Multiple sequence alignment - TraesCS6A01G067200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G067200 chr6A 100.000 3875 0 0 1 3875 35650085 35646211 0.000000e+00 7156.0
1 TraesCS6A01G067200 chrUn 94.316 2463 135 3 954 3411 100777199 100779661 0.000000e+00 3768.0
2 TraesCS6A01G067200 chr6B 94.470 2152 108 8 924 3071 66459712 66457568 0.000000e+00 3304.0
3 TraesCS6A01G067200 chr6B 78.277 824 143 27 80 873 701507650 701506833 7.480000e-137 497.0
4 TraesCS6A01G067200 chr6B 81.308 428 55 22 3183 3589 66457548 66457125 1.340000e-84 324.0
5 TraesCS6A01G067200 chr6B 95.122 41 2 0 3621 3661 679635670 679635630 8.990000e-07 65.8
6 TraesCS6A01G067200 chr4D 83.237 865 117 13 14 854 502028130 502028990 0.000000e+00 769.0
7 TraesCS6A01G067200 chr4D 80.316 823 131 18 75 873 138762978 138762163 9.270000e-166 593.0
8 TraesCS6A01G067200 chr2D 82.578 861 114 20 6 842 480165974 480166822 0.000000e+00 726.0
9 TraesCS6A01G067200 chr4A 80.268 897 137 26 3 873 246716212 246717094 1.170000e-179 640.0
10 TraesCS6A01G067200 chr3A 79.978 899 130 28 15 873 727311956 727312844 5.500000e-173 617.0
11 TraesCS6A01G067200 chr6D 79.103 847 141 22 54 872 89358920 89358082 5.660000e-153 551.0
12 TraesCS6A01G067200 chr6D 78.375 800 139 21 54 824 153814664 153813870 4.500000e-134 488.0
13 TraesCS6A01G067200 chr5A 80.132 755 129 15 11 747 550251435 550252186 9.470000e-151 544.0
14 TraesCS6A01G067200 chr3D 78.989 752 134 18 76 806 404545169 404544421 3.480000e-135 492.0
15 TraesCS6A01G067200 chr3D 78.947 285 37 13 15 277 597226182 597226465 5.150000e-39 172.0
16 TraesCS6A01G067200 chr1D 74.548 664 139 18 76 713 79093945 79093286 2.970000e-66 263.0
17 TraesCS6A01G067200 chr3B 91.549 71 6 0 3617 3687 32899600 32899530 8.860000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G067200 chr6A 35646211 35650085 3874 True 7156 7156 100.000 1 3875 1 chr6A.!!$R1 3874
1 TraesCS6A01G067200 chrUn 100777199 100779661 2462 False 3768 3768 94.316 954 3411 1 chrUn.!!$F1 2457
2 TraesCS6A01G067200 chr6B 66457125 66459712 2587 True 1814 3304 87.889 924 3589 2 chr6B.!!$R3 2665
3 TraesCS6A01G067200 chr6B 701506833 701507650 817 True 497 497 78.277 80 873 1 chr6B.!!$R2 793
4 TraesCS6A01G067200 chr4D 502028130 502028990 860 False 769 769 83.237 14 854 1 chr4D.!!$F1 840
5 TraesCS6A01G067200 chr4D 138762163 138762978 815 True 593 593 80.316 75 873 1 chr4D.!!$R1 798
6 TraesCS6A01G067200 chr2D 480165974 480166822 848 False 726 726 82.578 6 842 1 chr2D.!!$F1 836
7 TraesCS6A01G067200 chr4A 246716212 246717094 882 False 640 640 80.268 3 873 1 chr4A.!!$F1 870
8 TraesCS6A01G067200 chr3A 727311956 727312844 888 False 617 617 79.978 15 873 1 chr3A.!!$F1 858
9 TraesCS6A01G067200 chr6D 89358082 89358920 838 True 551 551 79.103 54 872 1 chr6D.!!$R1 818
10 TraesCS6A01G067200 chr6D 153813870 153814664 794 True 488 488 78.375 54 824 1 chr6D.!!$R2 770
11 TraesCS6A01G067200 chr5A 550251435 550252186 751 False 544 544 80.132 11 747 1 chr5A.!!$F1 736
12 TraesCS6A01G067200 chr3D 404544421 404545169 748 True 492 492 78.989 76 806 1 chr3D.!!$R1 730
13 TraesCS6A01G067200 chr1D 79093286 79093945 659 True 263 263 74.548 76 713 1 chr1D.!!$R1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 245 0.248498 TGATAAGTTCTCCGCGCTCG 60.248 55.0 5.56 0.00 0.0 5.03 F
1680 1732 0.467474 ACATGATGGCTGCAGATGGG 60.467 55.0 20.43 1.67 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1937 1989 0.605589 CTCAGCCTTCACGAACTCCT 59.394 55.0 0.0 0.0 0.0 3.69 R
2911 2965 0.108662 CGAGTGTGTATGGAGCAGCA 60.109 55.0 0.0 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.687757 TAGCCAGGCGATCTCAAGGT 60.688 55.000 5.55 0.00 0.00 3.50
67 74 2.361104 GGATCCCTTTGTGCGCCA 60.361 61.111 4.18 0.00 0.00 5.69
157 166 5.363580 TCAGATCTATGCATCTGGTGTGTTA 59.636 40.000 13.65 0.00 46.88 2.41
204 228 4.865761 GCGGTGGCGCGTCTGATA 62.866 66.667 13.81 0.00 0.00 2.15
206 230 2.230940 CGGTGGCGCGTCTGATAAG 61.231 63.158 13.81 0.00 0.00 1.73
207 231 1.153628 GGTGGCGCGTCTGATAAGT 60.154 57.895 13.81 0.00 0.00 2.24
213 237 1.467875 CGCGTCTGATAAGTTCTCCG 58.532 55.000 0.00 0.00 0.00 4.63
219 245 0.248498 TGATAAGTTCTCCGCGCTCG 60.248 55.000 5.56 0.00 0.00 5.03
238 264 2.203523 TTCACGGTCAGACGGGGA 60.204 61.111 8.96 8.96 37.96 4.81
261 287 0.902984 TGCCTTCGTCTAGGAGCCAA 60.903 55.000 5.39 0.00 37.50 4.52
321 348 0.692756 TGGTGTCTGGAGGTTGACCA 60.693 55.000 2.56 0.00 38.89 4.02
351 379 0.906775 GTTTGGTCCTCGGATGGGTA 59.093 55.000 0.00 0.00 0.00 3.69
385 421 4.697828 GGAGACAAACATTCTTCTTCCTCC 59.302 45.833 0.00 0.00 0.00 4.30
395 431 7.569240 ACATTCTTCTTCCTCCTTGGTATAAG 58.431 38.462 0.00 0.00 37.07 1.73
445 481 4.379243 CGCTGCTGGAGGGACGTT 62.379 66.667 7.47 0.00 36.74 3.99
447 483 2.266055 CTGCTGGAGGGACGTTCC 59.734 66.667 4.03 4.03 35.23 3.62
472 508 3.322466 CTGGGCAGTTCTCCCGGT 61.322 66.667 0.00 0.00 46.92 5.28
545 585 3.678056 AGCGGTACTCAAAGTTGATGA 57.322 42.857 0.00 0.00 36.46 2.92
602 642 0.539986 TCCTTATCTTTTCGGCGCCT 59.460 50.000 26.68 6.03 0.00 5.52
604 644 0.657840 CTTATCTTTTCGGCGCCTGG 59.342 55.000 26.68 10.37 0.00 4.45
654 695 4.092968 GGTGATTATGTCGTGGTTGAAGAC 59.907 45.833 0.00 0.00 33.95 3.01
687 728 8.582657 TGCTAGGGTCTAGATACAGATTATTC 57.417 38.462 0.00 0.00 0.00 1.75
776 825 1.771854 TGGTTGTTTGAGGGTGCTCTA 59.228 47.619 0.00 0.00 0.00 2.43
781 830 3.411446 TGTTTGAGGGTGCTCTATGTTG 58.589 45.455 0.00 0.00 0.00 3.33
813 865 2.821546 TGCGTGTGTTAGGATATGCTC 58.178 47.619 0.00 0.00 0.00 4.26
827 879 4.025145 GGATATGCTCGTTCGGGTTTAAAG 60.025 45.833 0.00 0.00 0.00 1.85
866 918 8.511321 TCGTGATTTGAATACAAGCATACTTTT 58.489 29.630 0.00 0.00 37.32 2.27
