Multiple sequence alignment - TraesCS6A01G066900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G066900 chr6A 100.000 8866 0 0 1 8866 35629140 35638005 0.000000e+00 16373
1 TraesCS6A01G066900 chrUn 98.139 3493 35 13 2213 5692 100845788 100842313 0.000000e+00 6063
2 TraesCS6A01G066900 chrUn 94.315 2322 100 17 5879 8198 100842087 100839796 0.000000e+00 3528
3 TraesCS6A01G066900 chrUn 96.217 1401 40 9 864 2257 100847169 100845775 0.000000e+00 2281
4 TraesCS6A01G066900 chrUn 92.857 644 41 5 8226 8866 100839800 100839159 0.000000e+00 929
5 TraesCS6A01G066900 chrUn 79.702 537 65 17 1 522 100849507 100849000 1.830000e-91 348
6 TraesCS6A01G066900 chrUn 91.026 156 6 2 5640 5789 100842239 100842086 4.200000e-48 204
7 TraesCS6A01G066900 chrUn 92.857 126 8 1 715 840 455532504 455532628 1.970000e-41 182
8 TraesCS6A01G066900 chrUn 79.121 182 25 8 1863 2043 312095328 312095159 7.280000e-21 113
9 TraesCS6A01G066900 chrUn 97.674 43 1 0 680 722 100847249 100847207 3.430000e-09 75
10 TraesCS6A01G066900 chr6B 90.363 1681 105 27 4132 5789 65728063 65729709 0.000000e+00 2154
11 TraesCS6A01G066900 chr6B 86.130 1615 157 31 2244 3834 65726441 65728012 0.000000e+00 1679
12 TraesCS6A01G066900 chr6B 85.982 1120 125 25 6765 7864 65730684 65731791 0.000000e+00 1170
13 TraesCS6A01G066900 chr6B 89.521 668 42 10 5879 6530 65729708 65730363 0.000000e+00 821
14 TraesCS6A01G066900 chr6B 90.877 559 44 7 8313 8866 65732130 65732686 0.000000e+00 743
15 TraesCS6A01G066900 chr6B 89.803 559 30 12 845 1390 65724969 65725513 0.000000e+00 691
16 TraesCS6A01G066900 chr6B 87.662 308 32 6 8011 8313 65731946 65732252 3.940000e-93 353
17 TraesCS6A01G066900 chr6B 94.958 119 6 0 1715 1833 65726155 65726273 4.230000e-43 187
18 TraesCS6A01G066900 chr3B 94.355 124 7 0 715 838 798492210 798492087 3.270000e-44 191
19 TraesCS6A01G066900 chr3B 86.239 109 9 4 5785 5891 652102840 652102944 7.280000e-21 113
20 TraesCS6A01G066900 chr1B 92.029 138 8 2 705 839 613246063 613245926 3.270000e-44 191
21 TraesCS6A01G066900 chr1B 86.239 109 8 5 5785 5891 443224419 443224522 2.620000e-20 111
22 TraesCS6A01G066900 chr1B 84.906 106 6 6 1929 2033 626096380 626096284 2.040000e-16 99
23 TraesCS6A01G066900 chr7B 94.309 123 5 2 717 838 119046926 119047047 4.230000e-43 187
24 TraesCS6A01G066900 chr7B 88.000 100 7 3 5785 5883 674882228 674882133 7.280000e-21 113
25 TraesCS6A01G066900 chr7D 94.215 121 7 0 720 840 592616931 592617051 1.520000e-42 185
26 TraesCS6A01G066900 chr4D 94.215 121 7 0 720 840 72256246 72256126 1.520000e-42 185
27 TraesCS6A01G066900 chr4D 93.443 122 8 0 715 836 327425674 327425795 1.970000e-41 182
28 TraesCS6A01G066900 chr4B 93.600 125 7 1 716 840 165306506 165306629 1.520000e-42 185
29 TraesCS6A01G066900 chr4B 85.981 107 11 3 5781 5887 13422765 13422867 2.620000e-20 111
30 TraesCS6A01G066900 chr4B 86.111 108 9 4 5785 5890 100284933 100284830 2.620000e-20 111
31 TraesCS6A01G066900 chr4B 86.111 108 10 3 5785 5891 529594291 529594394 2.620000e-20 111
32 TraesCS6A01G066900 chr5B 90.441 136 13 0 702 837 402870162 402870297 7.070000e-41 180
33 TraesCS6A01G066900 chr3A 82.212 208 21 10 1841 2044 336882039 336882234 1.980000e-36 165
34 TraesCS6A01G066900 chr3A 79.121 182 25 8 1863 2043 702381096 702381265 7.280000e-21 113
35 TraesCS6A01G066900 chr3A 79.121 182 25 8 1863 2043 702383763 702383932 7.280000e-21 113
36 TraesCS6A01G066900 chr3A 79.121 182 25 8 1863 2043 702401391 702401560 7.280000e-21 113
37 TraesCS6A01G066900 chr2A 81.340 209 24 7 1839 2044 685592867 685592671 1.190000e-33 156
38 TraesCS6A01G066900 chr2A 91.398 93 4 2 5788 5880 96243130 96243042 3.360000e-24 124
39 TraesCS6A01G066900 chr2B 81.522 184 22 5 1863 2044 787155983 787156156 3.340000e-29 141
40 TraesCS6A01G066900 chr6D 92.135 89 3 3 5786 5873 370847701 370847786 1.210000e-23 122
41 TraesCS6A01G066900 chr7A 87.500 104 10 1 5784 5887 211639883 211639983 5.620000e-22 117
42 TraesCS6A01G066900 chr5A 83.206 131 18 4 1846 1975 698182644 698182771 5.620000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G066900 chr6A 35629140 35638005 8865 False 16373.000000 16373 100.000000 1 8866 1 chr6A.!!$F1 8865
1 TraesCS6A01G066900 chrUn 100839159 100849507 10348 True 1918.285714 6063 92.847143 1 8866 7 chrUn.!!$R2 8865
2 TraesCS6A01G066900 chr6B 65724969 65732686 7717 False 974.750000 2154 89.412000 845 8866 8 chr6B.!!$F1 8021

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
559 594 0.030638 CAAGTTTTGTGTGGCTCCGG 59.969 55.000 0.00 0.00 0.00 5.14 F
832 2518 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
834 2520 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 F
919 2619 0.039764 TCCAGTCCACACGATCCTCT 59.960 55.000 0.00 0.00 0.00 3.69 F
1924 3972 0.319986 TCGTGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72 F
2695 4784 0.034059 CAACGAAGTGCTGGAGGAGT 59.966 55.000 0.00 0.00 45.00 3.85 F
2699 4788 0.248843 GAAGTGCTGGAGGAGTGGAG 59.751 60.000 0.00 0.00 0.00 3.86 F
3562 5656 0.983467 TGGACAGCTTGCATAGGTCA 59.017 50.000 9.54 0.00 30.51 4.02 F
4786 6898 1.557371 AGCCTCCACCTCTAGCTTTTC 59.443 52.381 0.00 0.00 0.00 2.29 F
5802 8053 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37 F
5803 8054 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00 F
7477 9897 0.176680 AGCTATGAGTTCACTGCCCG 59.823 55.000 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 3963 0.179166 CAGCCAACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82 R
2676 4765 0.034059 ACTCCTCCAGCACTTCGTTG 59.966 55.000 0.00 0.00 0.00 4.10 R
2694 4783 6.698380 TCTAATGACAAAAGTAGTCCTCCAC 58.302 40.000 0.00 0.00 35.15 4.02 R
2695 4784 6.928348 TCTAATGACAAAAGTAGTCCTCCA 57.072 37.500 0.00 0.00 35.15 3.86 R
2930 5021 3.181448 ACCGGTAGAACCAAACATGACTT 60.181 43.478 4.49 0.00 38.47 3.01 R
4485 6584 1.321474 CGGCACCAGCAATTCCATAT 58.679 50.000 0.00 0.00 44.61 1.78 R
4752 6864 0.577269 GAGGCTATTTGTGTAGCGCG 59.423 55.000 0.00 0.00 46.29 6.86 R
5112 7224 3.015327 AGAAGTCGCGGAGTATGTAAGT 58.985 45.455 6.13 0.00 0.00 2.24 R
6153 8420 3.449746 AAATGCAGCCCCACTACTTTA 57.550 42.857 0.00 0.00 0.00 1.85 R
7467 9887 0.179015 TTTACTTGCCGGGCAGTGAA 60.179 50.000 22.59 19.75 40.61 3.18 R
7820 10242 3.243839 GCTCAGGCTGGTTGAAATTTTCA 60.244 43.478 15.73 7.74 35.02 2.69 R
8717 11185 0.111253 CTGCCAGGAAGGTGAAGGTT 59.889 55.000 0.00 0.00 40.61 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.895759 TCCAATTTCAATATTTAGGGCTATGC 58.104 34.615 0.00 0.00 0.00 3.14
47 48 3.931907 TTAGGGCTATGCACTTCATGT 57.068 42.857 0.00 0.00 40.61 3.21
67 68 5.748670 TGTTGTAAGATGTTACTGGGCTA 57.251 39.130 13.36 0.00 39.55 3.93
72 73 6.119536 TGTAAGATGTTACTGGGCTAAATGG 58.880 40.000 13.36 0.00 39.55 3.16
81 82 7.891183 TGTTACTGGGCTAAATGGAAATTTAGA 59.109 33.333 18.03 1.83 43.34 2.10
91 92 6.534475 AATGGAAATTTAGAGCTTCATGCA 57.466 33.333 0.00 0.00 45.94 3.96
136 137 3.773418 ATCAGCAGGATGAGGATGAAG 57.227 47.619 0.00 0.00 39.69 3.02
137 138 1.140452 TCAGCAGGATGAGGATGAAGC 59.860 52.381 0.00 0.00 39.69 3.86
138 139 0.106335 AGCAGGATGAGGATGAAGCG 59.894 55.000 0.00 0.00 39.69 4.68
139 140 0.179062 GCAGGATGAGGATGAAGCGT 60.179 55.000 0.00 0.00 39.69 5.07
147 148 0.109086 AGGATGAAGCGTCACACTCG 60.109 55.000 3.91 0.00 36.31 4.18
163 164 2.588596 CGCTGCGCACCATGGATA 60.589 61.111 21.47 0.00 0.00 2.59
172 173 3.127895 GCGCACCATGGATAAAAACTGTA 59.872 43.478 21.47 0.00 0.00 2.74
177 178 7.518370 CGCACCATGGATAAAAACTGTATCTAC 60.518 40.741 21.47 0.00 0.00 2.59
182 183 9.823647 CATGGATAAAAACTGTATCTACTGTCT 57.176 33.333 1.09 0.00 37.38 3.41
227 228 3.167921 ACTAGTGTTGCACGTGTACAA 57.832 42.857 21.60 14.07 39.64 2.41
232 233 3.563808 AGTGTTGCACGTGTACAATGAAT 59.436 39.130 21.60 6.25 39.64 2.57
234 235 3.561725 TGTTGCACGTGTACAATGAATCA 59.438 39.130 18.38 4.95 0.00 2.57
235 236 4.035675 TGTTGCACGTGTACAATGAATCAA 59.964 37.500 18.38 5.65 0.00 2.57
236 237 5.153513 GTTGCACGTGTACAATGAATCAAT 58.846 37.500 18.38 0.00 0.00 2.57
237 238 5.369685 TGCACGTGTACAATGAATCAATT 57.630 34.783 18.38 0.00 0.00 2.32
238 239 5.767269 TGCACGTGTACAATGAATCAATTT 58.233 33.333 18.38 0.00 0.00 1.82
239 240 6.212235 TGCACGTGTACAATGAATCAATTTT 58.788 32.000 18.38 0.00 0.00 1.82
240 241 6.699204 TGCACGTGTACAATGAATCAATTTTT 59.301 30.769 18.38 0.00 0.00 1.94
264 265 8.863872 TTTTTCCAAGAACCATTTTTACCAAA 57.136 26.923 0.00 0.00 0.00 3.28
265 266 8.863872 TTTTCCAAGAACCATTTTTACCAAAA 57.136 26.923 0.00 0.00 36.30 2.44
305 336 9.828039 CTCTATATTTTTACTCCGTAAAAGGGT 57.172 33.333 10.62 5.91 44.90 4.34
