT 59.796 52.381 9.46 0.00 0.00 2.12
5259 6628 2.756760 GACCACAACCGGAGTATGACTA 59.243 50.000 9.46 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.069906 GTGTGTAAGTGGCGCTTTCTG 60.070 52.381 19.62 0.00 38.57 3.02
233 1138 0.905357 AGGCCTTAAGCTCACGACAT 59.095 50.000 0.00 0.00 43.05 3.06
248 1153 7.391833 CCTAAGAATCTTCCATTGTATAAGGCC 59.608 40.741 0.00 0.00 0.00 5.19
249 1154 8.157476 TCCTAAGAATCTTCCATTGTATAAGGC 58.843 37.037 0.00 0.00 0.00 4.35
254 1159 9.401058 CACTTTCCTAAGAATCTTCCATTGTAT 57.599 33.333 0.00 0.00 35.30 2.29
255 1160 7.336931 GCACTTTCCTAAGAATCTTCCATTGTA 59.663 37.037 0.00 0.00 35.30 2.41
257 1162 6.376581 AGCACTTTCCTAAGAATCTTCCATTG 59.623 38.462 0.00 0.00 35.30 2.82
258 1163 6.488715 AGCACTTTCCTAAGAATCTTCCATT 58.511 36.000 0.00 0.00 35.30 3.16
259 1164 6.072199 AGCACTTTCCTAAGAATCTTCCAT 57.928 37.500 0.00 0.00 35.30 3.41
260 1165 5.505181 AGCACTTTCCTAAGAATCTTCCA 57.495 39.130 0.00 0.00 35.30 3.53
261 1166 7.331791 TCTAAGCACTTTCCTAAGAATCTTCC 58.668 38.462 0.00 0.00 35.30 3.46
262 1167 8.779354 TTCTAAGCACTTTCCTAAGAATCTTC 57.221 34.615 0.00 0.00 35.30 2.87
263 1168 9.574516 TTTTCTAAGCACTTTCCTAAGAATCTT 57.425 29.630 0.00 0.00 35.30 2.40
264 1169 9.574516 TTTTTCTAAGCACTTTCCTAAGAATCT 57.425 29.630 0.00 0.00 35.30 2.40
271 1176 8.508875 CGGTTTATTTTTCTAAGCACTTTCCTA 58.491 33.333 0.00 0.00 0.00 2.94
272 1177 7.368059 CGGTTTATTTTTCTAAGCACTTTCCT 58.632 34.615 0.00 0.00 0.00 3.36
273 1178 6.584942 CCGGTTTATTTTTCTAAGCACTTTCC 59.415 38.462 0.00 0.00 0.00 3.13
274 1179 7.364970 TCCGGTTTATTTTTCTAAGCACTTTC 58.635 34.615 0.00 0.00 0.00 2.62
275 1180 7.279750 TCCGGTTTATTTTTCTAAGCACTTT 57.720 32.000 0.00 0.00 0.00 2.66
276 1181 6.887626 TCCGGTTTATTTTTCTAAGCACTT 57.112 33.333 0.00 0.00 0.00 3.16
277 1182 7.462571 AATCCGGTTTATTTTTCTAAGCACT 57.537 32.000 0.00 0.00 0.00 4.40
278 1183 8.528917 AAAATCCGGTTTATTTTTCTAAGCAC 57.471 30.769 0.00 0.00 33.78 4.40
310 1215 3.926616 CCTATAGAAATAGGCACCGGTG 58.073 50.000 30.66 30.66 46.45 4.94
319 1224 8.556213 ACTAAGCGTCTCTCCTATAGAAATAG 57.444 38.462 0.00 0.00 35.73 1.73
320 1225 8.921353 AACTAAGCGTCTCTCCTATAGAAATA 57.079 34.615 0.00 0.00 32.46 1.40
321 1226 7.826918 AACTAAGCGTCTCTCCTATAGAAAT 57.173 36.000 0.00 0.00 32.46 2.17
322 1227 8.743085 TTAACTAAGCGTCTCTCCTATAGAAA 57.257 34.615 0.00 0.00 32.46 2.52
323 1228 8.380743 CTTAACTAAGCGTCTCTCCTATAGAA 57.619 38.462 0.00 0.00 32.46 2.10
324 1229 7.966246 CTTAACTAAGCGTCTCTCCTATAGA 57.034 40.000 0.00 0.00 0.00 1.98
347 1252 8.738106 GGTACTTATTTGTATAGGATAGACGCT 58.262 37.037 0.00 0.00 35.04 5.07
348 1253 7.695618 CGGTACTTATTTGTATAGGATAGACGC 59.304 40.741 0.00 0.00 35.04 5.19
349 1254 8.180267 CCGGTACTTATTTGTATAGGATAGACG 58.820 40.741 0.00 0.00 35.04 4.18
350 1255 9.018582 ACCGGTACTTATTTGTATAGGATAGAC 57.981 37.037 4.49 0.00 32.35 2.59
