Multiple sequence alignment - TraesCS6A01G067400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G067400 chr6A 100.000 1707 0 0 1 1707 35930295 35928589 0.000000e+00 3153.0
1 TraesCS6A01G067400 chr6A 100.000 339 0 0 1860 2198 35928436 35928098 5.150000e-176 627.0
2 TraesCS6A01G067400 chr6A 87.192 203 23 2 1001 1200 48764578 48764780 6.100000e-56 228.0
3 TraesCS6A01G067400 chrUn 91.875 1120 53 13 547 1647 100705214 100706314 0.000000e+00 1530.0
4 TraesCS6A01G067400 chrUn 93.121 596 30 2 969 1564 100575530 100576114 0.000000e+00 863.0
5 TraesCS6A01G067400 chrUn 91.216 296 7 2 525 809 100549767 100550054 3.420000e-103 385.0
6 TraesCS6A01G067400 chrUn 87.755 245 28 2 1 244 100549517 100549760 3.570000e-73 285.0
7 TraesCS6A01G067400 chrUn 87.317 205 21 4 802 1002 100575323 100575526 1.700000e-56 230.0
8 TraesCS6A01G067400 chrUn 92.199 141 10 1 1860 1999 100590557 100590697 4.790000e-47 198.0
9 TraesCS6A01G067400 chr6B 92.664 886 39 7 617 1486 66742263 66741388 0.000000e+00 1253.0
10 TraesCS6A01G067400 chr6B 87.984 258 19 5 1860 2117 66740701 66740456 5.930000e-76 294.0
11 TraesCS6A01G067400 chr6B 92.965 199 13 1 1470 1667 66741087 66740889 2.760000e-74 289.0
12 TraesCS6A01G067400 chr6B 86.070 201 25 2 1001 1198 87541231 87541431 1.710000e-51 213.0
13 TraesCS6A01G067400 chr2B 88.346 266 22 5 270 529 160041778 160041516 5.890000e-81 311.0
14 TraesCS6A01G067400 chr7B 87.687 268 24 2 265 526 139049481 139049745 9.860000e-79 303.0
15 TraesCS6A01G067400 chr5D 87.687 268 23 4 265 526 162578163 162578426 9.860000e-79 303.0
16 TraesCS6A01G067400 chr5D 87.313 268 25 4 265 526 272406333 272406069 4.590000e-77 298.0
17 TraesCS6A01G067400 chr2D 87.687 268 24 4 265 526 186284303 186284567 9.860000e-79 303.0
18 TraesCS6A01G067400 chr6D 86.691 278 29 3 252 526 37049450 37049178 3.550000e-78 302.0
19 TraesCS6A01G067400 chr6D 86.341 205 25 2 999 1200 37443147 37443351 1.020000e-53 220.0
20 TraesCS6A01G067400 chr3D 87.407 270 25 2 265 528 193949230 193949496 3.550000e-78 302.0
21 TraesCS6A01G067400 chr3D 78.667 150 29 2 1 150 87483783 87483637 1.800000e-16 97.1
22 TraesCS6A01G067400 chr7D 87.313 268 25 5 265 526 228407188 228406924 4.590000e-77 298.0
23 TraesCS6A01G067400 chr7D 87.313 268 25 4 265 526 257461885 257461621 4.590000e-77 298.0
24 TraesCS6A01G067400 chr4B 79.082 196 39 2 3 197 29929832 29930026 1.370000e-27 134.0
25 TraesCS6A01G067400 chr4B 78.392 199 41 2 3 200 29933107 29933304 6.370000e-26 128.0
26 TraesCS6A01G067400 chr5A 77.723 202 39 5 1 201 411835904 411836100 3.830000e-23 119.0
27 TraesCS6A01G067400 chr7A 82.301 113 20 0 1 113 27883448 27883560 4.990000e-17 99.0
28 TraesCS6A01G067400 chr7A 94.118 34 2 0 1166 1199 121913192 121913225 4.000000e-03 52.8
29 TraesCS6A01G067400 chr1A 78.571 154 30 3 4 156 304615921 304615770 4.990000e-17 99.0
30 TraesCS6A01G067400 chr1A 77.922 154 31 3 4 156 304795385 304795234 2.320000e-15 93.5
31 TraesCS6A01G067400 chr2A 80.000 115 23 0 38 152 55066314 55066428 3.890000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G067400 chr6A 35928098 35930295 2197 True 1890.0 3153 100.000000 1 2198 2 chr6A.!!$R1 2197
1 TraesCS6A01G067400 chrUn 100705214 100706314 1100 False 1530.0 1530 91.875000 547 1647 1 chrUn.!!$F2 1100
2 TraesCS6A01G067400 chrUn 100575323 100576114 791 False 546.5 863 90.219000 802 1564 2 chrUn.!!$F4 762
3 TraesCS6A01G067400 chrUn 100549517 100550054 537 False 335.0 385 89.485500 1 809 2 chrUn.!!$F3 808
4 TraesCS6A01G067400 chr6B 66740456 66742263 1807 True 612.0 1253 91.204333 617 2117 3 chr6B.!!$R1 1500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 469 0.112025 TGGTGTGCCACATCATCCAA 59.888 50.0 6.71 0.0 40.46 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2161 2714 0.109723 GACAACCCAAGGTACTGGCA 59.89 55.0 0.0 0.0 40.86 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.581213 TTTTAAGATTGAAGAAGTTGCCTCA 57.419 32.000 0.00 0.00 0.00 3.86
39 40 1.689273 AGAAGTTGCCTCAGACGTCTT 59.311 47.619 17.26 0.00 31.99 3.01
41 42 1.333177 AGTTGCCTCAGACGTCTTCT 58.667 50.000 17.26 3.24 33.33 2.85
43 44 2.891580 AGTTGCCTCAGACGTCTTCTTA 59.108 45.455 17.26 0.75 28.96 2.10
56 57 3.119136 CGTCTTCTTAGTCCACGAAAACG 59.881 47.826 0.00 0.00 32.08 3.60
64 65 0.316204 TCCACGAAAACGTCTCCTCC 59.684 55.000 0.00 0.00 0.00 4.30
65 66 0.317479 CCACGAAAACGTCTCCTCCT 59.683 55.000 0.00 0.00 0.00 3.69
76 77 3.946558 ACGTCTCCTCCTACTGAATGTAC 59.053 47.826 0.00 0.00 0.00 2.90
104 105 4.307443 GGAAGGCCCGAAATAAATTCAG 57.693 45.455 0.00 0.00 37.96 3.02
107 108 5.105513 GGAAGGCCCGAAATAAATTCAGAAA 60.106 40.000 0.00 0.00 37.96 2.52
110 111 6.946340 AGGCCCGAAATAAATTCAGAAAAAT 58.054 32.000 0.00 0.00 37.96 1.82
111 112 6.818142 AGGCCCGAAATAAATTCAGAAAAATG 59.182 34.615 0.00 0.00 37.96 2.32
113 114 6.695245 CCCGAAATAAATTCAGAAAAATGCG 58.305 36.000 0.00 0.00 37.96 4.73
121 122 2.302260 TCAGAAAAATGCGACCACCAA 58.698 42.857 0.00 0.00 0.00 3.67
125 126 2.437200 AAAATGCGACCACCAATGTG 57.563 45.000 0.00 0.00 42.39 3.21
130 131 1.070914 TGCGACCACCAATGTGAAGTA 59.929 47.619 0.00 0.00 45.76 2.24
136 137 5.234329 CGACCACCAATGTGAAGTATATGAC 59.766 44.000 0.00 0.00 45.76 3.06
157 158 1.264749 TGAAGCGTGATGGGCTAGGT 61.265 55.000 0.00 0.00 40.53 3.08
166 168 4.413760 GTGATGGGCTAGGTATACCACTA 58.586 47.826 23.87 7.62 38.89 2.74
172 174 4.710865 GGGCTAGGTATACCACTATCCTTC 59.289 50.000 23.87 3.59 38.89 3.46
177 179 8.905850 GCTAGGTATACCACTATCCTTCTAATC 58.094 40.741 23.87 0.00 38.89 1.75
198 200 5.107109 TCATTCAATCACAAGTTGGTTCG 57.893 39.130 7.96 0.00 0.00 3.95
202 204 0.586319 ATCACAAGTTGGTTCGCACG 59.414 50.000 7.96 0.00 0.00 5.34
209 211 2.589157 TTGGTTCGCACGGGGATCT 61.589 57.895 0.00 0.00 0.00 2.75
246 248 9.454585 CATGTTTTGGATTTGTACTATATGCTG 57.545 33.333 0.00 0.00 0.00 4.41
249 251 7.880160 TTTGGATTTGTACTATATGCTGCTT 57.120 32.000 0.00 0.00 0.00 3.91