919 971 9.756571 AAGTATAGTACTCTTCCTTCTCAAAGA 57.243 33.333 0.00 0.00 38.26 2.52
933 985 9.167311 TCCTTCTCAAAGAGAAATTTGTATAGC 57.833 33.333 10.33 0.00 46.18 2.97
951 1003 7.310664 TGTATAGCAATATAGTACTTCGGTGC 58.689 38.462 0.00 6.93 0.00 5.01
952 1004 4.939052 AGCAATATAGTACTTCGGTGCT 57.061 40.909 14.54 14.54 43.12 4.40
965 1017 3.414700 GTGCTGTGGGAAGTCGCG 61.415 66.667 0.00 0.00 0.00 5.87
1557 1609 1.059369 CAAAATGCGCGTCGGAGAG 59.941 57.895 8.43 0.00 36.95 3.20
1680 1732 0.467474 ACATGATGGCTGCAGATGGG 60.467 55.000 20.43 1.67 0.00 4.00
1770 1822 1.059584 TGAAGGGGTTGCTGGAGACA 61.060 55.000 0.00 0.00 39.59 3.41
1810 1862 1.597690 CGTGCACATTCAACACACTGG 60.598 52.381 18.64 0.00 33.89 4.00
2101 2153 0.313987 GGTGCTGTTTGGGCAACTAC 59.686 55.000 0.00 0.00 43.29 2.73
2166 2218 2.425143 TTCTAGGGCATTGCAAGGAG 57.575 50.000 16.56 3.06 0.00 3.69
2358 2410 0.878961 GCACGTTCCACTCGGTTCTT 60.879 55.000 0.00 0.00 0.00 2.52
2361 2413 3.125316 CACGTTCCACTCGGTTCTTTTA 58.875 45.455 0.00 0.00 0.00 1.52
2466 2518 4.617959 TGGATCTTTCGACCAATACGATC 58.382 43.478 0.00 0.00 39.45 3.69
2470 2522 3.127376 TCTTTCGACCAATACGATCGACA 59.873 43.478 24.34 9.49 44.05 4.35
2643 2695 1.098050 AGAAGCGTCATGATTTGGGC 58.902 50.000 0.00 0.00 0.00 5.36
2650 2702 0.036858 TCATGATTTGGGCGTGTCGA 60.037 50.000 0.00 0.00 0.00 4.20
2719 2771 0.249953 TGCGTTCCGGCTTTTCTACA 60.250 50.000 0.00 0.00 0.00 2.74
2775 2827 1.034838 AACCTCGCAGTTTGGTTGCA 61.035 50.000 0.00 0.00 41.87 4.08
2806 2858 3.174375 GCGCTTGATGAAGATGGAAAAC 58.826 45.455 0.00 0.00 0.00 2.43
2828 2880 5.594926 ACAGAAAGAAGCTGATTTTGTTGG 58.405 37.500 0.00 0.00 36.86 3.77
2887 2941 9.803315 GGGAAATGGTCTAAGAATTAACATTTC 57.197 33.333 15.69 15.69 44.56 2.17
2899 2953 2.009681 AACATTTCCCCAGGAACCAC 57.990 50.000 0.00 0.00 41.87 4.16
2911 2965 4.263506 CCCAGGAACCACTTCAAACTCTAT 60.264 45.833 0.00 0.00 0.00 1.98
2913 2967 4.154918 CAGGAACCACTTCAAACTCTATGC 59.845 45.833 0.00 0.00 0.00 3.14
2916 2970 3.077359 ACCACTTCAAACTCTATGCTGC 58.923 45.455 0.00 0.00 0.00 5.25
2920 2974 3.008375 ACTTCAAACTCTATGCTGCTCCA 59.992 43.478 0.00 0.00 0.00 3.86
2973 3029 4.386413 AAGCTGGACTTCCAAGCG 57.614 55.556 0.00 0.00 46.97 4.68
2989 3045 3.423154 CGCTCGGCTTGACCAACC 61.423 66.667 0.00 0.00 39.03 3.77
2992 3048 4.243008 TCGGCTTGACCAACCGCA 62.243 61.111 14.45 5.84 46.49 5.69
3005 3061 1.987770 CAACCGCATGACAAGAAATGC 59.012 47.619 0.00 0.00 44.61 3.56
3037 3093 7.330946 CGAGGAATGTTAGATGTTGTAAGAACA 59.669 37.037 0.00 0.00 34.31 3.18
3040 3096 8.730680 GGAATGTTAGATGTTGTAAGAACACAT 58.269 33.333 0.00 0.00 34.61 3.21
3043 3099 8.234887 TGTTAGATGTTGTAAGAACACATACG 57.765 34.615 0.00 0.00 34.61 3.06
3044 3100 8.083462 TGTTAGATGTTGTAAGAACACATACGA 58.917 33.333 0.00 0.00 34.61 3.43
3096 3152 2.714250 TCCTTAGAAGGGTTTGCTTGGA 59.286 45.455 8.46 0.00 46.47 3.53
3103 3159 1.047801 GGGTTTGCTTGGACCATTGT 58.952 50.000 0.00 0.00 37.68 2.71
3105 3161 2.029380 GGGTTTGCTTGGACCATTGTAC 60.029 50.000 0.00 0.00 37.68 2.90
3108 3164 0.398696 TGCTTGGACCATTGTACGGT 59.601 50.000 0.00 0.00 40.30 4.83
3132 3188 3.637229 AGACTTCGAGACAGAAAGAACCA 59.363 43.478 0.00 0.00 0.00 3.67
3136 3192 5.477291 ACTTCGAGACAGAAAGAACCATCTA 59.523 40.000 0.00 0.00 33.77 1.98
3139 3195 4.379603 CGAGACAGAAAGAACCATCTACGT 60.380 45.833 0.00 0.00 33.77 3.57
3148 3204 1.103803 ACCATCTACGTCTGCGACAT 58.896 50.000 0.00 0.00 42.00 3.06
3167 3223 2.877097 TCATAAGCTTGTCAAGGCCA 57.123 45.000 14.40 0.00 0.00 5.36
3170 3226 2.128771 TAAGCTTGTCAAGGCCATCC 57.871 50.000 14.40 0.00 0.00 3.51
3181 3237 1.006102 GGCCATCCGATCTGGTACG 60.006 63.158 0.00 0.00 39.52 3.67
3182 3238 1.740285 GCCATCCGATCTGGTACGT 59.260 57.895 0.00 0.00 39.52 3.57
3197 3253 2.549349 GGTACGTTTCTTCTCAAGGGCA 60.549 50.000 0.00 0.00 0.00 5.36
3275 3334 3.495100 GGAGACTTTGAAGAGCAGGTTCA 60.495 47.826 0.00 0.00 31.98 3.18
3290 3349 3.318839 CAGGTTCACTGGAAATCAAAGCA 59.681 43.478 0.00 0.00 43.70 3.91
3294 3353 2.892215 TCACTGGAAATCAAAGCATGCA 59.108 40.909 21.98 0.00 0.00 3.96
3304 3365 2.091720 TCAAAGCATGCATCCACCCTAT 60.092 45.455 21.98 0.00 0.00 2.57
3309 3370 3.590630 AGCATGCATCCACCCTATAATCT 59.409 43.478 21.98 0.00 0.00 2.40
3310 3371 4.043812 AGCATGCATCCACCCTATAATCTT 59.956 41.667 21.98 0.00 0.00 2.40
3344 3407 2.885266 TCCATATGAGCTACGGTGACTC 59.115 50.000 3.65 5.56 0.00 3.36
3346 3409 2.034104 TATGAGCTACGGTGACTCGT 57.966 50.000 10.53 10.53 45.88 4.18
3353 3416 2.582687 CTACGGTGACTCGTTGAGTTC 58.417 52.381 4.59 0.00 43.53 3.01
3360 3423 3.729716 GTGACTCGTTGAGTTCACAGTAC 59.270 47.826 17.07 0.00 43.53 2.73
3380 3443 0.953727 TGGCTGTCAGACACATTTGC 59.046 50.000 3.55 0.85 33.23 3.68
3418 3481 5.894807 GCATTGCCAGAAATAATGTACAGT 58.105 37.500 0.33 0.07 0.00 3.55
3511 3606 5.814481 TGGATGTGTGGAAGTGATTTCATA 58.186 37.500 0.00 0.00 37.54 2.15
3516 3611 8.585471 ATGTGTGGAAGTGATTTCATAATCTT 57.415 30.769 0.00 0.00 40.68 2.40
3517 3612 8.044060 TGTGTGGAAGTGATTTCATAATCTTC 57.956 34.615 0.00 0.00 40.68 2.87
3518 3613 7.665145 TGTGTGGAAGTGATTTCATAATCTTCA 59.335 33.333 9.50 0.00 40.68 3.02
3533 3628 8.535335 TCATAATCTTCAAAGTACTCTTGCTCT 58.465 33.333 0.00 0.00 33.79 4.09
3536 3631 6.161855 TCTTCAAAGTACTCTTGCTCTGAA 57.838 37.500 0.00 0.00 33.79 3.02
3543 3638 2.175202 ACTCTTGCTCTGAAGATCCGT 58.825 47.619 0.00 0.00 31.51 4.69
3544 3639 2.564947 ACTCTTGCTCTGAAGATCCGTT 59.435 45.455 0.00 0.00 31.51 4.44
3545 3640 2.928757 CTCTTGCTCTGAAGATCCGTTG 59.071 50.000 0.00 0.00 31.51 4.10
3546 3641 2.300152 TCTTGCTCTGAAGATCCGTTGT 59.700 45.455 0.00 0.00 0.00 3.32
3547 3642 2.084610 TGCTCTGAAGATCCGTTGTG 57.915 50.000 0.00 0.00 0.00 3.33
