Multiple sequence alignment - TraesCS6A01G066600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G066600 chr6A 100.000 2708 0 0 1 2708 35558165 35560872 0.000000e+00 5001.0
1 TraesCS6A01G066600 chrUn 95.358 1271 54 3 458 1726 101248098 101246831 0.000000e+00 2015.0
2 TraesCS6A01G066600 chrUn 85.857 898 98 16 849 1726 101171903 101171015 0.000000e+00 928.0
3 TraesCS6A01G066600 chrUn 96.512 430 14 1 2046 2474 101162378 101161949 0.000000e+00 710.0
4 TraesCS6A01G066600 chrUn 88.839 448 32 9 6 451 101251420 101250989 3.970000e-148 534.0
5 TraesCS6A01G066600 chrUn 86.222 450 30 4 135 553 101172479 101172031 2.460000e-125 459.0
6 TraesCS6A01G066600 chrUn 89.177 231 24 1 562 791 101253187 101252957 1.230000e-73 287.0
7 TraesCS6A01G066600 chrUn 93.567 171 8 2 1884 2054 101163978 101163811 4.480000e-63 252.0
8 TraesCS6A01G066600 chrUn 89.865 148 15 0 580 727 101303100 101302953 9.900000e-45 191.0
9 TraesCS6A01G066600 chrUn 97.196 107 3 0 2602 2708 101066516 101066622 5.960000e-42 182.0
10 TraesCS6A01G066600 chrUn 96.262 107 4 0 2602 2708 101082100 101082206 2.770000e-40 176.0
11 TraesCS6A01G066600 chrUn 92.593 108 6 2 2487 2593 101160637 101160531 1.300000e-33 154.0
12 TraesCS6A01G066600 chrUn 91.566 83 7 0 1806 1888 101165389 101165307 6.130000e-22 115.0
13 TraesCS6A01G066600 chrUn 83.898 118 5 4 4 121 101172625 101172522 1.720000e-17 100.0
14 TraesCS6A01G066600 chrUn 97.436 39 1 0 861 899 101172007 101171969 1.740000e-07 67.6
15 TraesCS6A01G066600 chr6B 87.346 1628 147 23 136 1726 65150375 65151980 0.000000e+00 1810.0
16 TraesCS6A01G066600 chr6B 90.868 657 40 8 400 1049 65134900 65135543 0.000000e+00 863.0
17 TraesCS6A01G066600 chr6B 86.370 697 72 10 1040 1726 65136009 65136692 0.000000e+00 739.0
18 TraesCS6A01G066600 chr6B 83.514 461 60 12 1276 1724 65130937 65131393 1.500000e-112 416.0
19 TraesCS6A01G066600 chr6B 93.137 102 5 1 308 409 65133872 65133971 6.040000e-32 148.0
20 TraesCS6A01G066600 chr3D 94.186 86 5 0 2599 2684 519600928 519601013 6.080000e-27 132.0
21 TraesCS6A01G066600 chr3A 95.181 83 4 0 2602 2684 654512032 654512114 6.080000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G066600 chr6A 35558165 35560872 2707 False 5001.000000 5001 100.000000 1 2708 1 chr6A.!!$F1 2707
1 TraesCS6A01G066600 chrUn 101246831 101253187 6356 True 945.333333 2015 91.124667 6 1726 3 chrUn.!!$R4 1720
2 TraesCS6A01G066600 chrUn 101171015 101172625 1610 True 388.650000 928 88.353250 4 1726 4 chrUn.!!$R3 1722
3 TraesCS6A01G066600 chrUn 101160531 101165389 4858 True 307.750000 710 93.559500 1806 2593 4 chrUn.!!$R2 787
4 TraesCS6A01G066600 chr6B 65150375 65151980 1605 False 1810.000000 1810 87.346000 136 1726 1 chr6B.!!$F1 1590
5 TraesCS6A01G066600 chr6B 65130937 65136692 5755 False 541.500000 863 88.472250 308 1726 4 chr6B.!!$F2 1418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 1942 1.348064 ATGTTGAGACGGAGGACCAA 58.652 50.0 0.0 0.0 35.59 3.67 F
1494 8481 0.033366 CGTATGTGATCCCGATGCCA 59.967 55.0 0.0 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 8503 0.103755 TGACGCATCATCCTCAGAGC 59.896 55.0 0.0 0.0 0.0 4.09 R
2682 13752 0.526662 CGCGTCACCCTTCTAGTCTT 59.473 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 1793 3.882131 CCCCCAAGATGATTGTCGT 57.118 52.632 0.00 0.00 0.00 4.34
150 1942 1.348064 ATGTTGAGACGGAGGACCAA 58.652 50.000 0.00 0.00 35.59 3.67
317 2946 2.607038 GGCCTTTTTCGTTCTCGCAAAT 60.607 45.455 0.00 0.00 33.11 2.32
348 2977 8.986477 AACTTCCATTAACAACAATATCTTGC 57.014 30.769 0.00 0.00 35.69 4.01
369 2998 8.791675 TCTTGCTCAATGTAATGTTGTGATTTA 58.208 29.630 0.00 0.00 0.00 1.40