250 252 8.972458 TTTGGATTTGTACTATATGCTGCTTA 57.028 30.769 0.00 0.00 0.00 3.09
251 253 8.607441 TTGGATTTGTACTATATGCTGCTTAG 57.393 34.615 0.00 2.52 0.00 2.18
252 254 7.161404 TGGATTTGTACTATATGCTGCTTAGG 58.839 38.462 0.00 0.00 0.00 2.69
253 255 6.092807 GGATTTGTACTATATGCTGCTTAGGC 59.907 42.308 0.00 0.00 39.26 3.93
254 256 5.808366 TTGTACTATATGCTGCTTAGGCT 57.192 39.130 0.00 0.00 39.59 4.58
255 257 6.911250 TTGTACTATATGCTGCTTAGGCTA 57.089 37.500 0.00 0.00 39.59 3.93
256 258 6.516739 TGTACTATATGCTGCTTAGGCTAG 57.483 41.667 0.00 1.21 39.59 3.42
257 259 6.010850 TGTACTATATGCTGCTTAGGCTAGT 58.989 40.000 0.00 6.84 39.59 2.57
258 260 5.652994 ACTATATGCTGCTTAGGCTAGTC 57.347 43.478 0.00 0.00 39.59 2.59
259 261 3.584406 ATATGCTGCTTAGGCTAGTCG 57.416 47.619 0.00 0.00 39.59 4.18
260 262 1.115467 ATGCTGCTTAGGCTAGTCGT 58.885 50.000 0.00 0.00 39.59 4.34
261 263 1.758936 TGCTGCTTAGGCTAGTCGTA 58.241 50.000 0.00 0.00 39.59 3.43
262 264 2.097036 TGCTGCTTAGGCTAGTCGTAA 58.903 47.619 0.00 0.00 39.59 3.18
263 265 2.693591 TGCTGCTTAGGCTAGTCGTAAT 59.306 45.455 0.00 0.00 39.59 1.89
264 266 3.132289 TGCTGCTTAGGCTAGTCGTAATT 59.868 43.478 0.00 0.00 39.59 1.40
265 267 4.340097 TGCTGCTTAGGCTAGTCGTAATTA 59.660 41.667 0.00 0.00 39.59 1.40
266 268 5.163488 TGCTGCTTAGGCTAGTCGTAATTAA 60.163 40.000 0.00 0.00 39.59 1.40
267 269 5.175308 GCTGCTTAGGCTAGTCGTAATTAAC 59.825 44.000 0.00 0.00 39.59 2.01
268 270 5.276270 TGCTTAGGCTAGTCGTAATTAACG 58.724 41.667 0.00 0.00 45.33 3.18
269 271 4.678742 GCTTAGGCTAGTCGTAATTAACGG 59.321 45.833 0.00 0.00 42.74 4.44
270 272 5.734503 GCTTAGGCTAGTCGTAATTAACGGT 60.735 44.000 0.00 0.00 42.74 4.83
271 273 7.702704 GCTTAGGCTAGTCGTAATTAACGGTG 61.703 46.154 0.00 0.00 42.74 4.94
272 274 9.740134 GCTTAGGCTAGTCGTAATTAACGGTGA 62.740 44.444 0.00 0.00 42.74 4.02
329 331 7.462571 TGATACTACGTCTATAATGCATGGT 57.537 36.000 0.00 0.00 0.00 3.55
330 332 8.570068 TGATACTACGTCTATAATGCATGGTA 57.430 34.615 0.00 0.00 0.00 3.25
331 333 9.185680 TGATACTACGTCTATAATGCATGGTAT 57.814 33.333 0.00 0.00 0.00 2.73
332 334 9.666626 GATACTACGTCTATAATGCATGGTATC 57.333 37.037 0.00 0.00 0.00 2.24
333 335 7.462571 ACTACGTCTATAATGCATGGTATCA 57.537 36.000 0.00 0.00 0.00 2.15
334 336 8.067751 ACTACGTCTATAATGCATGGTATCAT 57.932 34.615 0.00 0.00 0.00 2.45
335 337 9.185680 ACTACGTCTATAATGCATGGTATCATA 57.814 33.333 0.00 0.00 31.33 2.15
337 339 8.932945 ACGTCTATAATGCATGGTATCATAAG 57.067 34.615 0.00 0.00 31.33 1.73
338 340 8.531982 ACGTCTATAATGCATGGTATCATAAGT 58.468 33.333 0.00 0.00 31.33 2.24
339 341 9.371136 CGTCTATAATGCATGGTATCATAAGTT 57.629 33.333 0.00 0.00 31.33 2.66
371 373 8.925161 TTAGGTTGCTTTATTAATTGTCATGC 57.075 30.769 0.00 0.00 0.00 4.06
372 374 6.934056 AGGTTGCTTTATTAATTGTCATGCA 58.066 32.000 0.00 0.00 0.00 3.96
373 375 7.558604 AGGTTGCTTTATTAATTGTCATGCAT 58.441 30.769 0.00 0.00 0.00 3.96
374 376 7.493320 AGGTTGCTTTATTAATTGTCATGCATG 59.507 33.333 21.07 21.07 0.00 4.06
375 377 7.254522 GGTTGCTTTATTAATTGTCATGCATGG 60.255 37.037 25.97 8.24 0.00 3.66
376 378 5.754406 TGCTTTATTAATTGTCATGCATGGC 59.246 36.000 24.40 24.40 0.00 4.40
377 379 5.754406 GCTTTATTAATTGTCATGCATGGCA 59.246 36.000 29.45 29.45 44.86 4.92
378 380 6.292488 GCTTTATTAATTGTCATGCATGGCAC 60.292 38.462 32.61 20.88 42.90 5.01
379 381 4.739587 ATTAATTGTCATGCATGGCACA 57.260 36.364 32.61 23.20 42.90 4.57
414 416 9.516091 CAACATTAAATATGATACGATGTCACG 57.484 33.333 0.00 0.00 39.31 4.35
415 417 9.471084 AACATTAAATATGATACGATGTCACGA 57.529 29.630 0.00 0.00 37.03 4.35
416 418 9.639601 ACATTAAATATGATACGATGTCACGAT 57.360 29.630 0.00 0.00 37.03 3.73
424 426 6.782150 TGATACGATGTCACGATATGATACC 58.218 40.000 0.00 0.00 40.28 2.73
425 427 6.373216 TGATACGATGTCACGATATGATACCA 59.627 38.462 0.00 0.00 40.28 3.25
426 428 4.795268 ACGATGTCACGATATGATACCAC 58.205 43.478 0.00 0.00 40.28 4.16
427 429 4.277423 ACGATGTCACGATATGATACCACA 59.723 41.667 0.00 0.00 40.28 4.17
428 430 5.048013 ACGATGTCACGATATGATACCACAT 60.048 40.000 0.00 0.00 40.28 3.21
429 431 5.513141 CGATGTCACGATATGATACCACATC 59.487 44.000 0.00 0.00 40.28 3.06
430 432 5.134202 TGTCACGATATGATACCACATCC 57.866 43.478 0.00 0.00 40.28 3.51
431 433 4.832823 TGTCACGATATGATACCACATCCT 59.167 41.667 0.00 0.00 40.28 3.24
432 434 5.048013 TGTCACGATATGATACCACATCCTC 60.048 44.000 0.00 0.00 40.28 3.71
433 435 5.184096 GTCACGATATGATACCACATCCTCT 59.816 44.000 0.00 0.00 40.28 3.69
434 436 5.416013 TCACGATATGATACCACATCCTCTC 59.584 44.000 0.00 0.00 29.99 3.20
435 437 5.417266 CACGATATGATACCACATCCTCTCT 59.583 44.000 0.00 0.00 0.00 3.10
436 438 6.013379 ACGATATGATACCACATCCTCTCTT 58.987 40.000 0.00 0.00 0.00 2.85
437 439 6.495181 ACGATATGATACCACATCCTCTCTTT 59.505 38.462 0.00 0.00 0.00 2.52
438 440 7.032580 CGATATGATACCACATCCTCTCTTTC 58.967 42.308 0.00 0.00 0.00 2.62
439 441 5.559148 ATGATACCACATCCTCTCTTTCC 57.441 43.478 0.00 0.00 0.00 3.13
440 442 4.624913 TGATACCACATCCTCTCTTTCCT 58.375 43.478 0.00 0.00 0.00 3.36
441 443 4.651503 TGATACCACATCCTCTCTTTCCTC 59.348 45.833 0.00 0.00 0.00 3.71
442 444 2.907892 ACCACATCCTCTCTTTCCTCA 58.092 47.619 0.00 0.00 0.00 3.86
443 445 3.458831 ACCACATCCTCTCTTTCCTCAT 58.541 45.455 0.00 0.00 0.00 2.90
444 446 3.848975 ACCACATCCTCTCTTTCCTCATT 59.151 43.478 0.00 0.00 0.00 2.57
445 447 4.290722 ACCACATCCTCTCTTTCCTCATTT 59.709 41.667 0.00 0.00 0.00 2.32
446 448 5.488919 ACCACATCCTCTCTTTCCTCATTTA 59.511 40.000 0.00 0.00 0.00 1.40
447 449 6.012508 ACCACATCCTCTCTTTCCTCATTTAA 60.013 38.462 0.00 0.00 0.00 1.52
448 450 7.059156 CCACATCCTCTCTTTCCTCATTTAAT 58.941 38.462 0.00 0.00 0.00 1.40
449 451 7.013083 CCACATCCTCTCTTTCCTCATTTAATG 59.987 40.741 0.00 0.00 0.00 1.90
450 452 7.013083 CACATCCTCTCTTTCCTCATTTAATGG 59.987 40.741 5.02 0.00 0.00 3.16
451 453 6.642733 TCCTCTCTTTCCTCATTTAATGGT 57.357 37.500 5.02 0.00 0.00 3.55
452 454 6.418101 TCCTCTCTTTCCTCATTTAATGGTG 58.582 40.000 5.02 0.00 0.00 4.17
453 455 6.012508 TCCTCTCTTTCCTCATTTAATGGTGT 60.013 38.462 5.02 0.00 0.00 4.16