3567 3663 2.119495 GGAAGATAGGCTGAAGACCCA 58.881 52.381 0.00 0.00 0.00 4.51
3578 3674 0.955919 GAAGACCCAGCCTTGTTCGG 60.956 60.000 0.00 0.00 0.00 4.30
3581 3677 0.672711 GACCCAGCCTTGTTCGGTAC 60.673 60.000 0.00 0.00 0.00 3.34
3597 3693 2.833794 GGTACGCCATCATTAGCAAGA 58.166 47.619 0.00 0.00 34.09 3.02
3598 3694 3.202906 GGTACGCCATCATTAGCAAGAA 58.797 45.455 0.00 0.00 34.09 2.52
3599 3695 3.815401 GGTACGCCATCATTAGCAAGAAT 59.185 43.478 0.00 0.00 34.09 2.40
3600 3696 3.976793 ACGCCATCATTAGCAAGAATG 57.023 42.857 0.00 0.00 38.03 2.67
3601 3697 7.761368 GGTACGCCATCATTAGCAAGAATGC 62.761 48.000 0.00 0.00 43.14 3.56
3613 3709 3.582714 CAAGAATGCCTGGGAACTTTC 57.417 47.619 7.91 1.02 0.00 2.62
3614 3710 3.160269 CAAGAATGCCTGGGAACTTTCT 58.840 45.455 7.91 3.14 33.21 2.52
3615 3711 2.800250 AGAATGCCTGGGAACTTTCTG 58.200 47.619 2.24 0.00 31.33 3.02
3616 3712 2.108952 AGAATGCCTGGGAACTTTCTGT 59.891 45.455 2.24 0.00 31.33 3.41
3617 3713 2.683211 ATGCCTGGGAACTTTCTGTT 57.317 45.000 0.00 0.00 42.38 3.16
3618 3714 2.452600 TGCCTGGGAACTTTCTGTTT 57.547 45.000 0.00 0.00 39.30 2.83
3619 3715 2.745968 TGCCTGGGAACTTTCTGTTTT 58.254 42.857 0.00 0.00 39.30 2.43
3620 3716 2.430332 TGCCTGGGAACTTTCTGTTTTG 59.570 45.455 0.00 0.00 39.30 2.44
3621 3717 2.693074 GCCTGGGAACTTTCTGTTTTGA 59.307 45.455 0.00 0.00 39.30 2.69
3622 3718 3.490933 GCCTGGGAACTTTCTGTTTTGAC 60.491 47.826 0.00 0.00 39.30 3.18
3623 3719 3.699038 CCTGGGAACTTTCTGTTTTGACA 59.301 43.478 0.00 0.00 39.30 3.58
3624 3720 4.440112 CCTGGGAACTTTCTGTTTTGACAC 60.440 45.833 0.00 0.00 39.30 3.67
3625 3721 4.340617 TGGGAACTTTCTGTTTTGACACT 58.659 39.130 0.00 0.00 39.30 3.55
3626 3722 4.770010 TGGGAACTTTCTGTTTTGACACTT 59.230 37.500 0.00 0.00 39.30 3.16
3627 3723 5.105917 TGGGAACTTTCTGTTTTGACACTTC 60.106 40.000 0.00 0.00 39.30 3.01
3628 3724 5.105917 GGGAACTTTCTGTTTTGACACTTCA 60.106 40.000 0.00 0.00 39.30 3.02
3629 3725 6.386654 GGAACTTTCTGTTTTGACACTTCAA 58.613 36.000 0.00 0.00 40.14 2.69
3641 3737 7.654022 TTTGACACTTCAAACCTCCTTTATT 57.346 32.000 0.00 0.00 45.08 1.40
3642 3738 6.877611 TGACACTTCAAACCTCCTTTATTC 57.122 37.500 0.00 0.00 0.00 1.75
3643 3739 6.361433 TGACACTTCAAACCTCCTTTATTCA 58.639 36.000 0.00 0.00 0.00 2.57
3644 3740 7.004086 TGACACTTCAAACCTCCTTTATTCAT 58.996 34.615 0.00 0.00 0.00 2.57
3645 3741 7.505585 TGACACTTCAAACCTCCTTTATTCATT 59.494 33.333 0.00 0.00 0.00 2.57
3646 3742 8.250143 ACACTTCAAACCTCCTTTATTCATTT 57.750 30.769 0.00 0.00 0.00 2.32
3647 3743 9.362151 ACACTTCAAACCTCCTTTATTCATTTA 57.638 29.630 0.00 0.00 0.00 1.40
3648 3744 9.626045 CACTTCAAACCTCCTTTATTCATTTAC 57.374 33.333 0.00 0.00 0.00 2.01
3649 3745 8.803235 ACTTCAAACCTCCTTTATTCATTTACC 58.197 33.333 0.00 0.00 0.00 2.85
3650 3746 8.713708 TTCAAACCTCCTTTATTCATTTACCA 57.286 30.769 0.00 0.00 0.00 3.25
3651 3747 8.348285 TCAAACCTCCTTTATTCATTTACCAG 57.652 34.615 0.00 0.00 0.00 4.00
3652 3748 8.167392 TCAAACCTCCTTTATTCATTTACCAGA 58.833 33.333 0.00 0.00 0.00 3.86
3653 3749 8.802267 CAAACCTCCTTTATTCATTTACCAGAA 58.198 33.333 0.00 0.00 0.00 3.02
3654 3750 9.547279 AAACCTCCTTTATTCATTTACCAGAAT 57.453 29.630 0.00 0.00 38.05 2.40
3655 3751 8.525290 ACCTCCTTTATTCATTTACCAGAATG 57.475 34.615 0.00 0.00 38.16 2.67
3672 3768 6.456447 CAGAATGGTTGCATTGTTTACAAG 57.544 37.500 1.50 0.00 39.47 3.16
3673 3769 4.990426 AGAATGGTTGCATTGTTTACAAGC 59.010 37.500 1.50 5.95 39.47 4.01
3674 3770 3.808466 TGGTTGCATTGTTTACAAGCA 57.192 38.095 12.49 12.49 46.20 3.91
3675 3771 4.333913 TGGTTGCATTGTTTACAAGCAT 57.666 36.364 15.38 0.00 44.27 3.79
3676 3772 5.459536 TGGTTGCATTGTTTACAAGCATA 57.540 34.783 15.38 8.12 44.27 3.14
3677 3773 5.468592 TGGTTGCATTGTTTACAAGCATAG 58.531 37.500 15.38 1.36 44.27 2.23
3678 3774 5.242615 TGGTTGCATTGTTTACAAGCATAGA 59.757 36.000 15.38 4.41 44.27 1.98
3679 3775 6.155827 GGTTGCATTGTTTACAAGCATAGAA 58.844 36.000 15.38 4.16 40.55 2.10
3680 3776 6.644592 GGTTGCATTGTTTACAAGCATAGAAA 59.355 34.615 15.38 3.91 40.55 2.52
3681 3777 7.331687 GGTTGCATTGTTTACAAGCATAGAAAT 59.668 33.333 15.38 0.00 40.55 2.17
3682 3778 8.711457 GTTGCATTGTTTACAAGCATAGAAATT 58.289 29.630 15.38 0.00 38.63 1.82
3683 3779 9.920133 TTGCATTGTTTACAAGCATAGAAATTA 57.080 25.926 15.38 2.46 38.63 1.40
3684 3780 9.352784 TGCATTGTTTACAAGCATAGAAATTAC 57.647 29.630 12.49 0.00 39.47 1.89
3685 3781 9.352784 GCATTGTTTACAAGCATAGAAATTACA 57.647 29.630 1.50 0.00 39.47 2.41
3687 3783 8.964420 TTGTTTACAAGCATAGAAATTACAGC 57.036 30.769 0.00 0.00 0.00 4.40
3688 3784 7.535139 TGTTTACAAGCATAGAAATTACAGCC 58.465 34.615 0.00 0.00 0.00 4.85
3689 3785 7.393234 TGTTTACAAGCATAGAAATTACAGCCT 59.607 33.333 0.00 0.00 0.00 4.58
3690 3786 8.889717 GTTTACAAGCATAGAAATTACAGCCTA 58.110 33.333 0.00 0.00 0.00 3.93
3691 3787 9.456147 TTTACAAGCATAGAAATTACAGCCTAA 57.544 29.630 0.00 0.00 0.00 2.69
3692 3788 7.559590 ACAAGCATAGAAATTACAGCCTAAG 57.440 36.000 0.00 0.00 0.00 2.18
3693 3789 7.112779 ACAAGCATAGAAATTACAGCCTAAGT 58.887 34.615 0.00 0.00 0.00 2.24
3694 3790 8.265055 ACAAGCATAGAAATTACAGCCTAAGTA 58.735 33.333 0.00 0.00 0.00 2.24
3695 3791 8.768955 CAAGCATAGAAATTACAGCCTAAGTAG 58.231 37.037 0.00 0.00 0.00 2.57
3696 3792 8.251383 AGCATAGAAATTACAGCCTAAGTAGA 57.749 34.615 0.00 0.00 0.00 2.59
3697 3793 8.875168 AGCATAGAAATTACAGCCTAAGTAGAT 58.125 33.333 0.00 0.00 0.00 1.98
3698 3794 8.930760 GCATAGAAATTACAGCCTAAGTAGATG 58.069 37.037 0.00 0.00 0.00 2.90
3699 3795 9.429359 CATAGAAATTACAGCCTAAGTAGATGG 57.571 37.037 0.00 0.00 0.00 3.51
3700 3796 6.292150 AGAAATTACAGCCTAAGTAGATGGC 58.708 40.000 0.00 0.00 46.42 4.40
3709 3805 6.693315 GCCTAAGTAGATGGCAAACAATAA 57.307 37.500 0.00 0.00 45.46 1.40