432 4030 6.024552 ACATTTCCAATTTGTATGCGAGTT 57.975 33.333 0.00 0.00 0.00 3.01
441 4039 7.971168 CCAATTTGTATGCGAGTTTTACCATAA 59.029 33.333 0.00 0.00 0.00 1.90
502 6986 4.141111 AGGCCTTCCCTACAAAAACTAACA 60.141 41.667 0.00 0.00 44.08 2.41
542 7028 2.038557 ACAATACGATACCATCCTGCCC 59.961 50.000 0.00 0.00 0.00 5.36
795 7292 2.027625 CGTCGCCAACTCCTTCCAC 61.028 63.158 0.00 0.00 0.00 4.02
1009 7506 3.770040 CCACGGAGATGGGCGACA 61.770 66.667 0.00 0.00 35.95 4.35
1010 7507 2.202797 CACGGAGATGGGCGACAG 60.203 66.667 0.00 0.00 0.00 3.51
1011 7508 2.680352 ACGGAGATGGGCGACAGT 60.680 61.111 0.00 0.00 0.00 3.55
1044 8016 1.149174 CACCTTGGGCATCGGCTAT 59.851 57.895 0.00 0.00 40.87 2.97
1131 8103 2.675056 GCACACCTGCGAGCTTCTG 61.675 63.158 0.00 0.00 32.44 3.02
1316 8294 2.504920 TCGAGACCGAGCAATGGAT 58.495 52.632 0.00 0.00 40.30 3.41
1494 8481 0.033366 CGTATGTGATCCCGATGCCA 59.967 55.000 0.00 0.00 0.00 4.92
1603 8599 4.565564 GTCCGACGCTACAAGTTTATGATT 59.434 41.667 0.00 0.00 0.00 2.57
1672 8668 0.248296 GAGCGACGTTGGTTTTTGCA 60.248 50.000 9.25 0.00 0.00 4.08
1741 8737 3.797353 GCCATCGGCCCCTCTTGA 61.797 66.667 0.00 0.00 44.06 3.02
1742 8738 3.125376 GCCATCGGCCCCTCTTGAT 62.125 63.158 0.00 0.00 44.06 2.57
1743 8739 1.228063 CCATCGGCCCCTCTTGATG 60.228 63.158 8.60 8.60 38.32 3.07
1744 8740 1.895707 CATCGGCCCCTCTTGATGC 60.896 63.158 0.00 0.00 32.68 3.91
1745 8741 2.074948 ATCGGCCCCTCTTGATGCT 61.075 57.895 0.00 0.00 0.00 3.79
1746 8742 2.335092 ATCGGCCCCTCTTGATGCTG 62.335 60.000 0.00 0.00 0.00 4.41
1747 8743 2.679716 GGCCCCTCTTGATGCTGT 59.320 61.111 0.00 0.00 0.00 4.40
1748 8744 1.915228 GGCCCCTCTTGATGCTGTA 59.085 57.895 0.00 0.00 0.00 2.74
1749 8745 0.475906 GGCCCCTCTTGATGCTGTAT 59.524 55.000 0.00 0.00 0.00 2.29
1750 8746 1.133668 GGCCCCTCTTGATGCTGTATT 60.134 52.381 0.00 0.00 0.00 1.89
1751 8747 1.952296 GCCCCTCTTGATGCTGTATTG 59.048 52.381 0.00 0.00 0.00 1.90
1752 8748 1.952296 CCCCTCTTGATGCTGTATTGC 59.048 52.381 0.00 0.00 0.00 3.56
1753 8749 2.422519 CCCCTCTTGATGCTGTATTGCT 60.423 50.000 0.00 0.00 0.00 3.91
1754 8750 2.617308 CCCTCTTGATGCTGTATTGCTG 59.383 50.000 0.00 0.00 0.00 4.41
1755 8751 3.276857 CCTCTTGATGCTGTATTGCTGT 58.723 45.455 0.00 0.00 0.00 4.40
1756 8752 3.693085 CCTCTTGATGCTGTATTGCTGTT 59.307 43.478 0.00 0.00 0.00 3.16
1757 8753 4.201891 CCTCTTGATGCTGTATTGCTGTTC 60.202 45.833 0.00 0.00 0.00 3.18
1758 8754 4.325972 TCTTGATGCTGTATTGCTGTTCA 58.674 39.130 0.00 0.00 0.00 3.18
1759 8755 4.945543 TCTTGATGCTGTATTGCTGTTCAT 59.054 37.500 0.00 0.00 0.00 2.57
1760 8756 4.888038 TGATGCTGTATTGCTGTTCATC 57.112 40.909 0.00 0.00 0.00 2.92
1761 8757 3.310501 TGATGCTGTATTGCTGTTCATCG 59.689 43.478 0.00 0.00 33.54 3.84
1762 8758 2.698803 TGCTGTATTGCTGTTCATCGT 58.301 42.857 0.00 0.00 0.00 3.73
1763 8759 2.672874 TGCTGTATTGCTGTTCATCGTC 59.327 45.455 0.00 0.00 0.00 4.20
1764 8760 2.030946 GCTGTATTGCTGTTCATCGTCC 59.969 50.000 0.00 0.00 0.00 4.79
1765 8761 2.267426 TGTATTGCTGTTCATCGTCCG 58.733 47.619 0.00 0.00 0.00 4.79
1766 8762 1.004927 GTATTGCTGTTCATCGTCCGC 60.005 52.381 0.00 0.00 0.00 5.54
1767 8763 1.369091 ATTGCTGTTCATCGTCCGCC 61.369 55.000 0.00 0.00 0.00 6.13
1768 8764 2.434185 GCTGTTCATCGTCCGCCA 60.434 61.111 0.00 0.00 0.00 5.69
1769 8765 2.456119 GCTGTTCATCGTCCGCCAG 61.456 63.158 0.00 0.00 0.00 4.85
1770 8766 2.434185 TGTTCATCGTCCGCCAGC 60.434 61.111 0.00 0.00 0.00 4.85
1771 8767 2.434185 GTTCATCGTCCGCCAGCA 60.434 61.111 0.00 0.00 0.00 4.41
1772 8768 2.125552 TTCATCGTCCGCCAGCAG 60.126 61.111 0.00 0.00 0.00 4.24
1773 8769 3.664025 TTCATCGTCCGCCAGCAGG 62.664 63.158 0.00 0.00 38.23 4.85