454 456 6.094603 CCTCTCTTTCCTCATTTAATGGTGTG 59.905 42.308 5.02 0.00 0.00 3.82
455 457 5.415701 TCTCTTTCCTCATTTAATGGTGTGC 59.584 40.000 5.02 0.00 0.00 4.57
456 458 4.462483 TCTTTCCTCATTTAATGGTGTGCC 59.538 41.667 5.02 0.00 0.00 5.01
464 466 4.717233 TTTAATGGTGTGCCACATCATC 57.283 40.909 23.04 0.00 46.26 2.92
465 467 1.477553 AATGGTGTGCCACATCATCC 58.522 50.000 23.04 9.53 46.26 3.51
466 468 0.332293 ATGGTGTGCCACATCATCCA 59.668 50.000 17.74 12.25 46.26 3.41
467 469 0.112025 TGGTGTGCCACATCATCCAA 59.888 50.000 6.71 0.00 40.46 3.53
468 470 1.255882 GGTGTGCCACATCATCCAAA 58.744 50.000 2.49 0.00 35.86 3.28
469 471 1.617850 GGTGTGCCACATCATCCAAAA 59.382 47.619 2.49 0.00 35.86 2.44
470 472 2.036992 GGTGTGCCACATCATCCAAAAA 59.963 45.455 2.49 0.00 35.86 1.94
490 492 6.780457 AAAAATCTACTAGTTGGCATGCAT 57.220 33.333 21.36 4.57 0.00 3.96
491 493 5.762825 AAATCTACTAGTTGGCATGCATG 57.237 39.130 22.70 22.70 0.00 4.06
492 494 3.198409 TCTACTAGTTGGCATGCATGG 57.802 47.619 27.34 11.61 0.00 3.66
493 495 2.505407 TCTACTAGTTGGCATGCATGGT 59.495 45.455 27.34 16.57 0.00 3.55
494 496 2.220653 ACTAGTTGGCATGCATGGTT 57.779 45.000 27.34 3.11 0.00 3.67
495 497 2.528564 ACTAGTTGGCATGCATGGTTT 58.471 42.857 27.34 1.98 0.00 3.27
496 498 2.493278 ACTAGTTGGCATGCATGGTTTC 59.507 45.455 27.34 10.91 0.00 2.78
497 499 1.340088 AGTTGGCATGCATGGTTTCA 58.660 45.000 27.34 2.93 0.00 2.69
498 500 1.001181 AGTTGGCATGCATGGTTTCAC 59.999 47.619 27.34 9.81 0.00 3.18
499 501 1.001181 GTTGGCATGCATGGTTTCACT 59.999 47.619 27.34 0.00 0.00 3.41
500 502 1.340088 TGGCATGCATGGTTTCACTT 58.660 45.000 27.34 0.00 0.00 3.16
501 503 2.523245 TGGCATGCATGGTTTCACTTA 58.477 42.857 27.34 1.76 0.00 2.24
502 504 3.098377 TGGCATGCATGGTTTCACTTAT 58.902 40.909 27.34 0.00 0.00 1.73
503 505 3.119065 TGGCATGCATGGTTTCACTTATG 60.119 43.478 27.34 0.00 0.00 1.90
504 506 3.130869 GGCATGCATGGTTTCACTTATGA 59.869 43.478 27.34 0.00 0.00 2.15
505 507 4.202182 GGCATGCATGGTTTCACTTATGAT 60.202 41.667 27.34 0.00 33.85 2.45
506 508 5.009911 GGCATGCATGGTTTCACTTATGATA 59.990 40.000 27.34 0.00 33.85 2.15
507 509 5.916883 GCATGCATGGTTTCACTTATGATAC 59.083 40.000 27.34 1.22 36.40 2.24
508 510 6.238842 GCATGCATGGTTTCACTTATGATACT 60.239 38.462 27.34 0.00 37.08 2.12
509 511 6.925610 TGCATGGTTTCACTTATGATACTC 57.074 37.500 0.00 0.00 37.08 2.59
510 512 6.653020 TGCATGGTTTCACTTATGATACTCT 58.347 36.000 0.00 0.00 37.08 3.24
511 513 6.763135 TGCATGGTTTCACTTATGATACTCTC 59.237 38.462 0.00 0.00 37.08 3.20
512 514 6.763135 GCATGGTTTCACTTATGATACTCTCA 59.237 38.462 0.00 0.00 37.08 3.27
513 515 7.443575 GCATGGTTTCACTTATGATACTCTCAT 59.556 37.037 0.00 0.00 46.49 2.90
514 516 9.334947 CATGGTTTCACTTATGATACTCTCATT 57.665 33.333 0.00 0.00 42.07 2.57
516 518 9.817809 TGGTTTCACTTATGATACTCTCATTAC 57.182 33.333 0.00 0.00 42.07 1.89
517 519 8.969267 GGTTTCACTTATGATACTCTCATTACG 58.031 37.037 0.00 0.00 42.07 3.18
518 520 9.731819 GTTTCACTTATGATACTCTCATTACGA 57.268 33.333 0.00 0.00 42.07 3.43
519 521 9.731819 TTTCACTTATGATACTCTCATTACGAC 57.268 33.333 0.00 0.00 42.07 4.34
520 522 7.872881 TCACTTATGATACTCTCATTACGACC 58.127 38.462 0.00 0.00 42.07 4.79
521 523 7.501225 TCACTTATGATACTCTCATTACGACCA 59.499 37.037 0.00 0.00 42.07 4.02
522 524 8.135529 CACTTATGATACTCTCATTACGACCAA 58.864 37.037 0.00 0.00 42.07 3.67
523 525 8.136165 ACTTATGATACTCTCATTACGACCAAC 58.864 37.037 0.00 0.00 42.07 3.77
552 554 4.202326 ACACGGTACAGTTCTGATTTTCCT 60.202 41.667 6.83 0.00 0.00 3.36
683 689 4.757657 TCTGTTGGTTAATTTGCGCTTCTA 59.242 37.500 9.73 0.00 0.00 2.10
684 690 5.041951 TGTTGGTTAATTTGCGCTTCTAG 57.958 39.130 9.73 0.00 0.00 2.43
685 691 4.757657 TGTTGGTTAATTTGCGCTTCTAGA 59.242 37.500 9.73 0.00 0.00 2.43
686 692 4.939509 TGGTTAATTTGCGCTTCTAGAC 57.060 40.909 9.73 0.72 0.00 2.59
687 693 4.575885 TGGTTAATTTGCGCTTCTAGACT 58.424 39.130 9.73 0.00 0.00 3.24
688 694 5.001232 TGGTTAATTTGCGCTTCTAGACTT 58.999 37.500 9.73 0.00 0.00 3.01
689 695 5.121768 TGGTTAATTTGCGCTTCTAGACTTC 59.878 40.000 9.73 0.00 0.00 3.01
690 696 5.351740 GGTTAATTTGCGCTTCTAGACTTCT 59.648 40.000 9.73 0.00 0.00 2.85
710 716 8.880991 ACTTCTAGTGACTAGGTCAAGAATTA 57.119 34.615 18.75 0.00 44.49 1.40
881 900 3.995199 TCTCGGCAGCAAATCCTATAAG 58.005 45.455 0.00 0.00 0.00 1.73
883 902 3.466836 TCGGCAGCAAATCCTATAAGTG 58.533 45.455 0.00 0.00 0.00 3.16
890 909 3.189287 GCAAATCCTATAAGTGCCATCGG 59.811 47.826 0.00 0.00 0.00 4.18
905 924 2.733552 CCATCGGCTGATCGAGTAAATG 59.266 50.000 4.63 0.00 42.69 2.32
920 939 9.832445 ATCGAGTAAATGTACACAATATTCCTT 57.168 29.630 0.00 0.00 32.12 3.36
941 963 2.320587 GCCAGCCGCCAATATCGAG 61.321 63.158 0.00 0.00 0.00 4.04
995 1054 2.757917 GGAGCTGAGCGAGGAGGT 60.758 66.667 0.00 0.00 0.00 3.85
1298 1358 4.181578 AGCTGTTGTGTTCCATATACGAC 58.818 43.478 0.00 0.00 33.93 4.34
1336 1396 2.344592 ACTGTTGGGGGTTCTGTATGA 58.655 47.619 0.00 0.00 0.00 2.15
1368 1428 2.651455 CCTTGATCATGAGGTGCACAT 58.349 47.619 20.43 12.71 0.00 3.21
1532 1914 1.373435 CCTTTGACACGGTGGGCTA 59.627 57.895 13.48 0.00 0.00 3.93
1570 1953 0.537371 CCTCACCAAGGTGGGTTCAC 60.537 60.000 17.39 0.00 44.63 3.18
1572 1955 0.850100 TCACCAAGGTGGGTTCACAT 59.150 50.000 18.51 0.00 43.37 3.21
1636 2189 0.763035 ACAAGGGTGCTTCTAACCGT 59.237 50.000 0.00 0.00 38.70 4.83
1640 2193 1.154197 GGGTGCTTCTAACCGTTGTC 58.846 55.000 0.00 0.00 38.70 3.18
1641 2194 1.154197 GGTGCTTCTAACCGTTGTCC 58.846 55.000 0.00 0.00 0.00 4.02
1642 2195 1.270678 GGTGCTTCTAACCGTTGTCCT 60.271 52.381 0.00 0.00 0.00 3.85
1643 2196 2.067013 GTGCTTCTAACCGTTGTCCTC 58.933 52.381 0.00 0.00 0.00 3.71
1644 2197 1.336517 TGCTTCTAACCGTTGTCCTCG 60.337 52.381 0.00 0.00 0.00 4.63
1650 2203 4.452733 CCGTTGTCCTCGGCCTCC 62.453 72.222 0.00 0.00 41.48 4.30
1651 2204 3.691342 CGTTGTCCTCGGCCTCCA 61.691 66.667 0.00 0.00 0.00 3.86
1652 2205 2.990479 GTTGTCCTCGGCCTCCAT 59.010 61.111 0.00 0.00 0.00 3.41
