Multiple sequence alignment - TraesCS6A01G067300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G067300 chr6A 100.000 4946 0 0 1 4946 35828241 35823296 0.000000e+00 9134.0
1 TraesCS6A01G067300 chr6A 81.486 821 108 25 1337 2133 35989916 35989116 6.980000e-178 634.0
2 TraesCS6A01G067300 chr6A 81.463 820 109 24 1337 2133 36055309 36054510 2.510000e-177 632.0
3 TraesCS6A01G067300 chr6A 80.573 314 47 13 2807 3114 36107425 36107120 3.850000e-56 230.0
4 TraesCS6A01G067300 chr6A 78.967 271 55 2 3262 3531 36250570 36250301 3.040000e-42 183.0
5 TraesCS6A01G067300 chr6B 90.147 1634 122 24 610 2235 66699453 66697851 0.000000e+00 2089.0
6 TraesCS6A01G067300 chr6B 89.157 1531 97 24 3199 4703 66696797 66695310 0.000000e+00 1844.0
7 TraesCS6A01G067300 chr6B 81.697 825 123 16 1337 2139 67323093 67322275 0.000000e+00 662.0
8 TraesCS6A01G067300 chr6B 81.929 819 111 20 1335 2133 66755173 66754372 0.000000e+00 658.0
9 TraesCS6A01G067300 chr6B 88.309 479 39 11 2695 3170 66697359 66696895 4.320000e-155 558.0
10 TraesCS6A01G067300 chr6B 84.752 564 28 18 1 532 66699995 66699458 3.410000e-141 512.0
11 TraesCS6A01G067300 chr6B 86.911 382 44 5 2278 2657 66697852 66697475 1.650000e-114 424.0
12 TraesCS6A01G067300 chr6B 91.787 207 16 1 4740 4946 66695238 66695033 2.250000e-73 287.0
13 TraesCS6A01G067300 chr6B 81.919 271 47 2 3262 3531 67408953 67408684 1.390000e-55 228.0
14 TraesCS6A01G067300 chr6B 81.439 264 49 0 3263 3526 66989534 66989271 3.000000e-52 217.0
15 TraesCS6A01G067300 chr6B 79.683 315 49 13 2807 3114 66969544 66969238 3.880000e-51 213.0
16 TraesCS6A01G067300 chr6B 80.827 266 49 2 3262 3526 67227844 67227580 1.800000e-49 207.0
17 TraesCS6A01G067300 chr6B 79.661 295 47 12 2821 3109 68780867 68780580 3.020000e-47 200.0
18 TraesCS6A01G067300 chr6B 75.517 290 59 10 906 1188 66944938 66944654 1.120000e-26 132.0
19 TraesCS6A01G067300 chr6B 93.333 45 0 2 553 597 574023807 574023848 4.130000e-06 63.9
20 TraesCS6A01G067300 chrUn 90.555 1567 108 21 3181 4718 100772357 100773912 0.000000e+00 2037.0
21 TraesCS6A01G067300 chrUn 92.711 1372 95 5 866 2235 100769951 100771319 0.000000e+00 1975.0
22 TraesCS6A01G067300 chrUn 87.835 485 35 11 2695 3170 100771804 100772273 9.360000e-152 547.0
23 TraesCS6A01G067300 chrUn 80.925 692 87 25 1337 2003 323637308 323637979 5.710000e-139 505.0
24 TraesCS6A01G067300 chrUn 80.925 692 87 25 1337 2003 323669164 323669835 5.710000e-139 505.0
25 TraesCS6A01G067300 chrUn 80.925 692 87 25 1337 2003 461527817 461527146 5.710000e-139 505.0
26 TraesCS6A01G067300 chrUn 93.671 316 20 0 1 316 100769595 100769910 1.610000e-129 473.0
27 TraesCS6A01G067300 chrUn 85.379 383 54 2 1337 1718 100490919 100491300 3.590000e-106 396.0
28 TraesCS6A01G067300 chrUn 85.117 383 55 2 1337 1718 100620930 100621311 1.670000e-104 390.0
29 TraesCS6A01G067300 chrUn 80.808 99 16 3 2310 2408 43543324 43543229 1.910000e-09 75.0
30 TraesCS6A01G067300 chr6D 82.209 815 119 15 1337 2129 31753931 31753121 0.000000e+00 678.0
31 TraesCS6A01G067300 chr6D 81.531 823 122 16 1337 2136 31770055 31769240 0.000000e+00 651.0
32 TraesCS6A01G067300 chr2B 81.594 853 113 20 1323 2139 696670765 696671609 0.000000e+00 665.0
33 TraesCS6A01G067300 chr2A 81.406 839 114 20 1323 2124 717137840 717138673 0.000000e+00 647.0
34 TraesCS6A01G067300 chr2D 81.905 420 60 12 1717 2124 579387449 579387864 1.710000e-89 340.0
35 TraesCS6A01G067300 chr2D 96.970 33 0 1 565 597 510224452 510224483 2.000000e-03 54.7
36 TraesCS6A01G067300 chr3A 75.806 124 24 5 2278 2398 616968255 616968375 1.920000e-04 58.4
37 TraesCS6A01G067300 chr3B 100.000 29 0 0 565 593 54595872 54595900 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G067300 chr6A 35823296 35828241 4945 True 9134.000000 9134 100.0000 1 4946 1 chr6A.!!$R1 4945
1 TraesCS6A01G067300 chr6A 35989116 35989916 800 True 634.000000 634 81.4860 1337 2133 1 chr6A.!!$R2 796
2 TraesCS6A01G067300 chr6A 36054510 36055309 799 True 632.000000 632 81.4630 1337 2133 1 chr6A.!!$R3 796
3 TraesCS6A01G067300 chr6B 66695033 66699995 4962 True 952.333333 2089 88.5105 1 4946 6 chr6B.!!$R9 4945
4 TraesCS6A01G067300 chr6B 67322275 67323093 818 True 662.000000 662 81.6970 1337 2139 1 chr6B.!!$R6 802
5 TraesCS6A01G067300 chr6B 66754372 66755173 801 True 658.000000 658 81.9290 1335 2133 1 chr6B.!!$R1 798
6 TraesCS6A01G067300 chrUn 100769595 100773912 4317 False 1258.000000 2037 91.1930 1 4718 4 chrUn.!!$F5 4717
7 TraesCS6A01G067300 chrUn 323637308 323637979 671 False 505.000000 505 80.9250 1337 2003 1 chrUn.!!$F3 666
8 TraesCS6A01G067300 chrUn 323669164 323669835 671 False 505.000000 505 80.9250 1337 2003 1 chrUn.!!$F4 666
9 TraesCS6A01G067300 chrUn 461527146 461527817 671 True 505.000000 505 80.9250 1337 2003 1 chrUn.!!$R2 666
10 TraesCS6A01G067300 chr6D 31753121 31753931 810 True 678.000000 678 82.2090 1337 2129 1 chr6D.!!$R1 792
11 TraesCS6A01G067300 chr6D 31769240 31770055 815 True 651.000000 651 81.5310 1337 2136 1 chr6D.!!$R2 799
12 TraesCS6A01G067300 chr2B 696670765 696671609 844 False 665.000000 665 81.5940 1323 2139 1 chr2B.!!$F1 816
13 TraesCS6A01G067300 chr2A 717137840 717138673 833 False 647.000000 647 81.4060 1323 2124 1 chr2A.!!$F1 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 586 0.105709 TCCCTCCGATCCATGTGCTA 60.106 55.0 0.00 0.00 0.00 3.49 F
1942 2016 0.178953 ACCTGCTGCAAGGAACCAAT 60.179 50.0 20.14 0.00 40.02 3.16 F
2462 2544 0.518195 TAAACTTAAAGCGGCGCCAC 59.482 50.0 30.40 18.62 0.00 5.01 F
2675 2775 0.754587 TGACTTGCCAATGCCACACA 60.755 50.0 0.00 0.00 36.33 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2260 2339 0.541392 AACGCCTAGGCATCATGTCA 59.459 50.000 32.47 0.00 42.06 3.58 R
3210 3454 0.889306 AGGGACGCTCTAGTGTTGTC 59.111 55.000 0.00 9.46 39.12 3.18 R
3784 4056 1.070758 GAAGCACTCCCTGTTGAGACA 59.929 52.381 0.00 0.00 36.22 3.41 R
4057 4335 1.202746 GGAAGAGAGCATCCCCATGAC 60.203 57.143 0.00 0.00 33.66 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.992294 GCCGCGATCGAGCTCTCC 62.992 72.222 21.57 0.00 38.10 3.71
26 27 3.283684 CCGCGATCGAGCTCTCCT 61.284 66.667 21.57 0.00 38.10 3.69
140 156 1.907222 CTGCTGCCCAGATCACCTCA 61.907 60.000 0.00 0.00 44.64 3.86