312 343 8.922931 TTTTACTCCGTAAAAGGGTATTTTCT 57.077 30.769 7.60 0.00 41.23 2.52
313 344 8.552083 TTTACTCCGTAAAAGGGTATTTTCTC 57.448 34.615 0.00 0.00 35.45 2.87
314 345 6.370186 ACTCCGTAAAAGGGTATTTTCTCT 57.630 37.500 0.00 0.00 0.00 3.10
315 346 6.171213 ACTCCGTAAAAGGGTATTTTCTCTG 58.829 40.000 0.00 0.00 0.00 3.35
316 347 6.117975 TCCGTAAAAGGGTATTTTCTCTGT 57.882 37.500 0.00 0.00 0.00 3.41
317 348 6.168389 TCCGTAAAAGGGTATTTTCTCTGTC 58.832 40.000 0.00 0.00 0.00 3.51
318 349 6.013984 TCCGTAAAAGGGTATTTTCTCTGTCT 60.014 38.462 0.00 0.00 0.00 3.41
319 350 6.653740 CCGTAAAAGGGTATTTTCTCTGTCTT 59.346 38.462 0.00 0.00 0.00 3.01
320 351 7.174426 CCGTAAAAGGGTATTTTCTCTGTCTTT 59.826 37.037 0.00 0.00 0.00 2.52
321 352 9.211485 CGTAAAAGGGTATTTTCTCTGTCTTTA 57.789 33.333 0.00 0.00 0.00 1.85
324 355 9.642343 AAAAGGGTATTTTCTCTGTCTTTACTT 57.358 29.630 0.00 0.00 0.00 2.24
325 356 8.850007 AAGGGTATTTTCTCTGTCTTTACTTC 57.150 34.615 0.00 0.00 0.00 3.01
326 357 7.097834 AGGGTATTTTCTCTGTCTTTACTTCG 58.902 38.462 0.00 0.00 0.00 3.79
327 358 6.872547 GGGTATTTTCTCTGTCTTTACTTCGT 59.127 38.462 0.00 0.00 0.00 3.85
328 359 8.031277 GGGTATTTTCTCTGTCTTTACTTCGTA 58.969 37.037 0.00 0.00 0.00 3.43
329 360 9.583765 GGTATTTTCTCTGTCTTTACTTCGTAT 57.416 33.333 0.00 0.00 0.00 3.06
383 414 9.621629 TCAAAGTTTGACCAAGTTTATTAGAGA 57.378 29.630 14.35 0.00 36.07 3.10
433 464 9.498176 TGTCAAATCAATATCACTAGATCCATG 57.502 33.333 0.00 0.00 35.67 3.66
469 504 6.030548 TCTTTTTCACATTGTGTTCACCAA 57.969 33.333 16.06 0.00 34.79 3.67
471 506 4.790765 TTTCACATTGTGTTCACCAACA 57.209 36.364 16.06 0.00 40.40 3.33
475 510 1.851666 CATTGTGTTCACCAACAACGC 59.148 47.619 0.37 0.00 44.32 4.84
487 522 1.097547 AACAACGCTTGCTGCTCTGT 61.098 50.000 0.00 1.83 40.11 3.41
497 532 1.947013 CTGCTCTGTTGTGCTGGTG 59.053 57.895 0.00 0.00 34.18 4.17
502 537 1.736126 CTCTGTTGTGCTGGTGCTATG 59.264 52.381 0.00 0.00 40.48 2.23
504 539 1.198408 CTGTTGTGCTGGTGCTATGTG 59.802 52.381 0.00 0.00 40.48 3.21
508 543 2.045045 GCTGGTGCTATGTGGCCA 60.045 61.111 0.00 0.00 36.03 5.36
509 544 1.454479 GCTGGTGCTATGTGGCCAT 60.454 57.895 9.72 0.00 36.03 4.40
522 557 1.740025 GTGGCCATAGCACAAAGACTC 59.260 52.381 9.72 0.00 42.56 3.36
523 558 1.630369 TGGCCATAGCACAAAGACTCT 59.370 47.619 0.00 0.00 42.56 3.24
524 559 2.012673 GGCCATAGCACAAAGACTCTG 58.987 52.381 0.00 0.00 42.56 3.35
525 560 2.355108 GGCCATAGCACAAAGACTCTGA 60.355 50.000 0.00 0.00 42.56 3.27
526 561 2.935201 GCCATAGCACAAAGACTCTGAG 59.065 50.000 2.45 2.45 39.53 3.35
527 562 2.935201 CCATAGCACAAAGACTCTGAGC 59.065 50.000 4.19 0.00 0.00 4.26
528 563 3.369261 CCATAGCACAAAGACTCTGAGCT 60.369 47.826 5.99 5.99 42.35 4.09
529 564 2.166821 AGCACAAAGACTCTGAGCTG 57.833 50.000 4.19 0.18 38.96 4.24
530 565 1.415659 AGCACAAAGACTCTGAGCTGT 59.584 47.619 4.19 0.81 38.96 4.40
531 566 1.797635 GCACAAAGACTCTGAGCTGTC 59.202 52.381 4.19 0.00 0.00 3.51
532 567 2.547642 GCACAAAGACTCTGAGCTGTCT 60.548 50.000 4.19 0.00 44.40 3.41
533 568 3.305676 GCACAAAGACTCTGAGCTGTCTA 60.306 47.826 4.19 0.00 42.02 2.59
534 569 4.620332 GCACAAAGACTCTGAGCTGTCTAT 60.620 45.833 4.19 0.00 42.02 1.98
535 570 5.101628 CACAAAGACTCTGAGCTGTCTATC 58.898 45.833 4.19 0.00 42.02 2.08
536 571 4.769488 ACAAAGACTCTGAGCTGTCTATCA 59.231 41.667 4.19 0.00 42.02 2.15
537 572 4.981806 AAGACTCTGAGCTGTCTATCAC 57.018 45.455 4.19 0.00 42.02 3.06
538 573 3.961849 AGACTCTGAGCTGTCTATCACA 58.038 45.455 4.19 0.00 41.19 3.58
539 574 4.535781 AGACTCTGAGCTGTCTATCACAT 58.464 43.478 4.19 0.00 41.19 3.21
540 575 4.580167 AGACTCTGAGCTGTCTATCACATC 59.420 45.833 4.19 0.00 41.19 3.06
541 576 4.276642 ACTCTGAGCTGTCTATCACATCA 58.723 43.478 4.19 0.00 33.23 3.07
542 577 4.708909 ACTCTGAGCTGTCTATCACATCAA 59.291 41.667 4.19 0.00 33.23 2.57
543 578 5.163530 ACTCTGAGCTGTCTATCACATCAAG 60.164 44.000 4.19 0.00 33.23 3.02
544 579 4.708909 TCTGAGCTGTCTATCACATCAAGT 59.291 41.667 0.00 0.00 33.23 3.16
545 580 5.186603 TCTGAGCTGTCTATCACATCAAGTT 59.813 40.000 0.00 0.00 33.23 2.66
546 581 5.798132 TGAGCTGTCTATCACATCAAGTTT 58.202 37.500 0.00 0.00 33.23 2.66
547 582 6.233434 TGAGCTGTCTATCACATCAAGTTTT 58.767 36.000 0.00 0.00 33.23 2.43
548 583 6.148315 TGAGCTGTCTATCACATCAAGTTTTG 59.852 38.462 0.00 0.00 33.23 2.44
549 584 6.000219 AGCTGTCTATCACATCAAGTTTTGT 59.000 36.000 0.00 0.00 33.23 2.83
550 585 6.072838 AGCTGTCTATCACATCAAGTTTTGTG 60.073 38.462 8.72 8.72 43.61 3.33
551 586 6.293626 GCTGTCTATCACATCAAGTTTTGTGT 60.294 38.462 12.96 6.09 42.95 3.72
552 587 6.958255 TGTCTATCACATCAAGTTTTGTGTG 58.042 36.000 12.96 9.53 42.95 3.82
553 588 6.017192 TGTCTATCACATCAAGTTTTGTGTGG 60.017 38.462 12.96 5.87 42.95 4.17
554 589 3.435105 TCACATCAAGTTTTGTGTGGC 57.565 42.857 12.96 0.00 42.95 5.01
555 590 3.023119 TCACATCAAGTTTTGTGTGGCT 58.977 40.909 12.96 0.00 42.95 4.75
556 591 3.066621 TCACATCAAGTTTTGTGTGGCTC 59.933 43.478 12.96 0.00 42.95 4.70
557 592 2.362077 ACATCAAGTTTTGTGTGGCTCC 59.638 45.455 0.00 0.00 0.00 4.70
558 593 1.021202 TCAAGTTTTGTGTGGCTCCG 58.979 50.000 0.00 0.00 0.00 4.63
559 594 0.030638 CAAGTTTTGTGTGGCTCCGG 59.969 55.000 0.00 0.00 0.00 5.14
560 595 1.734388 AAGTTTTGTGTGGCTCCGGC 61.734 55.000 0.00 0.00 37.82 6.13
561 596 2.124109 TTTTGTGTGGCTCCGGCA 60.124 55.556 0.00 0.00 40.87 5.69
562 597 1.754621 TTTTGTGTGGCTCCGGCAA 60.755 52.632 0.00 0.00 40.46 4.52
563 598 1.733402 TTTTGTGTGGCTCCGGCAAG 61.733 55.000 0.00 0.00 40.46 4.01
564 599 4.641645 TGTGTGGCTCCGGCAAGG 62.642 66.667 0.00 0.00 40.46 3.61
573 608 4.033776 CCGGCAAGGGAGAGGCAA 62.034 66.667 0.00 0.00 35.97 4.52
574 609 2.273449 CGGCAAGGGAGAGGCAAT 59.727 61.111 0.00 0.00 0.00 3.56
575 610 2.117156 CGGCAAGGGAGAGGCAATG 61.117 63.158 0.00 0.00 0.00 2.82
576 611 1.304282 GGCAAGGGAGAGGCAATGA 59.696 57.895 0.00 0.00 0.00 2.57
577 612 1.034292 GGCAAGGGAGAGGCAATGAC 61.034 60.000 0.00 0.00 0.00 3.06
578 613 1.372087 GCAAGGGAGAGGCAATGACG 61.372 60.000 0.00 0.00 0.00 4.35
579 614 0.745845 CAAGGGAGAGGCAATGACGG 60.746 60.000 0.00 0.00 0.00 4.79
580 615 1.915078 AAGGGAGAGGCAATGACGGG 61.915 60.000 0.00 0.00 0.00 5.28
581 616 2.514824 GGAGAGGCAATGACGGGC 60.515 66.667 0.00 0.00 0.00 6.13
582 617 2.268920 GAGAGGCAATGACGGGCA 59.731 61.111 0.00 0.00 0.00 5.36
596 631 2.617274 GGGCAGCACGTCTTCAACC 61.617 63.158 0.00 0.00 0.00 3.77
597 632 2.617274 GGCAGCACGTCTTCAACCC 61.617 63.158 0.00 0.00 0.00 4.11
601 636 2.251642 GCACGTCTTCAACCCGCTT 61.252 57.895 0.00 0.00 0.00 4.68
602 637 1.860078 CACGTCTTCAACCCGCTTC 59.140 57.895 0.00 0.00 0.00 3.86
603 638 0.878523 CACGTCTTCAACCCGCTTCA 60.879 55.000 0.00 0.00 0.00 3.02
604 639 0.600255 ACGTCTTCAACCCGCTTCAG 60.600 55.000 0.00 0.00 0.00 3.02
605 640 0.600255 CGTCTTCAACCCGCTTCAGT 60.600 55.000 0.00 0.00 0.00 3.41
606 641 0.868406 GTCTTCAACCCGCTTCAGTG 59.132 55.000 0.00 0.00 0.00 3.66
607 642 0.884704 TCTTCAACCCGCTTCAGTGC 60.885 55.000 0.00 0.00 0.00 4.40
609 644 0.884704 TTCAACCCGCTTCAGTGCTC 60.885 55.000 0.00 0.00 0.00 4.26
610 645 1.597854 CAACCCGCTTCAGTGCTCA 60.598 57.895 0.00 0.00 0.00 4.26
611 646 0.957395 CAACCCGCTTCAGTGCTCAT 60.957 55.000 0.00 0.00 0.00 2.90
612 647 0.613260 AACCCGCTTCAGTGCTCATA 59.387 50.000 0.00 0.00 0.00 2.15
613 648 0.613260 ACCCGCTTCAGTGCTCATAA 59.387 50.000 0.00 0.00 0.00 1.90
615 650 1.869767 CCCGCTTCAGTGCTCATAATC 59.130 52.381 0.00 0.00 0.00 1.75
616 651 1.524355 CCGCTTCAGTGCTCATAATCG 59.476 52.381 0.00 0.00 0.00 3.34
617 652 2.463876 CGCTTCAGTGCTCATAATCGA 58.536 47.619 0.00 0.00 0.00 3.59
618 653 3.055591 CGCTTCAGTGCTCATAATCGAT 58.944 45.455 0.00 0.00 0.00 3.59
619 654 4.229876 CGCTTCAGTGCTCATAATCGATA 58.770 43.478 0.00 0.00 0.00 2.92
621 656 5.226396 GCTTCAGTGCTCATAATCGATACT 58.774 41.667 0.00 0.00 0.00 2.12
624 659 7.574030 GCTTCAGTGCTCATAATCGATACTAGA 60.574 40.741 0.00 0.00 0.00 2.43
628 663 6.887002 AGTGCTCATAATCGATACTAGATGGA 59.113 38.462 0.00 0.00 0.00 3.41
629 664 6.970043 GTGCTCATAATCGATACTAGATGGAC 59.030 42.308 0.00 0.00 0.00 4.02
639 674 8.499403 TCGATACTAGATGGACTATGAATCTG 57.501 38.462 0.00 0.00 32.92 2.90
644 679 7.385267 ACTAGATGGACTATGAATCTGAATGC 58.615 38.462 0.00 0.00 32.92 3.56
722 2408 5.182570 TCGAGTGTTGCACTTGTATACTACT 59.817 40.000 14.11 0.00 45.44 2.57
723 2409 5.512082 CGAGTGTTGCACTTGTATACTACTC 59.488 44.000 4.17 0.00 45.44 2.59
724 2410 5.721232 AGTGTTGCACTTGTATACTACTCC 58.279 41.667 4.17 0.00 42.59 3.85
725 2411 4.868734 GTGTTGCACTTGTATACTACTCCC 59.131 45.833 4.17 0.00 0.00 4.30
726 2412 4.775780 TGTTGCACTTGTATACTACTCCCT 59.224 41.667 4.17 0.00 0.00 4.20
727 2413 5.105473 TGTTGCACTTGTATACTACTCCCTC 60.105 44.000 4.17 0.00 0.00 4.30