351 1256 9.017509 CACCGGTACTTATTTGTATAGGATAGA 57.982 37.037 6.87 0.00 0.00 1.98
352 1257 7.758528 GCACCGGTACTTATTTGTATAGGATAG 59.241 40.741 6.87 0.00 0.00 2.08
353 1258 7.452501 AGCACCGGTACTTATTTGTATAGGATA 59.547 37.037 6.87 0.00 0.00 2.59
354 1259 6.269307 AGCACCGGTACTTATTTGTATAGGAT 59.731 38.462 6.87 0.00 0.00 3.24
355 1260 5.599656 AGCACCGGTACTTATTTGTATAGGA 59.400 40.000 6.87 0.00 0.00 2.94
356 1261 5.850614 AGCACCGGTACTTATTTGTATAGG 58.149 41.667 6.87 0.00 0.00 2.57
357 1262 8.876275 TTAAGCACCGGTACTTATTTGTATAG 57.124 34.615 24.60 1.41 0.00 1.31
358 1263 9.316730 CTTTAAGCACCGGTACTTATTTGTATA 57.683 33.333 24.60 8.19 0.00 1.47
359 1264 8.042515 TCTTTAAGCACCGGTACTTATTTGTAT 58.957 33.333 24.60 2.61 0.00 2.29
360 1265 7.385267 TCTTTAAGCACCGGTACTTATTTGTA 58.615 34.615 24.60 9.51 0.00 2.41
361 1266 6.232692 TCTTTAAGCACCGGTACTTATTTGT 58.767 36.000 24.60 4.04 0.00 2.83
362 1267 6.730960 TCTTTAAGCACCGGTACTTATTTG 57.269 37.500 24.60 17.49 0.00 2.32
363 1268 7.748691 TTTCTTTAAGCACCGGTACTTATTT 57.251 32.000 24.60 5.12 0.00 1.40
364 1269 7.933215 ATTTCTTTAAGCACCGGTACTTATT 57.067 32.000 24.60 5.48 0.00 1.40
365 1270 7.827729 AGAATTTCTTTAAGCACCGGTACTTAT 59.172 33.333 24.60 10.54 0.00 1.73
366 1271 7.118680 CAGAATTTCTTTAAGCACCGGTACTTA 59.881 37.037 21.15 21.15 0.00 2.24
367 1272 6.002082 AGAATTTCTTTAAGCACCGGTACTT 58.998 36.000 23.25 23.25 0.00 2.24
368 1273 5.411669 CAGAATTTCTTTAAGCACCGGTACT 59.588 40.000 6.87 3.13 0.00 2.73
369 1274 5.391629 CCAGAATTTCTTTAAGCACCGGTAC 60.392 44.000 6.87 0.00 0.00 3.34
370 1275 4.698304 CCAGAATTTCTTTAAGCACCGGTA 59.302 41.667 6.87 0.00 0.00 4.02
371 1276 3.506067 CCAGAATTTCTTTAAGCACCGGT 59.494 43.478 0.00 0.00 0.00 5.28
372 1277 3.506067 ACCAGAATTTCTTTAAGCACCGG 59.494 43.478 0.00 0.00 0.00 5.28
373 1278 4.766404 ACCAGAATTTCTTTAAGCACCG 57.234 40.909 0.00 0.00 0.00 4.94
374 1279 9.489084 AAATAAACCAGAATTTCTTTAAGCACC 57.511 29.630 0.00 0.00 0.00 5.01
384 1289 9.561270 GTGCTTAGAGAAATAAACCAGAATTTC 57.439 33.333 0.00 0.00 40.72 2.17
385 1290 8.523658 GGTGCTTAGAGAAATAAACCAGAATTT 58.476 33.333 0.00 0.00 0.00 1.82
386 1291 7.890655 AGGTGCTTAGAGAAATAAACCAGAATT 59.109 33.333 0.00 0.00 0.00 2.17
387 1292 7.406104 AGGTGCTTAGAGAAATAAACCAGAAT 58.594 34.615 0.00 0.00 0.00 2.40
388 1293 6.779860 AGGTGCTTAGAGAAATAAACCAGAA 58.220 36.000 0.00 0.00 0.00 3.02
389 1294 6.213600 AGAGGTGCTTAGAGAAATAAACCAGA 59.786 38.462 0.00 0.00 0.00 3.86
390 1295 6.410540 AGAGGTGCTTAGAGAAATAAACCAG 58.589 40.000 0.00 0.00 0.00 4.00
391 1296 6.374417 AGAGGTGCTTAGAGAAATAAACCA 57.626 37.500 0.00 0.00 0.00 3.67
392 1297 5.818336 GGAGAGGTGCTTAGAGAAATAAACC 59.182 44.000 0.00 0.00 0.00 3.27
393 1298 6.645306 AGGAGAGGTGCTTAGAGAAATAAAC 58.355 40.000 0.00 0.00 0.00 2.01