177 193 3.243501 CCAGCCAATAATGTTCCATTCGG 60.244 47.826 0.00 0.00 0.00 4.30
371 403 8.491331 ACAATTAACATGAATATTTTGCCACC 57.509 30.769 0.00 0.00 0.00 4.61
378 410 7.551585 ACATGAATATTTTGCCACCGAAAATA 58.448 30.769 0.00 0.00 38.81 1.40
391 423 3.065648 ACCGAAAATACACGCTTGTTGTT 59.934 39.130 0.00 0.00 37.15 2.83
416 450 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
417 451 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
418 452 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
419 453 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
420 454 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
421 455 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
422 456 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
423 457 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
424 458 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
425 459 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
426 460 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
427 461 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
433 467 3.438781 TCTCTCTCTCTCTCTCGTTTTGC 59.561 47.826 0.00 0.00 0.00 3.68
446 480 6.016527 TCTCTCGTTTTGCTAAGTCTCAGTTA 60.017 38.462 0.00 0.00 0.00 2.24
449 483 8.467598 TCTCGTTTTGCTAAGTCTCAGTTATAT 58.532 33.333 0.00 0.00 0.00 0.86
450 484 8.407457 TCGTTTTGCTAAGTCTCAGTTATATG 57.593 34.615 0.00 0.00 0.00 1.78
451 485 7.491372 TCGTTTTGCTAAGTCTCAGTTATATGG 59.509 37.037 0.00 0.00 0.00 2.74
455 489 5.221521 TGCTAAGTCTCAGTTATATGGGCAG 60.222 44.000 0.00 0.00 0.00 4.85
456 490 4.696479 AAGTCTCAGTTATATGGGCAGG 57.304 45.455 0.00 0.00 0.00 4.85
457 491 3.658725 AGTCTCAGTTATATGGGCAGGT 58.341 45.455 0.00 0.00 0.00 4.00
458 492 4.040755 AGTCTCAGTTATATGGGCAGGTT 58.959 43.478 0.00 0.00 0.00 3.50
459 493 4.130118 GTCTCAGTTATATGGGCAGGTTG 58.870 47.826 0.00 0.00 0.00 3.77
460 494 2.880890 CTCAGTTATATGGGCAGGTTGC 59.119 50.000 0.00 0.00 44.08 4.17
532 566 3.384702 GCGGCTTGCACTTTTCTAC 57.615 52.632 0.00 0.00 45.45 2.59
533 567 0.875059 GCGGCTTGCACTTTTCTACT 59.125 50.000 0.00 0.00 45.45 2.57
535 569 1.464997 CGGCTTGCACTTTTCTACTCC 59.535 52.381 0.00 0.00 0.00 3.85
536 570 1.813178 GGCTTGCACTTTTCTACTCCC 59.187 52.381 0.00 0.00 0.00 4.30
537 571 2.553247 GGCTTGCACTTTTCTACTCCCT 60.553 50.000 0.00 0.00 0.00 4.20
538 572 2.744741 GCTTGCACTTTTCTACTCCCTC 59.255 50.000 0.00 0.00 0.00 4.30
539 573 3.339141 CTTGCACTTTTCTACTCCCTCC 58.661 50.000 0.00 0.00 0.00 4.30
540 574 1.275291 TGCACTTTTCTACTCCCTCCG 59.725 52.381 0.00 0.00 0.00 4.63
541 575 1.549170 GCACTTTTCTACTCCCTCCGA 59.451 52.381 0.00 0.00 0.00 4.55
542 576 2.168728 GCACTTTTCTACTCCCTCCGAT 59.831 50.000 0.00 0.00 0.00 4.18
543 577 3.738590 GCACTTTTCTACTCCCTCCGATC 60.739 52.174 0.00 0.00 0.00 3.69
544 578 3.032459 ACTTTTCTACTCCCTCCGATCC 58.968 50.000 0.00 0.00 0.00 3.36
545 579 2.840640 TTTCTACTCCCTCCGATCCA 57.159 50.000 0.00 0.00 0.00 3.41
546 580 3.330126 TTTCTACTCCCTCCGATCCAT 57.670 47.619 0.00 0.00 0.00 3.41
547 581 2.294449 TCTACTCCCTCCGATCCATG 57.706 55.000 0.00 0.00 0.00 3.66
548 582 1.499438 TCTACTCCCTCCGATCCATGT 59.501 52.381 0.00 0.00 0.00 3.21
549 583 1.615883 CTACTCCCTCCGATCCATGTG 59.384 57.143 0.00 0.00 0.00 3.21
550 584 1.070445 CTCCCTCCGATCCATGTGC 59.930 63.158 0.00 0.00 0.00 4.57
551 585 1.383109 TCCCTCCGATCCATGTGCT 60.383 57.895 0.00 0.00 0.00 4.40
552 586 0.105709 TCCCTCCGATCCATGTGCTA 60.106 55.000 0.00 0.00 0.00 3.49
553 587 0.758734 CCCTCCGATCCATGTGCTAA 59.241 55.000 0.00 0.00 0.00 3.09
554 588 1.140852 CCCTCCGATCCATGTGCTAAA 59.859 52.381 0.00 0.00 0.00 1.85
555 589 2.487934 CCTCCGATCCATGTGCTAAAG 58.512 52.381 0.00 0.00 0.00 1.85
556 590 2.158900 CCTCCGATCCATGTGCTAAAGT 60.159 50.000 0.00 0.00 0.00 2.66
557 591 3.535561 CTCCGATCCATGTGCTAAAGTT 58.464 45.455 0.00 0.00 0.00 2.66
558 592 3.270027 TCCGATCCATGTGCTAAAGTTG 58.730 45.455 0.00 0.00 0.00 3.16
559 593 3.009723 CCGATCCATGTGCTAAAGTTGT 58.990 45.455 0.00 0.00 0.00 3.32
560 594 4.081365 TCCGATCCATGTGCTAAAGTTGTA 60.081 41.667 0.00 0.00 0.00 2.41
561 595 4.034048 CCGATCCATGTGCTAAAGTTGTAC 59.966 45.833 0.00 0.00 0.00 2.90
562 596 4.870426 CGATCCATGTGCTAAAGTTGTACT 59.130 41.667 0.00 0.00 0.00 2.73
563 597 6.040247 CGATCCATGTGCTAAAGTTGTACTA 58.960 40.000 0.00 0.00 0.00 1.82
564 598 6.701841 CGATCCATGTGCTAAAGTTGTACTAT 59.298 38.462 0.00 0.00 0.00 2.12
565 599 7.865889 CGATCCATGTGCTAAAGTTGTACTATA 59.134 37.037 0.00 0.00 0.00 1.31
566 600 9.542462 GATCCATGTGCTAAAGTTGTACTATAA 57.458 33.333 0.00 0.00 0.00 0.98
567 601 9.899661 ATCCATGTGCTAAAGTTGTACTATAAA 57.100 29.630 0.00 0.00 0.00 1.40
568 602 9.378551 TCCATGTGCTAAAGTTGTACTATAAAG 57.621 33.333 0.00 0.00 0.00 1.85
569 603 8.122952 CCATGTGCTAAAGTTGTACTATAAAGC 58.877 37.037 0.00 0.00 0.00 3.51
570 604 8.664798 CATGTGCTAAAGTTGTACTATAAAGCA 58.335 33.333 0.00 0.05 0.00 3.91
571 605 8.610248 TGTGCTAAAGTTGTACTATAAAGCAA 57.390 30.769 9.74 0.00 0.00 3.91
572 606 8.500773 TGTGCTAAAGTTGTACTATAAAGCAAC 58.499 33.333 9.74 0.00 40.83 4.17
573 607 7.686938 GTGCTAAAGTTGTACTATAAAGCAACG 59.313 37.037 9.74 0.00 43.98 4.10
574 608 7.599621 TGCTAAAGTTGTACTATAAAGCAACGA 59.400 33.333 0.00 0.00 43.98 3.85
575 609 7.896782 GCTAAAGTTGTACTATAAAGCAACGAC 59.103 37.037 0.00 0.00 43.98 4.34
576 610 7.718272 AAAGTTGTACTATAAAGCAACGACA 57.282 32.000 0.00 0.00 43.98 4.35
577 611 7.718272 AAGTTGTACTATAAAGCAACGACAA 57.282 32.000 0.00 0.00 43.98 3.18
578 612 7.347508 AGTTGTACTATAAAGCAACGACAAG 57.652 36.000 0.00 0.00 43.98 3.16
579 613 6.927381 AGTTGTACTATAAAGCAACGACAAGT 59.073 34.615 0.00 0.00 43.98 3.16
580 614 8.084073 AGTTGTACTATAAAGCAACGACAAGTA 58.916 33.333 0.00 0.00 43.98 2.24
581 615 8.702438 GTTGTACTATAAAGCAACGACAAGTAA 58.298 33.333 0.00 0.00 33.15 2.24
582 616 8.991243 TGTACTATAAAGCAACGACAAGTAAT 57.009 30.769 0.00 0.00 0.00 1.89
586 620 9.042008 ACTATAAAGCAACGACAAGTAATATGG 57.958 33.333 0.00 0.00 0.00 2.74
587 621 9.256477 CTATAAAGCAACGACAAGTAATATGGA 57.744 33.333 0.00 0.00 0.00 3.41
588 622 8.677148 ATAAAGCAACGACAAGTAATATGGAT 57.323 30.769 0.00 0.00 0.00 3.41
589 623 6.604735 AAGCAACGACAAGTAATATGGATC 57.395 37.500 0.00 0.00 0.00 3.36
590 624 4.745125 AGCAACGACAAGTAATATGGATCG 59.255 41.667 0.00 0.00 0.00 3.69