1778 8774 4.459089 GTCCGCCAGCAGGGAGTC 62.459 72.222 0.00 0.00 40.01 3.36
1780 8776 4.767255 CCGCCAGCAGGGAGTCAC 62.767 72.222 0.00 0.00 40.01 3.67
1781 8777 4.767255 CGCCAGCAGGGAGTCACC 62.767 72.222 0.00 0.00 40.01 4.02
1790 8786 2.592308 GGAGTCACCCCATGCTCC 59.408 66.667 0.00 0.00 41.42 4.70
1791 8787 2.187946 GAGTCACCCCATGCTCCG 59.812 66.667 0.00 0.00 0.00 4.63
1792 8788 4.101448 AGTCACCCCATGCTCCGC 62.101 66.667 0.00 0.00 0.00 5.54
1795 8791 4.864334 CACCCCATGCTCCGCCTC 62.864 72.222 0.00 0.00 0.00 4.70
1797 8793 2.844362 CCCCATGCTCCGCCTCTA 60.844 66.667 0.00 0.00 0.00 2.43
1798 8794 2.423446 CCCATGCTCCGCCTCTAC 59.577 66.667 0.00 0.00 0.00 2.59
1799 8795 2.434843 CCCATGCTCCGCCTCTACA 61.435 63.158 0.00 0.00 0.00 2.74
1800 8796 1.750930 CCATGCTCCGCCTCTACAT 59.249 57.895 0.00 0.00 0.00 2.29
1801 8797 0.320247 CCATGCTCCGCCTCTACATC 60.320 60.000 0.00 0.00 0.00 3.06
1802 8798 0.678395 CATGCTCCGCCTCTACATCT 59.322 55.000 0.00 0.00 0.00 2.90
1803 8799 0.965439 ATGCTCCGCCTCTACATCTC 59.035 55.000 0.00 0.00 0.00 2.75
1804 8800 0.106469 TGCTCCGCCTCTACATCTCT 60.106 55.000 0.00 0.00 0.00 3.10
1816 8812 3.821600 TCTACATCTCTATTCACGGCCTC 59.178 47.826 0.00 0.00 0.00 4.70
1823 8819 2.833151 TATTCACGGCCTCCACCCCT 62.833 60.000 0.00 0.00 0.00 4.79
1833 8829 4.047125 CCACCCCTTGCCGATGGT 62.047 66.667 0.00 0.00 0.00 3.55
1894 10223 4.035441 GTCTCCTAACTCCTAAGTACTGCG 59.965 50.000 0.00 0.00 33.48 5.18
1898 10227 0.324460 ACTCCTAAGTACTGCGGGCT 60.324 55.000 0.00 0.00 32.59 5.19
1899 10228 1.064166 ACTCCTAAGTACTGCGGGCTA 60.064 52.381 0.00 0.00 32.59 3.93
1909 10238 2.124736 GCGGGCTATCAAGTGGCA 60.125 61.111 0.00 0.00 35.74 4.92
1914 10243 0.107508 GGCTATCAAGTGGCAGCAGA 60.108 55.000 0.00 0.00 35.74 4.26
1934 10263 5.734503 GCAGATTAAAAAGCCTGTATCTGGC 60.735 44.000 0.00 9.13 46.61 4.85
1994 10323 2.104967 TCCCAGTCGTTTCGTGGATAT 58.895 47.619 0.00 0.00 32.60 1.63
1995 10324 3.289836 TCCCAGTCGTTTCGTGGATATA 58.710 45.455 0.00 0.00 32.60 0.86
2044 10373 5.844004 ACGATCTCCTGTATACAATGGTTC 58.156 41.667 7.06 4.78 0.00 3.62
2060 11830 6.429692 ACAATGGTTCAGTTGTGAATTCGATA 59.570 34.615 0.04 0.00 44.58 2.92
2108 11878 2.426024 TGTCCTGACTGCGACCTAATAC 59.574 50.000 0.00 0.00 0.00 1.89
2204 11974 5.801350 TCTGAAAAAGCGGACAATCTATG 57.199 39.130 0.00 0.00 0.00 2.23
2218 11988 8.028938 CGGACAATCTATGTTTTCTTGGAAAAT 58.971 33.333 8.38 0.00 44.12 1.82
2276 12046 6.817765 TTCTGAAAAAGCGGACAATCTATT 57.182 33.333 0.00 0.00 0.00 1.73
2476 12247 9.893634 TTACTCTATTTTCCCGTTCAAATATCA 57.106 29.630 0.00 0.00 0.00 2.15
2479 12250 9.669353 CTCTATTTTCCCGTTCAAATATCAATG 57.331 33.333 0.00 0.00 0.00 2.82
2480 12251 9.184523 TCTATTTTCCCGTTCAAATATCAATGT 57.815 29.630 0.00 0.00 0.00 2.71
2483 12254 7.931578 TTTCCCGTTCAAATATCAATGTACT 57.068 32.000 0.00 0.00 0.00 2.73
2484 12255 9.451002 TTTTCCCGTTCAAATATCAATGTACTA 57.549 29.630 0.00 0.00 0.00 1.82
2485 12256 9.621629 TTTCCCGTTCAAATATCAATGTACTAT 57.378 29.630 0.00 0.00 0.00 2.12
2574 13644 4.262635 CCATAGATGTAGCGGACCAATCTT 60.263 45.833 0.00 0.00 0.00 2.40
2580 13650 2.109425 AGCGGACCAATCTTTGTACC 57.891 50.000 0.00 0.00 0.00 3.34
2581 13651 1.349688 AGCGGACCAATCTTTGTACCA 59.650 47.619 0.00 0.00 0.00 3.25
2584 13654 3.004944 GCGGACCAATCTTTGTACCAAAA 59.995 43.478 0.00 0.00 0.00 2.44
2586 13656 5.106078 GCGGACCAATCTTTGTACCAAAATA 60.106 40.000 0.00 0.00 0.00 1.40
2587 13657 6.405397 GCGGACCAATCTTTGTACCAAAATAT 60.405 38.462 0.00 0.00 0.00 1.28
2593 13663 7.278424 CCAATCTTTGTACCAAAATATTGCCAG 59.722 37.037 13.61 3.89 34.63 4.85
2594 13664 6.909550 TCTTTGTACCAAAATATTGCCAGT 57.090 33.333 0.00 0.00 35.10 4.00