394 1299 6.875972 AGGAGAGGTGCTTAGAGAAATAAA 57.124 37.500 0.00 0.00 0.00 1.40
395 1300 7.418025 GCTTAGGAGAGGTGCTTAGAGAAATAA 60.418 40.741 0.00 0.00 0.00 1.40
396 1301 6.041069 GCTTAGGAGAGGTGCTTAGAGAAATA 59.959 42.308 0.00 0.00 0.00 1.40
397 1302 5.163353 GCTTAGGAGAGGTGCTTAGAGAAAT 60.163 44.000 0.00 0.00 0.00 2.17
398 1303 4.160626 GCTTAGGAGAGGTGCTTAGAGAAA 59.839 45.833 0.00 0.00 0.00 2.52
399 1304 3.702045 GCTTAGGAGAGGTGCTTAGAGAA 59.298 47.826 0.00 0.00 0.00 2.87
400 1305 3.292460 GCTTAGGAGAGGTGCTTAGAGA 58.708 50.000 0.00 0.00 0.00 3.10
401 1306 3.027412 TGCTTAGGAGAGGTGCTTAGAG 58.973 50.000 0.00 0.00 0.00 2.43
402 1307 2.761208 GTGCTTAGGAGAGGTGCTTAGA 59.239 50.000 0.00 0.00 0.00 2.10
403 1308 2.159028 GGTGCTTAGGAGAGGTGCTTAG 60.159 54.545 0.00 0.00 0.00 2.18
404 1309 1.831736 GGTGCTTAGGAGAGGTGCTTA 59.168 52.381 0.00 0.00 0.00 3.09
405 1310 0.615850 GGTGCTTAGGAGAGGTGCTT 59.384 55.000 0.00 0.00 0.00 3.91
406 1311 0.252467 AGGTGCTTAGGAGAGGTGCT 60.252 55.000 0.00 0.00 0.00 4.40
407 1312 0.176910 GAGGTGCTTAGGAGAGGTGC 59.823 60.000 0.00 0.00 0.00 5.01
408 1313 0.827368 GGAGGTGCTTAGGAGAGGTG 59.173 60.000 0.00 0.00 0.00 4.00
409 1314 0.325765 GGGAGGTGCTTAGGAGAGGT 60.326 60.000 0.00 0.00 0.00 3.85
410 1315 0.325671 TGGGAGGTGCTTAGGAGAGG 60.326 60.000 0.00 0.00 0.00 3.69
411 1316 1.799933 ATGGGAGGTGCTTAGGAGAG 58.200 55.000 0.00 0.00 0.00 3.20
412 1317 1.839994 CAATGGGAGGTGCTTAGGAGA 59.160 52.381 0.00 0.00 0.00 3.71
413 1318 1.561542 ACAATGGGAGGTGCTTAGGAG 59.438 52.381 0.00 0.00 0.00 3.69
414 1319 1.668826 ACAATGGGAGGTGCTTAGGA 58.331 50.000 0.00 0.00 0.00 2.94
415 1320 2.238646 TGTACAATGGGAGGTGCTTAGG 59.761 50.000 0.00 0.00 0.00 2.69
416 1321 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
417 1322 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
418 1323 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
419 1324 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
420 1325 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
421 1326 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
422 1327 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
423 1328 0.625849 AGGCCTTGTACAATGGGAGG 59.374 55.000 16.08 11.34 0.00 4.30
424 1329 3.279434 GTTAGGCCTTGTACAATGGGAG 58.721 50.000 12.58 1.65 0.00 4.30
425 1330 2.645297 TGTTAGGCCTTGTACAATGGGA 59.355 45.455 12.58 0.00 0.00 4.37
426 1331 3.016736 CTGTTAGGCCTTGTACAATGGG 58.983 50.000 12.58 14.91 0.00 4.00
427 1332 3.016736 CCTGTTAGGCCTTGTACAATGG 58.983 50.000 12.58 13.26 0.00 3.16
440 1345 1.838112 TTCCATTGCTGCCTGTTAGG 58.162 50.000 0.00 0.00 38.80 2.69
441 1346 3.940209 TTTTCCATTGCTGCCTGTTAG 57.060 42.857 0.00 0.00 0.00 2.34
442 1347 4.563168 CCAATTTTCCATTGCTGCCTGTTA 60.563 41.667 0.00 0.00 0.00 2.41
443 1348 3.404899 CAATTTTCCATTGCTGCCTGTT 58.595 40.909 0.00 0.00 0.00 3.16