591 625 4.084537 GCAACGACAAGTAATATGGATCGG 60.085 45.833 0.00 0.00 32.56 4.18
592 626 5.286438 CAACGACAAGTAATATGGATCGGA 58.714 41.667 0.00 0.00 32.56 4.55
593 627 5.524971 ACGACAAGTAATATGGATCGGAA 57.475 39.130 0.00 0.00 32.56 4.30
594 628 5.529791 ACGACAAGTAATATGGATCGGAAG 58.470 41.667 0.00 0.00 32.56 3.46
595 629 4.923871 CGACAAGTAATATGGATCGGAAGG 59.076 45.833 0.00 0.00 0.00 3.46
596 630 5.228945 ACAAGTAATATGGATCGGAAGGG 57.771 43.478 0.00 0.00 0.00 3.95
597 631 3.983044 AGTAATATGGATCGGAAGGGC 57.017 47.619 0.00 0.00 0.00 5.19
598 632 2.233922 AGTAATATGGATCGGAAGGGCG 59.766 50.000 0.00 0.00 0.00 6.13
599 633 0.324943 AATATGGATCGGAAGGGCGG 59.675 55.000 0.00 0.00 0.00 6.13
600 634 0.544357 ATATGGATCGGAAGGGCGGA 60.544 55.000 0.00 0.00 0.00 5.54
601 635 0.761323 TATGGATCGGAAGGGCGGAA 60.761 55.000 0.00 0.00 0.00 4.30
602 636 2.044806 ATGGATCGGAAGGGCGGAAG 62.045 60.000 0.00 0.00 0.00 3.46
603 637 2.432300 GGATCGGAAGGGCGGAAGA 61.432 63.158 0.00 0.00 0.00 2.87
604 638 1.520666 GATCGGAAGGGCGGAAGAA 59.479 57.895 0.00 0.00 0.00 2.52
605 639 0.530870 GATCGGAAGGGCGGAAGAAG 60.531 60.000 0.00 0.00 0.00 2.85
606 640 1.265454 ATCGGAAGGGCGGAAGAAGT 61.265 55.000 0.00 0.00 0.00 3.01
607 641 1.741770 CGGAAGGGCGGAAGAAGTG 60.742 63.158 0.00 0.00 0.00 3.16
608 642 2.041115 GGAAGGGCGGAAGAAGTGC 61.041 63.158 0.00 0.00 0.00 4.40
629 663 4.546570 GCAGGTTGCGTTTTTCTAAATCT 58.453 39.130 0.00 0.00 31.71 2.40
631 665 5.567915 GCAGGTTGCGTTTTTCTAAATCTAC 59.432 40.000 0.00 0.00 31.71 2.59
632 666 6.084277 CAGGTTGCGTTTTTCTAAATCTACC 58.916 40.000 0.00 0.00 31.48 3.18
634 668 6.263617 AGGTTGCGTTTTTCTAAATCTACCAA 59.736 34.615 0.00 0.00 32.54 3.67
635 669 6.581166 GGTTGCGTTTTTCTAAATCTACCAAG 59.419 38.462 0.00 0.00 31.57 3.61
636 670 7.357303 GTTGCGTTTTTCTAAATCTACCAAGA 58.643 34.615 0.00 0.00 35.80 3.02
637 671 7.499321 TGCGTTTTTCTAAATCTACCAAGAA 57.501 32.000 0.00 0.00 34.73 2.52
639 673 8.573035 TGCGTTTTTCTAAATCTACCAAGAATT 58.427 29.630 0.00 0.00 34.73 2.17
640 674 9.406828 GCGTTTTTCTAAATCTACCAAGAATTT 57.593 29.630 0.00 0.00 34.73 1.82
679 713 6.978659 TGATTGAGACATAGATGAACCGTAAC 59.021 38.462 0.00 0.00 0.00 2.50
683 717 7.383687 TGAGACATAGATGAACCGTAACTTTT 58.616 34.615 0.00 0.00 0.00 2.27
684 718 8.525316 TGAGACATAGATGAACCGTAACTTTTA 58.475 33.333 0.00 0.00 0.00 1.52
685 719 9.530633 GAGACATAGATGAACCGTAACTTTTAT 57.469 33.333 0.00 0.00 0.00 1.40
738 772 7.383102 ACAAGCTTATGATACTTTGGAAGTG 57.617 36.000 0.00 0.00 42.84 3.16
739 773 6.942576 ACAAGCTTATGATACTTTGGAAGTGT 59.057 34.615 0.00 0.00 42.84 3.55
743 777 8.299570 AGCTTATGATACTTTGGAAGTGTTTTG 58.700 33.333 3.70 0.00 42.84 2.44
744 778 8.296713 GCTTATGATACTTTGGAAGTGTTTTGA 58.703 33.333 3.70 0.00 42.84 2.69
751 785 6.799512 ACTTTGGAAGTGTTTTGATGAGAAG 58.200 36.000 0.00 0.00 41.01 2.85
756 790 5.424121 AAGTGTTTTGATGAGAAGTTCGG 57.576 39.130 0.00 0.00 0.00 4.30
759 793 4.272504 GTGTTTTGATGAGAAGTTCGGTGA 59.727 41.667 0.00 0.00 0.00 4.02
766 800 6.276091 TGATGAGAAGTTCGGTGATCAATAG 58.724 40.000 0.00 0.00 0.00 1.73
767 801 5.661056 TGAGAAGTTCGGTGATCAATAGT 57.339 39.130 0.00 0.00 0.00 2.12
770 804 7.426410 TGAGAAGTTCGGTGATCAATAGTATC 58.574 38.462 0.00 0.00 0.00 2.24
771 805 7.068226 TGAGAAGTTCGGTGATCAATAGTATCA 59.932 37.037 0.00 0.00 0.00 2.15
779 817 6.348540 CGGTGATCAATAGTATCATGACTCGA 60.349 42.308 0.00 0.00 35.87 4.04
786 824 8.078596 TCAATAGTATCATGACTCGACAATCTG 58.921 37.037 0.00 0.00 0.00 2.90
791 829 8.079203 AGTATCATGACTCGACAATCTGAATAC 58.921 37.037 0.00 0.00 0.00 1.89
795 833 8.466798 TCATGACTCGACAATCTGAATACTTTA 58.533 33.333 0.00 0.00 0.00 1.85
838 876 9.715121 AAATTTGAAATGTTAGAATGCATGTCT 57.285 25.926 0.00 8.21 32.17 3.41
879 917 7.376615 ACTCACAGTGGTTAGTAGTTTATGAC 58.623 38.462 0.00 0.00 29.87 3.06
891 929 7.875316 AGTAGTTTATGACATATCGCATGTC 57.125 36.000 17.98 17.98 46.28 3.06
903 941 4.558538 ATCGCATGTCTCTAAATTTGGC 57.441 40.909 0.00 0.00 0.00 4.52
941 979 1.236616 TTGCTCTCCATGCAACACCG 61.237 55.000 0.00 0.00 44.24 4.94
966 1004 1.172180 GCCTAACAGGTGTGCAAGCA 61.172 55.000 0.00 0.00 37.80 3.91
983 1021 2.653726 AGCATTGTTCTGTCAACACCA 58.346 42.857 0.00 0.00 0.00 4.17
984 1022 2.620115 AGCATTGTTCTGTCAACACCAG 59.380 45.455 0.00 0.00 0.00 4.00
997 1035 2.618241 CAACACCAGAAAAGCAGCAGTA 59.382 45.455 0.00 0.00 0.00 2.74
998 1036 2.930950 ACACCAGAAAAGCAGCAGTAA 58.069 42.857 0.00 0.00 0.00 2.24
1006 1044 4.157289 AGAAAAGCAGCAGTAACATGATGG 59.843 41.667 0.00 0.00 37.08 3.51
1120 1158 7.201776 CCCATAGTGATAATCTCCTCGATGTAG 60.202 44.444 0.00 0.00 31.20 2.74
1164 1202 4.166725 AGGGAAGCTGGATATCATGTTTCA 59.833 41.667 18.13 2.82 0.00 2.69
1280 1320 5.520748 TCTTCCTTAAGCAGATTTTCCCT 57.479 39.130 0.00 0.00 32.36 4.20
1282 1322 4.927267 TCCTTAAGCAGATTTTCCCTGA 57.073 40.909 0.00 0.00 33.65 3.86
1536 1576 1.888512 TGGAGCCAAATCTTGCAAGAC 59.111 47.619 30.66 17.50 37.98 3.01
1618 1658 0.820871 CACCTGAGCTACCTCCAGAC 59.179 60.000 1.08 0.00 37.29 3.51
1693 1733 7.013178 TCAGATTAACAAGTTGCAACATCAGAA 59.987 33.333 30.11 18.04 0.00 3.02
1698 1738 4.202050 ACAAGTTGCAACATCAGAAGGAAC 60.202 41.667 30.11 0.00 33.27 3.62
1713 1753 5.353678 CAGAAGGAACTGCAAGAGATTAAGG 59.646 44.000 0.00 0.00 40.86 2.69
1857 1927 8.984764 GTATTTTTCACAATTAAAAGTGGGGTC 58.015 33.333 9.83 0.00 36.43 4.46
1936 2010 3.084039 CAAGAAATACCTGCTGCAAGGA 58.916 45.455 20.14 5.41 40.02 3.36
1942 2016 0.178953 ACCTGCTGCAAGGAACCAAT 60.179 50.000 20.14 0.00 40.02 3.16
2082 2156 1.055849 TTGCCACACAAGAGGAGCTA 58.944 50.000 0.00 0.00 33.24 3.32
2156 2235 7.807977 AGATTAATGCATTTAGATTCACCGT 57.192 32.000 18.75 0.00 0.00 4.83
2165 2244 8.995220 TGCATTTAGATTCACCGTATAATTACC 58.005 33.333 0.00 0.00 0.00 2.85
2172 2251 4.613944 TCACCGTATAATTACCTTCTGCG 58.386 43.478 0.00 0.00 0.00 5.18
2175 2254 3.994392 CCGTATAATTACCTTCTGCGCAT 59.006 43.478 12.24 0.00 0.00 4.73
2196 2275 5.699839 CATATAAATGGCCTCCTAAAACGC 58.300 41.667 3.32 0.00 0.00 4.84
2213 2292 2.238521 ACGCCCACTCAAACAATCATT 58.761 42.857 0.00 0.00 0.00 2.57
2248 2327 8.370493 ACATTGACATGTAATATAGTGACTGC 57.630 34.615 0.00 0.00 42.24 4.40
2249 2328 7.442364 ACATTGACATGTAATATAGTGACTGCC 59.558 37.037 0.00 0.00 42.24 4.85
2250 2329 6.731292 TGACATGTAATATAGTGACTGCCT 57.269 37.500 0.00 0.00 0.00 4.75