2595 13665 8.588290 ATCTTTGTACCAAAATATTGCCAGTA 57.412 30.769 0.00 0.00 35.10 2.74
2596 13666 8.410673 TCTTTGTACCAAAATATTGCCAGTAA 57.589 30.769 0.00 0.00 35.10 2.24
2597 13667 8.301002 TCTTTGTACCAAAATATTGCCAGTAAC 58.699 33.333 0.00 0.00 35.10 2.50
2598 13668 7.526142 TTGTACCAAAATATTGCCAGTAACA 57.474 32.000 0.00 0.00 35.10 2.41
2599 13669 7.526142 TGTACCAAAATATTGCCAGTAACAA 57.474 32.000 0.00 0.00 35.10 2.83
2600 13670 7.371936 TGTACCAAAATATTGCCAGTAACAAC 58.628 34.615 0.00 0.00 35.10 3.32
2601 13671 6.412362 ACCAAAATATTGCCAGTAACAACA 57.588 33.333 0.00 0.00 35.10 3.33
2602 13672 6.821388 ACCAAAATATTGCCAGTAACAACAA 58.179 32.000 0.00 0.00 35.10 2.83
2603 13673 6.928492 ACCAAAATATTGCCAGTAACAACAAG 59.072 34.615 0.00 0.00 35.10 3.16
2604 13674 7.151308 CCAAAATATTGCCAGTAACAACAAGA 58.849 34.615 0.00 0.00 35.10 3.02
2605 13675 7.818930 CCAAAATATTGCCAGTAACAACAAGAT 59.181 33.333 0.00 0.00 35.10 2.40
2606 13676 8.649841 CAAAATATTGCCAGTAACAACAAGATG 58.350 33.333 0.00 0.00 0.00 2.90
2607 13677 7.466746 AATATTGCCAGTAACAACAAGATGT 57.533 32.000 0.00 0.00 34.24 3.06
2608 13678 5.789643 ATTGCCAGTAACAACAAGATGTT 57.210 34.783 1.42 1.42 45.14 2.71
2617 13687 2.254546 AACAAGATGTTGAGGTCGCA 57.745 45.000 9.96 0.00 39.45 5.10
2618 13688 2.479566 ACAAGATGTTGAGGTCGCAT 57.520 45.000 9.96 0.00 37.10 4.73
2619 13689 2.783135 ACAAGATGTTGAGGTCGCATT 58.217 42.857 9.96 0.00 37.10 3.56
2620 13690 3.937814 ACAAGATGTTGAGGTCGCATTA 58.062 40.909 9.96 0.00 37.10 1.90
2621 13691 3.935203 ACAAGATGTTGAGGTCGCATTAG 59.065 43.478 9.96 0.00 37.10 1.73
2622 13692 4.183865 CAAGATGTTGAGGTCGCATTAGA 58.816 43.478 0.00 0.00 35.46 2.10
2623 13693 4.471904 AGATGTTGAGGTCGCATTAGAA 57.528 40.909 0.00 0.00 0.00 2.10
2624 13694 4.184629 AGATGTTGAGGTCGCATTAGAAC 58.815 43.478 0.00 0.00 0.00 3.01
2625 13695 3.394674 TGTTGAGGTCGCATTAGAACA 57.605 42.857 0.00 0.00 0.00 3.18
2626 13696 3.734463 TGTTGAGGTCGCATTAGAACAA 58.266 40.909 0.00 0.00 0.00 2.83
2627 13697 4.130857 TGTTGAGGTCGCATTAGAACAAA 58.869 39.130 0.00 0.00 0.00 2.83
2628 13698 4.576873 TGTTGAGGTCGCATTAGAACAAAA 59.423 37.500 0.00 0.00 0.00 2.44
2629 13699 4.742438 TGAGGTCGCATTAGAACAAAAC 57.258 40.909 0.00 0.00 0.00 2.43
2630 13700 3.500680 TGAGGTCGCATTAGAACAAAACC 59.499 43.478 0.00 0.00 0.00 3.27
2631 13701 3.482436 AGGTCGCATTAGAACAAAACCA 58.518 40.909 0.00 0.00 0.00 3.67
2632 13702 3.886505 AGGTCGCATTAGAACAAAACCAA 59.113 39.130 0.00 0.00 0.00 3.67
2633 13703 4.339814 AGGTCGCATTAGAACAAAACCAAA 59.660 37.500 0.00 0.00 0.00 3.28
2634 13704 5.044558 GGTCGCATTAGAACAAAACCAAAA 58.955 37.500 0.00 0.00 0.00 2.44
2635 13705 5.694458 GGTCGCATTAGAACAAAACCAAAAT 59.306 36.000 0.00 0.00 0.00 1.82
2636 13706 6.346518 GGTCGCATTAGAACAAAACCAAAATG 60.347 38.462 0.00 0.00 0.00 2.32
2637 13707 5.176590 TCGCATTAGAACAAAACCAAAATGC 59.823 36.000 6.98 6.98 42.52 3.56
2638 13708 5.050499 CGCATTAGAACAAAACCAAAATGCA 60.050 36.000 15.04 0.00 44.87 3.96
2639 13709 6.135400 GCATTAGAACAAAACCAAAATGCAC 58.865 36.000 11.15 0.00 44.33 4.57
2640 13710 6.238320 GCATTAGAACAAAACCAAAATGCACA 60.238 34.615 11.15 0.00 44.33 4.57
2641 13711 7.678218 GCATTAGAACAAAACCAAAATGCACAA 60.678 33.333 11.15 0.00 44.33 3.33
2642 13712 5.799681 AGAACAAAACCAAAATGCACAAG 57.200 34.783 0.00 0.00 0.00 3.16
2643 13713 4.094739 AGAACAAAACCAAAATGCACAAGC 59.905 37.500 0.00 0.00 42.57 4.01
2644 13714 2.682352 ACAAAACCAAAATGCACAAGCC 59.318 40.909 0.00 0.00 41.13 4.35
2645 13715 2.944349 CAAAACCAAAATGCACAAGCCT 59.056 40.909 0.00 0.00 41.13 4.58
2646 13716 4.125703 CAAAACCAAAATGCACAAGCCTA 58.874 39.130 0.00 0.00 41.13 3.93
2647 13717 4.414337 AAACCAAAATGCACAAGCCTAA 57.586 36.364 0.00 0.00 41.13 2.69