728 2414 3.958798 TGCACTTGTATACTACTCCCTCC 59.041 47.826 4.17 0.00 0.00 4.30
729 2415 3.004524 GCACTTGTATACTACTCCCTCCG 59.995 52.174 4.17 0.00 0.00 4.63
730 2416 4.205587 CACTTGTATACTACTCCCTCCGT 58.794 47.826 4.17 0.00 0.00 4.69
731 2417 4.275443 CACTTGTATACTACTCCCTCCGTC 59.725 50.000 4.17 0.00 0.00 4.79
732 2418 4.165758 ACTTGTATACTACTCCCTCCGTCT 59.834 45.833 4.17 0.00 0.00 4.18
733 2419 5.367937 ACTTGTATACTACTCCCTCCGTCTA 59.632 44.000 4.17 0.00 0.00 2.59
734 2420 5.480642 TGTATACTACTCCCTCCGTCTAG 57.519 47.826 4.17 0.00 0.00 2.43
735 2421 5.150715 TGTATACTACTCCCTCCGTCTAGA 58.849 45.833 4.17 0.00 0.00 2.43
736 2422 5.604231 TGTATACTACTCCCTCCGTCTAGAA 59.396 44.000 4.17 0.00 0.00 2.10
737 2423 5.643421 ATACTACTCCCTCCGTCTAGAAA 57.357 43.478 0.00 0.00 0.00 2.52
738 2424 4.523168 ACTACTCCCTCCGTCTAGAAAT 57.477 45.455 0.00 0.00 0.00 2.17
739 2425 5.643421 ACTACTCCCTCCGTCTAGAAATA 57.357 43.478 0.00 0.00 0.00 1.40
740 2426 5.375773 ACTACTCCCTCCGTCTAGAAATAC 58.624 45.833 0.00 0.00 0.00 1.89
741 2427 4.523168 ACTCCCTCCGTCTAGAAATACT 57.477 45.455 0.00 0.00 0.00 2.12
742 2428 4.869451 ACTCCCTCCGTCTAGAAATACTT 58.131 43.478 0.00 0.00 0.00 2.24
743 2429 4.645588 ACTCCCTCCGTCTAGAAATACTTG 59.354 45.833 0.00 0.00 0.00 3.16
744 2430 4.607239 TCCCTCCGTCTAGAAATACTTGT 58.393 43.478 0.00 0.00 0.00 3.16
745 2431 4.643784 TCCCTCCGTCTAGAAATACTTGTC 59.356 45.833 0.00 0.00 0.00 3.18
746 2432 4.497674 CCCTCCGTCTAGAAATACTTGTCG 60.498 50.000 0.00 0.00 34.45 4.35
747 2433 4.497674 CCTCCGTCTAGAAATACTTGTCGG 60.498 50.000 0.00 0.00 46.52 4.79
750 2436 5.481200 CGTCTAGAAATACTTGTCGGAGA 57.519 43.478 0.00 0.00 32.33 3.71
751 2437 5.877031 CGTCTAGAAATACTTGTCGGAGAA 58.123 41.667 0.00 0.00 39.69 2.87
752 2438 6.320171 CGTCTAGAAATACTTGTCGGAGAAA 58.680 40.000 0.00 0.00 39.69 2.52
753 2439 6.973474 CGTCTAGAAATACTTGTCGGAGAAAT 59.027 38.462 0.00 0.00 39.69 2.17
754 2440 7.043986 CGTCTAGAAATACTTGTCGGAGAAATG 60.044 40.741 0.00 0.00 39.69 2.32
755 2441 5.803020 AGAAATACTTGTCGGAGAAATGC 57.197 39.130 0.00 0.00 39.69 3.56
756 2442 4.330074 AGAAATACTTGTCGGAGAAATGCG 59.670 41.667 0.00 0.00 39.69 4.73
757 2443 2.736144 TACTTGTCGGAGAAATGCGT 57.264 45.000 0.00 0.00 39.69 5.24
758 2444 2.736144 ACTTGTCGGAGAAATGCGTA 57.264 45.000 0.00 0.00 39.69 4.42
759 2445 3.034721 ACTTGTCGGAGAAATGCGTAA 57.965 42.857 0.00 0.00 39.69 3.18
760 2446 3.395639 ACTTGTCGGAGAAATGCGTAAA 58.604 40.909 0.00 0.00 39.69 2.01
761 2447 3.810941 ACTTGTCGGAGAAATGCGTAAAA 59.189 39.130 0.00 0.00 39.69 1.52
762 2448 4.273969 ACTTGTCGGAGAAATGCGTAAAAA 59.726 37.500 0.00 0.00 39.69 1.94
763 2449 5.048991 ACTTGTCGGAGAAATGCGTAAAAAT 60.049 36.000 0.00 0.00 39.69 1.82
764 2450 4.717991 TGTCGGAGAAATGCGTAAAAATG 58.282 39.130 0.00 0.00 39.69 2.32
765 2451 4.095610 GTCGGAGAAATGCGTAAAAATGG 58.904 43.478 0.00 0.00 39.69 3.16
766 2452 4.004314 TCGGAGAAATGCGTAAAAATGGA 58.996 39.130 0.00 0.00 0.00 3.41
767 2453 4.638421 TCGGAGAAATGCGTAAAAATGGAT 59.362 37.500 0.00 0.00 0.00 3.41
768 2454 4.734854 CGGAGAAATGCGTAAAAATGGATG 59.265 41.667 0.00 0.00 0.00 3.51
769 2455 5.650543 GGAGAAATGCGTAAAAATGGATGT 58.349 37.500 0.00 0.00 0.00 3.06
770 2456 6.457663 CGGAGAAATGCGTAAAAATGGATGTA 60.458 38.462 0.00 0.00 0.00 2.29
771 2457 7.425606 GGAGAAATGCGTAAAAATGGATGTAT 58.574 34.615 0.00 0.00 0.00 2.29
772 2458 7.920682 GGAGAAATGCGTAAAAATGGATGTATT 59.079 33.333 0.00 0.00 0.00 1.89
773 2459 9.301153 GAGAAATGCGTAAAAATGGATGTATTT 57.699 29.630 0.00 0.00 31.93 1.40
778 2464 9.730420 ATGCGTAAAAATGGATGTATTTAGAAC 57.270 29.630 0.00 0.00 30.47 3.01
779 2465 8.952278 TGCGTAAAAATGGATGTATTTAGAACT 58.048 29.630 0.00 0.00 30.47 3.01
806 2492 8.423906 AAATACGTCTAGATACATCCATTCCT 57.576 34.615 0.00 0.00 0.00 3.36
807 2493 5.968528 ACGTCTAGATACATCCATTCCTC 57.031 43.478 0.00 0.00 0.00 3.71
808 2494 5.636123 ACGTCTAGATACATCCATTCCTCT 58.364 41.667 0.00 0.00 0.00 3.69
809 2495 6.780901 ACGTCTAGATACATCCATTCCTCTA 58.219 40.000 0.00 0.00 0.00 2.43
810 2496 7.232188 ACGTCTAGATACATCCATTCCTCTAA 58.768 38.462 0.00 0.00 0.00 2.10
811 2497 7.175293 ACGTCTAGATACATCCATTCCTCTAAC 59.825 40.741 0.00 0.00 0.00 2.34
812 2498 7.175119 CGTCTAGATACATCCATTCCTCTAACA 59.825 40.741 0.00 0.00 0.00 2.41
813 2499 8.861086 GTCTAGATACATCCATTCCTCTAACAA 58.139 37.037 0.00 0.00 0.00 2.83
814 2500 9.083422 TCTAGATACATCCATTCCTCTAACAAG 57.917 37.037 0.00 0.00 0.00 3.16
815 2501 7.682787 AGATACATCCATTCCTCTAACAAGT 57.317 36.000 0.00 0.00 0.00 3.16
816 2502 8.783660 AGATACATCCATTCCTCTAACAAGTA 57.216 34.615 0.00 0.00 0.00 2.24
817 2503 9.386122 AGATACATCCATTCCTCTAACAAGTAT 57.614 33.333 0.00 0.00 0.00 2.12
820 2506 8.738645 ACATCCATTCCTCTAACAAGTATTTC 57.261 34.615 0.00 0.00 0.00 2.17
821 2507 7.775561 ACATCCATTCCTCTAACAAGTATTTCC 59.224 37.037 0.00 0.00 0.00 3.13
822 2508 6.346096 TCCATTCCTCTAACAAGTATTTCCG 58.654 40.000 0.00 0.00 0.00 4.30
823 2509 5.527582 CCATTCCTCTAACAAGTATTTCCGG 59.472 44.000 0.00 0.00 0.00 5.14
824 2510 6.346096 CATTCCTCTAACAAGTATTTCCGGA 58.654 40.000 0.00 0.00 0.00 5.14
825 2511 5.334724 TCCTCTAACAAGTATTTCCGGAC 57.665 43.478 1.83 0.00 0.00 4.79
826 2512 4.110482 CCTCTAACAAGTATTTCCGGACG 58.890 47.826 1.83 0.00 0.00 4.79
827 2513 4.110482 CTCTAACAAGTATTTCCGGACGG 58.890 47.826 1.83 3.96 0.00 4.79
828 2514 3.763360 TCTAACAAGTATTTCCGGACGGA 59.237 43.478 1.83 9.76 43.52 4.69
829 2515 2.667473 ACAAGTATTTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
830 2516 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
831 2517 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
832 2518 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
833 2519 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
834 2520 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
835 2521 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
836 2522 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
837 2523 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
838 2524 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
839 2525 0.817229 CCGGACGGAGGGAGTACTAC 60.817 65.000 4.40 0.00 37.50 2.73
853 2539 1.324736 GTACTACGAGACGTACGGTGG 59.675 57.143 21.06 11.78 41.54 4.61
917 2617 1.258445 GGTCCAGTCCACACGATCCT 61.258 60.000 0.00 0.00 0.00 3.24
918 2618 0.173708 GTCCAGTCCACACGATCCTC 59.826 60.000 0.00 0.00 0.00 3.71
919 2619 0.039764 TCCAGTCCACACGATCCTCT 59.960 55.000 0.00 0.00 0.00 3.69
944 2646 2.303890 TCCGTCCACTACAGAGTACAGA 59.696 50.000 0.00 0.00 33.32 3.41
1362 3068 1.221566 CATGGTCATCGGCCAGACA 59.778 57.895 18.32 7.94 39.65 3.41
1380 3086 3.387609 ATCCTCCCTCCAGCTCGCT 62.388 63.158 0.00 0.00 0.00 4.93
1391 3097 1.381327 AGCTCGCTGCCCTAGGTAA 60.381 57.895 8.29 0.00 44.23 2.85
1392 3098 0.760945 AGCTCGCTGCCCTAGGTAAT 60.761 55.000 8.29 0.00 44.23 1.89
1418 3173 1.270550 CTCCGCTTTTGGCTCAATGTT 59.729 47.619 0.00 0.00 39.13 2.71
1436 3194 1.670949 TTGTGTGTTGCGGCATTGGT 61.671 50.000 2.28 0.00 0.00 3.67
1494 3252 3.695830 TCTTCTTCCTACCAAACGCAT 57.304 42.857 0.00 0.00 0.00 4.73
1709 3756 4.692625 ACTTCAGTGTAACATGTGCTCATC 59.307 41.667 0.00 0.00 41.43 2.92
1915 3963 0.859788 GGCGTGTTTTCGTGTGTGTG 60.860 55.000 0.00 0.00 0.00 3.82
1923 3971 0.793250 TTCGTGTGTGTGTGTGTGTG 59.207 50.000 0.00 0.00 0.00 3.82
1924 3972 0.319986 TCGTGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
1946 3994 1.811965 TGTTGGCTGTGTGCATCATAC 59.188 47.619 0.00 0.00 45.15 2.39
1973 4021 2.034687 GGCTGGGTGTGTGCTCAT 59.965 61.111 0.00 0.00 0.00 2.90
2676 4765 9.921637 TGAAGTGTTGGATATTTTGTATTTTCC 57.078 29.630 0.00 0.00 0.00 3.13
2694 4783 0.671781 CCAACGAAGTGCTGGAGGAG 60.672 60.000 0.00 0.00 45.00 3.69
2695 4784 0.034059 CAACGAAGTGCTGGAGGAGT 59.966 55.000 0.00 0.00 45.00 3.85
2696 4785 0.034059 AACGAAGTGCTGGAGGAGTG 59.966 55.000 0.00 0.00 45.00 3.51
2697 4786 1.079543 CGAAGTGCTGGAGGAGTGG 60.080 63.158 0.00 0.00 0.00 4.00
2698 4787 1.536073 CGAAGTGCTGGAGGAGTGGA 61.536 60.000 0.00 0.00 0.00 4.02
2699 4788 0.248843 GAAGTGCTGGAGGAGTGGAG 59.751 60.000 0.00 0.00 0.00 3.86
2700 4789 1.197430 AAGTGCTGGAGGAGTGGAGG 61.197 60.000 0.00 0.00 0.00 4.30
2701 4790 1.610673 GTGCTGGAGGAGTGGAGGA 60.611 63.158 0.00 0.00 0.00 3.71
2930 5021 5.049060 AGTTTAGTGTTTTGCATGCACGATA 60.049 36.000 22.58 7.38 38.10 2.92
3379 5473 5.475909 ACAATCATGCTCACTTGAACTCAAT 59.524 36.000 0.00 0.00 34.04 2.57
3562 5656 0.983467 TGGACAGCTTGCATAGGTCA 59.017 50.000 9.54 0.00 30.51 4.02
4220 6317 4.911610 GGTTGCGTTAATTGCTATATGCTG 59.088 41.667 4.57 0.00 43.37 4.41