2251 2330 7.124573 TGACATGTAATATAGTGACTGCCTT 57.875 36.000 0.00 0.00 0.00 4.35
2252 2331 8.245195 TGACATGTAATATAGTGACTGCCTTA 57.755 34.615 0.00 0.00 0.00 2.69
2253 2332 8.870116 TGACATGTAATATAGTGACTGCCTTAT 58.130 33.333 0.00 0.00 0.00 1.73
2266 2345 9.881649 AGTGACTGCCTTATATATAATGACATG 57.118 33.333 10.85 0.00 0.00 3.21
2267 2346 9.875691 GTGACTGCCTTATATATAATGACATGA 57.124 33.333 10.85 0.00 0.00 3.07
2270 2349 9.334947 ACTGCCTTATATATAATGACATGATGC 57.665 33.333 10.85 0.00 0.00 3.91
2271 2350 8.681486 TGCCTTATATATAATGACATGATGCC 57.319 34.615 10.85 0.00 0.00 4.40
2272 2351 8.496916 TGCCTTATATATAATGACATGATGCCT 58.503 33.333 10.85 0.00 0.00 4.75
2277 2356 1.888215 AATGACATGATGCCTAGGCG 58.112 50.000 28.28 16.06 45.51 5.52
2278 2357 0.761187 ATGACATGATGCCTAGGCGT 59.239 50.000 28.83 28.83 45.51 5.68
2306 2388 5.739237 CGGGAATCGTGTTAAAACAAATG 57.261 39.130 0.00 0.00 41.21 2.32
2307 2389 5.216648 CGGGAATCGTGTTAAAACAAATGT 58.783 37.500 0.00 0.00 41.21 2.71
2308 2390 5.116377 CGGGAATCGTGTTAAAACAAATGTG 59.884 40.000 0.00 0.00 41.21 3.21
2333 2415 8.138712 TGTAAATAGGTGCTTAAAAACAACCAG 58.861 33.333 0.00 0.00 0.00 4.00
2342 2424 7.918562 GTGCTTAAAAACAACCAGAACTAATGA 59.081 33.333 0.00 0.00 0.00 2.57
2458 2540 3.799137 TGAACTAAACTTAAAGCGGCG 57.201 42.857 0.51 0.51 0.00 6.46
2459 2541 2.096119 TGAACTAAACTTAAAGCGGCGC 60.096 45.455 26.86 26.86 0.00 6.53
2462 2544 0.518195 TAAACTTAAAGCGGCGCCAC 59.482 50.000 30.40 18.62 0.00 5.01
2482 2564 6.018343 CGCCACCTTTTAACAAAAATGTGAAT 60.018 34.615 15.86 0.00 39.21 2.57
2511 2593 5.725362 ACTATAGAAGTTCACTCCAAGTGC 58.275 41.667 6.78 0.00 45.54 4.40
2540 2623 7.404481 ACACATATATATCATCCATGCCACAA 58.596 34.615 0.00 0.00 0.00 3.33
2543 2626 9.311676 ACATATATATCATCCATGCCACAAAAA 57.688 29.630 0.00 0.00 0.00 1.94
2597 2681 5.662657 TGACATCCATGACTTGATTCCTCTA 59.337 40.000 0.00 0.00 0.00 2.43
2612 2696 7.780064 TGATTCCTCTAGAAGAGAATGACTTG 58.220 38.462 14.04 0.00 45.07 3.16
2616 2700 6.323482 TCCTCTAGAAGAGAATGACTTGATGG 59.677 42.308 5.50 0.00 45.07 3.51
2627 2711 2.299582 TGACTTGATGGGGCATGTTTTG 59.700 45.455 0.00 0.00 0.00 2.44
2645 2729 5.885912 TGTTTTGCTTGGATAGATTAGTCCC 59.114 40.000 0.00 0.00 33.45 4.46
2675 2775 0.754587 TGACTTGCCAATGCCACACA 60.755 50.000 0.00 0.00 36.33 3.72
2683 2783 2.223845 GCCAATGCCACACAATTTTGAC 59.776 45.455 0.00 0.00 0.00 3.18
2704 2868 6.392354 TGACCGGACGGCTATATTTATTTAG 58.608 40.000 9.46 0.00 39.32 1.85
2707 2871 7.263496 ACCGGACGGCTATATTTATTTAGATC 58.737 38.462 9.46 0.00 39.32 2.75
2849 3013 4.823989 GTGGCATCTATTTGCTAATGGAGT 59.176 41.667 11.98 0.00 42.38 3.85
2853 3017 7.229306 TGGCATCTATTTGCTAATGGAGTAAAG 59.771 37.037 11.98 0.00 42.19 1.85
2864 3028 6.238130 GCTAATGGAGTAAAGAATCGTGGTTC 60.238 42.308 0.00 0.00 0.00 3.62
2866 3030 5.160607 TGGAGTAAAGAATCGTGGTTCAT 57.839 39.130 0.00 0.00 0.00 2.57
2869 3033 6.072728 TGGAGTAAAGAATCGTGGTTCATTTG 60.073 38.462 0.00 0.00 0.00 2.32
2922 3092 6.119536 TGTTCTTGTGGTAGAAGTTTCACAT 58.880 36.000 0.00 0.00 39.45 3.21
3037 3209 6.936335 ACAAATGATATCGCTGATATGTCCAA 59.064 34.615 13.40 0.00 35.64 3.53
3057 3229 3.064900 AGAAAGAGCATGGACTGAACC 57.935 47.619 0.00 0.00 0.00 3.62
3062 3234 2.042162 AGAGCATGGACTGAACCCAATT 59.958 45.455 0.00 0.00 37.22 2.32
3166 3338 8.732746 ACACCACCTCATAGATTTGTATTTAC 57.267 34.615 0.00 0.00 0.00 2.01
3170 3342 8.975439 CCACCTCATAGATTTGTATTTACGTAC 58.025 37.037 0.00 0.00 0.00 3.67
3172 3344 8.623903 ACCTCATAGATTTGTATTTACGTACGA 58.376 33.333 24.41 0.00 0.00 3.43
3173 3345 9.454585 CCTCATAGATTTGTATTTACGTACGAA 57.545 33.333 24.41 7.11 33.65 3.85
3224 3468 5.700846 TCTTAAGAAGACAACACTAGAGCG 58.299 41.667 1.68 0.00 31.20 5.03
3228 3472 0.889306 AGACAACACTAGAGCGTCCC 59.111 55.000 0.00 0.00 0.00 4.46
3249 3494 5.422650 TCCCTAGAGAAAGCTTACCTTCTTC 59.577 44.000 0.00 0.00 31.99 2.87
3257 3502 8.159229 AGAAAGCTTACCTTCTTCCCTTTATA 57.841 34.615 0.00 0.00 31.99 0.98
3279 3524 2.880963 GCAGTGGGCAACTTTGTTTA 57.119 45.000 0.00 0.00 43.97 2.01
3281 3526 2.863740 GCAGTGGGCAACTTTGTTTAAC 59.136 45.455 0.00 0.00 43.97 2.01
3322 3567 1.803334 TGGTTGTCTGGTAATCACGC 58.197 50.000 0.00 0.00 0.00 5.34
3389 3634 3.716601 AGCACCACTTTTGTTTATGCAC 58.283 40.909 0.00 0.00 35.55 4.57
3461 3706 2.300152 GTCTCGGATTATCTCATGCCCA 59.700 50.000 0.00 0.00 0.00 5.36
3556 3806 4.895224 ATGAAATGCATGTACAGCTGAG 57.105 40.909 23.35 5.65 35.42 3.35
3738 4010 4.625963 ACCTAAAAGAGAGCCCTCATAGT 58.374 43.478 0.00 0.00 41.87 2.12
3759 4031 2.270850 GCGGAGGGGCACATGTTA 59.729 61.111 0.00 0.00 0.00 2.41
3784 4056 1.911357 TGATTGCAGATGAGTGGGAGT 59.089 47.619 0.00 0.00 0.00 3.85
3858 4130 3.745975 TCATTCGAGCGTCACTCAATTTT 59.254 39.130 0.00 0.00 46.63 1.82
3939 4214 5.163405 TGAGGATTACACCAGAATGCTACTC 60.163 44.000 0.00 0.00 35.38 2.59
3940 4215 4.965532 AGGATTACACCAGAATGCTACTCT 59.034 41.667 0.00 0.00 33.68 3.24
3941 4216 5.426833 AGGATTACACCAGAATGCTACTCTT 59.573 40.000 0.00 0.00 33.68 2.85
4057 4335 1.479389 GGGAGGCTAATCAATGGGTGG 60.479 57.143 0.00 0.00 0.00 4.61
4088 4366 1.909986 GCTCTCTTCCCTACAAACCCT 59.090 52.381 0.00 0.00 0.00 4.34
4235 4516 8.831715 AATTATTTCAACTGAACCATTCCAAC 57.168 30.769 0.00 0.00 33.13 3.77
4236 4517 4.664150 TTTCAACTGAACCATTCCAACC 57.336 40.909 0.00 0.00 33.13 3.77
4237 4518 3.304911 TCAACTGAACCATTCCAACCA 57.695 42.857 0.00 0.00 0.00 3.67
4238 4519 3.843422 TCAACTGAACCATTCCAACCAT 58.157 40.909 0.00 0.00 0.00 3.55
4239 4520 3.826157 TCAACTGAACCATTCCAACCATC 59.174 43.478 0.00 0.00 0.00 3.51
4240 4521 2.436417 ACTGAACCATTCCAACCATCG 58.564 47.619 0.00 0.00 0.00 3.84
4241 4522 2.039746 ACTGAACCATTCCAACCATCGA 59.960 45.455 0.00 0.00 0.00 3.59
4242 4523 2.679837 CTGAACCATTCCAACCATCGAG 59.320 50.000 0.00 0.00 0.00 4.04
4243 4524 2.304470 TGAACCATTCCAACCATCGAGA 59.696 45.455 0.00 0.00 0.00 4.04
4244 4525 2.698855 ACCATTCCAACCATCGAGAG 57.301 50.000 0.00 0.00 0.00 3.20
4328 4618 6.480763 TGCCAACTAATCAGACCAAGATTTA 58.519 36.000 0.00 0.00 37.02 1.40
4331 4621 8.303876 GCCAACTAATCAGACCAAGATTTAAAA 58.696 33.333 0.00 0.00 37.02 1.52
4374 4664 4.591072 CCCAAACTTTAAGAATCCCCAACA 59.409 41.667 0.00 0.00 0.00 3.33
4412 4702 9.822185 ATATAACCAAAATCATCAAAGCTTTCC 57.178 29.630 9.23 0.00 0.00 3.13
4470 4760 2.185387 CCCATTATCCCTACCCCTACG 58.815 57.143 0.00 0.00 0.00 3.51