2648 13718 3.665745 ACCAAAATGCACAAGCCTAAG 57.334 42.857 0.00 0.00 41.13 2.18
2649 13719 3.230134 ACCAAAATGCACAAGCCTAAGA 58.770 40.909 0.00 0.00 41.13 2.10
2650 13720 3.640967 ACCAAAATGCACAAGCCTAAGAA 59.359 39.130 0.00 0.00 41.13 2.52
2651 13721 4.284234 ACCAAAATGCACAAGCCTAAGAAT 59.716 37.500 0.00 0.00 41.13 2.40
2652 13722 5.480073 ACCAAAATGCACAAGCCTAAGAATA 59.520 36.000 0.00 0.00 41.13 1.75
2653 13723 6.038356 CCAAAATGCACAAGCCTAAGAATAG 58.962 40.000 0.00 0.00 41.13 1.73
2654 13724 6.127647 CCAAAATGCACAAGCCTAAGAATAGA 60.128 38.462 0.00 0.00 41.13 1.98
2655 13725 7.315142 CAAAATGCACAAGCCTAAGAATAGAA 58.685 34.615 0.00 0.00 41.13 2.10
2656 13726 6.442513 AATGCACAAGCCTAAGAATAGAAC 57.557 37.500 0.00 0.00 41.13 3.01
2657 13727 4.261801 TGCACAAGCCTAAGAATAGAACC 58.738 43.478 0.00 0.00 41.13 3.62
2658 13728 4.261801 GCACAAGCCTAAGAATAGAACCA 58.738 43.478 0.00 0.00 33.58 3.67
2659 13729 4.884164 GCACAAGCCTAAGAATAGAACCAT 59.116 41.667 0.00 0.00 33.58 3.55
2660 13730 5.358160 GCACAAGCCTAAGAATAGAACCATT 59.642 40.000 0.00 0.00 33.58 3.16
2661 13731 6.127619 GCACAAGCCTAAGAATAGAACCATTT 60.128 38.462 0.00 0.00 33.58 2.32
2662 13732 7.253422 CACAAGCCTAAGAATAGAACCATTTG 58.747 38.462 0.00 0.00 0.00 2.32
2663 13733 6.948309 ACAAGCCTAAGAATAGAACCATTTGT 59.052 34.615 0.00 0.00 0.00 2.83
2664 13734 8.107095 ACAAGCCTAAGAATAGAACCATTTGTA 58.893 33.333 0.00 0.00 0.00 2.41
2665 13735 8.398665 CAAGCCTAAGAATAGAACCATTTGTAC 58.601 37.037 0.00 0.00 0.00 2.90
2666 13736 7.630082 AGCCTAAGAATAGAACCATTTGTACA 58.370 34.615 0.00 0.00 0.00 2.90
2667 13737 7.553044 AGCCTAAGAATAGAACCATTTGTACAC 59.447 37.037 0.00 0.00 0.00 2.90
2668 13738 7.335924 GCCTAAGAATAGAACCATTTGTACACA 59.664 37.037 0.00 0.00 0.00 3.72
2669 13739 8.665685 CCTAAGAATAGAACCATTTGTACACAC 58.334 37.037 0.00 0.00 0.00 3.82
2670 13740 7.448748 AAGAATAGAACCATTTGTACACACC 57.551 36.000 0.00 0.00 0.00 4.16
2671 13741 6.539173 AGAATAGAACCATTTGTACACACCA 58.461 36.000 0.00 0.00 0.00 4.17
2672 13742 7.175104 AGAATAGAACCATTTGTACACACCAT 58.825 34.615 0.00 0.00 0.00 3.55
2673 13743 7.336931 AGAATAGAACCATTTGTACACACCATC 59.663 37.037 0.00 0.00 0.00 3.51
2674 13744 4.985538 AGAACCATTTGTACACACCATCT 58.014 39.130 0.00 0.00 0.00 2.90
2675 13745 5.003804 AGAACCATTTGTACACACCATCTC 58.996 41.667 0.00 0.00 0.00 2.75
2676 13746 4.640771 ACCATTTGTACACACCATCTCT 57.359 40.909 0.00 0.00 0.00 3.10
2677 13747 4.579869 ACCATTTGTACACACCATCTCTC 58.420 43.478 0.00 0.00 0.00 3.20
2678 13748 4.041567 ACCATTTGTACACACCATCTCTCA 59.958 41.667 0.00 0.00 0.00 3.27
2679 13749 5.003160 CCATTTGTACACACCATCTCTCAA 58.997 41.667 0.00 0.00 0.00 3.02
2680 13750 5.473162 CCATTTGTACACACCATCTCTCAAA 59.527 40.000 0.00 0.00 0.00 2.69
2681 13751 6.151648 CCATTTGTACACACCATCTCTCAAAT 59.848 38.462 0.00 0.00 35.56 2.32
2682 13752 7.336679 CCATTTGTACACACCATCTCTCAAATA 59.663 37.037 0.00 0.00 34.16 1.40
2683 13753 8.729756 CATTTGTACACACCATCTCTCAAATAA 58.270 33.333 0.00 0.00 34.16 1.40
2684 13754 7.905604 TTGTACACACCATCTCTCAAATAAG 57.094 36.000 0.00 0.00 0.00 1.73
2685 13755 7.239763 TGTACACACCATCTCTCAAATAAGA 57.760 36.000 0.00 0.00 0.00 2.10
2686 13756 7.097192 TGTACACACCATCTCTCAAATAAGAC 58.903 38.462 0.00 0.00 0.00 3.01
2687 13757 6.365970 ACACACCATCTCTCAAATAAGACT 57.634 37.500 0.00 0.00 0.00 3.24
2688 13758 7.482169 ACACACCATCTCTCAAATAAGACTA 57.518 36.000 0.00 0.00 0.00 2.59
2689 13759 7.551585 ACACACCATCTCTCAAATAAGACTAG 58.448 38.462 0.00 0.00 0.00 2.57
2690 13760 7.397476 ACACACCATCTCTCAAATAAGACTAGA 59.603 37.037 0.00 0.00 0.00 2.43
2691 13761 8.253810 CACACCATCTCTCAAATAAGACTAGAA 58.746 37.037 0.00 0.00 0.00 2.10