1653 2206 1.450312 GTTGTCCTCGGCCTCCATG 60.450 63.158 0.00 0.00 0.00 3.66
1654 2207 1.612146 TTGTCCTCGGCCTCCATGA 60.612 57.895 0.00 0.00 0.00 3.07
1655 2208 1.617018 TTGTCCTCGGCCTCCATGAG 61.617 60.000 0.00 0.00 0.00 2.90
1664 2217 2.702093 CCTCCATGAGGGTGGTTCT 58.298 57.895 2.04 0.00 45.43 3.01
1665 2218 1.879575 CCTCCATGAGGGTGGTTCTA 58.120 55.000 2.04 0.00 45.43 2.10
1666 2219 2.196595 CCTCCATGAGGGTGGTTCTAA 58.803 52.381 2.04 0.00 45.43 2.10
1667 2220 2.780010 CCTCCATGAGGGTGGTTCTAAT 59.220 50.000 2.04 0.00 45.43 1.73
1668 2221 3.973973 CCTCCATGAGGGTGGTTCTAATA 59.026 47.826 2.04 0.00 45.43 0.98
1669 2222 4.040952 CCTCCATGAGGGTGGTTCTAATAG 59.959 50.000 2.04 0.00 45.43 1.73
1670 2223 3.973973 TCCATGAGGGTGGTTCTAATAGG 59.026 47.826 0.00 0.00 40.27 2.57
1671 2224 3.716872 CCATGAGGGTGGTTCTAATAGGT 59.283 47.826 0.00 0.00 34.46 3.08
1696 2249 1.269448 GGCAAGTTGATTTTCAGCCGA 59.731 47.619 7.16 0.00 0.00 5.54
1699 2252 2.163818 AGTTGATTTTCAGCCGACGA 57.836 45.000 0.00 0.00 0.00 4.20
1702 2255 0.320374 TGATTTTCAGCCGACGAGGT 59.680 50.000 0.00 0.00 43.70 3.85
1703 2256 1.270625 TGATTTTCAGCCGACGAGGTT 60.271 47.619 0.00 0.00 43.70 3.50
1704 2257 1.804748 GATTTTCAGCCGACGAGGTTT 59.195 47.619 0.00 0.00 43.70 3.27
1705 2258 0.941542 TTTTCAGCCGACGAGGTTTG 59.058 50.000 0.00 0.00 43.70 2.93
1706 2259 1.503818 TTTCAGCCGACGAGGTTTGC 61.504 55.000 0.00 0.00 43.70 3.68
1890 2443 2.435805 TCCATGGACAGGCTTCACTATC 59.564 50.000 11.44 0.00 0.00 2.08
1892 2445 3.118112 CCATGGACAGGCTTCACTATCTT 60.118 47.826 5.56 0.00 0.00 2.40
1915 2468 1.147153 GAAAGGCCGAGGAGATGGG 59.853 63.158 0.00 0.00 0.00 4.00
1922 2475 0.830648 CCGAGGAGATGGGTTTGCTA 59.169 55.000 0.00 0.00 0.00 3.49
1954 2507 1.202203 CATTTGGGATTGCGCAATCG 58.798 50.000 41.33 28.86 46.11 3.34
1981 2534 5.991606 CCTCCATATATGTTGATGACGTTGT 59.008 40.000 11.73 0.00 0.00 3.32
1989 2542 2.869801 GTTGATGACGTTGTCACCTTCA 59.130 45.455 1.11 0.00 45.65 3.02
1999 2552 1.079503 GTCACCTTCATCGAGCCAAC 58.920 55.000 0.00 0.00 0.00 3.77
2004 2557 1.869767 CCTTCATCGAGCCAACTATGC 59.130 52.381 0.00 0.00 0.00 3.14
2026 2579 3.813596 CCTCAAGGCATACACGGC 58.186 61.111 0.00 0.00 0.00 5.68
2027 2580 2.173669 CCTCAAGGCATACACGGCG 61.174 63.158 4.80 4.80 36.37 6.46
2028 2581 1.153647 CTCAAGGCATACACGGCGA 60.154 57.895 16.62 0.00 36.37 5.54
2029 2582 0.530650 CTCAAGGCATACACGGCGAT 60.531 55.000 16.62 3.31 36.37 4.58
2030 2583 0.529773 TCAAGGCATACACGGCGATC 60.530 55.000 16.62 0.00 36.37 3.69
2031 2584 1.227556 AAGGCATACACGGCGATCC 60.228 57.895 16.62 4.83 36.37 3.36
2032 2585 1.686325 AAGGCATACACGGCGATCCT 61.686 55.000 16.62 7.20 36.37 3.24
2033 2586 1.227556 GGCATACACGGCGATCCTT 60.228 57.895 16.62 0.00 0.00 3.36
2034 2587 1.498865 GGCATACACGGCGATCCTTG 61.499 60.000 16.62 2.74 37.61 3.61
2035 2588 0.529773 GCATACACGGCGATCCTTGA 60.530 55.000 16.62 0.00 35.37 3.02
2036 2589 1.491670 CATACACGGCGATCCTTGAG 58.508 55.000 16.62 0.00 35.37 3.02
2037 2590 0.389391 ATACACGGCGATCCTTGAGG 59.611 55.000 16.62 0.00 35.37 3.86
2085 2638 3.622163 CACCAACTTTGCAAAATGCTCAA 59.378 39.130 13.84 0.00 45.31 3.02
2107 2660 0.110486 CACCCCATTAGATTCCCCCG 59.890 60.000 0.00 0.00 0.00 5.73
2110 2663 1.435256 CCCATTAGATTCCCCCGAGT 58.565 55.000 0.00 0.00 0.00 4.18
2117 2670 2.330216 AGATTCCCCCGAGTAGATTGG 58.670 52.381 0.00 0.00 0.00 3.16
2125 2678 3.305398 CCGAGTAGATTGGGATAGTGC 57.695 52.381 0.00 0.00 0.00 4.40
2126 2679 2.351835 CCGAGTAGATTGGGATAGTGCG 60.352 54.545 0.00 0.00 0.00 5.34
2127 2680 2.351835 CGAGTAGATTGGGATAGTGCGG 60.352 54.545 0.00 0.00 0.00 5.69
2128 2681 1.344763 AGTAGATTGGGATAGTGCGGC 59.655 52.381 0.00 0.00 0.00 6.53
2129 2682 1.070134 GTAGATTGGGATAGTGCGGCA 59.930 52.381 0.00 0.00 0.00 5.69
2130 2683 0.107456 AGATTGGGATAGTGCGGCAG 59.893 55.000 1.18 0.00 0.00 4.85
2131 2684 1.510480 GATTGGGATAGTGCGGCAGC 61.510 60.000 1.18 0.31 45.41 5.25
2142 2695 2.397751 GCGGCAGCAACTATGATGT 58.602 52.632 3.18 0.00 44.75 3.06
2143 2696 0.305922 GCGGCAGCAACTATGATGTC 59.694 55.000 3.18 0.00 44.75 3.06
2144 2697 1.945387 CGGCAGCAACTATGATGTCT 58.055 50.000 0.00 0.00 45.14 3.41
2145 2698 2.283298 CGGCAGCAACTATGATGTCTT 58.717 47.619 0.00 0.00 45.14 3.01
2146 2699 2.031314 CGGCAGCAACTATGATGTCTTG 59.969 50.000 0.00 0.00 45.14 3.02
2147 2700 3.012518 GGCAGCAACTATGATGTCTTGT 58.987 45.455 0.00 0.00 43.99 3.16
2148 2701 3.441572 GGCAGCAACTATGATGTCTTGTT 59.558 43.478 0.00 0.00 43.99 2.83
2149 2702 4.437930 GGCAGCAACTATGATGTCTTGTTC 60.438 45.833 0.00 0.00 43.99 3.18
2150 2703 4.394300 GCAGCAACTATGATGTCTTGTTCT 59.606 41.667 0.00 0.00 44.75 3.01
2151 2704 5.106396 GCAGCAACTATGATGTCTTGTTCTT 60.106 40.000 0.00 0.00 44.75 2.52
2152 2705 6.541086 CAGCAACTATGATGTCTTGTTCTTC 58.459 40.000 0.00 0.00 38.15 2.87
2153 2706 6.148315 CAGCAACTATGATGTCTTGTTCTTCA 59.852 38.462 0.00 0.00 38.15 3.02
2154 2707 6.712095 AGCAACTATGATGTCTTGTTCTTCAA 59.288 34.615 0.00 0.00 34.61 2.69
2155 2708 7.392673 AGCAACTATGATGTCTTGTTCTTCAAT 59.607 33.333 0.00 0.00 35.35 2.57
2156 2709 8.025445 GCAACTATGATGTCTTGTTCTTCAATT 58.975 33.333 0.00 0.00 35.35 2.32
2157 2710 9.552114 CAACTATGATGTCTTGTTCTTCAATTC 57.448 33.333 0.00 0.00 35.35 2.17
2158 2711 8.273780 ACTATGATGTCTTGTTCTTCAATTCC 57.726 34.615 0.00 0.00 35.35 3.01
2159 2712 5.964958 TGATGTCTTGTTCTTCAATTCCC 57.035 39.130 0.00 0.00 35.35 3.97
2160 2713 5.634118 TGATGTCTTGTTCTTCAATTCCCT 58.366 37.500 0.00 0.00 35.35 4.20
2161 2714 6.070656 TGATGTCTTGTTCTTCAATTCCCTT 58.929 36.000 0.00 0.00 35.35 3.95
2162 2715 5.772825 TGTCTTGTTCTTCAATTCCCTTG 57.227 39.130 0.00 0.00 35.35 3.61
2163 2716 4.037923 TGTCTTGTTCTTCAATTCCCTTGC 59.962 41.667 0.00 0.00 35.35 4.01
2164 2717 3.573967 TCTTGTTCTTCAATTCCCTTGCC 59.426 43.478 0.00 0.00 35.35 4.52
2165 2718 2.956132 TGTTCTTCAATTCCCTTGCCA 58.044 42.857 0.00 0.00 34.66 4.92
2166 2719 2.892852 TGTTCTTCAATTCCCTTGCCAG 59.107 45.455 0.00 0.00 34.66 4.85
2167 2720 2.893489 GTTCTTCAATTCCCTTGCCAGT 59.107 45.455 0.00 0.00 34.66 4.00