4486 4776 0.986019 TACGTCCTCCCCATGGCAAT 60.986 55.000 6.09 0.00 0.00 3.56
4510 4804 2.746375 GCCCATCCCATCCACGAGT 61.746 63.158 0.00 0.00 0.00 4.18
4548 4843 4.722700 GGGCCACATGGTGCGAGT 62.723 66.667 4.39 0.00 37.57 4.18
4576 4871 1.662446 CGACTAACGGTGGTTGCGT 60.662 57.895 0.00 0.00 36.90 5.24
4670 4965 0.865769 GGGTTAGTGACGTGCAACAG 59.134 55.000 0.00 0.00 35.74 3.16
4671 4966 1.539496 GGGTTAGTGACGTGCAACAGA 60.539 52.381 0.00 0.00 35.74 3.41
4673 4968 1.525619 GTTAGTGACGTGCAACAGACC 59.474 52.381 0.00 0.00 35.74 3.85
4674 4969 0.747852 TAGTGACGTGCAACAGACCA 59.252 50.000 0.00 0.00 35.74 4.02
4675 4970 0.107897 AGTGACGTGCAACAGACCAA 60.108 50.000 0.00 0.00 35.74 3.67
4676 4971 0.027586 GTGACGTGCAACAGACCAAC 59.972 55.000 0.00 0.00 35.74 3.77
4677 4972 0.391793 TGACGTGCAACAGACCAACA 60.392 50.000 0.00 0.00 35.74 3.33
4678 4973 0.304705 GACGTGCAACAGACCAACAG 59.695 55.000 0.00 0.00 35.74 3.16
4679 4974 0.392461 ACGTGCAACAGACCAACAGT 60.392 50.000 0.00 0.00 35.74 3.55
4680 4975 0.304705 CGTGCAACAGACCAACAGTC 59.695 55.000 0.00 0.00 46.71 3.51
4709 5049 1.687297 GAAGCCTAAGGACTCCCCCG 61.687 65.000 0.00 0.00 34.66 5.73
4722 5062 2.125912 CCCCGAACTCAGCTCGTG 60.126 66.667 0.00 0.00 34.46 4.35
4726 5066 0.240145 CCGAACTCAGCTCGTGTGTA 59.760 55.000 0.00 0.00 32.47 2.90
4730 5070 1.251527 ACTCAGCTCGTGTGTAGGGG 61.252 60.000 0.00 0.00 30.94 4.79
4791 5131 1.286248 ACCTCACCATAACCCCACTC 58.714 55.000 0.00 0.00 0.00 3.51
4792 5132 0.546598 CCTCACCATAACCCCACTCC 59.453 60.000 0.00 0.00 0.00 3.85
4824 5164 8.780977 TCTCTCTCATCTATCTATTCTAGCCAT 58.219 37.037 0.00 0.00 0.00 4.40
4825 5165 8.750515 TCTCTCATCTATCTATTCTAGCCATG 57.249 38.462 0.00 0.00 0.00 3.66
4830 5170 5.093677 TCTATCTATTCTAGCCATGCCCAA 58.906 41.667 0.00 0.00 0.00 4.12
4837 5177 0.897863 TAGCCATGCCCAACACAACC 60.898 55.000 0.00 0.00 0.00 3.77
4857 5197 2.476199 CTCATTGTTCCCCCTCTCTCT 58.524 52.381 0.00 0.00 0.00 3.10
4859 5199 1.488393 CATTGTTCCCCCTCTCTCTCC 59.512 57.143 0.00 0.00 0.00 3.71
4876 5216 4.724293 TCTCTCCTCTATCTCTTCCAGACA 59.276 45.833 0.00 0.00 32.26 3.41
4880 5220 3.640498 CCTCTATCTCTTCCAGACATGCA 59.360 47.826 0.00 0.00 32.26 3.96
4882 5222 5.273674 TCTATCTCTTCCAGACATGCAAG 57.726 43.478 0.00 0.00 32.26 4.01
4918 5258 2.125912 GCGAGCGGTGTGATGAGT 60.126 61.111 0.00 0.00 0.00 3.41
4940 5280 1.464023 GGATGACACACAAATCGCACG 60.464 52.381 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.170260 GAGAGGAGAGCTCGATCGCG 62.170 65.000 11.09 5.24 39.35 5.87
25 26 2.353803 CCCCGCGAATTTATAGGGAGAG 60.354 54.545 8.23 0.00 44.70 3.20
26 27 1.621814 CCCCGCGAATTTATAGGGAGA 59.378 52.381 8.23 0.00 44.70 3.71
140 156 0.250513 GCTGGACGGAGAAGGACAAT 59.749 55.000 0.00 0.00 0.00 2.71
214 230 2.498885 GGGCAGAAGAAAGCATTTGGAT 59.501 45.455 0.00 0.00 39.27 3.41
279 295 1.407618 ACAGTTATCGGACAGCGCATA 59.592 47.619 11.47 0.00 0.00 3.14
327 359 7.724305 AATTGTTGTGTTGTACGAGAACTAT 57.276 32.000 0.00 0.00 29.56 2.12
367 399 1.533731 ACAAGCGTGTATTTTCGGTGG 59.466 47.619 2.53 0.00 35.72 4.61
371 403 5.905181 AGTAAACAACAAGCGTGTATTTTCG 59.095 36.000 16.28 1.97 36.80 3.46
378 410 3.793559 AGAGAGTAAACAACAAGCGTGT 58.206 40.909 0.00 0.00 40.75 4.49
391 423 6.436027 AGAGAGAGAGAGAGAGAGAGAGTAA 58.564 44.000 0.00 0.00 0.00 2.24
416 450 5.054390 ACTTAGCAAAACGAGAGAGAGAG 57.946 43.478 0.00 0.00 0.00 3.20
417 451 4.762765 AGACTTAGCAAAACGAGAGAGAGA 59.237 41.667 0.00 0.00 0.00 3.10
418 452 5.054390 AGACTTAGCAAAACGAGAGAGAG 57.946 43.478 0.00 0.00 0.00 3.20
419 453 4.519350 TGAGACTTAGCAAAACGAGAGAGA 59.481 41.667 0.00 0.00 0.00 3.10
420 454 4.799678 TGAGACTTAGCAAAACGAGAGAG 58.200 43.478 0.00 0.00 0.00 3.20
421 455 4.278669 ACTGAGACTTAGCAAAACGAGAGA 59.721 41.667 0.00 0.00 0.00 3.10
422 456 4.551388 ACTGAGACTTAGCAAAACGAGAG 58.449 43.478 0.00 0.00 0.00 3.20
423 457 4.585955 ACTGAGACTTAGCAAAACGAGA 57.414 40.909 0.00 0.00 0.00 4.04
424 458 6.952935 ATAACTGAGACTTAGCAAAACGAG 57.047 37.500 0.00 0.00 0.00 4.18
425 459 7.491372 CCATATAACTGAGACTTAGCAAAACGA 59.509 37.037 0.00 0.00 0.00 3.85
426 460 7.254455 CCCATATAACTGAGACTTAGCAAAACG 60.254 40.741 0.00 0.00 0.00 3.60
427 461 7.467403 GCCCATATAACTGAGACTTAGCAAAAC 60.467 40.741 0.00 0.00 0.00 2.43
433 467 5.305644 ACCTGCCCATATAACTGAGACTTAG 59.694 44.000 0.00 0.00 0.00 2.18
492 526 7.642669 CCGCATACTGTTCTGAATTTATTGAT 58.357 34.615 0.00 0.00 0.00 2.57
515 549 1.464997 GGAGTAGAAAAGTGCAAGCCG 59.535 52.381 0.00 0.00 0.00 5.52
529 563 1.615883 CACATGGATCGGAGGGAGTAG 59.384 57.143 0.00 0.00 0.00 2.57
532 566 1.070445 GCACATGGATCGGAGGGAG 59.930 63.158 0.00 0.00 0.00 4.30
533 567 0.105709 TAGCACATGGATCGGAGGGA 60.106 55.000 0.00 0.00 0.00 4.20
535 569 2.158900 ACTTTAGCACATGGATCGGAGG 60.159 50.000 0.00 0.00 0.00 4.30
536 570 3.185246 ACTTTAGCACATGGATCGGAG 57.815 47.619 0.00 0.00 0.00 4.63
537 571 3.270027 CAACTTTAGCACATGGATCGGA 58.730 45.455 0.00 0.00 0.00 4.55
538 572 3.009723 ACAACTTTAGCACATGGATCGG 58.990 45.455 0.00 0.00 0.00 4.18
539 573 4.870426 AGTACAACTTTAGCACATGGATCG 59.130 41.667 0.00 0.00 0.00 3.69
540 574 9.542462 TTATAGTACAACTTTAGCACATGGATC 57.458 33.333 0.00 0.00 0.00 3.36
541 575 9.899661 TTTATAGTACAACTTTAGCACATGGAT 57.100 29.630 0.00 0.00 0.00 3.41
542 576 9.378551 CTTTATAGTACAACTTTAGCACATGGA 57.621 33.333 0.00 0.00 0.00 3.41
543 577 8.122952 GCTTTATAGTACAACTTTAGCACATGG 58.877 37.037 0.00 0.00 0.00 3.66
544 578 8.664798 TGCTTTATAGTACAACTTTAGCACATG 58.335 33.333 0.00 0.00 0.00 3.21
545 579 8.786826 TGCTTTATAGTACAACTTTAGCACAT 57.213 30.769 0.00 0.00 0.00 3.21
546 580 8.500773 GTTGCTTTATAGTACAACTTTAGCACA 58.499 33.333 0.00 0.00 39.39 4.57
547 581 7.686938 CGTTGCTTTATAGTACAACTTTAGCAC 59.313 37.037 0.00 0.00 40.13 4.40
548 582 7.599621 TCGTTGCTTTATAGTACAACTTTAGCA 59.400 33.333 0.00 0.00 40.13 3.49
549 583 7.896782 GTCGTTGCTTTATAGTACAACTTTAGC 59.103 37.037 0.00 0.00 40.13 3.09
550 584 8.918658 TGTCGTTGCTTTATAGTACAACTTTAG 58.081 33.333 0.00 0.00 40.13 1.85
551 585 8.815141 TGTCGTTGCTTTATAGTACAACTTTA 57.185 30.769 0.00 0.00 40.13 1.85
552 586 7.718272 TGTCGTTGCTTTATAGTACAACTTT 57.282 32.000 0.00 0.00 40.13 2.66
553 587 7.440255 ACTTGTCGTTGCTTTATAGTACAACTT 59.560 33.333 0.00 0.00 40.13 2.66