2692 13762 8.474025 ACACCATCTCTCAAATAAGACTAGAAG 58.526 37.037 0.00 0.00 0.00 2.85
2693 13763 7.925483 CACCATCTCTCAAATAAGACTAGAAGG 59.075 40.741 0.00 0.00 0.00 3.46
2694 13764 7.070571 ACCATCTCTCAAATAAGACTAGAAGGG 59.929 40.741 0.00 0.00 0.00 3.95
2695 13765 7.070571 CCATCTCTCAAATAAGACTAGAAGGGT 59.929 40.741 0.00 0.00 0.00 4.34
2696 13766 7.411486 TCTCTCAAATAAGACTAGAAGGGTG 57.589 40.000 0.00 0.00 0.00 4.61
2697 13767 7.182760 TCTCTCAAATAAGACTAGAAGGGTGA 58.817 38.462 0.00 0.00 0.00 4.02
2698 13768 7.122948 TCTCTCAAATAAGACTAGAAGGGTGAC 59.877 40.741 0.00 0.00 0.00 3.67
2699 13769 5.962433 TCAAATAAGACTAGAAGGGTGACG 58.038 41.667 0.00 0.00 0.00 4.35
2700 13770 4.388378 AATAAGACTAGAAGGGTGACGC 57.612 45.455 0.00 0.00 0.00 5.19
2701 13771 0.526662 AAGACTAGAAGGGTGACGCG 59.473 55.000 3.53 3.53 0.00 6.01
2702 13772 1.516603 GACTAGAAGGGTGACGCGC 60.517 63.158 5.73 0.00 0.00 6.86
2703 13773 2.579787 CTAGAAGGGTGACGCGCG 60.580 66.667 30.96 30.96 34.93 6.86
2704 13774 4.789075 TAGAAGGGTGACGCGCGC 62.789 66.667 32.58 23.91 34.93 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
432 4030 8.808092 CAACCTGGAAAGGTATTTTATGGTAAA 58.192 33.333 0.00 0.00 42.20 2.01
462 6944 2.507484 GCCTACAACCCCGTTAGTTTT 58.493 47.619 0.00 0.00 0.00 2.43
491 6974 7.651704 CCAAATCTACAACCCTGTTAGTTTTTG 59.348 37.037 0.00 0.00 36.96 2.44
498 6982 3.658705 ACCCCAAATCTACAACCCTGTTA 59.341 43.478 0.00 0.00 36.96 2.41
502 6986 3.261962 TGTACCCCAAATCTACAACCCT 58.738 45.455 0.00 0.00 0.00 4.34
713 7210 2.430610 GCAGGGTCGGAGATGAGCT 61.431 63.158 0.00 0.00 40.67 4.09
1064 8036 3.628646 ATGAGGCGGACCACCTTGC 62.629 63.158 1.65 0.00 37.77 4.01
1164 8136 1.001181 GCAATTGGTGGTGACTGCATT 59.999 47.619 7.72 0.00 0.00 3.56
1231 8203 6.653989 ACAAGCTGTAAAGGAAGTATAGCAT 58.346 36.000 0.00 0.00 37.95 3.79
1236 8208 3.933332 GCGACAAGCTGTAAAGGAAGTAT 59.067 43.478 0.00 0.00 44.04 2.12
1266 8244 2.040606 ACATAGTCCCCGCCCACT 59.959 61.111 0.00 0.00 0.00 4.00
1316 8294 1.139498 TGGGGCTTTGATGGACCTCA 61.139 55.000 0.00 0.00 31.26 3.86
1494 8481 1.389555 TCACTAGATCGACGGCATGT 58.610 50.000 0.00 0.00 0.00 3.21
1516 8503 0.103755 TGACGCATCATCCTCAGAGC 59.896 55.000 0.00 0.00 0.00 4.09
1603 8599 1.140652 TGTGCATATCCCATTGAGCGA 59.859 47.619 0.00 0.00 0.00 4.93
1672 8668 6.260050 CGTATATAACATTCCAAGTGCAGGTT 59.740 38.462 0.00 0.00 0.00 3.50
1726 8722 1.895707 GCATCAAGAGGGGCCGATG 60.896 63.158 12.41 12.41 38.61 3.84
1727 8723 2.074948 AGCATCAAGAGGGGCCGAT 61.075 57.895 0.00 0.00 0.00 4.18
1728 8724 2.688666 AGCATCAAGAGGGGCCGA 60.689 61.111 0.00 0.00 0.00 5.54
1729 8725 1.971505 TACAGCATCAAGAGGGGCCG 61.972 60.000 0.00 0.00 0.00 6.13
1730 8726 0.475906 ATACAGCATCAAGAGGGGCC 59.524 55.000 0.00 0.00 0.00 5.80
1731 8727 1.952296 CAATACAGCATCAAGAGGGGC 59.048 52.381 0.00 0.00 0.00 5.80
1732 8728 1.952296 GCAATACAGCATCAAGAGGGG 59.048 52.381 0.00 0.00 0.00 4.79
1733 8729 2.617308 CAGCAATACAGCATCAAGAGGG 59.383 50.000 0.00 0.00 36.85 4.30
1734 8730 3.276857 ACAGCAATACAGCATCAAGAGG 58.723 45.455 0.00 0.00 36.85 3.69
1735 8731 4.393990 TGAACAGCAATACAGCATCAAGAG 59.606 41.667 0.00 0.00 36.85 2.85
1736 8732 4.325972 TGAACAGCAATACAGCATCAAGA 58.674 39.130 0.00 0.00 36.85 3.02
1737 8733 4.690184 TGAACAGCAATACAGCATCAAG 57.310 40.909 0.00 0.00 36.85 3.02
1738 8734 4.201841 CGATGAACAGCAATACAGCATCAA 60.202 41.667 0.00 0.00 36.85 2.57
1739 8735 3.310501 CGATGAACAGCAATACAGCATCA 59.689 43.478 0.00 0.00 36.85 3.07
1740 8736 3.310774 ACGATGAACAGCAATACAGCATC 59.689 43.478 0.00 0.00 36.85 3.91
1741 8737 3.273434 ACGATGAACAGCAATACAGCAT 58.727 40.909 0.00 0.00 36.85 3.79