3710 3806 7.095695 GCCTAAGTAGATGGCAAACAATAAA 57.904 36.000 0.00 0.00 45.46 1.40
3711 3807 7.196331 GCCTAAGTAGATGGCAAACAATAAAG 58.804 38.462 0.00 0.00 45.46 1.85
3712 3808 7.196331 CCTAAGTAGATGGCAAACAATAAAGC 58.804 38.462 0.00 0.00 0.00 3.51
3717 3813 2.385013 GGCAAACAATAAAGCCTGGG 57.615 50.000 0.00 0.00 43.70 4.45
3718 3814 1.899142 GGCAAACAATAAAGCCTGGGA 59.101 47.619 0.00 0.00 43.70 4.37
3719 3815 2.301583 GGCAAACAATAAAGCCTGGGAA 59.698 45.455 0.00 0.00 43.70 3.97
3720 3816 3.325870 GCAAACAATAAAGCCTGGGAAC 58.674 45.455 0.00 0.00 0.00 3.62
3721 3817 3.006859 GCAAACAATAAAGCCTGGGAACT 59.993 43.478 0.00 0.00 0.00 3.01
3722 3818 4.503123 GCAAACAATAAAGCCTGGGAACTT 60.503 41.667 0.00 0.00 0.00 2.66
3723 3819 5.230182 CAAACAATAAAGCCTGGGAACTTC 58.770 41.667 0.00 0.00 0.00 3.01
3724 3820 3.431415 ACAATAAAGCCTGGGAACTTCC 58.569 45.455 0.00 0.00 35.23 3.46
3725 3821 3.076032 ACAATAAAGCCTGGGAACTTCCT 59.924 43.478 7.77 0.00 36.57 3.36
3726 3822 4.089361 CAATAAAGCCTGGGAACTTCCTT 58.911 43.478 7.77 0.00 36.57 3.36
3727 3823 2.775490 AAAGCCTGGGAACTTCCTTT 57.225 45.000 7.77 0.00 36.57 3.11
3728 3824 2.294449 AAGCCTGGGAACTTCCTTTC 57.706 50.000 7.77 0.00 36.57 2.62
3729 3825 1.149101 AGCCTGGGAACTTCCTTTCA 58.851 50.000 7.77 0.00 36.57 2.69
3730 3826 1.074566 AGCCTGGGAACTTCCTTTCAG 59.925 52.381 7.77 6.67 36.57 3.02
3731 3827 1.202940 GCCTGGGAACTTCCTTTCAGT 60.203 52.381 7.77 0.00 36.57 3.41
3732 3828 2.508526 CCTGGGAACTTCCTTTCAGTG 58.491 52.381 7.77 0.00 36.57 3.66
3733 3829 1.882623 CTGGGAACTTCCTTTCAGTGC 59.117 52.381 7.77 0.00 36.57 4.40
3734 3830 1.248486 GGGAACTTCCTTTCAGTGCC 58.752 55.000 7.77 0.00 39.14 5.01
3735 3831 1.478654 GGGAACTTCCTTTCAGTGCCA 60.479 52.381 7.77 0.00 41.50 4.92
3736 3832 2.306847 GGAACTTCCTTTCAGTGCCAA 58.693 47.619 0.00 0.00 39.62 4.52
3737 3833 2.294512 GGAACTTCCTTTCAGTGCCAAG 59.705 50.000 0.00 0.00 39.62 3.61
3738 3834 3.214328 GAACTTCCTTTCAGTGCCAAGA 58.786 45.455 3.99 0.00 0.00 3.02
3739 3835 3.515602 ACTTCCTTTCAGTGCCAAGAT 57.484 42.857 3.99 0.00 0.00 2.40
3740 3836 4.640771 ACTTCCTTTCAGTGCCAAGATA 57.359 40.909 3.99 0.00 0.00 1.98
3741 3837 4.327680 ACTTCCTTTCAGTGCCAAGATAC 58.672 43.478 3.99 0.00 0.00 2.24
3742 3838 4.202461 ACTTCCTTTCAGTGCCAAGATACA 60.202 41.667 3.99 0.00 0.00 2.29
3743 3839 4.365514 TCCTTTCAGTGCCAAGATACAA 57.634 40.909 3.99 0.00 0.00 2.41
3744 3840 4.326826 TCCTTTCAGTGCCAAGATACAAG 58.673 43.478 3.99 0.00 0.00 3.16
3745 3841 4.074970 CCTTTCAGTGCCAAGATACAAGT 58.925 43.478 3.99 0.00 0.00 3.16
3746 3842 4.520492 CCTTTCAGTGCCAAGATACAAGTT 59.480 41.667 3.99 0.00 0.00 2.66
3747 3843 5.335191 CCTTTCAGTGCCAAGATACAAGTTC 60.335 44.000 3.99 0.00 0.00 3.01
3748 3844 4.623932 TCAGTGCCAAGATACAAGTTCT 57.376 40.909 0.00 0.00 0.00 3.01
3749 3845 4.973168 TCAGTGCCAAGATACAAGTTCTT 58.027 39.130 0.00 0.00 33.75 2.52
3750 3846 5.376625 TCAGTGCCAAGATACAAGTTCTTT 58.623 37.500 0.00 0.00 31.11 2.52
3751 3847 5.827797 TCAGTGCCAAGATACAAGTTCTTTT 59.172 36.000 0.00 0.00 31.11 2.27
3752 3848 6.321181 TCAGTGCCAAGATACAAGTTCTTTTT 59.679 34.615 0.00 0.00 31.11 1.94
3772 3868 4.657814 TTTCTAGGCAGAAATGGGAGTT 57.342 40.909 7.67 0.00 44.13 3.01
3773 3869 5.772393 TTTCTAGGCAGAAATGGGAGTTA 57.228 39.130 7.67 0.00 44.13 2.24
3774 3870 5.772393 TTCTAGGCAGAAATGGGAGTTAA 57.228 39.130 0.00 0.00 37.85 2.01
3775 3871 5.772393 TCTAGGCAGAAATGGGAGTTAAA 57.228 39.130 0.00 0.00 0.00 1.52
3776 3872 6.134535 TCTAGGCAGAAATGGGAGTTAAAA 57.865 37.500 0.00 0.00 0.00 1.52
3777 3873 6.180472 TCTAGGCAGAAATGGGAGTTAAAAG 58.820 40.000 0.00 0.00 0.00 2.27
3778 3874 4.998051 AGGCAGAAATGGGAGTTAAAAGA 58.002 39.130 0.00 0.00 0.00 2.52
3779 3875 5.393866 AGGCAGAAATGGGAGTTAAAAGAA 58.606 37.500 0.00 0.00 0.00 2.52
3780 3876 6.019108 AGGCAGAAATGGGAGTTAAAAGAAT 58.981 36.000 0.00 0.00 0.00 2.40
3781 3877 6.153510 AGGCAGAAATGGGAGTTAAAAGAATC 59.846 38.462 0.00 0.00 0.00 2.52
3782 3878 6.333416 GCAGAAATGGGAGTTAAAAGAATCC 58.667 40.000 0.00 0.00 0.00 3.01
3783 3879 6.153510 GCAGAAATGGGAGTTAAAAGAATCCT 59.846 38.462 0.00 0.00 32.18 3.24
3784 3880 7.339466 GCAGAAATGGGAGTTAAAAGAATCCTA 59.661 37.037 0.00 0.00 32.18 2.94
3785 3881 9.413734 CAGAAATGGGAGTTAAAAGAATCCTAT 57.586 33.333 0.00 0.00 34.80 2.57
3786 3882 9.413734 AGAAATGGGAGTTAAAAGAATCCTATG 57.586 33.333 0.00 0.00 33.75 2.23
3787 3883 9.408648 GAAATGGGAGTTAAAAGAATCCTATGA 57.591 33.333 0.00 0.00 33.75 2.15
3788 3884 9.768215 AAATGGGAGTTAAAAGAATCCTATGAA 57.232 29.630 0.00 0.00 33.75 2.57
3789 3885 9.768215 AATGGGAGTTAAAAGAATCCTATGAAA 57.232 29.630 0.00 0.00 33.75 2.69
3790 3886 9.942526 ATGGGAGTTAAAAGAATCCTATGAAAT 57.057 29.630 0.00 0.00 32.40 2.17
3791 3887 9.768215 TGGGAGTTAAAAGAATCCTATGAAATT 57.232 29.630 0.00 0.00 32.18 1.82
3803 3899 9.136952 GAATCCTATGAAATTAGATTGCAATGC 57.863 33.333 18.59 8.63 30.03 3.56
3804 3900 7.828508 TCCTATGAAATTAGATTGCAATGCT 57.171 32.000 18.59 15.37 30.03 3.79
3805 3901 7.879070 TCCTATGAAATTAGATTGCAATGCTC 58.121 34.615 18.59 3.14 30.03 4.26
3806 3902 7.503230 TCCTATGAAATTAGATTGCAATGCTCA 59.497 33.333 18.59 9.89 30.03 4.26
3807 3903 8.304596 CCTATGAAATTAGATTGCAATGCTCAT 58.695 33.333 18.59 15.52 30.03 2.90
3808 3904 9.692749 CTATGAAATTAGATTGCAATGCTCATT 57.307 29.630 18.59 13.01 30.03 2.57
3811 3907 9.687210 TGAAATTAGATTGCAATGCTCATTATC 57.313 29.630 18.59 14.36 0.00 1.75
3812 3908 9.909644 GAAATTAGATTGCAATGCTCATTATCT 57.090 29.630 18.59 7.65 31.92 1.98
3813 3909 9.692749 AAATTAGATTGCAATGCTCATTATCTG 57.307 29.630 18.59 0.00 30.53 2.90
3814 3910 8.631480 ATTAGATTGCAATGCTCATTATCTGA 57.369 30.769 18.59 2.17 30.53 3.27
3830 3926 9.730705 TCATTATCTGAGATCACAAGTTTTCTT 57.269 29.630 0.00 0.00 41.31 2.52