554 588 6.927381 ACTTGTCGTTGCTTTATAGTACAACT 59.073 34.615 0.00 0.00 40.13 3.16
555 589 7.113704 ACTTGTCGTTGCTTTATAGTACAAC 57.886 36.000 0.00 0.00 39.16 3.32
556 590 8.815141 TTACTTGTCGTTGCTTTATAGTACAA 57.185 30.769 0.00 0.00 0.00 2.41
557 591 8.991243 ATTACTTGTCGTTGCTTTATAGTACA 57.009 30.769 0.00 0.00 0.00 2.90
560 594 9.042008 CCATATTACTTGTCGTTGCTTTATAGT 57.958 33.333 0.00 0.00 0.00 2.12
561 595 9.256477 TCCATATTACTTGTCGTTGCTTTATAG 57.744 33.333 0.00 0.00 0.00 1.31
562 596 9.772973 ATCCATATTACTTGTCGTTGCTTTATA 57.227 29.630 0.00 0.00 0.00 0.98
563 597 8.677148 ATCCATATTACTTGTCGTTGCTTTAT 57.323 30.769 0.00 0.00 0.00 1.40
564 598 7.042992 CGATCCATATTACTTGTCGTTGCTTTA 60.043 37.037 0.00 0.00 0.00 1.85
565 599 6.238103 CGATCCATATTACTTGTCGTTGCTTT 60.238 38.462 0.00 0.00 0.00 3.51
566 600 5.234329 CGATCCATATTACTTGTCGTTGCTT 59.766 40.000 0.00 0.00 0.00 3.91
567 601 4.745125 CGATCCATATTACTTGTCGTTGCT 59.255 41.667 0.00 0.00 0.00 3.91
568 602 4.084537 CCGATCCATATTACTTGTCGTTGC 60.085 45.833 0.00 0.00 0.00 4.17
569 603 5.286438 TCCGATCCATATTACTTGTCGTTG 58.714 41.667 0.00 0.00 0.00 4.10
570 604 5.524971 TCCGATCCATATTACTTGTCGTT 57.475 39.130 0.00 0.00 0.00 3.85
571 605 5.509163 CCTTCCGATCCATATTACTTGTCGT 60.509 44.000 0.00 0.00 0.00 4.34
572 606 4.923871 CCTTCCGATCCATATTACTTGTCG 59.076 45.833 0.00 0.00 0.00 4.35
573 607 5.238583 CCCTTCCGATCCATATTACTTGTC 58.761 45.833 0.00 0.00 0.00 3.18
574 608 4.505039 GCCCTTCCGATCCATATTACTTGT 60.505 45.833 0.00 0.00 0.00 3.16
575 609 4.003648 GCCCTTCCGATCCATATTACTTG 58.996 47.826 0.00 0.00 0.00 3.16
576 610 3.306780 CGCCCTTCCGATCCATATTACTT 60.307 47.826 0.00 0.00 0.00 2.24
577 611 2.233922 CGCCCTTCCGATCCATATTACT 59.766 50.000 0.00 0.00 0.00 2.24
578 612 2.618053 CGCCCTTCCGATCCATATTAC 58.382 52.381 0.00 0.00 0.00 1.89
579 613 1.553248 CCGCCCTTCCGATCCATATTA 59.447 52.381 0.00 0.00 0.00 0.98
580 614 0.324943 CCGCCCTTCCGATCCATATT 59.675 55.000 0.00 0.00 0.00 1.28
581 615 0.544357 TCCGCCCTTCCGATCCATAT 60.544 55.000 0.00 0.00 0.00 1.78
582 616 0.761323 TTCCGCCCTTCCGATCCATA 60.761 55.000 0.00 0.00 0.00 2.74
583 617 2.044806 CTTCCGCCCTTCCGATCCAT 62.045 60.000 0.00 0.00 0.00 3.41
584 618 2.685743 TTCCGCCCTTCCGATCCA 60.686 61.111 0.00 0.00 0.00 3.41
585 619 1.968050 TTCTTCCGCCCTTCCGATCC 61.968 60.000 0.00 0.00 0.00 3.36
586 620 0.530870 CTTCTTCCGCCCTTCCGATC 60.531 60.000 0.00 0.00 0.00 3.69
587 621 1.265454 ACTTCTTCCGCCCTTCCGAT 61.265 55.000 0.00 0.00 0.00 4.18
588 622 1.911766 ACTTCTTCCGCCCTTCCGA 60.912 57.895 0.00 0.00 0.00 4.55
589 623 1.741770 CACTTCTTCCGCCCTTCCG 60.742 63.158 0.00 0.00 0.00 4.30
590 624 2.041115 GCACTTCTTCCGCCCTTCC 61.041 63.158 0.00 0.00 0.00 3.46
591 625 1.301677 CTGCACTTCTTCCGCCCTTC 61.302 60.000 0.00 0.00 0.00 3.46
592 626 1.302832 CTGCACTTCTTCCGCCCTT 60.303 57.895 0.00 0.00 0.00 3.95
593 627 2.348998 CTGCACTTCTTCCGCCCT 59.651 61.111 0.00 0.00 0.00 5.19
594 628 2.747855 CCTGCACTTCTTCCGCCC 60.748 66.667 0.00 0.00 0.00 6.13
595 629 1.600916 AACCTGCACTTCTTCCGCC 60.601 57.895 0.00 0.00 0.00 6.13
596 630 1.576421 CAACCTGCACTTCTTCCGC 59.424 57.895 0.00 0.00 0.00 5.54
597 631 1.576421 GCAACCTGCACTTCTTCCG 59.424 57.895 0.00 0.00 44.26 4.30
598 632 1.166531 ACGCAACCTGCACTTCTTCC 61.167 55.000 0.00 0.00 45.36 3.46
599 633 0.663153 AACGCAACCTGCACTTCTTC 59.337 50.000 0.00 0.00 45.36 2.87
600 634 1.102978 AAACGCAACCTGCACTTCTT 58.897 45.000 0.00 0.00 45.36 2.52
601 635 1.102978 AAAACGCAACCTGCACTTCT 58.897 45.000 0.00 0.00 45.36 2.85
602 636 1.852280 GAAAAACGCAACCTGCACTTC 59.148 47.619 0.00 0.00 45.36 3.01
603 637 1.476488 AGAAAAACGCAACCTGCACTT 59.524 42.857 0.00 0.00 45.36 3.16
604 638 1.102978 AGAAAAACGCAACCTGCACT 58.897 45.000 0.00 0.00 45.36 4.40
605 639 2.766970 TAGAAAAACGCAACCTGCAC 57.233 45.000 0.00 0.00 45.36 4.57
606 640 3.784701 TTTAGAAAAACGCAACCTGCA 57.215 38.095 0.00 0.00 45.36 4.41
607 641 4.546570 AGATTTAGAAAAACGCAACCTGC 58.453 39.130 0.00 0.00 40.69 4.85
608 642 6.084277 GGTAGATTTAGAAAAACGCAACCTG 58.916 40.000 0.00 0.00 0.00 4.00
631 665 9.895138 ATCAATTGGGATTTTCTAAATTCTTGG 57.105 29.630 5.42 0.00 0.00 3.61
649 683 7.519488 CGGTTCATCTATGTCTCAATCAATTGG 60.519 40.741 5.42 0.00 38.30 3.16
693 727 9.030301 GCTTGTAATGTTTTGTTAACACATCTT 57.970 29.630 8.07 1.78 32.37 2.40
694 728 8.413229 AGCTTGTAATGTTTTGTTAACACATCT 58.587 29.630 8.07 0.00 32.37 2.90
695 729 8.574196 AGCTTGTAATGTTTTGTTAACACATC 57.426 30.769 8.07 1.72 32.37 3.06
696 730 8.940768 AAGCTTGTAATGTTTTGTTAACACAT 57.059 26.923 8.07 6.09 32.37 3.21
715 749 7.383102 ACACTTCCAAAGTATCATAAGCTTG 57.617 36.000 9.86 0.00 40.46 4.01
723 757 7.719193 TCTCATCAAAACACTTCCAAAGTATCA 59.281 33.333 0.00 0.00 40.46 2.15
728 762 6.799512 ACTTCTCATCAAAACACTTCCAAAG 58.200 36.000 0.00 0.00 0.00 2.77
738 772 5.179368 TGATCACCGAACTTCTCATCAAAAC 59.821 40.000 0.00 0.00 0.00 2.43
739 773 5.304778 TGATCACCGAACTTCTCATCAAAA 58.695 37.500 0.00 0.00 0.00 2.44
743 777 6.276847 ACTATTGATCACCGAACTTCTCATC 58.723 40.000 0.00 0.00 0.00 2.92
744 778 6.227298 ACTATTGATCACCGAACTTCTCAT 57.773 37.500 0.00 0.00 0.00 2.90
751 785 7.148641 AGTCATGATACTATTGATCACCGAAC 58.851 38.462 0.00 0.00 36.18 3.95
756 790 7.363431 TGTCGAGTCATGATACTATTGATCAC 58.637 38.462 0.00 0.00 36.18 3.06
759 793 8.801299 AGATTGTCGAGTCATGATACTATTGAT 58.199 33.333 0.00 0.00 0.00 2.57
766 800 8.079203 AGTATTCAGATTGTCGAGTCATGATAC 58.921 37.037 0.00 0.00 0.00 2.24
767 801 8.171164 AGTATTCAGATTGTCGAGTCATGATA 57.829 34.615 0.00 0.00 0.00 2.15
770 804 7.531280 AAAGTATTCAGATTGTCGAGTCATG 57.469 36.000 0.00 0.00 0.00 3.07
771 805 8.251026 TGTAAAGTATTCAGATTGTCGAGTCAT 58.749 33.333 0.00 0.00 0.00 3.06
814 852 9.362539 GAAGACATGCATTCTAACATTTCAAAT 57.637 29.630 0.00 0.00 0.00 2.32
817 855 7.451501 TGAAGACATGCATTCTAACATTTCA 57.548 32.000 0.00 1.25 0.00 2.69
823 861 7.533426 ACAATCTTGAAGACATGCATTCTAAC 58.467 34.615 0.00 3.42 0.00 2.34
826 864 6.015688 ACAACAATCTTGAAGACATGCATTCT 60.016 34.615 0.00 0.70 0.00 2.40
832 870 8.344831 TGAGTTAACAACAATCTTGAAGACATG 58.655 33.333 8.61 2.57 0.00 3.21
837 875 7.641411 CACTGTGAGTTAACAACAATCTTGAAG 59.359 37.037 8.61 1.00 0.00 3.02
838 876 7.415095 CCACTGTGAGTTAACAACAATCTTGAA 60.415 37.037 9.86 0.00 0.00 2.69