2168 2721 4.079253 GTTCTTCAATTCCCTTGCCAGTA 58.921 43.478 0.00 0.00 34.66 2.74
2169 2722 3.686016 TCTTCAATTCCCTTGCCAGTAC 58.314 45.455 0.00 0.00 34.66 2.73
2170 2723 2.507407 TCAATTCCCTTGCCAGTACC 57.493 50.000 0.00 0.00 34.66 3.34
2171 2724 1.992557 TCAATTCCCTTGCCAGTACCT 59.007 47.619 0.00 0.00 34.66 3.08
2172 2725 2.378547 TCAATTCCCTTGCCAGTACCTT 59.621 45.455 0.00 0.00 34.66 3.50
2173 2726 2.493278 CAATTCCCTTGCCAGTACCTTG 59.507 50.000 0.00 0.00 0.00 3.61
2174 2727 0.404040 TTCCCTTGCCAGTACCTTGG 59.596 55.000 0.00 0.00 41.35 3.61
2175 2728 1.000896 CCCTTGCCAGTACCTTGGG 60.001 63.158 3.52 0.00 38.72 4.12
2176 2729 1.767692 CCTTGCCAGTACCTTGGGT 59.232 57.895 3.52 0.00 38.72 4.51
2177 2730 0.112412 CCTTGCCAGTACCTTGGGTT 59.888 55.000 3.52 0.00 38.72 4.11
2178 2731 1.247567 CTTGCCAGTACCTTGGGTTG 58.752 55.000 3.52 0.00 38.72 3.77
2179 2732 0.553819 TTGCCAGTACCTTGGGTTGT 59.446 50.000 3.52 0.00 38.72 3.32
2180 2733 0.109723 TGCCAGTACCTTGGGTTGTC 59.890 55.000 3.52 0.00 38.72 3.18
2181 2734 0.400594 GCCAGTACCTTGGGTTGTCT 59.599 55.000 3.52 0.00 38.72 3.41
2182 2735 1.610886 GCCAGTACCTTGGGTTGTCTC 60.611 57.143 3.52 0.00 38.72 3.36
2183 2736 1.978580 CCAGTACCTTGGGTTGTCTCT 59.021 52.381 0.00 0.00 37.09 3.10
2184 2737 2.028020 CCAGTACCTTGGGTTGTCTCTC 60.028 54.545 0.00 0.00 37.09 3.20
2185 2738 1.893801 AGTACCTTGGGTTGTCTCTCG 59.106 52.381 0.00 0.00 37.09 4.04
2186 2739 1.067071 GTACCTTGGGTTGTCTCTCGG 60.067 57.143 0.00 0.00 37.09 4.63
2187 2740 1.376037 CCTTGGGTTGTCTCTCGGC 60.376 63.158 0.00 0.00 0.00 5.54
2188 2741 1.376037 CTTGGGTTGTCTCTCGGCC 60.376 63.158 0.00 0.00 0.00 6.13
2189 2742 1.831652 CTTGGGTTGTCTCTCGGCCT 61.832 60.000 0.00 0.00 0.00 5.19
2190 2743 1.415672 TTGGGTTGTCTCTCGGCCTT 61.416 55.000 0.00 0.00 0.00 4.35
2191 2744 1.079057 GGGTTGTCTCTCGGCCTTC 60.079 63.158 0.00 0.00 0.00 3.46
2192 2745 1.446272 GGTTGTCTCTCGGCCTTCG 60.446 63.158 0.00 0.00 40.90 3.79
2193 2746 1.289380 GTTGTCTCTCGGCCTTCGT 59.711 57.895 0.00 0.00 40.32 3.85
2194 2747 0.524862 GTTGTCTCTCGGCCTTCGTA 59.475 55.000 0.00 0.00 40.32 3.43
2195 2748 1.068055 GTTGTCTCTCGGCCTTCGTAA 60.068 52.381 0.00 0.00 40.32 3.18
2196 2749 0.809385 TGTCTCTCGGCCTTCGTAAG 59.191 55.000 0.00 0.00 40.32 2.34
2197 2750 0.525882 GTCTCTCGGCCTTCGTAAGC 60.526 60.000 0.00 0.00 40.32 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.010000 AAGAAGACGTCTGAGGCAACTTCT 62.010 45.833 20.85 11.70 42.12 2.85
31 32 2.775890 TCGTGGACTAAGAAGACGTCT 58.224 47.619 13.58 13.58 38.69 4.18
56 57 6.276847 CAATGTACATTCAGTAGGAGGAGAC 58.723 44.000 18.25 0.00 32.19 3.36
64 65 3.792401 TCCGGCAATGTACATTCAGTAG 58.208 45.455 18.25 8.17 32.19 2.57
65 66 3.897141 TCCGGCAATGTACATTCAGTA 57.103 42.857 18.25 1.09 0.00 2.74
91 92 7.061673 TGGTCGCATTTTTCTGAATTTATTTCG 59.938 33.333 0.00 0.00 37.13 3.46
92 93 8.162245 GTGGTCGCATTTTTCTGAATTTATTTC 58.838 33.333 0.00 0.00 34.72 2.17
102 103 2.791383 TTGGTGGTCGCATTTTTCTG 57.209 45.000 0.00 0.00 0.00 3.02
104 105 2.730928 CACATTGGTGGTCGCATTTTTC 59.269 45.455 0.00 0.00 41.45 2.29
107 108 1.614996 TCACATTGGTGGTCGCATTT 58.385 45.000 0.00 0.00 45.32 2.32
110 111 0.179032 ACTTCACATTGGTGGTCGCA 60.179 50.000 0.00 0.00 45.32 5.10
111 112 1.803334 TACTTCACATTGGTGGTCGC 58.197 50.000 0.00 0.00 45.32 5.19
113 114 6.349300 AGTCATATACTTCACATTGGTGGTC 58.651 40.000 0.00 0.00 45.32 4.02
121 122 6.256539 CACGCTTCAAGTCATATACTTCACAT 59.743 38.462 0.00 0.00 45.64 3.21
125 126 6.074088 CCATCACGCTTCAAGTCATATACTTC 60.074 42.308 0.00 0.00 45.64 3.01
130 131 3.470709 CCCATCACGCTTCAAGTCATAT 58.529 45.455 0.00 0.00 0.00 1.78
136 137 1.293924 CTAGCCCATCACGCTTCAAG 58.706 55.000 0.00 0.00 37.79 3.02
142 143 1.067071 GGTATACCTAGCCCATCACGC 60.067 57.143 15.09 0.00 0.00 5.34
166 168 9.471702 AACTTGTGATTGAATGATTAGAAGGAT 57.528 29.630 0.00 0.00 0.00 3.24
172 174 7.482743 CGAACCAACTTGTGATTGAATGATTAG 59.517 37.037 0.00 0.00 0.00 1.73
177 179 3.670055 GCGAACCAACTTGTGATTGAATG 59.330 43.478 0.00 0.00 0.00 2.67
198 200 0.321653 ACAACTCAAGATCCCCGTGC 60.322 55.000 0.00 0.00 0.00 5.34
244 246 6.750775 GTTAATTACGACTAGCCTAAGCAG 57.249 41.667 0.00 0.00 43.56 4.24
265 267 9.955102 TGATACTAGTATATGATACTCACCGTT 57.045 33.333 15.42 0.00 0.00 4.44
309 311 9.185680 TATGATACCATGCATTATAGACGTAGT 57.814 33.333 0.00 0.00 37.62 2.73
312 314 8.531982 ACTTATGATACCATGCATTATAGACGT 58.468 33.333 0.00 0.00 34.31 4.34
313 315 8.932945 ACTTATGATACCATGCATTATAGACG 57.067 34.615 0.00 0.00 34.31 4.18
345 347 9.023967 GCATGACAATTAATAAAGCAACCTAAG 57.976 33.333 0.00 0.00 0.00 2.18
346 348 8.526978 TGCATGACAATTAATAAAGCAACCTAA 58.473 29.630 0.00 0.00 0.00 2.69
347 349 8.060931 TGCATGACAATTAATAAAGCAACCTA 57.939 30.769 0.00 0.00 0.00 3.08
348 350 6.934056 TGCATGACAATTAATAAAGCAACCT 58.066 32.000 0.00 0.00 0.00 3.50
349 351 7.254522 CCATGCATGACAATTAATAAAGCAACC 60.255 37.037 28.31 0.00 32.83 3.77
350 352 7.623770 CCATGCATGACAATTAATAAAGCAAC 58.376 34.615 28.31 0.00 32.83 4.17
351 353 6.258287 GCCATGCATGACAATTAATAAAGCAA 59.742 34.615 28.31 0.00 32.83 3.91
352 354 5.754406 GCCATGCATGACAATTAATAAAGCA 59.246 36.000 28.31 0.00 0.00 3.91
353 355 5.754406 TGCCATGCATGACAATTAATAAAGC 59.246 36.000 28.31 16.90 31.71 3.51
354 356 6.757478 TGTGCCATGCATGACAATTAATAAAG 59.243 34.615 28.31 7.28 41.91 1.85
355 357 6.637657 TGTGCCATGCATGACAATTAATAAA 58.362 32.000 28.31 0.00 41.91 1.40
356 358 6.218108 TGTGCCATGCATGACAATTAATAA 57.782 33.333 28.31 0.00 41.91 1.40
357 359 5.848833 TGTGCCATGCATGACAATTAATA 57.151 34.783 28.31 3.11 41.91 0.98
358 360 4.739587 TGTGCCATGCATGACAATTAAT 57.260 36.364 28.31 0.00 41.91 1.40
359 361 4.532314 TTGTGCCATGCATGACAATTAA 57.468 36.364 28.31 14.91 41.91 1.40
360 362 4.021280 ACTTTGTGCCATGCATGACAATTA 60.021 37.500 28.31 14.85 41.91 1.40
361 363 3.244284 ACTTTGTGCCATGCATGACAATT 60.244 39.130 28.31 16.34 41.91 2.32
362 364 2.300723 ACTTTGTGCCATGCATGACAAT 59.699 40.909 28.31 13.58 41.91 2.71