1742 8738 2.672874 GACGATGAACAGCAATACAGCA 59.327 45.455 0.00 0.00 36.85 4.41
1743 8739 2.030946 GGACGATGAACAGCAATACAGC 59.969 50.000 0.00 0.00 0.00 4.40
1744 8740 2.282555 CGGACGATGAACAGCAATACAG 59.717 50.000 0.00 0.00 0.00 2.74
1745 8741 2.267426 CGGACGATGAACAGCAATACA 58.733 47.619 0.00 0.00 0.00 2.29
1746 8742 1.004927 GCGGACGATGAACAGCAATAC 60.005 52.381 0.00 0.00 0.00 1.89
1747 8743 1.286501 GCGGACGATGAACAGCAATA 58.713 50.000 0.00 0.00 0.00 1.90
1748 8744 1.369091 GGCGGACGATGAACAGCAAT 61.369 55.000 0.00 0.00 0.00 3.56
1749 8745 2.032634 GGCGGACGATGAACAGCAA 61.033 57.895 0.00 0.00 0.00 3.91
1750 8746 2.434185 GGCGGACGATGAACAGCA 60.434 61.111 0.00 0.00 0.00 4.41
1751 8747 2.434185 TGGCGGACGATGAACAGC 60.434 61.111 0.00 0.00 0.00 4.40
1752 8748 2.456119 GCTGGCGGACGATGAACAG 61.456 63.158 0.00 0.00 0.00 3.16
1753 8749 2.434185 GCTGGCGGACGATGAACA 60.434 61.111 0.00 0.00 0.00 3.18
1754 8750 2.434185 TGCTGGCGGACGATGAAC 60.434 61.111 0.00 0.00 0.00 3.18
1755 8751 2.125552 CTGCTGGCGGACGATGAA 60.126 61.111 0.00 0.00 0.00 2.57
1756 8752 4.147449 CCTGCTGGCGGACGATGA 62.147 66.667 0.00 0.00 0.00 2.92
1761 8757 4.459089 GACTCCCTGCTGGCGGAC 62.459 72.222 3.63 0.00 0.00 4.79
1763 8759 4.767255 GTGACTCCCTGCTGGCGG 62.767 72.222 3.63 1.49 0.00 6.13
1764 8760 4.767255 GGTGACTCCCTGCTGGCG 62.767 72.222 3.63 0.00 0.00 5.69
1773 8769 2.592308 GGAGCATGGGGTGACTCC 59.408 66.667 0.00 0.00 40.99 3.85
1774 8770 2.187946 CGGAGCATGGGGTGACTC 59.812 66.667 0.00 0.00 33.18 3.36
1787 8783 4.075682 TGAATAGAGATGTAGAGGCGGAG 58.924 47.826 0.00 0.00 0.00 4.63
1788 8784 3.821600 GTGAATAGAGATGTAGAGGCGGA 59.178 47.826 0.00 0.00 0.00 5.54
1789 8785 3.365465 CGTGAATAGAGATGTAGAGGCGG 60.365 52.174 0.00 0.00 0.00 6.13
1790 8786 3.365465 CCGTGAATAGAGATGTAGAGGCG 60.365 52.174 0.00 0.00 0.00 5.52
1791 8787 3.612955 GCCGTGAATAGAGATGTAGAGGC 60.613 52.174 0.00 0.00 0.00 4.70
1792 8788 3.057174 GGCCGTGAATAGAGATGTAGAGG 60.057 52.174 0.00 0.00 0.00 3.69
1793 8789 3.823873 AGGCCGTGAATAGAGATGTAGAG 59.176 47.826 0.00 0.00 0.00 2.43
1794 8790 3.821600 GAGGCCGTGAATAGAGATGTAGA 59.178 47.826 0.00 0.00 0.00 2.59
1795 8791 3.057174 GGAGGCCGTGAATAGAGATGTAG 60.057 52.174 0.00 0.00 0.00 2.74
1796 8792 2.891580 GGAGGCCGTGAATAGAGATGTA 59.108 50.000 0.00 0.00 0.00 2.29
1797 8793 1.689273 GGAGGCCGTGAATAGAGATGT 59.311 52.381 0.00 0.00 0.00 3.06
1798 8794 1.688735 TGGAGGCCGTGAATAGAGATG 59.311 52.381 0.00 0.00 0.00 2.90
1799 8795 1.689273 GTGGAGGCCGTGAATAGAGAT 59.311 52.381 0.00 0.00 0.00 2.75
1800 8796 1.112113 GTGGAGGCCGTGAATAGAGA 58.888 55.000 0.00 0.00 0.00 3.10
1801 8797 0.105039 GGTGGAGGCCGTGAATAGAG 59.895 60.000 0.00 0.00 0.00 2.43
1802 8798 1.335132 GGGTGGAGGCCGTGAATAGA 61.335 60.000 0.00 0.00 0.00 1.98
1803 8799 1.146263 GGGTGGAGGCCGTGAATAG 59.854 63.158 0.00 0.00 0.00 1.73
1804 8800 2.372074 GGGGTGGAGGCCGTGAATA 61.372 63.158 0.00 0.00 0.00 1.75
1816 8812 3.995506 GACCATCGGCAAGGGGTGG 62.996 68.421 0.00 0.00 32.77 4.61
1833 8829 1.532078 TCACGGTGGTAGTGGCAGA 60.532 57.895 8.50 0.00 39.86 4.26
1863 8859 2.755655 AGGAGTTAGGAGACACGATGTG 59.244 50.000 0.00 0.00 39.75 3.21
1864 8860 3.088789 AGGAGTTAGGAGACACGATGT 57.911 47.619 0.00 0.00 0.00 3.06
1869 8865 5.163632 GCAGTACTTAGGAGTTAGGAGACAC 60.164 48.000 0.00 0.00 37.33 3.67
1894 10223 1.077501 TGCTGCCACTTGATAGCCC 60.078 57.895 0.00 0.00 35.36 5.19
1898 10227 6.625740 GCTTTTTAATCTGCTGCCACTTGATA 60.626 38.462 0.00 0.00 0.00 2.15
1899 10228 5.717119 CTTTTTAATCTGCTGCCACTTGAT 58.283 37.500 0.00 0.00 0.00 2.57
1909 10238 5.591877 CCAGATACAGGCTTTTTAATCTGCT 59.408 40.000 12.43 0.00 39.19 4.24