3846 3942 8.770438 AAGTTTTCTTGTTTAGTTGCATCAAA 57.230 26.923 0.00 0.00 38.88 2.69
3847 3943 8.947055 AGTTTTCTTGTTTAGTTGCATCAAAT 57.053 26.923 0.00 0.00 0.00 2.32
3848 3944 8.819974 AGTTTTCTTGTTTAGTTGCATCAAATG 58.180 29.630 0.00 0.00 0.00 2.32
3849 3945 8.603181 GTTTTCTTGTTTAGTTGCATCAAATGT 58.397 29.630 0.00 0.00 0.00 2.71
3850 3946 8.715191 TTTCTTGTTTAGTTGCATCAAATGTT 57.285 26.923 0.00 0.00 0.00 2.71
3851 3947 9.809096 TTTCTTGTTTAGTTGCATCAAATGTTA 57.191 25.926 0.00 0.00 0.00 2.41
3852 3948 8.795786 TCTTGTTTAGTTGCATCAAATGTTAC 57.204 30.769 0.00 0.00 0.00 2.50
3853 3949 8.629158 TCTTGTTTAGTTGCATCAAATGTTACT 58.371 29.630 0.00 0.00 33.11 2.24
3854 3950 8.572828 TTGTTTAGTTGCATCAAATGTTACTG 57.427 30.769 0.00 0.00 31.68 2.74
3855 3951 7.144661 TGTTTAGTTGCATCAAATGTTACTGG 58.855 34.615 0.00 0.00 31.68 4.00
3856 3952 6.892658 TTAGTTGCATCAAATGTTACTGGT 57.107 33.333 0.00 0.00 31.68 4.00
3857 3953 7.987750 TTAGTTGCATCAAATGTTACTGGTA 57.012 32.000 0.00 0.00 31.68 3.25
3858 3954 6.892658 AGTTGCATCAAATGTTACTGGTAA 57.107 33.333 0.00 0.00 0.00 2.85
3859 3955 6.677913 AGTTGCATCAAATGTTACTGGTAAC 58.322 36.000 14.51 14.51 44.16 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.266055 CCCCGCTCGAAGCTTCTT 59.734 61.111 23.50 0.00 39.60 2.52
3 4 4.459089 GAGCCCCGCTCGAAGCTT 62.459 66.667 0.00 0.00 45.85 3.74
18 19 0.318275 GAGATCGCCTGGCTAACGAG 60.318 60.000 17.92 0.00 39.48 4.18
20 21 0.179111 TTGAGATCGCCTGGCTAACG 60.179 55.000 17.92 0.47 0.00 3.18
42 43 0.400213 ACAAAGGGATCCGTTGCTCA 59.600 50.000 19.99 0.00 44.58 4.26
126 133 4.491675 AGATGCATAGATCTGAGGTTCCT 58.508 43.478 5.18 0.00 31.14 3.36
157 166 2.395619 CTCAACCCTAACCCTACCGAT 58.604 52.381 0.00 0.00 0.00 4.18
219 245 2.048503 CCCGTCTGACCGTGAACC 60.049 66.667 1.55 0.00 0.00 3.62
238 264 1.410882 GCTCCTAGACGAAGGCAAGAT 59.589 52.381 0.00 0.00 36.51 2.40
261 287 2.365635 CGAGGATCCCCCACCTGT 60.366 66.667 8.55 0.00 36.57 4.00
351 379 2.290641 TGTTTGTCTCCACACAACCACT 60.291 45.455 0.00 0.00 35.97 4.00
371 401 7.569240 ACTTATACCAAGGAGGAAGAAGAATG 58.431 38.462 0.00 0.00 41.22 2.67
385 421 9.581099 AGAACAACAACAAAAACTTATACCAAG 57.419 29.630 0.00 0.00 0.00 3.61
395 431 5.720202 AGGAGGAAGAACAACAACAAAAAC 58.280 37.500 0.00 0.00 0.00 2.43
602 642 1.703411 CTTCCCAACTTCTTTGCCCA 58.297 50.000 0.00 0.00 33.34 5.36
604 644 1.000171 CTGCTTCCCAACTTCTTTGCC 60.000 52.381 0.00 0.00 33.34 4.52
687 728 0.394192 TGAGGAGACCACTGCAACAG 59.606 55.000 0.00 0.00 36.93 3.16
696 738 2.637872 CCTTAACCTTGTGAGGAGACCA 59.362 50.000 0.00 0.00 46.74 4.02
747 796 2.159310 CCTCAAACAACCAGCAAAACGA 60.159 45.455 0.00 0.00 0.00 3.85
748 797 2.192624 CCTCAAACAACCAGCAAAACG 58.807 47.619 0.00 0.00 0.00 3.60
808 860 1.467342 GCTTTAAACCCGAACGAGCAT 59.533 47.619 0.00 0.00 0.00 3.79
813 865 3.343380 ACAAAGCTTTAAACCCGAACG 57.657 42.857 12.25 0.00 0.00 3.95
827 879 8.841444 ATTCAAATCACGACATAATACAAAGC 57.159 30.769 0.00 0.00 0.00 3.51
893 945 9.756571 TCTTTGAGAAGGAAGAGTACTATACTT 57.243 33.333 5.51 5.51 34.81 2.24
894 946 9.403583 CTCTTTGAGAAGGAAGAGTACTATACT 57.596 37.037 0.00 0.00 36.21 2.12
895 947 9.398538 TCTCTTTGAGAAGGAAGAGTACTATAC 57.601 37.037 11.54 0.00 39.66 1.47
896 948 9.976776 TTCTCTTTGAGAAGGAAGAGTACTATA 57.023 33.333 11.54 0.00 42.78 1.31
897 949 8.887264 TTCTCTTTGAGAAGGAAGAGTACTAT 57.113 34.615 11.54 0.00 42.78 2.12
933 985 4.745125 CCACAGCACCGAAGTACTATATTG 59.255 45.833 0.00 0.00 0.00 1.90
935 987 3.321111 CCCACAGCACCGAAGTACTATAT 59.679 47.826 0.00 0.00 0.00 0.86
938 990 0.892755 CCCACAGCACCGAAGTACTA 59.107 55.000 0.00 0.00 0.00 1.82
939 991 0.830444 TCCCACAGCACCGAAGTACT 60.830 55.000 0.00 0.00 0.00 2.73
940 992 0.034337 TTCCCACAGCACCGAAGTAC 59.966 55.000 0.00 0.00 0.00 2.73
946 998 2.738521 CGACTTCCCACAGCACCG 60.739 66.667 0.00 0.00 0.00 4.94
947 999 3.050275 GCGACTTCCCACAGCACC 61.050 66.667 0.00 0.00 0.00 5.01
951 1003 3.414700 GCACGCGACTTCCCACAG 61.415 66.667 15.93 0.00 0.00 3.66
952 1004 3.529341 ATGCACGCGACTTCCCACA 62.529 57.895 15.93 0.00 0.00 4.17
995 1047 1.524621 CCTGCCGTGCCCATTAGAG 60.525 63.158 0.00 0.00 0.00 2.43
1098 1150 1.066587 GCTGAGGTATTCGAGCGCT 59.933 57.895 11.27 11.27 0.00 5.92
1534 1586 4.326058 GACGCGCATTTTGTCGAG 57.674 55.556 5.73 0.00 0.00 4.04
1557 1609 3.005155 ACACAGAAGCTTTGCAATCCTTC 59.995 43.478 22.36 22.36 35.19 3.46
1680 1732 4.778143 ATCCTGTTCGGCGCCACC 62.778 66.667 28.98 13.78 0.00 4.61
1770 1822 2.607282 CGTGTCTGGCTTAAACGAGTCT 60.607 50.000 0.00 0.00 36.38 3.24
1810 1862 4.722855 GCCACAATGTGCGGCCAC 62.723 66.667 8.05 0.00 39.57 5.01
1937 1989 0.605589 CTCAGCCTTCACGAACTCCT 59.394 55.000 0.00 0.00 0.00 3.69
2101 2153 1.333636 ACCTTGCTCCTCCGATCCAG 61.334 60.000 0.00 0.00 0.00 3.86
2166 2218 4.263771 TGGTACCCTTCTTCAAAATCTCCC 60.264 45.833 10.07 0.00 0.00 4.30
2202 2254 3.760684 GCACAAGATCCCTCTTCAACATT 59.239 43.478 0.00 0.00 39.78 2.71
2466 2518 3.242712 GGTTGCTTTTGAACAATGTGTCG 59.757 43.478 0.00 0.00 0.00 4.35
2470 2522 7.224557 GTCATTTAGGTTGCTTTTGAACAATGT 59.775 33.333 0.00 0.00 0.00 2.71
2643 2695 1.600957 ACCGTACTGGATATCGACACG 59.399 52.381 10.17 9.06 42.00 4.49
2719 2771 2.079925 GCTTCCGCTCTCAATGAGTTT 58.920 47.619 10.36 0.00 44.41 2.66
2806 2858 5.594926 ACCAACAAAATCAGCTTCTTTCTG 58.405 37.500 0.00 0.00 0.00 3.02
2828 2880 0.370273 CGCACGCCTCATCTGTTTAC 59.630 55.000 0.00 0.00 0.00 2.01
2881 2935 1.158007 AGTGGTTCCTGGGGAAATGT 58.842 50.000 0.19 0.00 43.86 2.71
2887 2941 1.133482 AGTTTGAAGTGGTTCCTGGGG 60.133 52.381 0.00 0.00 0.00 4.96
2899 2953 3.603532 TGGAGCAGCATAGAGTTTGAAG 58.396 45.455 0.00 0.00 0.00 3.02