363 365 1.687660 ACTTTGTGCCATGCATGACAA 59.312 42.857 28.31 25.23 41.91 3.18
364 366 1.330234 ACTTTGTGCCATGCATGACA 58.670 45.000 28.31 20.53 41.91 3.58
365 367 3.574284 TTACTTTGTGCCATGCATGAC 57.426 42.857 28.31 17.77 41.91 3.06
366 368 4.704057 TGTATTACTTTGTGCCATGCATGA 59.296 37.500 28.31 6.08 41.91 3.07
367 369 4.996344 TGTATTACTTTGTGCCATGCATG 58.004 39.130 20.19 20.19 41.91 4.06
368 370 5.047448 TGTTGTATTACTTTGTGCCATGCAT 60.047 36.000 0.00 0.00 41.91 3.96
369 371 4.279420 TGTTGTATTACTTTGTGCCATGCA 59.721 37.500 0.00 0.00 35.60 3.96
370 372 4.804108 TGTTGTATTACTTTGTGCCATGC 58.196 39.130 0.00 0.00 0.00 4.06
371 373 8.978564 TTAATGTTGTATTACTTTGTGCCATG 57.021 30.769 0.00 0.00 0.00 3.66
388 390 9.516091 CGTGACATCGTATCATATTTAATGTTG 57.484 33.333 0.00 0.00 0.00 3.33
389 391 9.471084 TCGTGACATCGTATCATATTTAATGTT 57.529 29.630 0.00 0.00 0.00 2.71
390 392 9.639601 ATCGTGACATCGTATCATATTTAATGT 57.360 29.630 0.00 0.00 0.00 2.71
398 400 8.557029 GGTATCATATCGTGACATCGTATCATA 58.443 37.037 0.00 0.00 40.28 2.15
399 401 7.067008 TGGTATCATATCGTGACATCGTATCAT 59.933 37.037 0.00 0.00 40.28 2.45
400 402 6.373216 TGGTATCATATCGTGACATCGTATCA 59.627 38.462 0.00 0.00 40.28 2.15
401 403 6.687531 GTGGTATCATATCGTGACATCGTATC 59.312 42.308 0.00 0.00 40.28 2.24
402 404 6.150474 TGTGGTATCATATCGTGACATCGTAT 59.850 38.462 0.00 0.00 40.28 3.06
403 405 5.470777 TGTGGTATCATATCGTGACATCGTA 59.529 40.000 0.00 0.00 40.28 3.43
404 406 4.277423 TGTGGTATCATATCGTGACATCGT 59.723 41.667 0.00 0.00 40.28 3.73
405 407 4.794169 TGTGGTATCATATCGTGACATCG 58.206 43.478 0.00 0.00 40.28 3.84
406 408 5.807520 GGATGTGGTATCATATCGTGACATC 59.192 44.000 6.64 0.00 40.87 3.06
407 409 5.481824 AGGATGTGGTATCATATCGTGACAT 59.518 40.000 7.08 0.00 40.87 3.06
408 410 4.832823 AGGATGTGGTATCATATCGTGACA 59.167 41.667 7.08 0.00 40.87 3.58
409 411 5.184096 AGAGGATGTGGTATCATATCGTGAC 59.816 44.000 12.01 0.46 40.87 3.67
410 412 5.325239 AGAGGATGTGGTATCATATCGTGA 58.675 41.667 12.01 0.00 40.87 4.35
411 413 5.417266 AGAGAGGATGTGGTATCATATCGTG 59.583 44.000 12.01 0.00 40.87 4.35
412 414 5.575157 AGAGAGGATGTGGTATCATATCGT 58.425 41.667 7.55 7.55 40.87 3.73
413 415 6.522625 AAGAGAGGATGTGGTATCATATCG 57.477 41.667 6.64 0.00 40.87 2.92
414 416 7.180051 AGGAAAGAGAGGATGTGGTATCATATC 59.820 40.741 4.20 4.20 39.74 1.63
415 417 7.021873 AGGAAAGAGAGGATGTGGTATCATAT 58.978 38.462 0.00 0.00 0.00 1.78
416 418 6.385443 AGGAAAGAGAGGATGTGGTATCATA 58.615 40.000 0.00 0.00 0.00 2.15
417 419 5.222870 AGGAAAGAGAGGATGTGGTATCAT 58.777 41.667 0.00 0.00 0.00 2.45
418 420 4.624913 AGGAAAGAGAGGATGTGGTATCA 58.375 43.478 0.00 0.00 0.00 2.15
419 421 4.651503 TGAGGAAAGAGAGGATGTGGTATC 59.348 45.833 0.00 0.00 0.00 2.24
420 422 4.624913 TGAGGAAAGAGAGGATGTGGTAT 58.375 43.478 0.00 0.00 0.00 2.73
421 423 4.061131 TGAGGAAAGAGAGGATGTGGTA 57.939 45.455 0.00 0.00 0.00 3.25
422 424 2.907892 TGAGGAAAGAGAGGATGTGGT 58.092 47.619 0.00 0.00 0.00 4.16
423 425 4.500499 AATGAGGAAAGAGAGGATGTGG 57.500 45.455 0.00 0.00 0.00 4.17
424 426 7.013083 CCATTAAATGAGGAAAGAGAGGATGTG 59.987 40.741 0.00 0.00 0.00 3.21
425 427 7.059156 CCATTAAATGAGGAAAGAGAGGATGT 58.941 38.462 0.00 0.00 0.00 3.06
426 428 7.013083 CACCATTAAATGAGGAAAGAGAGGATG 59.987 40.741 0.00 0.00 0.00 3.51
427 429 7.059156 CACCATTAAATGAGGAAAGAGAGGAT 58.941 38.462 0.00 0.00 0.00 3.24
428 430 6.012508 ACACCATTAAATGAGGAAAGAGAGGA 60.013 38.462 0.00 0.00 0.00 3.71
429 431 6.094603 CACACCATTAAATGAGGAAAGAGAGG 59.905 42.308 0.00 0.00 0.00 3.69
430 432 6.404074 GCACACCATTAAATGAGGAAAGAGAG 60.404 42.308 0.00 0.00 0.00 3.20
431 433 5.415701 GCACACCATTAAATGAGGAAAGAGA 59.584 40.000 0.00 0.00 0.00 3.10
432 434 5.393461 GGCACACCATTAAATGAGGAAAGAG 60.393 44.000 0.00 0.00 35.26 2.85
433 435 4.462483 GGCACACCATTAAATGAGGAAAGA 59.538 41.667 0.00 0.00 35.26 2.52
434 436 4.220382 TGGCACACCATTAAATGAGGAAAG 59.780 41.667 0.00 0.00 42.67 2.62
435 437 4.155709 TGGCACACCATTAAATGAGGAAA 58.844 39.130 0.00 0.00 42.67 3.13
436 438 3.772387 TGGCACACCATTAAATGAGGAA 58.228 40.909 0.00 0.00 42.67 3.36
437 439 3.448093 TGGCACACCATTAAATGAGGA 57.552 42.857 0.00 0.00 42.67 3.71
467 469 6.406177 CCATGCATGCCAACTAGTAGATTTTT 60.406 38.462 21.69 0.00 0.00 1.94
468 470 5.068198 CCATGCATGCCAACTAGTAGATTTT 59.932 40.000 21.69 0.00 0.00 1.82
469 471 4.581824 CCATGCATGCCAACTAGTAGATTT 59.418 41.667 21.69 0.00 0.00 2.17
470 472 4.139786 CCATGCATGCCAACTAGTAGATT 58.860 43.478 21.69 0.00 0.00 2.40
471 473 3.137176 ACCATGCATGCCAACTAGTAGAT 59.863 43.478 21.69 0.00 0.00 1.98
472 474 2.505407 ACCATGCATGCCAACTAGTAGA 59.495 45.455 21.69 0.00 0.00 2.59
473 475 2.923121 ACCATGCATGCCAACTAGTAG 58.077 47.619 21.69 5.97 0.00 2.57
474 476 3.364460 AACCATGCATGCCAACTAGTA 57.636 42.857 21.69 0.00 0.00 1.82
475 477 2.220653 AACCATGCATGCCAACTAGT 57.779 45.000 21.69 8.85 0.00 2.57
476 478 2.492881 TGAAACCATGCATGCCAACTAG 59.507 45.455 21.69 8.18 0.00 2.57
477 479 2.230992 GTGAAACCATGCATGCCAACTA 59.769 45.455 21.69 2.61 0.00 2.24
478 480 1.001181 GTGAAACCATGCATGCCAACT 59.999 47.619 21.69 3.03 0.00 3.16
479 481 1.001181 AGTGAAACCATGCATGCCAAC 59.999 47.619 21.69 13.31 37.80 3.77
480 482 1.340088 AGTGAAACCATGCATGCCAA 58.660 45.000 21.69 0.00 37.80 4.52
481 483 1.340088 AAGTGAAACCATGCATGCCA 58.660 45.000 21.69 12.31 37.80 4.92
482 484 3.130869 TCATAAGTGAAACCATGCATGCC 59.869 43.478 21.69 9.94 37.80 4.40
483 485 4.374843 TCATAAGTGAAACCATGCATGC 57.625 40.909 21.69 11.82 37.80 4.06
484 486 7.228108 AGAGTATCATAAGTGAAACCATGCATG 59.772 37.037 20.19 20.19 38.01 4.06
485 487 7.285566 AGAGTATCATAAGTGAAACCATGCAT 58.714 34.615 0.00 0.00 38.01 3.96
486 488 6.653020 AGAGTATCATAAGTGAAACCATGCA 58.347 36.000 0.00 0.00 38.01 3.96
487 489 6.763135 TGAGAGTATCATAAGTGAAACCATGC 59.237 38.462 0.00 0.00 38.01 4.06
502 504 4.954202 AGGTTGGTCGTAATGAGAGTATCA 59.046 41.667 0.00 0.00 43.70 2.15
503 505 5.517322 AGGTTGGTCGTAATGAGAGTATC 57.483 43.478 0.00 0.00 0.00 2.24