4485 6584 9.494271 GATATATTTCTTTGCTCTGTATGTGGA 57.506 33.333 0.00 0.00 0.00 4.02
4752 6864 7.984050 TCTCTCCACTCTTCATGATTTGTAATC 59.016 37.037 0.00 0.00 0.00 1.75
4786 6898 1.557371 AGCCTCCACCTCTAGCTTTTC 59.443 52.381 0.00 0.00 0.00 2.29
4864 6976 9.708222 CATGTTTTTGTATAACTAGCTAGCTTG 57.292 33.333 24.88 23.43 0.00 4.01
5256 7368 5.408356 TGCTTACTTTATCTCGTGAAGGTC 58.592 41.667 0.00 0.00 0.00 3.85
5454 7566 7.442364 TGTTGATACTTTAGCAGGAATATCAGC 59.558 37.037 0.00 0.00 32.30 4.26
5687 7925 7.597288 AGTAATTACCAATTTTATGAGGGGC 57.403 36.000 12.05 0.00 32.38 5.80
5793 8044 9.150028 AGGAGTTTATCTAAGATTTCTACTCCC 57.850 37.037 15.16 3.87 46.46 4.30
5794 8045 9.150028 GGAGTTTATCTAAGATTTCTACTCCCT 57.850 37.037 0.00 0.00 41.95 4.20
5796 8047 9.150028 AGTTTATCTAAGATTTCTACTCCCTCC 57.850 37.037 0.00 0.00 0.00 4.30
5797 8048 7.762588 TTATCTAAGATTTCTACTCCCTCCG 57.237 40.000 0.00 0.00 0.00 4.63
5798 8049 5.126699 TCTAAGATTTCTACTCCCTCCGT 57.873 43.478 0.00 0.00 0.00 4.69
5799 8050 5.131784 TCTAAGATTTCTACTCCCTCCGTC 58.868 45.833 0.00 0.00 0.00 4.79
5800 8051 2.668625 AGATTTCTACTCCCTCCGTCC 58.331 52.381 0.00 0.00 0.00 4.79
5801 8052 1.687660 GATTTCTACTCCCTCCGTCCC 59.312 57.143 0.00 0.00 0.00 4.46
5802 8053 0.410663 TTTCTACTCCCTCCGTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
5803 8054 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
5804 8055 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
5805 8056 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
5806 8057 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
5807 8058 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
5808 8059 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5809 8060 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
5810 8061 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
5811 8062 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
5812 8063 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
5813 8064 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
5814 8065 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
5815 8066 5.247564 CCCTCCGTCCCATAATATAAGAACA 59.752 44.000 0.00 0.00 0.00 3.18
5816 8067 6.070194 CCCTCCGTCCCATAATATAAGAACAT 60.070 42.308 0.00 0.00 0.00 2.71
5817 8068 7.394816 CCTCCGTCCCATAATATAAGAACATT 58.605 38.462 0.00 0.00 0.00 2.71
5818 8069 7.883311 CCTCCGTCCCATAATATAAGAACATTT 59.117 37.037 0.00 0.00 0.00 2.32
5819 8070 9.284968 CTCCGTCCCATAATATAAGAACATTTT 57.715 33.333 0.00 0.00 0.00 1.82
5820 8071 9.635404 TCCGTCCCATAATATAAGAACATTTTT 57.365 29.630 0.00 0.00 0.00 1.94
5847 8098 7.430992 CACTAGTGTAGTACTGTAGTGTCAA 57.569 40.000 22.25 0.00 39.52 3.18
5848 8099 7.868775 CACTAGTGTAGTACTGTAGTGTCAAA 58.131 38.462 22.25 0.00 39.52 2.69
5849 8100 8.347771 CACTAGTGTAGTACTGTAGTGTCAAAA 58.652 37.037 22.25 0.00 39.52 2.44
5850 8101 8.906867 ACTAGTGTAGTACTGTAGTGTCAAAAA 58.093 33.333 5.39 0.00 40.65 1.94
5851 8102 7.998753 AGTGTAGTACTGTAGTGTCAAAAAC 57.001 36.000 5.39 0.00 38.49 2.43
5852 8103 7.549839 AGTGTAGTACTGTAGTGTCAAAAACA 58.450 34.615 5.39 0.00 38.49 2.83
5868 8119 9.967451 TGTCAAAAACACTCTTATATTATGGGA 57.033 29.630 0.00 0.00 31.20 4.37
5870 8121 9.104965 TCAAAAACACTCTTATATTATGGGACG 57.895 33.333 0.00 0.00 0.00 4.79
5871 8122 8.342634 CAAAAACACTCTTATATTATGGGACGG 58.657 37.037 0.00 0.00 0.00 4.79
5872 8123 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
5873 8124 7.554959 AACACTCTTATATTATGGGACGGAT 57.445 36.000 0.00 0.00 0.00 4.18
5874 8125 6.936279 ACACTCTTATATTATGGGACGGATG 58.064 40.000 0.00 0.00 0.00 3.51
5875 8126 6.070767 ACACTCTTATATTATGGGACGGATGG 60.071 42.308 0.00 0.00 0.00 3.51
5876 8127 6.154534 CACTCTTATATTATGGGACGGATGGA 59.845 42.308 0.00 0.00 0.00 3.41
5877 8128 6.381420 ACTCTTATATTATGGGACGGATGGAG 59.619 42.308 0.00 0.00 0.00 3.86
5878 8129 6.261435 TCTTATATTATGGGACGGATGGAGT 58.739 40.000 0.00 0.00 0.00 3.85
5879 8130 7.415908 TCTTATATTATGGGACGGATGGAGTA 58.584 38.462 0.00 0.00 0.00 2.59
6029 8296 7.067532 TGCATAACAGGTTTCATACGTTTAG 57.932 36.000 0.00 0.00 0.00 1.85
6109 8376 4.191544 GCACCACTATGCATACTTGAAGA 58.808 43.478 1.16 0.00 45.39 2.87
6153 8420 5.356190 CACTGATGGTGCTTTGATTGACTAT 59.644 40.000 0.00 0.00 39.22 2.12
6280 8547 2.706555 TGCTACTCAAGTCACTCGTG 57.293 50.000 0.00 0.00 0.00 4.35
6390 8657 4.591498 ACTGGTTGTACAACAGGTCTGATA 59.409 41.667 33.42 11.52 42.85 2.15
6427 8694 5.689383 TTGCATGTTCTGGAAGTACTTTC 57.311 39.130 10.02 8.46 35.04 2.62
6488 8755 7.604164 CAGTTGTCTATGTAGATGTTGTTTCCT 59.396 37.037 0.00 0.00 34.39 3.36
6508 8775 8.709646 GTTTCCTAGTATCTACAACTTGTTGTG 58.290 37.037 24.18 15.70 36.44 3.33
6654 9053 8.286097 GCTAGTTTATTGCTAATCCTGATGTTC 58.714 37.037 0.00 0.00 0.00 3.18
6684 9083 3.234353 AGGCTGTCTTCCATCATATCGA 58.766 45.455 0.00 0.00 0.00 3.59
6756 9155 3.181490 CGTGGAAATCTCCTATCGTGACA 60.181 47.826 0.00 0.00 42.94 3.58
6785 9184 5.618640 GCATAACTTGGTTTCTCTGCAGAAG 60.619 44.000 18.85 12.54 39.90 2.85
6851 9253 4.889832 ACTAATAATTCAGCTGCACTGC 57.110 40.909 9.47 0.88 46.76 4.40
7008 9411 1.140452 AGGCCATCATCAGCAGTGTAG 59.860 52.381 5.01 0.00 0.00 2.74
7023 9426 6.423905 CAGCAGTGTAGTAATTAATGCGGTAT 59.576 38.462 0.00 0.00 37.28 2.73
7033 9437 8.103305 AGTAATTAATGCGGTATCCATCTTGAT 58.897 33.333 0.00 0.00 0.00 2.57
7114 9520 7.882791 TCATAAGATCAACAGCTGAAAACCTAA 59.117 33.333 23.35 0.05 37.67 2.69
7131 9537 3.891366 ACCTAACATTGGCTGGATAATGC 59.109 43.478 0.00 0.00 37.71 3.56
7151 9557 4.512484 TGCGATGAAATGTCTGATGGTTA 58.488 39.130 0.00 0.00 0.00 2.85
7246 9652 6.351966 GGAACCTTTCTACTACTGGTAATGCT 60.352 42.308 0.00 0.00 0.00 3.79
7281 9688 4.389374 TCCTTTTTCTGTGTGACCTCATC 58.611 43.478 0.00 0.00 0.00 2.92
7289 9696 0.768622 TGTGACCTCATCGGGGTTTT 59.231 50.000 0.00 0.00 37.17 2.43
7384 9793 6.180472 TCCAGAACTTTTGAATATGAGGTCC 58.820 40.000 0.00 0.00 0.00 4.46
7467 9887 7.786030 TGCTCTTAGTTGATAAAGCTATGAGT 58.214 34.615 0.00 0.00 38.33 3.41
7477 9897 0.176680 AGCTATGAGTTCACTGCCCG 59.823 55.000 0.00 0.00 0.00 6.13
7502 9922 5.107337 GCAAGTAAAAGAGCCAAAATTCAGC 60.107 40.000 0.00 0.00 0.00 4.26
7523 9943 3.127721 GCTGCCACCTTGAATAGTTCTTC 59.872 47.826 0.00 0.00 0.00 2.87
7529 9949 6.239036 GCCACCTTGAATAGTTCTTCTGTTTT 60.239 38.462 0.00 0.00 0.00 2.43
7817 10239 0.802494 CTCCAACGGGCATGTTGTAC 59.198 55.000 17.13 0.00 46.08 2.90
7820 10242 1.543802 CCAACGGGCATGTTGTACAAT 59.456 47.619 12.26 0.00 46.08 2.71
7876 10298 1.606668 GGCCACATGAGTTTGAAACGA 59.393 47.619 0.00 0.00 36.23 3.85
7948 10373 5.619981 GCATTGTCTGTTTCTAACCACCATC 60.620 44.000 0.00 0.00 0.00 3.51
7949 10374 3.659786 TGTCTGTTTCTAACCACCATCG 58.340 45.455 0.00 0.00 0.00 3.84
7950 10375 3.000727 GTCTGTTTCTAACCACCATCGG 58.999 50.000 0.00 0.00 0.00 4.18
7959 10384 2.871096 ACCACCATCGGTTGTAATGT 57.129 45.000 0.00 0.00 34.91 2.71
7960 10385 2.432444 ACCACCATCGGTTGTAATGTG 58.568 47.619 0.00 0.00 34.91 3.21
7961 10386 2.224670 ACCACCATCGGTTGTAATGTGT 60.225 45.455 0.00 0.00 34.91 3.72
7962 10387 2.817258 CCACCATCGGTTGTAATGTGTT 59.183 45.455 0.00 0.00 31.02 3.32
7963 10388 3.365868 CCACCATCGGTTGTAATGTGTTG 60.366 47.826 0.00 0.00 31.02 3.33
7964 10389 2.817258 ACCATCGGTTGTAATGTGTTGG 59.183 45.455 0.00 0.00 27.29 3.77
7965 10390 2.817258 CCATCGGTTGTAATGTGTTGGT 59.183 45.455 0.00 0.00 0.00 3.67
7966 10391 3.119990 CCATCGGTTGTAATGTGTTGGTC 60.120 47.826 0.00 0.00 0.00 4.02
7967 10392 3.195471 TCGGTTGTAATGTGTTGGTCA 57.805 42.857 0.00 0.00 0.00 4.02
7968 10393 3.745799 TCGGTTGTAATGTGTTGGTCAT 58.254 40.909 0.00 0.00 0.00 3.06
7969 10394 3.500299 TCGGTTGTAATGTGTTGGTCATG 59.500 43.478 0.00 0.00 0.00 3.07
7970 10395 3.500299 CGGTTGTAATGTGTTGGTCATGA 59.500 43.478 0.00 0.00 0.00 3.07
7971 10396 4.378356 CGGTTGTAATGTGTTGGTCATGAG 60.378 45.833 0.00 0.00 0.00 2.90
7972 10397 4.759693 GGTTGTAATGTGTTGGTCATGAGA 59.240 41.667 0.00 0.00 0.00 3.27
7973 10398 5.415701 GGTTGTAATGTGTTGGTCATGAGAT 59.584 40.000 0.00 0.00 0.00 2.75
7974 10399 6.071952 GGTTGTAATGTGTTGGTCATGAGATT 60.072 38.462 0.00 0.00 0.00 2.40
7975 10400 7.120579 GGTTGTAATGTGTTGGTCATGAGATTA 59.879 37.037 0.00 0.00 0.00 1.75
7976 10401 7.609760 TGTAATGTGTTGGTCATGAGATTAC 57.390 36.000 0.00 0.00 0.00 1.89
7977 10402 7.164803 TGTAATGTGTTGGTCATGAGATTACA 58.835 34.615 0.00 2.22 0.00 2.41
7978 10403 7.828717 TGTAATGTGTTGGTCATGAGATTACAT 59.171 33.333 0.00 1.30 0.00 2.29
7979 10404 7.707624 AATGTGTTGGTCATGAGATTACATT 57.292 32.000 14.54 14.54 33.03 2.71
8035 10498 2.486472 CCTGCTCAATGTCTTCAGGT 57.514 50.000 0.00 0.00 39.45 4.00
8043 10506 5.659463 CTCAATGTCTTCAGGTCTAGGAAG 58.341 45.833 0.00 0.00 41.42 3.46