2911 2965 0.108662 CGAGTGTGTATGGAGCAGCA 60.109 55.000 0.00 0.00 0.00 4.41
2913 2967 0.807667 GCCGAGTGTGTATGGAGCAG 60.808 60.000 0.00 0.00 0.00 4.24
2916 2970 0.537188 AAGGCCGAGTGTGTATGGAG 59.463 55.000 0.00 0.00 0.00 3.86
2920 2974 1.346395 TGTTCAAGGCCGAGTGTGTAT 59.654 47.619 0.00 0.00 0.00 2.29
2984 3040 2.598589 CATTTCTTGTCATGCGGTTGG 58.401 47.619 0.00 0.00 0.00 3.77
2992 3048 3.261580 TCGACGATGCATTTCTTGTCAT 58.738 40.909 0.00 0.00 0.00 3.06
3005 3061 4.611943 ACATCTAACATTCCTCGACGATG 58.388 43.478 0.00 0.00 34.69 3.84
3084 3140 1.047801 ACAATGGTCCAAGCAAACCC 58.952 50.000 0.00 0.00 34.47 4.11
3096 3152 2.352421 CGAAGTCTGACCGTACAATGGT 60.352 50.000 3.76 0.00 40.99 3.55
3103 3159 2.074576 CTGTCTCGAAGTCTGACCGTA 58.925 52.381 3.76 0.00 0.00 4.02
3105 3161 1.157585 TCTGTCTCGAAGTCTGACCG 58.842 55.000 3.76 2.08 0.00 4.79
3108 3164 4.261656 GGTTCTTTCTGTCTCGAAGTCTGA 60.262 45.833 0.00 0.00 0.00 3.27
3139 3195 3.190079 GACAAGCTTATGATGTCGCAGA 58.810 45.455 0.00 0.00 34.72 4.26
3148 3204 2.877097 TGGCCTTGACAAGCTTATGA 57.123 45.000 9.85 0.00 0.00 2.15
3167 3223 3.700038 AGAAGAAACGTACCAGATCGGAT 59.300 43.478 10.05 0.00 38.63 4.18
3170 3226 4.092771 TGAGAAGAAACGTACCAGATCG 57.907 45.455 0.00 0.00 0.00 3.69
3181 3237 0.884514 GGCTGCCCTTGAGAAGAAAC 59.115 55.000 7.66 0.00 0.00 2.78
3182 3238 0.251341 GGGCTGCCCTTGAGAAGAAA 60.251 55.000 30.42 0.00 41.34 2.52
3197 3253 0.842030 TCATCTGGTTGGACAGGGCT 60.842 55.000 0.00 0.00 38.98 5.19
3208 3264 7.528996 TTTCAATCACTTCATTTCATCTGGT 57.471 32.000 0.00 0.00 0.00 4.00
3254 3313 3.496507 GTGAACCTGCTCTTCAAAGTCTC 59.503 47.826 0.00 0.00 29.44 3.36
3275 3334 3.118884 GGATGCATGCTTTGATTTCCAGT 60.119 43.478 20.33 0.00 0.00 4.00
3281 3340 1.483415 GGGTGGATGCATGCTTTGATT 59.517 47.619 20.33 0.00 0.00 2.57
3290 3349 7.121382 CCAATAAGATTATAGGGTGGATGCAT 58.879 38.462 0.00 0.00 0.00 3.96
3294 3353 6.718593 TGCCAATAAGATTATAGGGTGGAT 57.281 37.500 5.56 0.00 0.00 3.41
3304 3365 8.859090 CATATGGACCTTTTGCCAATAAGATTA 58.141 33.333 0.00 0.00 37.78 1.75
3309 3370 5.068987 GCTCATATGGACCTTTTGCCAATAA 59.931 40.000 2.13 0.00 37.78 1.40
3310 3371 4.584325 GCTCATATGGACCTTTTGCCAATA 59.416 41.667 2.13 0.00 37.78 1.90
3336 3398 1.129326 GTGAACTCAACGAGTCACCG 58.871 55.000 12.06 0.00 42.59 4.94
3344 3407 1.792949 GCCAGTACTGTGAACTCAACG 59.207 52.381 21.18 3.35 0.00 4.10
3346 3409 3.111853 CAGCCAGTACTGTGAACTCAA 57.888 47.619 21.18 0.00 32.78 3.02
3360 3423 1.068748 GCAAATGTGTCTGACAGCCAG 60.069 52.381 11.41 2.09 44.27 4.85
3411 3474 2.354510 GCACACTGCAAAGAACTGTACA 59.645 45.455 0.00 0.00 44.26 2.90
3412 3475 2.599848 CGCACACTGCAAAGAACTGTAC 60.600 50.000 0.00 0.00 45.36 2.90
3413 3476 1.597195 CGCACACTGCAAAGAACTGTA 59.403 47.619 0.00 0.00 45.36 2.74
3414 3477 0.378257 CGCACACTGCAAAGAACTGT 59.622 50.000 0.00 0.00 45.36 3.55
3418 3481 0.937304 GACTCGCACACTGCAAAGAA 59.063 50.000 0.00 0.00 45.36 2.52
3433 3496 1.134965 CAACGACAGGGATGAGGACTC 60.135 57.143 0.00 0.00 0.00 3.36
3467 3562 3.053831 TGTTTAGCTCCCTAACTGCAC 57.946 47.619 0.00 0.00 33.43 4.57
3469 3564 2.945668 CCATGTTTAGCTCCCTAACTGC 59.054 50.000 0.00 0.00 33.43 4.40
3511 3606 6.763355 TCAGAGCAAGAGTACTTTGAAGATT 58.237 36.000 16.88 2.65 33.70 2.40
3516 3611 5.791336 TCTTCAGAGCAAGAGTACTTTGA 57.209 39.130 16.88 3.77 33.70 2.69
3517 3612 5.580297 GGATCTTCAGAGCAAGAGTACTTTG 59.420 44.000 0.00 5.23 35.83 2.77
3518 3613 5.623368 CGGATCTTCAGAGCAAGAGTACTTT 60.623 44.000 0.00 0.00 35.83 2.66
3524 3619 2.928757 CAACGGATCTTCAGAGCAAGAG 59.071 50.000 0.00 0.00 35.83 2.85
3533 3628 3.981071 ATCTTCCACAACGGATCTTCA 57.019 42.857 0.00 0.00 45.80 3.02
3536 3631 2.103263 GCCTATCTTCCACAACGGATCT 59.897 50.000 0.00 0.00 45.80 2.75
3543 3638 3.055094 GGTCTTCAGCCTATCTTCCACAA 60.055 47.826 0.00 0.00 0.00 3.33
3544 3639 2.501723 GGTCTTCAGCCTATCTTCCACA 59.498 50.000 0.00 0.00 0.00 4.17
3545 3640 2.158885 GGGTCTTCAGCCTATCTTCCAC 60.159 54.545 0.00 0.00 37.19 4.02
3546 3641 2.119495 GGGTCTTCAGCCTATCTTCCA 58.881 52.381 0.00 0.00 37.19 3.53
3547 3642 2.103941 CTGGGTCTTCAGCCTATCTTCC 59.896 54.545 0.00 0.00 41.28 3.46
3567 3663 2.047560 GGCGTACCGAACAAGGCT 60.048 61.111 0.00 0.00 33.69 4.58
3578 3674 4.776743 CATTCTTGCTAATGATGGCGTAC 58.223 43.478 2.08 0.00 38.84 3.67
3581 3677 2.658285 GCATTCTTGCTAATGATGGCG 58.342 47.619 10.07 0.00 45.77 5.69
3593 3689 3.057033 CAGAAAGTTCCCAGGCATTCTTG 60.057 47.826 0.00 0.00 0.00 3.02
3594 3690 3.160269 CAGAAAGTTCCCAGGCATTCTT 58.840 45.455 0.00 0.00 0.00 2.52
3595 3691 2.108952 ACAGAAAGTTCCCAGGCATTCT 59.891 45.455 0.00 0.00 0.00 2.40
3596 3692 2.519013 ACAGAAAGTTCCCAGGCATTC 58.481 47.619 0.00 0.00 0.00 2.67
3597 3693 2.683211 ACAGAAAGTTCCCAGGCATT 57.317 45.000 0.00 0.00 0.00 3.56
3598 3694 2.683211 AACAGAAAGTTCCCAGGCAT 57.317 45.000 0.00 0.00 34.74 4.40
3599 3695 2.430332 CAAAACAGAAAGTTCCCAGGCA 59.570 45.455 0.00 0.00 40.26 4.75
3600 3696 2.693074 TCAAAACAGAAAGTTCCCAGGC 59.307 45.455 0.00 0.00 40.26 4.85
3601 3697 3.699038 TGTCAAAACAGAAAGTTCCCAGG 59.301 43.478 0.00 0.00 40.26 4.45
3602 3698 4.399303 AGTGTCAAAACAGAAAGTTCCCAG 59.601 41.667 0.00 0.00 40.26 4.45
3603 3699 4.340617 AGTGTCAAAACAGAAAGTTCCCA 58.659 39.130 0.00 0.00 40.26 4.37
3604 3700 4.983671 AGTGTCAAAACAGAAAGTTCCC 57.016 40.909 0.00 0.00 40.26 3.97
3605 3701 5.949735 TGAAGTGTCAAAACAGAAAGTTCC 58.050 37.500 0.00 0.00 40.26 3.62
3618 3714 6.831353 TGAATAAAGGAGGTTTGAAGTGTCAA 59.169 34.615 0.00 0.00 42.12 3.18
3619 3715 6.361433 TGAATAAAGGAGGTTTGAAGTGTCA 58.639 36.000 0.00 0.00 0.00 3.58
3620 3716 6.877611 TGAATAAAGGAGGTTTGAAGTGTC 57.122 37.500 0.00 0.00 0.00 3.67
3621 3717 7.839680 AATGAATAAAGGAGGTTTGAAGTGT 57.160 32.000 0.00 0.00 0.00 3.55