504 506 5.934402 AAGGTTGGTCGTAATGAGAGTAT 57.066 39.130 0.00 0.00 0.00 2.12
505 507 5.711506 TGTAAGGTTGGTCGTAATGAGAGTA 59.288 40.000 0.00 0.00 0.00 2.59
506 508 4.525487 TGTAAGGTTGGTCGTAATGAGAGT 59.475 41.667 0.00 0.00 0.00 3.24
507 509 4.863131 GTGTAAGGTTGGTCGTAATGAGAG 59.137 45.833 0.00 0.00 0.00 3.20
508 510 4.281435 TGTGTAAGGTTGGTCGTAATGAGA 59.719 41.667 0.00 0.00 0.00 3.27
509 511 4.387862 GTGTGTAAGGTTGGTCGTAATGAG 59.612 45.833 0.00 0.00 0.00 2.90
510 512 4.309099 GTGTGTAAGGTTGGTCGTAATGA 58.691 43.478 0.00 0.00 0.00 2.57
511 513 3.122278 CGTGTGTAAGGTTGGTCGTAATG 59.878 47.826 0.00 0.00 0.00 1.90
512 514 3.319755 CGTGTGTAAGGTTGGTCGTAAT 58.680 45.455 0.00 0.00 0.00 1.89
513 515 2.545532 CCGTGTGTAAGGTTGGTCGTAA 60.546 50.000 0.00 0.00 0.00 3.18
514 516 1.000385 CCGTGTGTAAGGTTGGTCGTA 60.000 52.381 0.00 0.00 0.00 3.43
515 517 0.249573 CCGTGTGTAAGGTTGGTCGT 60.250 55.000 0.00 0.00 0.00 4.34
516 518 0.249573 ACCGTGTGTAAGGTTGGTCG 60.250 55.000 0.00 0.00 34.89 4.79
517 519 2.224018 TGTACCGTGTGTAAGGTTGGTC 60.224 50.000 0.00 0.00 39.49 4.02
518 520 1.761784 TGTACCGTGTGTAAGGTTGGT 59.238 47.619 0.00 0.00 39.49 3.67
519 521 2.224113 ACTGTACCGTGTGTAAGGTTGG 60.224 50.000 0.00 0.00 39.49 3.77
520 522 3.102052 ACTGTACCGTGTGTAAGGTTG 57.898 47.619 0.00 0.00 39.49 3.77
521 523 3.385755 AGAACTGTACCGTGTGTAAGGTT 59.614 43.478 0.00 0.00 39.49 3.50
522 524 2.961062 AGAACTGTACCGTGTGTAAGGT 59.039 45.455 0.00 0.00 41.71 3.50
523 525 3.005050 TCAGAACTGTACCGTGTGTAAGG 59.995 47.826 1.73 0.00 0.00 2.69
552 554 2.167693 CCGAGTAATTACCAGGCAGACA 59.832 50.000 12.05 0.00 0.00 3.41
648 650 0.254178 CCAACAGATAGCCTGCCAGT 59.746 55.000 0.00 0.00 46.81 4.00
683 689 6.129414 TCTTGACCTAGTCACTAGAAGTCT 57.871 41.667 13.93 0.00 42.60 3.24
684 690 6.821031 TTCTTGACCTAGTCACTAGAAGTC 57.179 41.667 13.93 12.88 42.60 3.01
685 691 7.784470 AATTCTTGACCTAGTCACTAGAAGT 57.216 36.000 13.93 3.36 42.60 3.01
686 692 9.959749 GATAATTCTTGACCTAGTCACTAGAAG 57.040 37.037 13.93 9.14 42.60 2.85
687 693 9.475620 TGATAATTCTTGACCTAGTCACTAGAA 57.524 33.333 13.93 12.03 42.60 2.10
688 694 9.647918 ATGATAATTCTTGACCTAGTCACTAGA 57.352 33.333 13.93 0.00 42.60 2.43
890 909 6.589830 ATTGTGTACATTTACTCGATCAGC 57.410 37.500 0.00 0.00 0.00 4.26
893 912 9.477484 AGGAATATTGTGTACATTTACTCGATC 57.523 33.333 0.00 0.00 31.21 3.69
905 924 4.035675 GCTGGCTGAAGGAATATTGTGTAC 59.964 45.833 0.00 0.00 0.00 2.90
920 939 1.227943 GATATTGGCGGCTGGCTGA 60.228 57.895 21.03 9.37 42.94 4.26
941 963 3.066621 TGAAATCACTGGTGAACTTGTGC 59.933 43.478 7.53 0.00 43.58 4.57
995 1054 1.358877 CGATGTCTTCGCCATCAACA 58.641 50.000 0.00 0.00 41.69 3.33
1011 1070 2.607750 ACCACCTCAGGCCACGAT 60.608 61.111 5.01 0.00 0.00 3.73
1245 1304 1.072331 CAGGTTGCAGGGAGTGTTAGT 59.928 52.381 0.00 0.00 0.00 2.24
1298 1358 2.807967 CAGTTGGGATACATATGCACGG 59.192 50.000 1.58 0.00 39.74 4.94
1336 1396 2.492025 TGATCAAGGGATTACAGGCCT 58.508 47.619 0.00 0.00 32.67 5.19
1423 1488 2.785857 AGGGCTGCCTCCTTGTATTTAT 59.214 45.455 19.68 0.00 0.00 1.40
1532 1914 1.757699 GGATCTCGAGTAACAAGGCCT 59.242 52.381 13.13 0.00 0.00 5.19
1570 1953 2.505819 ACCCAAGCTAACCACCTCTATG 59.494 50.000 0.00 0.00 0.00 2.23
1572 1955 1.906574 CACCCAAGCTAACCACCTCTA 59.093 52.381 0.00 0.00 0.00 2.43
1619 2172 1.142262 ACAACGGTTAGAAGCACCCTT 59.858 47.619 0.00 0.00 0.00 3.95
1636 2189 1.612146 TCATGGAGGCCGAGGACAA 60.612 57.895 0.00 0.00 0.00 3.18
1647 2200 4.040952 CCTATTAGAACCACCCTCATGGAG 59.959 50.000 0.00 0.00 43.02 3.86
1648 2201 3.973973 CCTATTAGAACCACCCTCATGGA 59.026 47.826 0.00 0.00 43.02 3.41
1649 2202 3.716872 ACCTATTAGAACCACCCTCATGG 59.283 47.826 0.00 0.00 46.10 3.66
1650 2203 4.708177 CACCTATTAGAACCACCCTCATG 58.292 47.826 0.00 0.00 0.00 3.07
1651 2204 3.136626 GCACCTATTAGAACCACCCTCAT 59.863 47.826 0.00 0.00 0.00 2.90
1652 2205 2.504175 GCACCTATTAGAACCACCCTCA 59.496 50.000 0.00 0.00 0.00 3.86
1653 2206 2.158798 GGCACCTATTAGAACCACCCTC 60.159 54.545 0.00 0.00 0.00 4.30
1654 2207 1.844497 GGCACCTATTAGAACCACCCT 59.156 52.381 0.00 0.00 0.00 4.34
1655 2208 1.844497 AGGCACCTATTAGAACCACCC 59.156 52.381 0.00 0.00 0.00 4.61
1656 2209 2.421529 CCAGGCACCTATTAGAACCACC 60.422 54.545 0.00 0.00 0.00 4.61
1657 2210 2.919228 CCAGGCACCTATTAGAACCAC 58.081 52.381 0.00 0.00 0.00 4.16
1658 2211 1.211949 GCCAGGCACCTATTAGAACCA 59.788 52.381 6.55 0.00 0.00 3.67
1659 2212 1.211949 TGCCAGGCACCTATTAGAACC 59.788 52.381 11.22 0.00 31.71 3.62
1660 2213 2.710096 TGCCAGGCACCTATTAGAAC 57.290 50.000 11.22 0.00 31.71 3.01
1661 2214 2.576191 ACTTGCCAGGCACCTATTAGAA 59.424 45.455 15.89 0.00 38.71 2.10
1662 2215 2.196595 ACTTGCCAGGCACCTATTAGA 58.803 47.619 15.89 0.00 38.71 2.10
1663 2216 2.684881 CAACTTGCCAGGCACCTATTAG 59.315 50.000 15.89 10.58 38.71 1.73
1664 2217 2.307392 TCAACTTGCCAGGCACCTATTA 59.693 45.455 15.89 0.00 38.71 0.98
1665 2218 1.075374 TCAACTTGCCAGGCACCTATT 59.925 47.619 15.89 3.02 38.71 1.73
1666 2219 0.698238 TCAACTTGCCAGGCACCTAT 59.302 50.000 15.89 0.00 38.71 2.57
1667 2220 0.698238 ATCAACTTGCCAGGCACCTA 59.302 50.000 15.89 0.00 38.71 3.08
1668 2221 0.178953 AATCAACTTGCCAGGCACCT 60.179 50.000 15.89 0.00 38.71 4.00
1669 2222 0.681175 AAATCAACTTGCCAGGCACC 59.319 50.000 15.89 0.00 38.71 5.01
1670 2223 2.224018 TGAAAATCAACTTGCCAGGCAC 60.224 45.455 15.89 0.00 38.71 5.01
1671 2224 2.036217 CTGAAAATCAACTTGCCAGGCA 59.964 45.455 11.22 11.22 36.47 4.75
1892 2445 2.649531 TCTCCTCGGCCTTTCAAAAA 57.350 45.000 0.00 0.00 0.00 1.94
1922 2475 1.747355 CCCAAATGAGCAAGCTTCGAT 59.253 47.619 0.00 0.00 0.00 3.59
1954 2507 4.389992 CGTCATCAACATATATGGAGGTGC 59.610 45.833 16.96 9.73 0.00 5.01
1981 2534 0.976641 AGTTGGCTCGATGAAGGTGA 59.023 50.000 0.00 0.00 0.00 4.02
2020 2573 1.982395 TCCTCAAGGATCGCCGTGT 60.982 57.895 0.00 0.00 43.22 4.49
2027 2580 8.056977 AGGTCACCCTAAAATCCTCAAGGATC 62.057 46.154 11.91 0.00 46.58 3.36