8069 10532 5.193728 TCCATTTGGCTCTAGGGTAGAATTT 59.806 40.000 0.00 0.00 33.75 1.82
8198 10662 6.399249 CGCAAGCATGTAAAGAATTTTGTCTG 60.399 38.462 0.00 0.00 40.09 3.51
8199 10663 6.617105 GCAAGCATGTAAAGAATTTTGTCTGC 60.617 38.462 0.00 0.00 40.09 4.26
8200 10664 6.336842 AGCATGTAAAGAATTTTGTCTGCT 57.663 33.333 0.00 0.00 40.09 4.24
8201 10665 6.752168 AGCATGTAAAGAATTTTGTCTGCTT 58.248 32.000 0.00 0.00 40.09 3.91
8202 10666 7.885297 AGCATGTAAAGAATTTTGTCTGCTTA 58.115 30.769 0.00 0.00 40.09 3.09
8203 10667 8.359642 AGCATGTAAAGAATTTTGTCTGCTTAA 58.640 29.630 0.00 0.00 40.09 1.85
8204 10668 8.642020 GCATGTAAAGAATTTTGTCTGCTTAAG 58.358 33.333 0.00 0.00 40.09 1.85
8205 10669 9.897744 CATGTAAAGAATTTTGTCTGCTTAAGA 57.102 29.630 6.67 0.00 40.09 2.10
8217 10681 9.474920 TTTGTCTGCTTAAGAATTACAAAATGG 57.525 29.630 16.47 0.00 36.40 3.16
8218 10682 8.177119 TGTCTGCTTAAGAATTACAAAATGGT 57.823 30.769 6.67 0.00 36.40 3.55
8219 10683 8.296713 TGTCTGCTTAAGAATTACAAAATGGTC 58.703 33.333 6.67 0.00 36.40 4.02
8220 10684 8.296713 GTCTGCTTAAGAATTACAAAATGGTCA 58.703 33.333 6.67 0.00 36.40 4.02
8221 10685 8.855110 TCTGCTTAAGAATTACAAAATGGTCAA 58.145 29.630 6.67 0.00 29.54 3.18
8222 10686 8.810652 TGCTTAAGAATTACAAAATGGTCAAC 57.189 30.769 6.67 0.00 0.00 3.18
8223 10687 7.593273 TGCTTAAGAATTACAAAATGGTCAACG 59.407 33.333 6.67 0.00 0.00 4.10
8224 10688 7.806014 GCTTAAGAATTACAAAATGGTCAACGA 59.194 33.333 6.67 0.00 0.00 3.85
8225 10689 9.840427 CTTAAGAATTACAAAATGGTCAACGAT 57.160 29.630 0.00 0.00 0.00 3.73
8226 10690 9.619316 TTAAGAATTACAAAATGGTCAACGATG 57.381 29.630 0.00 0.00 0.00 3.84
8227 10691 7.214467 AGAATTACAAAATGGTCAACGATGT 57.786 32.000 0.00 0.00 0.00 3.06
8228 10692 7.305474 AGAATTACAAAATGGTCAACGATGTC 58.695 34.615 0.00 0.00 0.00 3.06
8229 10693 3.915437 ACAAAATGGTCAACGATGTCC 57.085 42.857 2.04 2.04 35.57 4.02
8274 10738 9.699410 TGAAGGAAGTATGGATGTTGAAATTAT 57.301 29.630 0.00 0.00 0.00 1.28
8278 10742 8.571336 GGAAGTATGGATGTTGAAATTATCCTG 58.429 37.037 5.91 0.00 40.77 3.86
8289 10753 7.890127 TGTTGAAATTATCCTGGAAAGTGAGAT 59.110 33.333 0.00 0.00 0.00 2.75
8305 10769 9.368674 GAAAGTGAGATCCTTAAGTTTACCTAC 57.631 37.037 0.97 0.00 0.00 3.18
8322 10786 7.724305 TTACCTACTGTGAATTGTCTGTTTC 57.276 36.000 0.00 0.00 0.00 2.78
8413 10879 6.855763 AATATCCTGGAGAGTGAGATCATC 57.144 41.667 1.52 0.00 0.00 2.92
8416 10882 4.356436 TCCTGGAGAGTGAGATCATCAAA 58.644 43.478 0.00 0.00 40.43 2.69
8476 10942 5.956068 AGAAGGTTTGAGATTGCTCTTTC 57.044 39.130 0.00 0.00 41.84 2.62
8487 10953 0.108585 TGCTCTTTCCAGGTGACCAC 59.891 55.000 3.63 0.00 0.00 4.16
8492 10958 0.478072 TTTCCAGGTGACCACAGCAT 59.522 50.000 3.63 0.00 45.57 3.79
8503 10969 3.261643 TGACCACAGCATAGAACATGAGT 59.738 43.478 0.00 0.00 0.00 3.41
8566 11032 1.481363 CAGCTCATCTTCCAGCAGAGA 59.519 52.381 0.00 0.00 38.18 3.10
8665 11133 7.636259 TTTCATCTTTTCTTTAATGCAACCG 57.364 32.000 0.00 0.00 0.00 4.44
8715 11183 7.364970 CAGAATGTTCAAACAGTTCATCATCA 58.635 34.615 14.61 0.00 43.04 3.07
8717 11185 7.446319 AGAATGTTCAAACAGTTCATCATCAGA 59.554 33.333 14.61 0.00 43.04 3.27
8777 11245 5.127491 TCAGGTGTTTCCGATGTTTAGTTT 58.873 37.500 0.00 0.00 41.99 2.66
8795 11263 7.548196 TTAGTTTTCATAATTGTAGGGCTCG 57.452 36.000 0.00 0.00 0.00 5.03
8804 11272 1.061546 TGTAGGGCTCGAAAAGGGTT 58.938 50.000 0.00 0.00 0.00 4.11
8805 11273 1.271163 TGTAGGGCTCGAAAAGGGTTG 60.271 52.381 0.00 0.00 0.00 3.77
8806 11274 1.002773 GTAGGGCTCGAAAAGGGTTGA 59.997 52.381 0.00 0.00 0.00 3.18
8813 11281 1.142060 TCGAAAAGGGTTGAGCAAGGA 59.858 47.619 0.00 0.00 0.00 3.36
8819 11287 1.918262 AGGGTTGAGCAAGGATCATCA 59.082 47.619 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.362639 AGTGCATAGCCCTAAATATTGAAATTG 58.637 33.333 0.00 0.00 0.00 2.32
38 39 7.361201 CCCAGTAACATCTTACAACATGAAGTG 60.361 40.741 0.00 0.00 35.56 3.16
47 48 6.601613 CCATTTAGCCCAGTAACATCTTACAA 59.398 38.462 0.00 0.00 35.56 2.41
67 68 6.815142 GTGCATGAAGCTCTAAATTTCCATTT 59.185 34.615 0.00 0.00 45.94 2.32
72 73 5.573337 AGGTGCATGAAGCTCTAAATTTC 57.427 39.130 0.00 0.00 45.94 2.17
81 82 0.407139 AGGGAAAGGTGCATGAAGCT 59.593 50.000 0.00 0.00 45.94 3.74
120 121 0.179062 ACGCTTCATCCTCATCCTGC 60.179 55.000 0.00 0.00 0.00 4.85
121 122 1.137675 TGACGCTTCATCCTCATCCTG 59.862 52.381 0.00 0.00 0.00 3.86
123 124 1.134699 TGTGACGCTTCATCCTCATCC 60.135 52.381 0.00 0.00 33.11 3.51
129 130 2.363807 CGAGTGTGACGCTTCATCC 58.636 57.895 0.00 0.00 33.11 3.51
150 151 2.094752 ACAGTTTTTATCCATGGTGCGC 60.095 45.455 12.58 0.00 0.00 6.09
151 152 3.848272 ACAGTTTTTATCCATGGTGCG 57.152 42.857 12.58 0.00 0.00 5.34
177 178 9.952188 TCGATACTCTTCATAAAATGTAGACAG 57.048 33.333 0.00 0.00 33.83 3.51
188 189 9.557061 ACACTAGTACATCGATACTCTTCATAA 57.443 33.333 4.10 0.00 36.74 1.90
209 210 3.718815 TCATTGTACACGTGCAACACTA 58.281 40.909 20.35 10.21 37.97 2.74
239 240 8.863872 TTTGGTAAAAATGGTTCTTGGAAAAA 57.136 26.923 0.00 0.00 0.00 1.94
240 241 8.863872 TTTTGGTAAAAATGGTTCTTGGAAAA 57.136 26.923 0.00 0.00 30.24 2.29
241 242 8.863872 TTTTTGGTAAAAATGGTTCTTGGAAA 57.136 26.923 0.00 0.00 35.57 3.13
322 353 9.751542 ACTCATGATAAAACCTTAGATACGAAG 57.248 33.333 0.00 0.00 0.00 3.79
387 418 9.877137 TTTGACATCGTGAATATTAATATGTGC 57.123 29.630 8.74 3.17 0.00 4.57
398 429 9.546428 AGTGATATTGATTTGACATCGTGAATA 57.454 29.630 0.00 0.00 0.00 1.75
405 436 9.716531 TGGATCTAGTGATATTGATTTGACATC 57.283 33.333 0.00 0.00 32.19 3.06
441 472 8.134895 GGTGAACACAATGTGAAAAAGATTAGA 58.865 33.333 21.34 0.00 36.96 2.10
445 476 6.219417 TGGTGAACACAATGTGAAAAAGAT 57.781 33.333 21.34 0.00 36.96 2.40
446 477 5.651387 TGGTGAACACAATGTGAAAAAGA 57.349 34.783 21.34 0.00 36.96 2.52
447 478 5.636965 TGTTGGTGAACACAATGTGAAAAAG 59.363 36.000 21.34 0.00 37.15 2.27
455 490 1.851666 GCGTTGTTGGTGAACACAATG 59.148 47.619 7.25 0.00 41.92 2.82
456 491 1.748493 AGCGTTGTTGGTGAACACAAT 59.252 42.857 7.25 0.00 41.92 2.71
475 510 0.040336 CAGCACAACAGAGCAGCAAG 60.040 55.000 0.00 0.00 0.00 4.01
487 522 1.243342 GCCACATAGCACCAGCACAA 61.243 55.000 0.00 0.00 45.49 3.33
502 537 1.740025 GAGTCTTTGTGCTATGGCCAC 59.260 52.381 8.16 0.00 37.74 5.01
504 539 2.012673 CAGAGTCTTTGTGCTATGGCC 58.987 52.381 0.00 0.00 37.74 5.36
508 543 3.260380 ACAGCTCAGAGTCTTTGTGCTAT 59.740 43.478 16.82 6.09 41.80 2.97
509 544 2.630098 ACAGCTCAGAGTCTTTGTGCTA 59.370 45.455 16.82 0.00 41.80 3.49
515 550 4.769488 TGTGATAGACAGCTCAGAGTCTTT 59.231 41.667 9.47 2.64 42.12 2.52
517 552 3.961849 TGTGATAGACAGCTCAGAGTCT 58.038 45.455 9.19 9.19 46.19 3.24
522 557 5.008619 ACTTGATGTGATAGACAGCTCAG 57.991 43.478 0.00 0.00 41.84 3.35
523 558 5.411831 AACTTGATGTGATAGACAGCTCA 57.588 39.130 0.00 0.00 41.84 4.26
524 559 6.148480 ACAAAACTTGATGTGATAGACAGCTC 59.852 38.462 0.00 0.00 41.84 4.09
525 560 6.000219 ACAAAACTTGATGTGATAGACAGCT 59.000 36.000 0.00 0.00 41.84 4.24
526 561 6.246420 ACAAAACTTGATGTGATAGACAGC 57.754 37.500 0.00 0.00 41.66 4.40
536 571 2.362077 GGAGCCACACAAAACTTGATGT 59.638 45.455 0.00 0.00 0.00 3.06
537 572 2.605338 CGGAGCCACACAAAACTTGATG 60.605 50.000 0.00 0.00 0.00 3.07
538 573 1.608590 CGGAGCCACACAAAACTTGAT 59.391 47.619 0.00 0.00 0.00 2.57
539 574 1.021202 CGGAGCCACACAAAACTTGA 58.979 50.000 0.00 0.00 0.00 3.02
540 575 0.030638 CCGGAGCCACACAAAACTTG 59.969 55.000 0.00 0.00 0.00 3.16
541 576 1.734388 GCCGGAGCCACACAAAACTT 61.734 55.000 5.05 0.00 0.00 2.66
542 577 2.193536 GCCGGAGCCACACAAAACT 61.194 57.895 5.05 0.00 0.00 2.66
543 578 2.010582 TTGCCGGAGCCACACAAAAC 62.011 55.000 5.05 0.00 38.69 2.43
544 579 1.733402 CTTGCCGGAGCCACACAAAA 61.733 55.000 5.05 0.00 38.69 2.44
545 580 2.124109 TTGCCGGAGCCACACAAA 60.124 55.556 5.05 0.00 38.69 2.83
546 581 2.594303 CTTGCCGGAGCCACACAA 60.594 61.111 5.05 0.00 38.69 3.33
547 582 4.641645 CCTTGCCGGAGCCACACA 62.642 66.667 5.05 0.00 38.69 3.72
550 585 4.785453 CTCCCTTGCCGGAGCCAC 62.785 72.222 5.05 0.00 43.01 5.01
556 591 3.350031 ATTGCCTCTCCCTTGCCGG 62.350 63.158 0.00 0.00 0.00 6.13
557 592 2.117156 CATTGCCTCTCCCTTGCCG 61.117 63.158 0.00 0.00 0.00 5.69
558 593 1.034292 GTCATTGCCTCTCCCTTGCC 61.034 60.000 0.00 0.00 0.00 4.52
559 594 1.372087 CGTCATTGCCTCTCCCTTGC 61.372 60.000 0.00 0.00 0.00 4.01
560 595 0.745845 CCGTCATTGCCTCTCCCTTG 60.746 60.000 0.00 0.00 0.00 3.61
561 596 1.604378 CCGTCATTGCCTCTCCCTT 59.396 57.895 0.00 0.00 0.00 3.95
562 597 2.370445 CCCGTCATTGCCTCTCCCT 61.370 63.158 0.00 0.00 0.00 4.20
563 598 2.190578 CCCGTCATTGCCTCTCCC 59.809 66.667 0.00 0.00 0.00 4.30
564 599 2.514824 GCCCGTCATTGCCTCTCC 60.515 66.667 0.00 0.00 0.00 3.71