879 917 6.072838 AGCCAAATTTAGAGACATGCGATATG 60.073 38.462 0.00 0.00 0.00 1.78
891 929 9.528018 TTTGTAACAAGAAAGCCAAATTTAGAG 57.472 29.630 0.00 0.00 0.00 2.43
903 941 7.428826 AGAGCAAATCCTTTGTAACAAGAAAG 58.571 34.615 1.97 0.00 42.56 2.62
931 969 2.045926 GCCCTCTCGGTGTTGCAT 60.046 61.111 0.00 0.00 0.00 3.96
941 979 0.250513 CACACCTGTTAGGCCCTCTC 59.749 60.000 0.00 0.00 39.63 3.20
973 1011 1.405105 GCTGCTTTTCTGGTGTTGACA 59.595 47.619 0.00 0.00 0.00 3.58
974 1012 1.405105 TGCTGCTTTTCTGGTGTTGAC 59.595 47.619 0.00 0.00 0.00 3.18
983 1021 4.157289 CCATCATGTTACTGCTGCTTTTCT 59.843 41.667 0.00 0.00 0.00 2.52
984 1022 4.418392 CCATCATGTTACTGCTGCTTTTC 58.582 43.478 0.00 0.00 0.00 2.29
997 1035 3.770388 TGATCAACAATGGCCATCATGTT 59.230 39.130 24.16 24.16 35.99 2.71
998 1036 3.131577 GTGATCAACAATGGCCATCATGT 59.868 43.478 21.08 18.13 35.99 3.21
1120 1158 0.106318 ATCAGCCTCATGGAAAGGGC 60.106 55.000 1.42 0.00 44.38 5.19
1257 1297 5.711976 CAGGGAAAATCTGCTTAAGGAAGAA 59.288 40.000 4.29 0.00 32.48 2.52
1321 1361 2.283529 GCCACGGTGAGGAGAAGGA 61.284 63.158 10.28 0.00 0.00 3.36
1536 1576 3.195610 TGGTCTAGTGACTGCCTTACATG 59.804 47.826 0.00 0.00 42.54 3.21
1618 1658 0.673644 CGTGTTCCTAGTGGGCAAGG 60.674 60.000 0.00 0.00 34.39 3.61
1693 1733 3.054065 CCCCTTAATCTCTTGCAGTTCCT 60.054 47.826 0.00 0.00 0.00 3.36
1698 1738 4.407296 AGAGTACCCCTTAATCTCTTGCAG 59.593 45.833 0.00 0.00 28.60 4.41
1713 1753 9.642343 AAAATTAATAATGGAAGGAGAGTACCC 57.358 33.333 0.00 0.00 0.00 3.69
1765 1830 7.152645 AGTTCTAGCGTTTCTCTTATCAACAA 58.847 34.615 0.00 0.00 0.00 2.83
1767 1832 7.030768 AGAGTTCTAGCGTTTCTCTTATCAAC 58.969 38.462 0.00 0.00 32.52 3.18
1837 1907 6.739331 AATGACCCCACTTTTAATTGTGAA 57.261 33.333 9.16 0.00 36.38 3.18
1838 1908 6.739331 AAATGACCCCACTTTTAATTGTGA 57.261 33.333 9.16 0.00 36.38 3.58
1936 2010 7.309744 CCACATGTACCATTTCACTAATTGGTT 60.310 37.037 0.00 0.00 43.55 3.67
1942 2016 4.013728 GGCCACATGTACCATTTCACTAA 58.986 43.478 11.33 0.00 0.00 2.24
2034 2108 7.997223 AGATCAAAGATGTCATCCACAATGTAT 59.003 33.333 9.29 0.00 38.97 2.29
2149 2228 5.045215 CGCAGAAGGTAATTATACGGTGAA 58.955 41.667 0.00 0.00 32.51 3.18
2163 2242 2.554032 GCCATTTATATGCGCAGAAGGT 59.446 45.455 18.32 0.00 31.94 3.50
2165 2244 2.816087 AGGCCATTTATATGCGCAGAAG 59.184 45.455 18.32 0.43 32.73 2.85
2167 2246 2.426522 GAGGCCATTTATATGCGCAGA 58.573 47.619 18.32 13.18 32.73 4.26
2172 2251 5.699839 CGTTTTAGGAGGCCATTTATATGC 58.300 41.667 5.01 0.00 0.00 3.14
2175 2254 4.139038 GGCGTTTTAGGAGGCCATTTATA 58.861 43.478 5.01 0.00 46.92 0.98
2182 2261 2.044555 GTGGGCGTTTTAGGAGGCC 61.045 63.158 0.00 0.00 46.98 5.19
2196 2275 7.212274 AGAAAAAGAATGATTGTTTGAGTGGG 58.788 34.615 0.81 0.00 0.00 4.61
2240 2319 9.881649 CATGTCATTATATATAAGGCAGTCACT 57.118 33.333 11.44 0.00 0.00 3.41
2241 2320 9.875691 TCATGTCATTATATATAAGGCAGTCAC 57.124 33.333 11.44 5.84 0.00 3.67
2244 2323 9.334947 GCATCATGTCATTATATATAAGGCAGT 57.665 33.333 11.44 0.00 0.00 4.40
2245 2324 8.781196 GGCATCATGTCATTATATATAAGGCAG 58.219 37.037 11.44 7.80 0.00 4.85
2246 2325 8.496916 AGGCATCATGTCATTATATATAAGGCA 58.503 33.333 11.44 12.34 0.00 4.75
2247 2326 8.915057 AGGCATCATGTCATTATATATAAGGC 57.085 34.615 11.44 7.98 0.00 4.35
2251 2330 8.306761 CGCCTAGGCATCATGTCATTATATATA 58.693 37.037 32.47 0.00 42.06 0.86
2252 2331 7.157347 CGCCTAGGCATCATGTCATTATATAT 58.843 38.462 32.47 0.00 42.06 0.86
2253 2332 6.098266 ACGCCTAGGCATCATGTCATTATATA 59.902 38.462 32.47 0.00 42.06 0.86
2254 2333 5.104776 ACGCCTAGGCATCATGTCATTATAT 60.105 40.000 32.47 0.00 42.06 0.86
2255 2334 4.222810 ACGCCTAGGCATCATGTCATTATA 59.777 41.667 32.47 0.00 42.06 0.98
2256 2335 3.008375 ACGCCTAGGCATCATGTCATTAT 59.992 43.478 32.47 0.00 42.06 1.28
2257 2336 2.368548 ACGCCTAGGCATCATGTCATTA 59.631 45.455 32.47 0.00 42.06 1.90
2258 2337 1.141657 ACGCCTAGGCATCATGTCATT 59.858 47.619 32.47 0.00 42.06 2.57
2259 2338 0.761187 ACGCCTAGGCATCATGTCAT 59.239 50.000 32.47 3.82 42.06 3.06
2260 2339 0.541392 AACGCCTAGGCATCATGTCA 59.459 50.000 32.47 0.00 42.06 3.58
2261 2340 0.940126 CAACGCCTAGGCATCATGTC 59.060 55.000 32.47 1.43 42.06 3.06
2262 2341 1.097547 GCAACGCCTAGGCATCATGT 61.098 55.000 32.47 19.03 42.06 3.21
2263 2342 1.650912 GCAACGCCTAGGCATCATG 59.349 57.895 32.47 23.46 42.06 3.07
2264 2343 1.526917 GGCAACGCCTAGGCATCAT 60.527 57.895 32.47 12.53 46.69 2.45
2265 2344 2.124736 GGCAACGCCTAGGCATCA 60.125 61.111 32.47 0.00 46.69 3.07
2291 2370 9.453325 ACCTATTTACACATTTGTTTTAACACG 57.547 29.630 0.00 0.00 38.92 4.49
2304 2386 9.471084 GTTGTTTTTAAGCACCTATTTACACAT 57.529 29.630 0.00 0.00 0.00 3.21
2305 2387 7.921745 GGTTGTTTTTAAGCACCTATTTACACA 59.078 33.333 0.00 0.00 0.00 3.72
2306 2388 7.921745 TGGTTGTTTTTAAGCACCTATTTACAC 59.078 33.333 0.00 0.00 33.55 2.90
2307 2389 8.008513 TGGTTGTTTTTAAGCACCTATTTACA 57.991 30.769 0.00 0.00 33.55 2.41
2308 2390 8.354426 TCTGGTTGTTTTTAAGCACCTATTTAC 58.646 33.333 0.00 0.00 34.66 2.01
2444 2526 1.284715 GTGGCGCCGCTTTAAGTTT 59.715 52.632 32.27 0.00 0.00 2.66
2452 2534 2.281900 TTAAAAGGTGGCGCCGCT 60.282 55.556 36.63 21.25 43.70 5.52
2501 2583 4.579127 GTGTTGGGCACTTGGAGT 57.421 55.556 0.00 0.00 44.41 3.85
2511 2593 6.263842 GGCATGGATGATATATATGTGTTGGG 59.736 42.308 0.00 0.00 0.00 4.12
2563 2646 6.845758 AGTCATGGATGTCAATCACAATTT 57.154 33.333 0.00 0.00 38.97 1.82
2565 2648 5.947566 TCAAGTCATGGATGTCAATCACAAT 59.052 36.000 0.00 0.00 38.97 2.71
2574 2658 5.033589 AGAGGAATCAAGTCATGGATGTC 57.966 43.478 0.00 0.00 0.00 3.06
2579 2663 6.323482 TCTCTTCTAGAGGAATCAAGTCATGG 59.677 42.308 6.00 0.00 42.54 3.66
2597 2681 3.371380 GCCCCATCAAGTCATTCTCTTCT 60.371 47.826 0.00 0.00 0.00 2.85
2664 2764 2.475864 CGGTCAAAATTGTGTGGCATTG 59.524 45.455 0.00 0.00 0.00 2.82
2675 2775 2.413310 ATAGCCGTCCGGTCAAAATT 57.587 45.000 7.66 0.00 37.65 1.82
2683 2783 7.490000 AGATCTAAATAAATATAGCCGTCCGG 58.510 38.462 0.24 0.24 38.57 5.14
2722 2886 9.965824 CACAAACCTCAAATGTTTAACTAATCT 57.034 29.630 0.00 0.00 34.32 2.40
2723 2887 9.959749 TCACAAACCTCAAATGTTTAACTAATC 57.040 29.630 0.00 0.00 34.32 1.75
2724 2888 9.965824 CTCACAAACCTCAAATGTTTAACTAAT 57.034 29.630 0.00 0.00 34.32 1.73
2849 3013 5.106317 GCCTCAAATGAACCACGATTCTTTA 60.106 40.000 0.00 0.00 0.00 1.85
2853 3017 2.159379 GGCCTCAAATGAACCACGATTC 60.159 50.000 0.00 0.00 0.00 2.52