2029 2582 5.010881 AGGTCACCCTAAAATCCTCAAGGA 61.011 45.833 0.23 0.23 44.08 3.36
2030 2583 3.267031 AGGTCACCCTAAAATCCTCAAGG 59.733 47.826 0.00 0.00 40.19 3.61
2031 2584 4.226168 AGAGGTCACCCTAAAATCCTCAAG 59.774 45.833 10.86 0.00 42.86 3.02
2032 2585 4.175962 AGAGGTCACCCTAAAATCCTCAA 58.824 43.478 10.86 0.00 42.86 3.02
2033 2586 3.803340 AGAGGTCACCCTAAAATCCTCA 58.197 45.455 10.86 0.00 42.86 3.86
2034 2587 4.345547 CCTAGAGGTCACCCTAAAATCCTC 59.654 50.000 0.00 0.00 42.86 3.71
2035 2588 4.299485 CCTAGAGGTCACCCTAAAATCCT 58.701 47.826 0.00 0.00 42.86 3.24
2036 2589 3.181453 GCCTAGAGGTCACCCTAAAATCC 60.181 52.174 0.00 0.00 42.86 3.01
2037 2590 3.712218 AGCCTAGAGGTCACCCTAAAATC 59.288 47.826 0.00 0.00 42.86 2.17
2038 2591 3.737263 AGCCTAGAGGTCACCCTAAAAT 58.263 45.455 0.00 0.00 42.86 1.82
2039 2592 3.200958 AGCCTAGAGGTCACCCTAAAA 57.799 47.619 0.00 0.00 42.86 1.52
2043 2596 2.225547 TGTAAAGCCTAGAGGTCACCCT 60.226 50.000 0.00 0.00 46.66 4.34
2049 2602 3.248888 AGTTGGTGTAAAGCCTAGAGGT 58.751 45.455 0.00 0.00 37.57 3.85
2054 2607 3.556999 TGCAAAGTTGGTGTAAAGCCTA 58.443 40.909 0.00 0.00 0.00 3.93
2055 2608 2.383855 TGCAAAGTTGGTGTAAAGCCT 58.616 42.857 0.00 0.00 0.00 4.58
2085 2638 1.231963 GGGAATCTAATGGGGTGGGT 58.768 55.000 0.00 0.00 0.00 4.51
2107 2660 2.610727 GCCGCACTATCCCAATCTACTC 60.611 54.545 0.00 0.00 0.00 2.59
2110 2663 1.344438 CTGCCGCACTATCCCAATCTA 59.656 52.381 0.00 0.00 0.00 1.98
2123 2676 0.392863 ACATCATAGTTGCTGCCGCA 60.393 50.000 0.00 0.00 46.24 5.69
2124 2677 0.305922 GACATCATAGTTGCTGCCGC 59.694 55.000 0.00 0.00 0.00 6.53
2125 2678 1.945387 AGACATCATAGTTGCTGCCG 58.055 50.000 0.00 0.00 0.00 5.69
2126 2679 3.012518 ACAAGACATCATAGTTGCTGCC 58.987 45.455 0.00 0.00 0.00 4.85
2127 2680 4.394300 AGAACAAGACATCATAGTTGCTGC 59.606 41.667 0.00 0.00 0.00 5.25
2128 2681 6.148315 TGAAGAACAAGACATCATAGTTGCTG 59.852 38.462 0.00 0.00 0.00 4.41
2129 2682 6.233434 TGAAGAACAAGACATCATAGTTGCT 58.767 36.000 0.00 0.00 0.00 3.91
2130 2683 6.486253 TGAAGAACAAGACATCATAGTTGC 57.514 37.500 0.00 0.00 0.00 4.17
2131 2684 9.552114 GAATTGAAGAACAAGACATCATAGTTG 57.448 33.333 0.00 0.00 42.02 3.16
2132 2685 8.734386 GGAATTGAAGAACAAGACATCATAGTT 58.266 33.333 0.00 0.00 42.02 2.24
2133 2686 7.337942 GGGAATTGAAGAACAAGACATCATAGT 59.662 37.037 0.00 0.00 42.02 2.12
2134 2687 7.555554 AGGGAATTGAAGAACAAGACATCATAG 59.444 37.037 0.00 0.00 42.02 2.23
2135 2688 7.405292 AGGGAATTGAAGAACAAGACATCATA 58.595 34.615 0.00 0.00 42.02 2.15
2136 2689 6.251471 AGGGAATTGAAGAACAAGACATCAT 58.749 36.000 0.00 0.00 42.02 2.45
2137 2690 5.634118 AGGGAATTGAAGAACAAGACATCA 58.366 37.500 0.00 0.00 42.02 3.07
2138 2691 6.385033 CAAGGGAATTGAAGAACAAGACATC 58.615 40.000 0.00 0.00 41.83 3.06
2139 2692 5.279156 GCAAGGGAATTGAAGAACAAGACAT 60.279 40.000 0.00 0.00 41.83 3.06
2140 2693 4.037923 GCAAGGGAATTGAAGAACAAGACA 59.962 41.667 0.00 0.00 41.83 3.41
2141 2694 4.550422 GCAAGGGAATTGAAGAACAAGAC 58.450 43.478 0.00 0.00 41.83 3.01
2142 2695 3.573967 GGCAAGGGAATTGAAGAACAAGA 59.426 43.478 0.00 0.00 41.83 3.02
2143 2696 3.321682 TGGCAAGGGAATTGAAGAACAAG 59.678 43.478 0.00 0.00 41.83 3.16
2144 2697 3.303938 TGGCAAGGGAATTGAAGAACAA 58.696 40.909 0.00 0.00 41.83 2.83
2145 2698 2.892852 CTGGCAAGGGAATTGAAGAACA 59.107 45.455 0.00 0.00 41.83 3.18
2146 2699 2.893489 ACTGGCAAGGGAATTGAAGAAC 59.107 45.455 0.00 0.00 41.83 3.01
2147 2700 3.243359 ACTGGCAAGGGAATTGAAGAA 57.757 42.857 0.00 0.00 41.83 2.52
2148 2701 2.978156 ACTGGCAAGGGAATTGAAGA 57.022 45.000 0.00 0.00 41.83 2.87
2149 2702 2.755103 GGTACTGGCAAGGGAATTGAAG 59.245 50.000 0.00 0.00 41.83 3.02
2150 2703 2.378547 AGGTACTGGCAAGGGAATTGAA 59.621 45.455 0.00 0.00 38.25 2.69
2151 2704 1.992557 AGGTACTGGCAAGGGAATTGA 59.007 47.619 0.00 0.00 38.25 2.57
2152 2705 2.493278 CAAGGTACTGGCAAGGGAATTG 59.507 50.000 0.00 0.00 40.86 2.32
2153 2706 2.557452 CCAAGGTACTGGCAAGGGAATT 60.557 50.000 0.00 0.00 40.86 2.17
2154 2707 1.005924 CCAAGGTACTGGCAAGGGAAT 59.994 52.381 0.00 0.00 40.86 3.01
2155 2708 0.404040 CCAAGGTACTGGCAAGGGAA 59.596 55.000 0.00 0.00 40.86 3.97
2156 2709 1.497309 CCCAAGGTACTGGCAAGGGA 61.497 60.000 0.00 0.00 40.86 4.20
2157 2710 1.000896 CCCAAGGTACTGGCAAGGG 60.001 63.158 0.00 0.00 40.86 3.95
2158 2711 0.112412 AACCCAAGGTACTGGCAAGG 59.888 55.000 0.00 0.00 40.86 3.61
2159 2712 1.247567 CAACCCAAGGTACTGGCAAG 58.752 55.000 0.00 0.00 40.86 4.01
2160 2713 0.553819 ACAACCCAAGGTACTGGCAA 59.446 50.000 0.00 0.00 40.86 4.52
2161 2714 0.109723 GACAACCCAAGGTACTGGCA 59.890 55.000 0.00 0.00 40.86 4.92
2162 2715 0.400594 AGACAACCCAAGGTACTGGC 59.599 55.000 0.00 0.00 40.86 4.85
2163 2716 1.978580 AGAGACAACCCAAGGTACTGG 59.021 52.381 0.00 0.00 40.86 4.00
2164 2717 2.352814 CGAGAGACAACCCAAGGTACTG 60.353 54.545 0.00 0.00 40.86 2.74
2166 2719 1.067071 CCGAGAGACAACCCAAGGTAC 60.067 57.143 0.00 0.00 33.12 3.34
2167 2720 1.263356 CCGAGAGACAACCCAAGGTA 58.737 55.000 0.00 0.00 33.12 3.08
2168 2721 2.058675 CCGAGAGACAACCCAAGGT 58.941 57.895 0.00 0.00 37.65 3.50
2169 2722 1.376037 GCCGAGAGACAACCCAAGG 60.376 63.158 0.00 0.00 0.00 3.61
2170 2723 1.376037 GGCCGAGAGACAACCCAAG 60.376 63.158 0.00 0.00 0.00 3.61
2171 2724 1.415672 AAGGCCGAGAGACAACCCAA 61.416 55.000 0.00 0.00 0.00 4.12
2172 2725 1.827399 GAAGGCCGAGAGACAACCCA 61.827 60.000 0.00 0.00 0.00 4.51
2173 2726 1.079057 GAAGGCCGAGAGACAACCC 60.079 63.158 0.00 0.00 0.00 4.11
2174 2727 1.446272 CGAAGGCCGAGAGACAACC 60.446 63.158 0.00 0.00 41.76 3.77
2175 2728 0.524862 TACGAAGGCCGAGAGACAAC 59.475 55.000 0.00 0.00 41.76 3.32
2176 2729 1.201647 CTTACGAAGGCCGAGAGACAA 59.798 52.381 0.00 0.00 41.76 3.18
2177 2730 0.809385 CTTACGAAGGCCGAGAGACA 59.191 55.000 0.00 0.00 41.76 3.41
2178 2731 0.525882 GCTTACGAAGGCCGAGAGAC 60.526 60.000 0.00 0.00 41.76 3.36
2179 2732 1.807886 GCTTACGAAGGCCGAGAGA 59.192 57.895 0.00 0.00 41.76 3.10
2180 2733 4.403976 GCTTACGAAGGCCGAGAG 57.596 61.111 0.00 0.00 41.76 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.