3622 3718 9.626045 GTAAATGAATAAAGGAGGTTTGAAGTG 57.374 33.333 0.00 0.00 0.00 3.16
3623 3719 8.803235 GGTAAATGAATAAAGGAGGTTTGAAGT 58.197 33.333 0.00 0.00 0.00 3.01
3624 3720 8.802267 TGGTAAATGAATAAAGGAGGTTTGAAG 58.198 33.333 0.00 0.00 0.00 3.02
3625 3721 8.713708 TGGTAAATGAATAAAGGAGGTTTGAA 57.286 30.769 0.00 0.00 0.00 2.69
3626 3722 8.167392 TCTGGTAAATGAATAAAGGAGGTTTGA 58.833 33.333 0.00 0.00 0.00 2.69
3627 3723 8.348285 TCTGGTAAATGAATAAAGGAGGTTTG 57.652 34.615 0.00 0.00 0.00 2.93
3628 3724 8.950007 TTCTGGTAAATGAATAAAGGAGGTTT 57.050 30.769 0.00 0.00 0.00 3.27
3629 3725 8.971073 CATTCTGGTAAATGAATAAAGGAGGTT 58.029 33.333 0.00 0.00 38.64 3.50
3630 3726 7.561356 CCATTCTGGTAAATGAATAAAGGAGGT 59.439 37.037 0.00 0.00 38.64 3.85
3631 3727 7.945134 CCATTCTGGTAAATGAATAAAGGAGG 58.055 38.462 0.00 0.00 38.64 4.30
3646 3742 7.736810 CTTGTAAACAATGCAACCATTCTGGTA 60.737 37.037 0.00 0.00 41.89 3.25
3647 3743 6.959844 CTTGTAAACAATGCAACCATTCTGGT 60.960 38.462 0.00 0.00 43.45 4.00
3648 3744 4.880759 TGTAAACAATGCAACCATTCTGG 58.119 39.130 0.00 0.00 45.02 3.86
3649 3745 5.107375 GCTTGTAAACAATGCAACCATTCTG 60.107 40.000 0.00 0.00 39.60 3.02
3650 3746 4.990426 GCTTGTAAACAATGCAACCATTCT 59.010 37.500 0.00 0.00 39.60 2.40
3651 3747 4.749099 TGCTTGTAAACAATGCAACCATTC 59.251 37.500 13.76 0.00 39.60 2.67
3652 3748 4.701765 TGCTTGTAAACAATGCAACCATT 58.298 34.783 13.76 0.00 42.26 3.16
3653 3749 4.333913 TGCTTGTAAACAATGCAACCAT 57.666 36.364 13.76 0.00 37.20 3.55
3654 3750 3.808466 TGCTTGTAAACAATGCAACCA 57.192 38.095 13.76 0.00 37.20 3.67
3655 3751 5.708948 TCTATGCTTGTAAACAATGCAACC 58.291 37.500 17.60 0.00 40.50 3.77
3656 3752 7.636259 TTTCTATGCTTGTAAACAATGCAAC 57.364 32.000 17.60 0.00 40.50 4.17
3657 3753 8.830201 AATTTCTATGCTTGTAAACAATGCAA 57.170 26.923 17.60 7.22 40.50 4.08
3658 3754 9.352784 GTAATTTCTATGCTTGTAAACAATGCA 57.647 29.630 16.63 16.63 40.96 3.96
3659 3755 9.352784 TGTAATTTCTATGCTTGTAAACAATGC 57.647 29.630 0.00 3.69 35.02 3.56
3661 3757 9.573133 GCTGTAATTTCTATGCTTGTAAACAAT 57.427 29.630 0.00 0.00 35.02 2.71
3662 3758 8.026607 GGCTGTAATTTCTATGCTTGTAAACAA 58.973 33.333 0.00 0.00 0.00 2.83
3663 3759 7.393234 AGGCTGTAATTTCTATGCTTGTAAACA 59.607 33.333 0.00 0.00 0.00 2.83
3664 3760 7.762382 AGGCTGTAATTTCTATGCTTGTAAAC 58.238 34.615 0.00 0.00 0.00 2.01
3665 3761 7.938140 AGGCTGTAATTTCTATGCTTGTAAA 57.062 32.000 0.00 0.00 0.00 2.01
3666 3762 9.109393 CTTAGGCTGTAATTTCTATGCTTGTAA 57.891 33.333 0.00 0.00 0.00 2.41
3667 3763 8.265055 ACTTAGGCTGTAATTTCTATGCTTGTA 58.735 33.333 0.00 0.00 0.00 2.41
3668 3764 7.112779 ACTTAGGCTGTAATTTCTATGCTTGT 58.887 34.615 0.00 0.00 0.00 3.16
3669 3765 7.559590 ACTTAGGCTGTAATTTCTATGCTTG 57.440 36.000 0.00 0.00 0.00 4.01
3670 3766 8.705594 TCTACTTAGGCTGTAATTTCTATGCTT 58.294 33.333 0.00 0.00 0.00 3.91
3671 3767 8.251383 TCTACTTAGGCTGTAATTTCTATGCT 57.749 34.615 0.00 0.00 0.00 3.79
3672 3768 8.930760 CATCTACTTAGGCTGTAATTTCTATGC 58.069 37.037 0.00 0.00 0.00 3.14
3673 3769 9.429359 CCATCTACTTAGGCTGTAATTTCTATG 57.571 37.037 0.00 0.00 0.00 2.23
3674 3770 8.097662 GCCATCTACTTAGGCTGTAATTTCTAT 58.902 37.037 0.00 0.00 44.92 1.98
3675 3771 7.442656 GCCATCTACTTAGGCTGTAATTTCTA 58.557 38.462 0.00 0.00 44.92 2.10
3676 3772 6.292150 GCCATCTACTTAGGCTGTAATTTCT 58.708 40.000 0.00 0.00 44.92 2.52
3677 3773 6.546972 GCCATCTACTTAGGCTGTAATTTC 57.453 41.667 0.00 0.00 44.92 2.17
3687 3783 7.196331 GCTTTATTGTTTGCCATCTACTTAGG 58.804 38.462 0.00 0.00 0.00 2.69
3688 3784 7.196331 GGCTTTATTGTTTGCCATCTACTTAG 58.804 38.462 0.00 0.00 44.34 2.18
3689 3785 7.095695 GGCTTTATTGTTTGCCATCTACTTA 57.904 36.000 0.00 0.00 44.34 2.24
3690 3786 5.965922 GGCTTTATTGTTTGCCATCTACTT 58.034 37.500 0.00 0.00 44.34 2.24
3691 3787 5.582689 GGCTTTATTGTTTGCCATCTACT 57.417 39.130 0.00 0.00 44.34 2.57
3698 3794 1.899142 TCCCAGGCTTTATTGTTTGCC 59.101 47.619 0.00 0.00 45.21 4.52
3699 3795 3.006859 AGTTCCCAGGCTTTATTGTTTGC 59.993 43.478 0.00 0.00 0.00 3.68
3700 3796 4.871933 AGTTCCCAGGCTTTATTGTTTG 57.128 40.909 0.00 0.00 0.00 2.93
3701 3797 4.283467 GGAAGTTCCCAGGCTTTATTGTTT 59.717 41.667 11.17 0.00 0.00 2.83
3702 3798 3.832490 GGAAGTTCCCAGGCTTTATTGTT 59.168 43.478 11.17 0.00 0.00 2.83
3703 3799 3.076032 AGGAAGTTCCCAGGCTTTATTGT 59.924 43.478 18.65 0.00 37.19 2.71
3704 3800 3.701664 AGGAAGTTCCCAGGCTTTATTG 58.298 45.455 18.65 0.00 37.19 1.90
3705 3801 4.404185 AAGGAAGTTCCCAGGCTTTATT 57.596 40.909 18.65 0.00 37.19 1.40
3706 3802 4.202673 TGAAAGGAAGTTCCCAGGCTTTAT 60.203 41.667 18.65 0.00 37.19 1.40
3707 3803 3.139397 TGAAAGGAAGTTCCCAGGCTTTA 59.861 43.478 18.65 0.00 37.19 1.85
3708 3804 2.091333 TGAAAGGAAGTTCCCAGGCTTT 60.091 45.455 18.65 11.61 37.19 3.51
3709 3805 1.499007 TGAAAGGAAGTTCCCAGGCTT 59.501 47.619 18.65 2.84 37.19 4.35
3710 3806 1.074566 CTGAAAGGAAGTTCCCAGGCT 59.925 52.381 18.65 0.00 37.19 4.58
3711 3807 1.202940 ACTGAAAGGAAGTTCCCAGGC 60.203 52.381 22.90 11.36 37.19 4.85
3712 3808 2.508526 CACTGAAAGGAAGTTCCCAGG 58.491 52.381 22.90 12.76 37.19 4.45
3713 3809 1.882623 GCACTGAAAGGAAGTTCCCAG 59.117 52.381 18.65 19.14 37.19 4.45
3714 3810 1.478654 GGCACTGAAAGGAAGTTCCCA 60.479 52.381 18.65 8.60 37.19 4.37
3715 3811 1.248486 GGCACTGAAAGGAAGTTCCC 58.752 55.000 18.65 4.00 37.19 3.97
3716 3812 1.981256 TGGCACTGAAAGGAAGTTCC 58.019 50.000 14.54 14.54 39.30 3.62
3717 3813 3.214328 TCTTGGCACTGAAAGGAAGTTC 58.786 45.455 0.00 0.00 39.30 3.01
3718 3814 3.297134 TCTTGGCACTGAAAGGAAGTT 57.703 42.857 0.00 0.00 39.30 2.66
3719 3815 3.515602 ATCTTGGCACTGAAAGGAAGT 57.484 42.857 0.00 0.00 39.30 3.01
3720 3816 4.326826 TGTATCTTGGCACTGAAAGGAAG 58.673 43.478 0.00 0.00 39.30 3.46