565 600 1.817099 CTGCCCGTCATTGCCTCTC 60.817 63.158 0.00 0.00 0.00 3.20
566 601 2.270205 CTGCCCGTCATTGCCTCT 59.730 61.111 0.00 0.00 0.00 3.69
567 602 3.512516 GCTGCCCGTCATTGCCTC 61.513 66.667 0.00 0.00 0.00 4.70
568 603 4.349503 TGCTGCCCGTCATTGCCT 62.350 61.111 0.00 0.00 0.00 4.75
569 604 4.120331 GTGCTGCCCGTCATTGCC 62.120 66.667 0.00 0.00 0.00 4.52
570 605 4.465512 CGTGCTGCCCGTCATTGC 62.466 66.667 0.00 0.00 0.00 3.56
571 606 3.049674 ACGTGCTGCCCGTCATTG 61.050 61.111 3.87 0.00 31.97 2.82
576 611 3.454587 TTGAAGACGTGCTGCCCGT 62.455 57.895 10.48 10.48 42.06 5.28
577 612 2.664851 TTGAAGACGTGCTGCCCG 60.665 61.111 2.26 2.26 0.00 6.13
578 613 2.617274 GGTTGAAGACGTGCTGCCC 61.617 63.158 0.00 0.00 0.00 5.36
579 614 2.617274 GGGTTGAAGACGTGCTGCC 61.617 63.158 0.00 0.00 0.00 4.85
580 615 2.946762 GGGTTGAAGACGTGCTGC 59.053 61.111 0.00 0.00 0.00 5.25
581 616 2.954753 GCGGGTTGAAGACGTGCTG 61.955 63.158 0.00 0.00 0.00 4.41
582 617 2.660258 AAGCGGGTTGAAGACGTGCT 62.660 55.000 0.00 0.00 39.98 4.40
588 623 0.884704 GCACTGAAGCGGGTTGAAGA 60.885 55.000 0.00 0.00 0.00 2.87
596 631 1.524355 CGATTATGAGCACTGAAGCGG 59.476 52.381 0.00 0.00 40.15 5.52
597 632 2.463876 TCGATTATGAGCACTGAAGCG 58.536 47.619 0.00 0.00 40.15 4.68
601 636 7.148171 CCATCTAGTATCGATTATGAGCACTGA 60.148 40.741 1.71 0.72 0.00 3.41
602 637 6.971756 CCATCTAGTATCGATTATGAGCACTG 59.028 42.308 1.71 0.00 0.00 3.66
603 638 6.887002 TCCATCTAGTATCGATTATGAGCACT 59.113 38.462 1.71 1.16 0.00 4.40
604 639 6.970043 GTCCATCTAGTATCGATTATGAGCAC 59.030 42.308 1.71 0.00 0.00 4.40
605 640 6.887002 AGTCCATCTAGTATCGATTATGAGCA 59.113 38.462 1.71 0.00 0.00 4.26
606 641 7.328277 AGTCCATCTAGTATCGATTATGAGC 57.672 40.000 1.71 0.00 0.00 4.26
612 647 9.693739 AGATTCATAGTCCATCTAGTATCGATT 57.306 33.333 1.71 0.00 31.67 3.34
613 648 9.119418 CAGATTCATAGTCCATCTAGTATCGAT 57.881 37.037 2.16 2.16 31.67 3.59
615 650 8.499403 TCAGATTCATAGTCCATCTAGTATCG 57.501 38.462 0.00 0.00 31.67 2.92
618 653 8.526978 GCATTCAGATTCATAGTCCATCTAGTA 58.473 37.037 0.00 0.00 31.67 1.82
619 654 7.015974 TGCATTCAGATTCATAGTCCATCTAGT 59.984 37.037 0.00 0.00 31.67 2.57
621 656 7.307131 TGCATTCAGATTCATAGTCCATCTA 57.693 36.000 0.00 0.00 0.00 1.98
624 659 7.834881 AATTGCATTCAGATTCATAGTCCAT 57.165 32.000 0.00 0.00 0.00 3.41
661 2335 5.227908 CCACTGTCTACTACAACGAACAAT 58.772 41.667 0.00 0.00 37.74 2.71
722 2408 4.607239 ACAAGTATTTCTAGACGGAGGGA 58.393 43.478 0.00 0.00 0.00 4.20
723 2409 4.497674 CGACAAGTATTTCTAGACGGAGGG 60.498 50.000 0.00 0.00 0.00 4.30
724 2410 4.497674 CCGACAAGTATTTCTAGACGGAGG 60.498 50.000 6.77 0.00 37.25 4.30
725 2411 4.334759 TCCGACAAGTATTTCTAGACGGAG 59.665 45.833 10.31 0.00 38.21 4.63
726 2412 4.264253 TCCGACAAGTATTTCTAGACGGA 58.736 43.478 10.31 10.31 39.50 4.69
727 2413 4.334759 TCTCCGACAAGTATTTCTAGACGG 59.665 45.833 6.36 6.36 36.83 4.79
728 2414 5.481200 TCTCCGACAAGTATTTCTAGACG 57.519 43.478 0.00 0.00 0.00 4.18
729 2415 7.254151 GCATTTCTCCGACAAGTATTTCTAGAC 60.254 40.741 0.00 0.00 0.00 2.59
730 2416 6.757010 GCATTTCTCCGACAAGTATTTCTAGA 59.243 38.462 0.00 0.00 0.00 2.43
731 2417 6.291849 CGCATTTCTCCGACAAGTATTTCTAG 60.292 42.308 0.00 0.00 0.00 2.43
732 2418 5.518847 CGCATTTCTCCGACAAGTATTTCTA 59.481 40.000 0.00 0.00 0.00 2.10
733 2419 4.330074 CGCATTTCTCCGACAAGTATTTCT 59.670 41.667 0.00 0.00 0.00 2.52
734 2420 4.092968 ACGCATTTCTCCGACAAGTATTTC 59.907 41.667 0.00 0.00 0.00 2.17
735 2421 4.000988 ACGCATTTCTCCGACAAGTATTT 58.999 39.130 0.00 0.00 0.00 1.40
736 2422 3.596214 ACGCATTTCTCCGACAAGTATT 58.404 40.909 0.00 0.00 0.00 1.89
737 2423 3.247006 ACGCATTTCTCCGACAAGTAT 57.753 42.857 0.00 0.00 0.00 2.12
738 2424 2.736144 ACGCATTTCTCCGACAAGTA 57.264 45.000 0.00 0.00 0.00 2.24
739 2425 2.736144 TACGCATTTCTCCGACAAGT 57.264 45.000 0.00 0.00 0.00 3.16
740 2426 4.398549 TTTTACGCATTTCTCCGACAAG 57.601 40.909 0.00 0.00 0.00 3.16
741 2427 4.815040 TTTTTACGCATTTCTCCGACAA 57.185 36.364 0.00 0.00 0.00 3.18
742 2428 4.378978 CCATTTTTACGCATTTCTCCGACA 60.379 41.667 0.00 0.00 0.00 4.35
743 2429 4.095610 CCATTTTTACGCATTTCTCCGAC 58.904 43.478 0.00 0.00 0.00 4.79
744 2430 4.004314 TCCATTTTTACGCATTTCTCCGA 58.996 39.130 0.00 0.00 0.00 4.55
745 2431 4.349663 TCCATTTTTACGCATTTCTCCG 57.650 40.909 0.00 0.00 0.00 4.63
746 2432 5.650543 ACATCCATTTTTACGCATTTCTCC 58.349 37.500 0.00 0.00 0.00 3.71
747 2433 8.856490 AATACATCCATTTTTACGCATTTCTC 57.144 30.769 0.00 0.00 0.00 2.87
752 2438 9.730420 GTTCTAAATACATCCATTTTTACGCAT 57.270 29.630 0.00 0.00 30.84 4.73
753 2439 8.952278 AGTTCTAAATACATCCATTTTTACGCA 58.048 29.630 0.00 0.00 30.84 5.24
780 2466 8.871125 AGGAATGGATGTATCTAGACGTATTTT 58.129 33.333 0.00 0.00 0.00 1.82
781 2467 8.423906 AGGAATGGATGTATCTAGACGTATTT 57.576 34.615 0.00 0.00 0.00 1.40
782 2468 7.891183 AGAGGAATGGATGTATCTAGACGTATT 59.109 37.037 0.00 0.00 0.00 1.89
783 2469 7.406916 AGAGGAATGGATGTATCTAGACGTAT 58.593 38.462 0.00 0.00 0.00 3.06
784 2470 6.780901 AGAGGAATGGATGTATCTAGACGTA 58.219 40.000 0.00 0.00 0.00 3.57
785 2471 5.636123 AGAGGAATGGATGTATCTAGACGT 58.364 41.667 0.00 0.00 0.00 4.34
786 2472 7.175119 TGTTAGAGGAATGGATGTATCTAGACG 59.825 40.741 0.00 0.00 0.00 4.18
787 2473 8.410673 TGTTAGAGGAATGGATGTATCTAGAC 57.589 38.462 0.00 0.00 0.00 2.59
788 2474 9.083422 CTTGTTAGAGGAATGGATGTATCTAGA 57.917 37.037 0.00 0.00 0.00 2.43
789 2475 8.865090 ACTTGTTAGAGGAATGGATGTATCTAG 58.135 37.037 0.00 0.00 0.00 2.43
790 2476 8.783660 ACTTGTTAGAGGAATGGATGTATCTA 57.216 34.615 0.00 0.00 0.00 1.98
791 2477 7.682787 ACTTGTTAGAGGAATGGATGTATCT 57.317 36.000 0.00 0.00 0.00 1.98
794 2480 9.832445 GAAATACTTGTTAGAGGAATGGATGTA 57.168 33.333 0.00 0.00 0.00 2.29
795 2481 7.775561 GGAAATACTTGTTAGAGGAATGGATGT 59.224 37.037 0.00 0.00 0.00 3.06
796 2482 7.041780 CGGAAATACTTGTTAGAGGAATGGATG 60.042 40.741 0.00 0.00 0.00 3.51
797 2483 6.992715 CGGAAATACTTGTTAGAGGAATGGAT 59.007 38.462 0.00 0.00 0.00 3.41
798 2484 6.346096 CGGAAATACTTGTTAGAGGAATGGA 58.654 40.000 0.00 0.00 0.00 3.41
799 2485 5.527582 CCGGAAATACTTGTTAGAGGAATGG 59.472 44.000 0.00 0.00 0.00 3.16
800 2486 6.258068 GTCCGGAAATACTTGTTAGAGGAATG 59.742 42.308 5.23 0.00 0.00 2.67
801 2487 6.346896 GTCCGGAAATACTTGTTAGAGGAAT 58.653 40.000 5.23 0.00 0.00 3.01
802 2488 5.622914 CGTCCGGAAATACTTGTTAGAGGAA 60.623 44.000 5.23 0.00 0.00 3.36
803 2489 4.142315 CGTCCGGAAATACTTGTTAGAGGA 60.142 45.833 5.23 0.00 0.00 3.71
804 2490 4.110482 CGTCCGGAAATACTTGTTAGAGG 58.890 47.826 5.23 0.00 0.00 3.69
805 2491 4.110482 CCGTCCGGAAATACTTGTTAGAG 58.890 47.826 5.23 0.00 37.50 2.43
806 2492 3.763360 TCCGTCCGGAAATACTTGTTAGA 59.237 43.478 5.23 0.00 42.05 2.10
807 2493 4.110482 CTCCGTCCGGAAATACTTGTTAG 58.890 47.826 5.23 0.00 44.66 2.34
808 2494 3.119029 CCTCCGTCCGGAAATACTTGTTA 60.119 47.826 5.23 0.00 44.66 2.41
809 2495 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
810 2496 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
811 2497 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
812 2498 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
813 2499 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
814 2500 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
815 2501 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
816 2502 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
817 2503 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
818 2504 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
819 2505 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
820 2506 0.817229 GTAGTACTCCCTCCGTCCGG 60.817 65.000 0.00 0.00 0.00 5.14
821 2507 1.156645 CGTAGTACTCCCTCCGTCCG 61.157 65.000 0.00 0.00 0.00 4.79
822 2508 0.179000 TCGTAGTACTCCCTCCGTCC 59.821 60.000 0.00 0.00 0.00 4.79
823 2509 1.137872 TCTCGTAGTACTCCCTCCGTC 59.862 57.143 0.00 0.00 0.00 4.79
824 2510 1.134551 GTCTCGTAGTACTCCCTCCGT 60.135 57.143 0.00 0.00 0.00 4.69
825 2511 1.580815 GTCTCGTAGTACTCCCTCCG 58.419 60.000 0.00 0.00 0.00 4.63
826 2512 1.134551 ACGTCTCGTAGTACTCCCTCC 60.135 57.143 0.00 0.00 38.73 4.30
827 2513 2.307934 ACGTCTCGTAGTACTCCCTC 57.692 55.000 0.00 0.00 38.73 4.30
828 2514 2.480416 CGTACGTCTCGTAGTACTCCCT 60.480 54.545 7.22 0.00 43.06 4.20
829 2515 1.855360 CGTACGTCTCGTAGTACTCCC 59.145 57.143 7.22 0.00 43.06 4.30
830 2516 1.855360 CCGTACGTCTCGTAGTACTCC 59.145 57.143 15.21 0.00 43.06 3.85
831 2517 2.280183 CACCGTACGTCTCGTAGTACTC 59.720 54.545 15.21 0.00 43.06 2.59
832 2518 2.263077 CACCGTACGTCTCGTAGTACT 58.737 52.381 15.21 0.00 43.06 2.73
833 2519 1.324736 CCACCGTACGTCTCGTAGTAC 59.675 57.143 15.21 0.00 43.06 2.73