2864 3028 9.770097 ATATATCATCGTATAAGGCCTCAAATG 57.230 33.333 5.23 4.98 0.00 2.32
2905 3071 7.326063 GTGCATTTTATGTGAAACTTCTACCAC 59.674 37.037 0.00 0.00 38.04 4.16
2908 3078 8.970691 ATGTGCATTTTATGTGAAACTTCTAC 57.029 30.769 0.00 0.00 38.04 2.59
2911 3081 9.372541 CAAAATGTGCATTTTATGTGAAACTTC 57.627 29.630 18.75 0.00 46.01 3.01
2922 3092 5.069648 TCCACCTGTCAAAATGTGCATTTTA 59.930 36.000 18.75 6.80 46.01 1.52
3029 3201 4.842531 TCCATGCTCTTTCTTGGACATA 57.157 40.909 0.00 0.00 35.96 2.29
3037 3209 2.290577 GGGTTCAGTCCATGCTCTTTCT 60.291 50.000 0.00 0.00 0.00 2.52
3057 3229 6.127703 ACAGCTTTCTTGAGATGATCAATTGG 60.128 38.462 5.42 0.00 46.71 3.16
3062 3234 6.647229 ACATACAGCTTTCTTGAGATGATCA 58.353 36.000 0.00 0.00 36.58 2.92
3142 3314 7.494625 ACGTAAATACAAATCTATGAGGTGGTG 59.505 37.037 0.00 0.00 0.00 4.17
3143 3315 7.562135 ACGTAAATACAAATCTATGAGGTGGT 58.438 34.615 0.00 0.00 0.00 4.16
3144 3316 8.975439 GTACGTAAATACAAATCTATGAGGTGG 58.025 37.037 0.00 0.00 0.00 4.61
3210 3454 0.889306 AGGGACGCTCTAGTGTTGTC 59.111 55.000 0.00 9.46 39.12 3.18
3212 3456 2.356382 CTCTAGGGACGCTCTAGTGTTG 59.644 54.545 11.79 0.00 39.12 3.33
3224 3468 4.712829 AGAAGGTAAGCTTTCTCTAGGGAC 59.287 45.833 3.20 0.00 36.48 4.46
3228 3472 5.423931 AGGGAAGAAGGTAAGCTTTCTCTAG 59.576 44.000 3.20 0.00 39.68 2.43
3279 3524 3.003394 TGCCTCAATCATGAATCCGTT 57.997 42.857 0.00 0.00 34.49 4.44
3281 3526 4.374843 TTTTGCCTCAATCATGAATCCG 57.625 40.909 0.00 0.00 34.49 4.18
3335 3580 1.504359 TGCCGTTTTTCAGGTAGTCG 58.496 50.000 0.00 0.00 0.00 4.18
3346 3591 2.086869 CTGAGGTGATGATGCCGTTTT 58.913 47.619 0.00 0.00 0.00 2.43
3389 3634 1.487976 TGGCCTAGCATGAAGAGAAGG 59.512 52.381 3.32 0.00 0.00 3.46
3461 3706 2.758979 CCAGAGCCTCATGATTTTTGCT 59.241 45.455 0.00 0.00 0.00 3.91
3586 3840 8.488668 TCACATAAAATTCCTAGTAGTAACCCC 58.511 37.037 0.00 0.00 0.00 4.95
3664 3918 3.575256 TCTTGTGCTTCATCCTGCATTTT 59.425 39.130 0.00 0.00 41.45 1.82
3665 3919 3.159472 TCTTGTGCTTCATCCTGCATTT 58.841 40.909 0.00 0.00 41.45 2.32
3666 3920 2.799017 TCTTGTGCTTCATCCTGCATT 58.201 42.857 0.00 0.00 41.45 3.56
3681 3953 1.139853 GATCCATCGAGCCCTTCTTGT 59.860 52.381 0.00 0.00 0.00 3.16
3759 4031 3.181453 CCCACTCATCTGCAATCATCTCT 60.181 47.826 0.00 0.00 0.00 3.10
3784 4056 1.070758 GAAGCACTCCCTGTTGAGACA 59.929 52.381 0.00 0.00 36.22 3.41
3858 4130 1.375908 GACGCTGACCATCCTTGCA 60.376 57.895 0.00 0.00 0.00 4.08
3939 4214 7.267857 TGTACTGGTCATGTATGATTCAGAAG 58.732 38.462 22.81 9.30 40.29 2.85
3940 4215 7.181569 TGTACTGGTCATGTATGATTCAGAA 57.818 36.000 22.81 12.32 40.29 3.02
3941 4216 6.790232 TGTACTGGTCATGTATGATTCAGA 57.210 37.500 22.81 11.67 40.29 3.27
3969 4244 8.951787 ACACTACATTTACAAGACTTGTACAA 57.048 30.769 24.42 20.33 45.16 2.41
4031 4309 4.043310 CCCATTGATTAGCCTCCCTCATAA 59.957 45.833 0.00 0.00 0.00 1.90
4057 4335 1.202746 GGAAGAGAGCATCCCCATGAC 60.203 57.143 0.00 0.00 33.66 3.06
4088 4366 1.620819 GAGAAGAGCTCCAGAACCACA 59.379 52.381 10.93 0.00 37.69 4.17
4353 4643 8.675705 ATTTTGTTGGGGATTCTTAAAGTTTG 57.324 30.769 0.00 0.00 0.00 2.93
4412 4702 2.373502 GGAAGGACATCAGGGATTAGGG 59.626 54.545 0.00 0.00 0.00 3.53
4470 4760 1.456331 CCATTGCCATGGGGAGGAC 60.456 63.158 15.13 0.00 45.99 3.85
4510 4804 3.936203 GGACGGTGCCTCCACACA 61.936 66.667 0.00 0.00 43.88 3.72
4548 4843 2.652530 GTTAGTCGGTGGTCGCCA 59.347 61.111 1.30 0.00 39.05 5.69
4590 4885 1.257750 TGCGACACTCTGCAGGGTAT 61.258 55.000 21.31 8.62 35.87 2.73
4616 4911 3.777522 GCTGGGCCACCTAGATCTAATAT 59.222 47.826 0.00 0.00 37.76 1.28
4670 4965 2.158667 TCCTTCCCTTTGACTGTTGGTC 60.159 50.000 0.00 0.00 44.70 4.02
4671 4966 1.850345 TCCTTCCCTTTGACTGTTGGT 59.150 47.619 0.00 0.00 0.00 3.67
4673 4968 2.294512 GCTTCCTTCCCTTTGACTGTTG 59.705 50.000 0.00 0.00 0.00 3.33
4674 4969 2.587522 GCTTCCTTCCCTTTGACTGTT 58.412 47.619 0.00 0.00 0.00 3.16
4675 4970 1.202940 GGCTTCCTTCCCTTTGACTGT 60.203 52.381 0.00 0.00 0.00 3.55
4676 4971 1.074566 AGGCTTCCTTCCCTTTGACTG 59.925 52.381 0.00 0.00 0.00 3.51
4677 4972 1.450360 AGGCTTCCTTCCCTTTGACT 58.550 50.000 0.00 0.00 0.00 3.41
4678 4973 3.348119 CTTAGGCTTCCTTCCCTTTGAC 58.652 50.000 0.00 0.00 34.61 3.18
4679 4974 2.308866 CCTTAGGCTTCCTTCCCTTTGA 59.691 50.000 0.00 0.00 34.61 2.69
4680 4975 2.308866 TCCTTAGGCTTCCTTCCCTTTG 59.691 50.000 0.00 0.00 34.61 2.77
4681 4976 2.309162 GTCCTTAGGCTTCCTTCCCTTT 59.691 50.000 0.00 0.00 34.61 3.11
4709 5049 1.402984 CCCTACACACGAGCTGAGTTC 60.403 57.143 0.00 0.00 0.00 3.01
4730 5070 1.915983 GGACAACCTCATCCCTCCC 59.084 63.158 0.00 0.00 0.00 4.30
4733 5073 0.326618 ATCCGGACAACCTCATCCCT 60.327 55.000 6.12 0.00 0.00 4.20
4734 5074 1.420430 TATCCGGACAACCTCATCCC 58.580 55.000 6.12 0.00 0.00 3.85
4735 5075 2.368875 ACATATCCGGACAACCTCATCC 59.631 50.000 6.12 0.00 0.00 3.51
4736 5076 3.322254 AGACATATCCGGACAACCTCATC 59.678 47.826 6.12 0.00 0.00 2.92
4737 5077 3.309296 AGACATATCCGGACAACCTCAT 58.691 45.455 6.12 0.00 0.00 2.90
4738 5078 2.747177 AGACATATCCGGACAACCTCA 58.253 47.619 6.12 0.00 0.00 3.86
4739 5079 4.023021 GTCTAGACATATCCGGACAACCTC 60.023 50.000 18.20 0.00 31.20 3.85
4740 5080 3.890147 GTCTAGACATATCCGGACAACCT 59.110 47.826 18.20 3.19 31.20 3.50
4741 5081 3.005578 GGTCTAGACATATCCGGACAACC 59.994 52.174 23.91 0.00 31.96 3.77
4742 5082 3.635373 TGGTCTAGACATATCCGGACAAC 59.365 47.826 23.91 2.90 31.96 3.32
4743 5083 3.635373 GTGGTCTAGACATATCCGGACAA 59.365 47.826 23.91 0.00 31.96 3.18
4744 5084 3.220110 GTGGTCTAGACATATCCGGACA 58.780 50.000 23.91 0.00 31.96 4.02
4806 5146 5.283763 TGGGCATGGCTAGAATAGATAGAT 58.716 41.667 19.78 0.00 42.77 1.98
4814 5154 1.005805 TGTGTTGGGCATGGCTAGAAT 59.994 47.619 19.78 0.00 0.00 2.40
4824 5164 1.039068 CAATGAGGTTGTGTTGGGCA 58.961 50.000 0.00 0.00 33.01 5.36
4825 5165 3.892200 CAATGAGGTTGTGTTGGGC 57.108 52.632 0.00 0.00 33.01 5.36
4837 5177 2.433970 GAGAGAGAGGGGGAACAATGAG 59.566 54.545 0.00 0.00 0.00 2.90
4857 5197 3.894427 GCATGTCTGGAAGAGATAGAGGA 59.106 47.826 0.00 0.00 46.40 3.71
4859 5199 4.933505 TGCATGTCTGGAAGAGATAGAG 57.066 45.455 0.00 0.00 46.40 2.43
4900 5240 2.592623 TACTCATCACACCGCTCGCG 62.593 60.000 0.00 0.00 39.44 5.87
4918 5258 3.000041 GTGCGATTTGTGTGTCATCCTA 59.000 45.455 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.