444 1349 2.289819 CCAATTTTCCATTGCTGCCTGT 60.290 45.455 0.00 0.00 0.00 4.00
445 1350 2.289819 ACCAATTTTCCATTGCTGCCTG 60.290 45.455 0.00 0.00 0.00 4.85
446 1351 1.980036 ACCAATTTTCCATTGCTGCCT 59.020 42.857 0.00 0.00 0.00 4.75
447 1352 2.289569 TGACCAATTTTCCATTGCTGCC 60.290 45.455 0.00 0.00 0.00 4.85
448 1353 3.042871 TGACCAATTTTCCATTGCTGC 57.957 42.857 0.00 0.00 0.00 5.25
449 1354 4.327898 CGATTGACCAATTTTCCATTGCTG 59.672 41.667 0.00 0.00 0.00 4.41
450 1355 4.497300 CGATTGACCAATTTTCCATTGCT 58.503 39.130 0.00 0.00 0.00 3.91
451 1356 3.618150 CCGATTGACCAATTTTCCATTGC 59.382 43.478 0.00 0.00 0.00 3.56
497 1408 1.064611 TGGTCAAAAGGGTCCGTTTGA 60.065 47.619 21.22 21.22 46.35 2.69
593 1542 1.680338 GTTTCTCCCTGCACAACTGT 58.320 50.000 0.00 0.00 0.00 3.55
736 1696 4.982295 GCGCTAATCAGGTTTTGTTTTTCT 59.018 37.500 0.00 0.00 0.00 2.52
1196 2209 6.408107 TGCGGTCTATATATGTTTGTACCA 57.592 37.500 0.00 0.00 0.00 3.25
1298 2325 8.233868 TGACTCGGTTTATACAACATGAATTTG 58.766 33.333 0.00 0.00 0.00 2.32
1337 2364 6.777580 ACTGTGGTTAAAAGATTCTTGTGGAT 59.222 34.615 0.00 0.00 0.00 3.41
1885 2929 9.431887 CTAAACTAGTATTTTACTGACCTGCAA 57.568 33.333 0.00 0.00 39.81 4.08
1886 2930 8.591072 ACTAAACTAGTATTTTACTGACCTGCA 58.409 33.333 0.00 0.00 39.81 4.41
2035 3085 1.693062 TGCTACACAAGGGACCGTTAA 59.307 47.619 0.00 0.00 0.00 2.01
3830 5090 2.045524 TCCCAGAGCCTCATGATCTTC 58.954 52.381 0.00 0.00 0.00 2.87
3990 5252 7.977293 CACATAATTTCTTTTCAGATCATGCCA 59.023 33.333 0.00 0.00 0.00 4.92
4200 5462 4.015084 CCATCCTTGCAAAGTTGAGAGAT 58.985 43.478 0.00 0.00 44.25 2.75
4410 5674 2.688507 AGTATCGTTTGTGGAGCAGTG 58.311 47.619 0.00 0.00 0.00 3.66
4497 5761 4.033358 CACAGACGAAGATTGAATACTGCC 59.967 45.833 0.00 0.00 0.00 4.85
4525 5789 5.870978 GCTATGCACAGGACAAATTTTGAAT 59.129 36.000 15.81 0.00 0.00 2.57
4643 5978 3.377439 CACATGCATCACATACATTGCC 58.623 45.455 0.00 0.00 36.64 4.52
4747 6082 4.272748 GCTTGAAGGATGTAACGGGTAATC 59.727 45.833 0.00 0.00 0.00 1.75
4753 6088 3.666902 CGTTTGCTTGAAGGATGTAACGG 60.667 47.826 12.36 0.00 0.00 4.44
4927 6286 8.859236 TCTTCTTCTCATGTTCAATGAATTCT 57.141 30.769 7.05 0.00 0.00 2.40
4942 6301 8.108999 TCATAAATTGGACCAATCTTCTTCTCA 58.891 33.333 20.06 0.00 32.43 3.27
4988 6348 4.142359 TGCCAAAAGACGTTGTTTGTATGT 60.142 37.500 18.16 0.00 33.71 2.29
5016 6376 1.157257 TCGTGTGGATGTGTGTGTGC 61.157 55.000 0.00 0.00 0.00 4.57
5113 6479 6.155393 CCCTTGATCTAGTTTAGACCAGACTT 59.845 42.308 3.47 0.00 37.69 3.01
5114 6480 5.659079 CCCTTGATCTAGTTTAGACCAGACT 59.341 44.000 3.47 0.00 37.69 3.24
5168 6534 0.461548 TCGATGTAGCTGCTCCCAAG 59.538 55.000 4.91 3.88 0.00 3.61
5232 6601 0.249741 CTCCGGTTGTGGTCGAAGTT 60.250 55.000 0.00 0.00 0.00 2.66
5236 6605 0.528924 CATACTCCGGTTGTGGTCGA 59.471 55.000 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.