834 2520 1.640428 CCACCGTACGTCTCGTAGTA 58.360 55.000 15.21 0.00 43.06 1.82
835 2521 1.021390 CCCACCGTACGTCTCGTAGT 61.021 60.000 15.21 0.00 43.06 2.73
836 2522 1.717937 CCCACCGTACGTCTCGTAG 59.282 63.158 15.21 0.00 43.06 3.51
837 2523 2.398554 GCCCACCGTACGTCTCGTA 61.399 63.158 15.21 0.00 41.54 3.43
838 2524 3.741476 GCCCACCGTACGTCTCGT 61.741 66.667 15.21 1.41 44.35 4.18
839 2525 3.678717 CTGCCCACCGTACGTCTCG 62.679 68.421 15.21 0.00 0.00 4.04
853 2539 2.434359 GTACCTGTCACCGCTGCC 60.434 66.667 0.00 0.00 0.00 4.85
899 2599 0.173708 GAGGATCGTGTGGACTGGAC 59.826 60.000 0.00 0.00 0.00 4.02
917 2617 1.283905 TCTGTAGTGGACGGATGGAGA 59.716 52.381 0.00 0.00 38.61 3.71
918 2618 1.678627 CTCTGTAGTGGACGGATGGAG 59.321 57.143 0.00 0.00 42.76 3.86
919 2619 1.005569 ACTCTGTAGTGGACGGATGGA 59.994 52.381 0.00 0.00 42.76 3.41
944 2646 2.050269 CGGAGTGGGACAAGTCTGT 58.950 57.895 0.00 0.00 44.16 3.41
1362 3068 2.841988 GCGAGCTGGAGGGAGGAT 60.842 66.667 0.00 0.00 0.00 3.24
1380 3086 2.320781 GAGAGAGCATTACCTAGGGCA 58.679 52.381 14.81 0.00 0.00 5.36
1391 3097 1.028868 GCCAAAAGCGGAGAGAGCAT 61.029 55.000 0.00 0.00 37.01 3.79
1392 3098 1.672356 GCCAAAAGCGGAGAGAGCA 60.672 57.895 0.00 0.00 37.01 4.26
1418 3173 1.670949 AACCAATGCCGCAACACACA 61.671 50.000 0.00 0.00 0.00 3.72
1436 3194 1.442886 ATTCAGTGCCCTCCCCCAAA 61.443 55.000 0.00 0.00 0.00 3.28
1472 3230 4.811969 TGCGTTTGGTAGGAAGAAGATA 57.188 40.909 0.00 0.00 0.00 1.98
1494 3252 4.719773 ACTACACCATACTGGCAATTAGGA 59.280 41.667 3.14 0.00 42.67 2.94
1519 3277 6.591935 TCCATATCCCAATTTGTCAGAGTAC 58.408 40.000 0.00 0.00 0.00 2.73
1709 3756 1.030457 GCCCTGAAATGAGAGCCATG 58.970 55.000 0.00 0.00 35.24 3.66
1855 3903 8.816894 CATATAAGACCAAGGATATGTGTAGGT 58.183 37.037 0.00 0.00 30.78 3.08
1915 3963 0.179166 CAGCCAACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
1923 3971 0.318107 GATGCACACAGCCAACACAC 60.318 55.000 0.00 0.00 44.83 3.82
1924 3972 0.750911 TGATGCACACAGCCAACACA 60.751 50.000 0.00 0.00 44.83 3.72
1946 3994 1.147824 CACCCAGCCTCTGCATAGG 59.852 63.158 13.70 13.70 41.13 2.57
1973 4021 7.182817 AGAGGATACATAACAGCTAACACAA 57.817 36.000 0.00 0.00 41.41 3.33
2076 4125 7.064134 TGCCGAAGCATTAATAGTATATTTCCG 59.936 37.037 0.00 0.00 46.52 4.30
2109 4158 2.762535 AGTTGGTAATCACTGTCCCG 57.237 50.000 0.00 0.00 0.00 5.14
2117 4166 8.851145 CATACTCTAGAGCTAAGTTGGTAATCA 58.149 37.037 19.97 0.00 0.00 2.57
2183 4233 5.835113 TGCAAAGATTTATCCAGCTTACC 57.165 39.130 0.00 0.00 0.00 2.85
2676 4765 0.034059 ACTCCTCCAGCACTTCGTTG 59.966 55.000 0.00 0.00 0.00 4.10
2694 4783 6.698380 TCTAATGACAAAAGTAGTCCTCCAC 58.302 40.000 0.00 0.00 35.15 4.02
2695 4784 6.928348 TCTAATGACAAAAGTAGTCCTCCA 57.072 37.500 0.00 0.00 35.15 3.86
2696 4785 8.261522 AGAATCTAATGACAAAAGTAGTCCTCC 58.738 37.037 0.00 0.00 35.15 4.30
2697 4786 9.092876 CAGAATCTAATGACAAAAGTAGTCCTC 57.907 37.037 0.00 0.00 35.15 3.71
2698 4787 8.598041 ACAGAATCTAATGACAAAAGTAGTCCT 58.402 33.333 0.00 0.00 35.15 3.85
2699 4788 8.779354 ACAGAATCTAATGACAAAAGTAGTCC 57.221 34.615 0.00 0.00 35.15 3.85
2930 5021 3.181448 ACCGGTAGAACCAAACATGACTT 60.181 43.478 4.49 0.00 38.47 3.01
3216 5309 4.274602 TGTTTGGCTGGTTATACTCGAA 57.725 40.909 0.00 0.00 0.00 3.71
3303 5396 3.971150 TCATAGTTTTTGTGCAAACCCG 58.029 40.909 0.00 0.00 37.36 5.28
3472 5566 8.251750 TGAAAAATTGAGTTGTATCTACGAGG 57.748 34.615 0.00 0.00 0.00 4.63
3562 5656 3.482436 TCACTAACAACGCAAGGGAAAT 58.518 40.909 0.00 0.00 46.39 2.17
3603 5697 3.334691 TCCACAATAAGCCTTGAAGTCG 58.665 45.455 0.00 0.00 0.00 4.18
4220 6317 6.318648 TCAGTGGCAACTATAATGATTGAACC 59.681 38.462 0.00 0.00 33.79 3.62
4485 6584 1.321474 CGGCACCAGCAATTCCATAT 58.679 50.000 0.00 0.00 44.61 1.78
4752 6864 0.577269 GAGGCTATTTGTGTAGCGCG 59.423 55.000 0.00 0.00 46.29 6.86
4864 6976 3.818387 CAACAATCTGAGCATGTGTCAC 58.182 45.455 0.00 0.00 0.00 3.67
5112 7224 3.015327 AGAAGTCGCGGAGTATGTAAGT 58.985 45.455 6.13 0.00 0.00 2.24
5235 7347 6.477033 CCATGACCTTCACGAGATAAAGTAAG 59.523 42.308 0.00 0.00 0.00 2.34
5427 7539 8.662781 TGATATTCCTGCTAAAGTATCAACAC 57.337 34.615 0.00 0.00 0.00 3.32
5454 7566 5.823209 TTGCACAGATTCTTGGATATGTG 57.177 39.130 11.19 11.19 46.63 3.21
5642 7754 3.632643 TGTTGGCTTATCTCAGCATCA 57.367 42.857 0.00 0.00 42.10 3.07
5789 8040 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
5790 8041 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
5791 8042 5.247564 TGTTCTTATATTATGGGACGGAGGG 59.752 44.000 0.00 0.00 0.00 4.30
5792 8043 6.354794 TGTTCTTATATTATGGGACGGAGG 57.645 41.667 0.00 0.00 0.00 4.30
5793 8044 8.848474 AAATGTTCTTATATTATGGGACGGAG 57.152 34.615 0.00 0.00 0.00 4.63
5794 8045 9.635404 AAAAATGTTCTTATATTATGGGACGGA 57.365 29.630 0.00 0.00 0.00 4.69
5823 8074 7.430992 TTGACACTACAGTACTACACTAGTG 57.569 40.000 21.44 21.44 44.41 2.74
5824 8075 8.455903 TTTTGACACTACAGTACTACACTAGT 57.544 34.615 0.00 0.00 42.68 2.57
5825 8076 9.178427 GTTTTTGACACTACAGTACTACACTAG 57.822 37.037 0.00 0.00 34.98 2.57
5826 8077 8.685427 TGTTTTTGACACTACAGTACTACACTA 58.315 33.333 0.00 0.00 31.66 2.74
5827 8078 7.549839 TGTTTTTGACACTACAGTACTACACT 58.450 34.615 0.00 0.00 33.04 3.55
5828 8079 7.760131 TGTTTTTGACACTACAGTACTACAC 57.240 36.000 0.00 0.00 32.00 2.90
5842 8093 9.967451 TCCCATAATATAAGAGTGTTTTTGACA 57.033 29.630 0.00 0.00 35.42 3.58
5844 8095 9.104965 CGTCCCATAATATAAGAGTGTTTTTGA 57.895 33.333 0.00 0.00 0.00 2.69
5845 8096 8.342634 CCGTCCCATAATATAAGAGTGTTTTTG 58.657 37.037 0.00 0.00 0.00 2.44
5846 8097 8.269317 TCCGTCCCATAATATAAGAGTGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
5847 8098 7.798071 TCCGTCCCATAATATAAGAGTGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
5848 8099 7.369551 TCCGTCCCATAATATAAGAGTGTTT 57.630 36.000 0.00 0.00 0.00 2.83
5849 8100 6.989155 TCCGTCCCATAATATAAGAGTGTT 57.011 37.500 0.00 0.00 0.00 3.32
5850 8101 6.070767 CCATCCGTCCCATAATATAAGAGTGT 60.071 42.308 0.00 0.00 0.00 3.55
5851 8102 6.154534 TCCATCCGTCCCATAATATAAGAGTG 59.845 42.308 0.00 0.00 0.00 3.51
5852 8103 6.261435 TCCATCCGTCCCATAATATAAGAGT 58.739 40.000 0.00 0.00 0.00 3.24
5853 8104 6.381420 ACTCCATCCGTCCCATAATATAAGAG 59.619 42.308 0.00 0.00 0.00 2.85
5854 8105 6.261435 ACTCCATCCGTCCCATAATATAAGA 58.739 40.000 0.00 0.00 0.00 2.10
5855 8106 6.546428 ACTCCATCCGTCCCATAATATAAG 57.454 41.667 0.00 0.00 0.00 1.73
5856 8107 8.618240 ATTACTCCATCCGTCCCATAATATAA 57.382 34.615 0.00 0.00 0.00 0.98
5857 8108 9.717994 TTATTACTCCATCCGTCCCATAATATA 57.282 33.333 0.00 0.00 0.00 0.86
5858 8109 8.618240 TTATTACTCCATCCGTCCCATAATAT 57.382 34.615 0.00 0.00 0.00 1.28
5859 8110 8.618240 ATTATTACTCCATCCGTCCCATAATA 57.382 34.615 0.00 0.00 0.00 0.98
5860 8111 6.945636 TTATTACTCCATCCGTCCCATAAT 57.054 37.500 0.00 0.00 0.00 1.28
5861 8112 6.729100 AGATTATTACTCCATCCGTCCCATAA 59.271 38.462 0.00 0.00 0.00 1.90
5862 8113 6.261435 AGATTATTACTCCATCCGTCCCATA 58.739 40.000 0.00 0.00 0.00 2.74
5863 8114 5.094387 AGATTATTACTCCATCCGTCCCAT 58.906 41.667 0.00 0.00 0.00 4.00
5864 8115 4.489737 AGATTATTACTCCATCCGTCCCA 58.510 43.478 0.00 0.00 0.00 4.37
5865 8116 5.485209 AAGATTATTACTCCATCCGTCCC 57.515 43.478 0.00 0.00 0.00 4.46
5866 8117 9.152595 GAAATAAGATTATTACTCCATCCGTCC 57.847 37.037 0.00 0.00 33.25 4.79
5867 8118 8.861101 CGAAATAAGATTATTACTCCATCCGTC 58.139 37.037 0.00 0.00 33.25 4.79
5868 8119 8.582437 TCGAAATAAGATTATTACTCCATCCGT 58.418 33.333 0.00 0.00 33.25 4.69
5869 8120 8.981724 TCGAAATAAGATTATTACTCCATCCG 57.018 34.615 0.00 0.00 33.25 4.18
6047 8314 5.897377 TTTGCTCTAATACAGGGAAAAGC 57.103 39.130 0.00 0.00 25.84 3.51
6153 8420 3.449746 AAATGCAGCCCCACTACTTTA 57.550 42.857 0.00 0.00 0.00 1.85
6390 8657 8.928733 CAGAACATGCAAAAATTAAAGCAGTAT 58.071 29.630 0.00 0.00 40.71 2.12
6427 8694 3.998099 TCTGAGGAGCAATCTGTATCG 57.002 47.619 0.00 0.00 0.00 2.92
6508 8775 9.384764 GGACAATATATGGTAAAGATAGCCTTC 57.615 37.037 0.00 0.00 33.02 3.46
6661 9060 7.338475 GATCGATATGATGGAAGACAGCCTTC 61.338 46.154 0.00 0.00 42.98 3.46
6684 9083 7.398024 AGACAGCAAACAATTCCTAACTAGAT 58.602 34.615 0.00 0.00 0.00 1.98
6756 9155 4.520492 CAGAGAAACCAAGTTATGCAAGGT 59.480 41.667 0.00 0.00 0.00 3.50
6785 9184 6.335777 AGTCATGGAAATAAAGCATGAAAGC 58.664 36.000 0.00 0.00 34.58 3.51
6826 9228 6.111768 AGTGCAGCTGAATTATTAGTTTCG 57.888 37.500 20.43 0.00 0.00 3.46
6850 9252 5.565723 CACTTTGTGCATCTGTTAAAAGC 57.434 39.130 0.00 0.00 0.00 3.51
7008 9411 7.667043 TCAAGATGGATACCGCATTAATTAC 57.333 36.000 0.00 0.00 0.00 1.89
7023 9426 6.429078 GCAGTATCATAGCAAATCAAGATGGA 59.571 38.462 0.00 0.00 0.00 3.41
7033 9437 7.864108 ATTGTTACTGCAGTATCATAGCAAA 57.136 32.000 29.21 18.15 37.89 3.68