3721 3817 4.365514 TGTATCTTGGCACTGAAAGGAA 57.634 40.909 0.00 0.00 39.30 3.36
3722 3818 4.202461 ACTTGTATCTTGGCACTGAAAGGA 60.202 41.667 0.00 0.00 39.30 3.36
3723 3819 4.074970 ACTTGTATCTTGGCACTGAAAGG 58.925 43.478 0.00 0.00 39.30 3.11
3724 3820 5.471456 AGAACTTGTATCTTGGCACTGAAAG 59.529 40.000 0.00 0.00 42.29 2.62
3725 3821 5.376625 AGAACTTGTATCTTGGCACTGAAA 58.623 37.500 0.00 0.00 0.00 2.69
3726 3822 4.973168 AGAACTTGTATCTTGGCACTGAA 58.027 39.130 0.00 0.00 0.00 3.02
3727 3823 4.623932 AGAACTTGTATCTTGGCACTGA 57.376 40.909 0.00 0.00 0.00 3.41
3728 3824 5.695851 AAAGAACTTGTATCTTGGCACTG 57.304 39.130 0.00 0.00 37.22 3.66
3729 3825 6.715347 AAAAAGAACTTGTATCTTGGCACT 57.285 33.333 0.00 0.00 37.22 4.40
3752 3848 5.772393 TTAACTCCCATTTCTGCCTAGAA 57.228 39.130 0.00 0.00 41.06 2.10
3753 3849 5.772393 TTTAACTCCCATTTCTGCCTAGA 57.228 39.130 0.00 0.00 0.00 2.43
3754 3850 6.180472 TCTTTTAACTCCCATTTCTGCCTAG 58.820 40.000 0.00 0.00 0.00 3.02
3755 3851 6.134535 TCTTTTAACTCCCATTTCTGCCTA 57.865 37.500 0.00 0.00 0.00 3.93
3756 3852 4.998051 TCTTTTAACTCCCATTTCTGCCT 58.002 39.130 0.00 0.00 0.00 4.75
3757 3853 5.722021 TTCTTTTAACTCCCATTTCTGCC 57.278 39.130 0.00 0.00 0.00 4.85
3758 3854 6.153510 AGGATTCTTTTAACTCCCATTTCTGC 59.846 38.462 0.00 0.00 0.00 4.26
3759 3855 7.709149 AGGATTCTTTTAACTCCCATTTCTG 57.291 36.000 0.00 0.00 0.00 3.02
3760 3856 9.413734 CATAGGATTCTTTTAACTCCCATTTCT 57.586 33.333 0.00 0.00 0.00 2.52
3761 3857 9.408648 TCATAGGATTCTTTTAACTCCCATTTC 57.591 33.333 0.00 0.00 0.00 2.17
3762 3858 9.768215 TTCATAGGATTCTTTTAACTCCCATTT 57.232 29.630 0.00 0.00 0.00 2.32
3763 3859 9.768215 TTTCATAGGATTCTTTTAACTCCCATT 57.232 29.630 0.00 0.00 0.00 3.16
3764 3860 9.942526 ATTTCATAGGATTCTTTTAACTCCCAT 57.057 29.630 0.00 0.00 0.00 4.00
3765 3861 9.768215 AATTTCATAGGATTCTTTTAACTCCCA 57.232 29.630 0.00 0.00 0.00 4.37
3777 3873 9.136952 GCATTGCAATCTAATTTCATAGGATTC 57.863 33.333 9.53 0.00 0.00 2.52
3778 3874 8.867097 AGCATTGCAATCTAATTTCATAGGATT 58.133 29.630 9.53 0.00 0.00 3.01
3779 3875 8.418597 AGCATTGCAATCTAATTTCATAGGAT 57.581 30.769 9.53 0.00 0.00 3.24
3780 3876 7.503230 TGAGCATTGCAATCTAATTTCATAGGA 59.497 33.333 9.53 0.00 0.00 2.94
3781 3877 7.654568 TGAGCATTGCAATCTAATTTCATAGG 58.345 34.615 9.53 0.00 0.00 2.57
3782 3878 9.692749 AATGAGCATTGCAATCTAATTTCATAG 57.307 29.630 9.53 0.00 0.00 2.23
3785 3881 9.687210 GATAATGAGCATTGCAATCTAATTTCA 57.313 29.630 18.67 12.93 32.50 2.69
3786 3882 9.909644 AGATAATGAGCATTGCAATCTAATTTC 57.090 29.630 18.67 15.99 32.50 2.17
3787 3883 9.692749 CAGATAATGAGCATTGCAATCTAATTT 57.307 29.630 18.67 10.64 28.14 1.82
3788 3884 9.074576 TCAGATAATGAGCATTGCAATCTAATT 57.925 29.630 9.53 15.36 32.77 1.40
3789 3885 8.631480 TCAGATAATGAGCATTGCAATCTAAT 57.369 30.769 9.53 6.00 32.77 1.73
3804 3900 9.730705 AAGAAAACTTGTGATCTCAGATAATGA 57.269 29.630 0.00 0.00 36.21 2.57
3805 3901 9.770503 CAAGAAAACTTGTGATCTCAGATAATG 57.229 33.333 0.00 0.00 0.00 1.90
3806 3902 9.512588 ACAAGAAAACTTGTGATCTCAGATAAT 57.487 29.630 13.57 0.00 44.79 1.28
3807 3903 8.908786 ACAAGAAAACTTGTGATCTCAGATAA 57.091 30.769 13.57 0.00 44.79 1.75
3808 3904 8.908786 AACAAGAAAACTTGTGATCTCAGATA 57.091 30.769 14.76 0.00 45.64 1.98
3809 3905 7.814264 AACAAGAAAACTTGTGATCTCAGAT 57.186 32.000 14.76 0.00 45.64 2.90
3810 3906 7.630242 AAACAAGAAAACTTGTGATCTCAGA 57.370 32.000 14.76 0.00 45.64 3.27
3811 3907 8.616076 ACTAAACAAGAAAACTTGTGATCTCAG 58.384 33.333 14.76 9.10 45.64 3.35
3812 3908 8.506168 ACTAAACAAGAAAACTTGTGATCTCA 57.494 30.769 14.76 0.00 45.64 3.27
3813 3909 9.226345 CAACTAAACAAGAAAACTTGTGATCTC 57.774 33.333 14.76 0.00 45.64 2.75
3814 3910 7.702348 GCAACTAAACAAGAAAACTTGTGATCT 59.298 33.333 14.76 5.02 45.64 2.75
3815 3911 7.487829 TGCAACTAAACAAGAAAACTTGTGATC 59.512 33.333 14.76 0.00 45.64 2.92
3816 3912 7.319646 TGCAACTAAACAAGAAAACTTGTGAT 58.680 30.769 14.76 10.29 45.64 3.06
3817 3913 6.682746 TGCAACTAAACAAGAAAACTTGTGA 58.317 32.000 14.76 6.97 45.64 3.58
3818 3914 6.942886 TGCAACTAAACAAGAAAACTTGTG 57.057 33.333 14.76 6.82 45.64 3.33
3820 3916 7.754069 TGATGCAACTAAACAAGAAAACTTG 57.246 32.000 8.18 8.18 39.98 3.16
3821 3917 8.770438 TTTGATGCAACTAAACAAGAAAACTT 57.230 26.923 0.00 0.00 0.00 2.66
3822 3918 8.819974 CATTTGATGCAACTAAACAAGAAAACT 58.180 29.630 0.00 0.00 0.00 2.66
3823 3919 8.603181 ACATTTGATGCAACTAAACAAGAAAAC 58.397 29.630 0.00 0.00 0.00 2.43
3824 3920 8.715191 ACATTTGATGCAACTAAACAAGAAAA 57.285 26.923 0.00 0.00 0.00 2.29
3825 3921 8.715191 AACATTTGATGCAACTAAACAAGAAA 57.285 26.923 0.00 0.00 0.00 2.52
3826 3922 9.243637 GTAACATTTGATGCAACTAAACAAGAA 57.756 29.630 0.00 0.00 0.00 2.52
3827 3923 8.629158 AGTAACATTTGATGCAACTAAACAAGA 58.371 29.630 0.00 0.00 29.79 3.02
3828 3924 8.693504 CAGTAACATTTGATGCAACTAAACAAG 58.306 33.333 0.00 0.00 30.26 3.16
3829 3925 7.651304 CCAGTAACATTTGATGCAACTAAACAA 59.349 33.333 0.00 0.00 30.26 2.83
3830 3926 7.144661 CCAGTAACATTTGATGCAACTAAACA 58.855 34.615 0.00 0.00 30.26 2.83
3831 3927 7.145323 ACCAGTAACATTTGATGCAACTAAAC 58.855 34.615 0.00 0.00 30.26 2.01
3832 3928 7.283625 ACCAGTAACATTTGATGCAACTAAA 57.716 32.000 0.00 0.00 30.26 1.85
3833 3929 6.892658 ACCAGTAACATTTGATGCAACTAA 57.107 33.333 0.00 0.00 30.26 2.24
3834 3930 7.812648 GTTACCAGTAACATTTGATGCAACTA 58.187 34.615 14.34 0.00 43.55 2.24
3835 3931 6.677913 GTTACCAGTAACATTTGATGCAACT 58.322 36.000 14.34 0.00 43.55 3.16
3836 3932 6.927933 GTTACCAGTAACATTTGATGCAAC 57.072 37.500 14.34 0.00 43.55 4.17
3848 3944 9.228636 CAAAGTTGTACAATTGTTACCAGTAAC 57.771 33.333 17.78 12.72 44.16 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.