7100 9506 3.256631 AGCCAATGTTAGGTTTTCAGCTG 59.743 43.478 7.63 7.63 31.45 4.24
7114 9520 2.346766 TCGCATTATCCAGCCAATGT 57.653 45.000 0.00 0.00 35.12 2.71
7131 9537 7.488187 AAGATAACCATCAGACATTTCATCG 57.512 36.000 0.00 0.00 33.21 3.84
7151 9557 2.909006 TCCAGCCTGAGAACAGAAAGAT 59.091 45.455 0.00 0.00 46.03 2.40
7246 9652 5.184287 ACAGAAAAAGGAAACAAGGAAACGA 59.816 36.000 0.00 0.00 0.00 3.85
7281 9688 6.928979 AGAAAAATAAAAACCAAAACCCCG 57.071 33.333 0.00 0.00 0.00 5.73
7330 9737 4.864704 TTTTTCAAGTTGGCATACCCTC 57.135 40.909 2.34 0.00 33.59 4.30
7354 9763 8.511604 TCATATTCAAAAGTTCTGGATCCTTC 57.488 34.615 14.23 0.81 0.00 3.46
7363 9772 6.049955 TCGGACCTCATATTCAAAAGTTCT 57.950 37.500 0.00 0.00 0.00 3.01
7364 9773 6.403309 GGTTCGGACCTCATATTCAAAAGTTC 60.403 42.308 5.31 0.00 42.99 3.01
7367 9776 4.941263 TGGTTCGGACCTCATATTCAAAAG 59.059 41.667 15.59 0.00 46.66 2.27
7384 9793 2.099098 GGTCCTATTTTGCCATGGTTCG 59.901 50.000 14.67 0.00 0.00 3.95
7393 9802 3.445096 AGCAGATTGTGGTCCTATTTTGC 59.555 43.478 0.00 0.00 27.31 3.68
7467 9887 0.179015 TTTACTTGCCGGGCAGTGAA 60.179 50.000 22.59 19.75 40.61 3.18
7477 9897 5.296748 TGAATTTTGGCTCTTTTACTTGCC 58.703 37.500 0.00 0.00 45.10 4.52
7502 9922 4.394300 CAGAAGAACTATTCAAGGTGGCAG 59.606 45.833 0.00 0.00 0.00 4.85
7523 9943 9.595357 GACTTCTAAAAGAATAACCGAAAACAG 57.405 33.333 0.00 0.00 33.13 3.16
7621 10043 5.452496 CCAGCATAGTGTCAAGCTACTACAT 60.452 44.000 0.00 0.00 35.19 2.29
7623 10045 4.142138 ACCAGCATAGTGTCAAGCTACTAC 60.142 45.833 0.00 0.00 35.19 2.73
7749 10171 3.827722 ACCGACTCTGAAATGGGAAAAA 58.172 40.909 0.00 0.00 0.00 1.94
7751 10173 3.502123 AACCGACTCTGAAATGGGAAA 57.498 42.857 0.00 0.00 0.00 3.13
7817 10239 5.299148 TCAGGCTGGTTGAAATTTTCATTG 58.701 37.500 15.73 5.15 39.84 2.82
7820 10242 3.243839 GCTCAGGCTGGTTGAAATTTTCA 60.244 43.478 15.73 7.74 35.02 2.69
7867 10289 1.370609 TGTTGTCGCCTCGTTTCAAA 58.629 45.000 0.00 0.00 0.00 2.69
7876 10298 0.515564 GCGTGTATTTGTTGTCGCCT 59.484 50.000 0.00 0.00 38.16 5.52
7910 10335 5.475909 ACAGACAATGCTGAATGATGTTTCT 59.524 36.000 10.68 0.00 39.20 2.52
7948 10373 3.500299 TCATGACCAACACATTACAACCG 59.500 43.478 0.00 0.00 0.00 4.44
7949 10374 4.759693 TCTCATGACCAACACATTACAACC 59.240 41.667 0.00 0.00 0.00 3.77
7950 10375 5.940192 TCTCATGACCAACACATTACAAC 57.060 39.130 0.00 0.00 0.00 3.32
7952 10377 7.164803 TGTAATCTCATGACCAACACATTACA 58.835 34.615 0.00 0.00 33.15 2.41
7954 10379 8.676401 CAATGTAATCTCATGACCAACACATTA 58.324 33.333 13.42 0.00 33.59 1.90
7955 10380 7.363181 CCAATGTAATCTCATGACCAACACATT 60.363 37.037 10.12 10.12 35.17 2.71
7956 10381 6.095860 CCAATGTAATCTCATGACCAACACAT 59.904 38.462 0.00 0.00 0.00 3.21
7957 10382 5.415389 CCAATGTAATCTCATGACCAACACA 59.585 40.000 0.00 0.00 0.00 3.72
7959 10384 4.398988 GCCAATGTAATCTCATGACCAACA 59.601 41.667 0.00 0.00 0.00 3.33
7960 10385 4.641989 AGCCAATGTAATCTCATGACCAAC 59.358 41.667 0.00 0.00 0.00 3.77
7961 10386 4.641541 CAGCCAATGTAATCTCATGACCAA 59.358 41.667 0.00 0.00 0.00 3.67
7962 10387 4.201657 CAGCCAATGTAATCTCATGACCA 58.798 43.478 0.00 0.00 0.00 4.02
7963 10388 3.004106 GCAGCCAATGTAATCTCATGACC 59.996 47.826 0.00 0.00 0.00 4.02
7964 10389 3.628942 TGCAGCCAATGTAATCTCATGAC 59.371 43.478 0.00 0.00 0.00 3.06
7965 10390 3.628942 GTGCAGCCAATGTAATCTCATGA 59.371 43.478 0.00 0.00 0.00 3.07
7966 10391 3.379057 TGTGCAGCCAATGTAATCTCATG 59.621 43.478 0.00 0.00 0.00 3.07
7967 10392 3.623703 TGTGCAGCCAATGTAATCTCAT 58.376 40.909 0.00 0.00 0.00 2.90
7968 10393 3.070476 TGTGCAGCCAATGTAATCTCA 57.930 42.857 0.00 0.00 0.00 3.27
7969 10394 3.628942 TCATGTGCAGCCAATGTAATCTC 59.371 43.478 0.00 0.00 0.00 2.75
7970 10395 3.623703 TCATGTGCAGCCAATGTAATCT 58.376 40.909 0.00 0.00 0.00 2.40
7971 10396 4.579454 ATCATGTGCAGCCAATGTAATC 57.421 40.909 0.00 0.00 0.00 1.75
7972 10397 5.829391 TCTTATCATGTGCAGCCAATGTAAT 59.171 36.000 0.00 0.00 0.00 1.89
7973 10398 5.192176 TCTTATCATGTGCAGCCAATGTAA 58.808 37.500 0.00 3.38 0.00 2.41
7974 10399 4.779696 TCTTATCATGTGCAGCCAATGTA 58.220 39.130 0.00 0.00 0.00 2.29
7975 10400 3.623703 TCTTATCATGTGCAGCCAATGT 58.376 40.909 0.00 0.00 0.00 2.71
7976 10401 4.848562 ATCTTATCATGTGCAGCCAATG 57.151 40.909 0.00 0.00 0.00 2.82
7977 10402 4.038763 CCAATCTTATCATGTGCAGCCAAT 59.961 41.667 0.00 0.00 0.00 3.16
7978 10403 3.382227 CCAATCTTATCATGTGCAGCCAA 59.618 43.478 0.00 0.00 0.00 4.52
7979 10404 2.953648 CCAATCTTATCATGTGCAGCCA 59.046 45.455 0.00 0.00 0.00 4.75
8035 10498 2.505819 GAGCCAAATGGACCTTCCTAGA 59.494 50.000 2.98 0.00 37.46 2.43
8043 10506 0.919710 ACCCTAGAGCCAAATGGACC 59.080 55.000 2.98 0.00 37.39 4.46
8069 10532 7.016268 AGGACAAAAAGATACTACAAGAGACCA 59.984 37.037 0.00 0.00 0.00 4.02
8198 10662 7.806014 TCGTTGACCATTTTGTAATTCTTAAGC 59.194 33.333 0.00 0.00 0.00 3.09
8199 10663 9.840427 ATCGTTGACCATTTTGTAATTCTTAAG 57.160 29.630 0.00 0.00 0.00 1.85
8200 10664 9.619316 CATCGTTGACCATTTTGTAATTCTTAA 57.381 29.630 0.00 0.00 0.00 1.85
8201 10665 8.788806 ACATCGTTGACCATTTTGTAATTCTTA 58.211 29.630 0.00 0.00 0.00 2.10
8202 10666 7.657336 ACATCGTTGACCATTTTGTAATTCTT 58.343 30.769 0.00 0.00 0.00 2.52
8203 10667 7.214467 ACATCGTTGACCATTTTGTAATTCT 57.786 32.000 0.00 0.00 0.00 2.40
8204 10668 6.526674 GGACATCGTTGACCATTTTGTAATTC 59.473 38.462 9.66 0.00 37.58 2.17
8205 10669 6.015856 TGGACATCGTTGACCATTTTGTAATT 60.016 34.615 12.69 0.00 41.75 1.40
8206 10670 5.475220 TGGACATCGTTGACCATTTTGTAAT 59.525 36.000 12.69 0.00 41.75 1.89
8207 10671 4.822350 TGGACATCGTTGACCATTTTGTAA 59.178 37.500 12.69 0.00 41.75 2.41
8208 10672 4.390264 TGGACATCGTTGACCATTTTGTA 58.610 39.130 12.69 0.00 41.75 2.41
8209 10673 3.218453 TGGACATCGTTGACCATTTTGT 58.782 40.909 12.69 0.00 41.75 2.83
8210 10674 3.913548 TGGACATCGTTGACCATTTTG 57.086 42.857 12.69 0.00 41.75 2.44
8211 10675 3.888930 ACTTGGACATCGTTGACCATTTT 59.111 39.130 16.51 3.84 45.12 1.82
8212 10676 3.486383 ACTTGGACATCGTTGACCATTT 58.514 40.909 16.51 5.94 45.12 2.32
8213 10677 3.140325 ACTTGGACATCGTTGACCATT 57.860 42.857 16.51 6.25 45.12 3.16
8214 10678 2.859165 ACTTGGACATCGTTGACCAT 57.141 45.000 16.51 2.54 45.12 3.55
8215 10679 2.631160 AACTTGGACATCGTTGACCA 57.369 45.000 12.69 12.69 44.32 4.02
8216 10680 3.982576 AAAACTTGGACATCGTTGACC 57.017 42.857 7.88 7.88 38.06 4.02
8244 10708 8.421249 TTCAACATCCATACTTCCTTCATTTT 57.579 30.769 0.00 0.00 0.00 1.82
8252 10716 8.571336 CAGGATAATTTCAACATCCATACTTCC 58.429 37.037 6.90 0.00 40.67 3.46
8253 10717 8.571336 CCAGGATAATTTCAACATCCATACTTC 58.429 37.037 6.90 0.00 40.67 3.01
8256 10720 8.463930 TTCCAGGATAATTTCAACATCCATAC 57.536 34.615 6.90 0.00 40.67 2.39
8274 10738 5.094387 ACTTAAGGATCTCACTTTCCAGGA 58.906 41.667 7.53 0.00 34.27 3.86
8278 10742 7.395617 AGGTAAACTTAAGGATCTCACTTTCC 58.604 38.462 7.53 0.90 0.00 3.13
8289 10753 8.434392 ACAATTCACAGTAGGTAAACTTAAGGA 58.566 33.333 7.53 0.00 0.00 3.36
8305 10769 8.344831 TGTAATTCTGAAACAGACAATTCACAG 58.655 33.333 0.74 0.00 40.46 3.66
8380 10845 6.816640 CACTCTCCAGGATATTTTTAACGTCA 59.183 38.462 0.00 0.00 0.00 4.35
8383 10848 7.265673 TCTCACTCTCCAGGATATTTTTAACG 58.734 38.462 0.00 0.00 0.00 3.18
8413 10879 6.480981 GCATGGATTCACAATAGGGAAATTTG 59.519 38.462 0.00 0.00 0.00 2.32
8416 10882 5.210430 TGCATGGATTCACAATAGGGAAAT 58.790 37.500 0.00 0.00 0.00 2.17
8476 10942 0.904649 TCTATGCTGTGGTCACCTGG 59.095 55.000 0.00 0.00 0.00 4.45
8487 10953 5.290400 CAGTACACACTCATGTTCTATGCTG 59.710 44.000 0.00 0.00 36.72 4.41
8492 10958 4.830600 TGACCAGTACACACTCATGTTCTA 59.169 41.667 0.00 0.00 36.72 2.10
8566 11032 8.606830 AGAGAAAACTGATTTGGTAGGACTATT 58.393 33.333 0.00 0.00 0.00 1.73
8665 11133 8.455682 TGGTAAACGGAATAAATGAATGAACTC 58.544 33.333 0.00 0.00 0.00 3.01
8715 11183 0.402121 GCCAGGAAGGTGAAGGTTCT 59.598 55.000 0.00 0.00 40.61 3.01
8717 11185 0.111253 CTGCCAGGAAGGTGAAGGTT 59.889 55.000 0.00 0.00 40.61 3.50
8764 11232 9.716507 CCTACAATTATGAAAACTAAACATCGG 57.283 33.333 0.00 0.00 0.00 4.18
8777 11245 5.588648 CCTTTTCGAGCCCTACAATTATGAA 59.411 40.000 0.00 0.00 0.00 2.57
8795 11263 3.157087 TGATCCTTGCTCAACCCTTTTC 58.843 45.455 0.00 0.00 0.00 2.29
8804 11272 3.146847 GCATGATGATGATCCTTGCTCA 58.853 45.455 0.00 0.00 35.41 4.26
8805 11273 3.189495 CAGCATGATGATGATCCTTGCTC 59.811 47.826 4.56 0.00 41.58 4.26
8806 11274 3.149981 CAGCATGATGATGATCCTTGCT 58.850 45.455 4.56 12.02 43.04 3.91
8843 11311 3.102972 CATCAGGGAGGAGTTTGAGAGA 58.897 50.000 0.00 0.00 0.00 3.10
8845 11313 3.190383 TCATCAGGGAGGAGTTTGAGA 57.810 47.619 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.