1934 10263 8.600625 TGAGATAAATAAAGATGAAACCGTTCG 58.399 33.333 0.00 0.00 36.46 3.95
2001 10330 2.443958 TGGACACAACCAAACCATGA 57.556 45.000 0.00 0.00 36.96 3.07
2014 10343 3.802948 ATACAGGAGATCGTTGGACAC 57.197 47.619 0.00 0.00 0.00 3.67
2044 10373 5.807520 AGCACTACTATCGAATTCACAACTG 59.192 40.000 6.22 0.00 0.00 3.16
2060 11830 3.600388 AGCGCTTGAATTTAGCACTACT 58.400 40.909 2.64 3.31 38.55 2.57
2178 11948 4.394300 AGATTGTCCGCTTTTTCAGATCTG 59.606 41.667 17.07 17.07 0.00 2.90
2204 11974 7.378181 TGGAGCAGATTATTTTCCAAGAAAAC 58.622 34.615 4.73 0.00 35.13 2.43
2218 11988 3.776969 ACTCAAGGTGATGGAGCAGATTA 59.223 43.478 0.00 0.00 31.88 1.75
2276 12046 8.954950 TTCATTTAAGCAATTCCTGACAAAAA 57.045 26.923 0.00 0.00 0.00 1.94
2285 12055 7.122799 AGGTAACCTCTTCATTTAAGCAATTCC 59.877 37.037 0.00 0.00 33.61 3.01
2441 12212 9.813446 AACGGGAAAATAGAGTAATAACTGTAG 57.187 33.333 0.00 0.00 35.17 2.74
2539 13609 8.683615 CCGCTACATCTATGGTCATAAACTATA 58.316 37.037 0.00 0.00 30.71 1.31
2550 13620 2.082140 TGGTCCGCTACATCTATGGT 57.918 50.000 0.00 0.00 0.00 3.55
2555 13625 3.055094 ACAAAGATTGGTCCGCTACATCT 60.055 43.478 0.00 0.00 34.12 2.90
2580 13650 8.649841 CATCTTGTTGTTACTGGCAATATTTTG 58.350 33.333 0.00 0.00 35.85 2.44
2581 13651 8.367156 ACATCTTGTTGTTACTGGCAATATTTT 58.633 29.630 0.00 0.00 0.00 1.82
2584 13654 7.466746 AACATCTTGTTGTTACTGGCAATAT 57.533 32.000 0.00 0.00 39.45 1.28
2586 13656 5.789643 AACATCTTGTTGTTACTGGCAAT 57.210 34.783 0.00 0.00 39.45 3.56
2598 13668 2.254546 TGCGACCTCAACATCTTGTT 57.745 45.000 0.00 0.00 42.08 2.83
2599 13669 2.479566 ATGCGACCTCAACATCTTGT 57.520 45.000 0.00 0.00 0.00 3.16
2600 13670 4.183865 TCTAATGCGACCTCAACATCTTG 58.816 43.478 0.00 0.00 0.00 3.02
2601 13671 4.471904 TCTAATGCGACCTCAACATCTT 57.528 40.909 0.00 0.00 0.00 2.40
2602 13672 4.184629 GTTCTAATGCGACCTCAACATCT 58.815 43.478 0.00 0.00 0.00 2.90
2603 13673 3.932710 TGTTCTAATGCGACCTCAACATC 59.067 43.478 0.00 0.00 0.00 3.06
2604 13674 3.937814 TGTTCTAATGCGACCTCAACAT 58.062 40.909 0.00 0.00 0.00 2.71
2605 13675 3.394674 TGTTCTAATGCGACCTCAACA 57.605 42.857 0.00 0.00 0.00 3.33
2606 13676 4.742438 TTTGTTCTAATGCGACCTCAAC 57.258 40.909 0.00 0.00 0.00 3.18
2607 13677 4.023536 GGTTTTGTTCTAATGCGACCTCAA 60.024 41.667 0.00 0.00 0.00 3.02
2608 13678 3.500680 GGTTTTGTTCTAATGCGACCTCA 59.499 43.478 0.00 0.00 0.00 3.86
2609 13679 3.500680 TGGTTTTGTTCTAATGCGACCTC 59.499 43.478 0.00 0.00 0.00 3.85
2610 13680 3.482436 TGGTTTTGTTCTAATGCGACCT 58.518 40.909 0.00 0.00 0.00 3.85
2611 13681 3.907894 TGGTTTTGTTCTAATGCGACC 57.092 42.857 0.00 0.00 0.00 4.79
2612 13682 6.580476 CATTTTGGTTTTGTTCTAATGCGAC 58.420 36.000 0.00 0.00 0.00 5.19
2613 13683 5.176590 GCATTTTGGTTTTGTTCTAATGCGA 59.823 36.000 0.00 0.00 37.64 5.10
2614 13684 5.050499 TGCATTTTGGTTTTGTTCTAATGCG 60.050 36.000 0.00 0.00 45.56 4.73
2615 13685 6.135400 GTGCATTTTGGTTTTGTTCTAATGC 58.865 36.000 0.00 0.00 43.89 3.56
2616 13686 7.244166 TGTGCATTTTGGTTTTGTTCTAATG 57.756 32.000 0.00 0.00 0.00 1.90
2617 13687 7.467131 GCTTGTGCATTTTGGTTTTGTTCTAAT 60.467 33.333 0.00 0.00 39.41 1.73
2618 13688 6.183360 GCTTGTGCATTTTGGTTTTGTTCTAA 60.183 34.615 0.00 0.00 39.41 2.10
2619 13689 5.293079 GCTTGTGCATTTTGGTTTTGTTCTA 59.707 36.000 0.00 0.00 39.41 2.10
2620 13690 4.094739 GCTTGTGCATTTTGGTTTTGTTCT 59.905 37.500 0.00 0.00 39.41 3.01
2621 13691 4.341935 GCTTGTGCATTTTGGTTTTGTTC 58.658 39.130 0.00 0.00 39.41 3.18
2622 13692 3.128415 GGCTTGTGCATTTTGGTTTTGTT 59.872 39.130 0.00 0.00 41.91 2.83
2623 13693 2.682352 GGCTTGTGCATTTTGGTTTTGT 59.318 40.909 0.00 0.00 41.91 2.83
2624 13694 2.944349 AGGCTTGTGCATTTTGGTTTTG 59.056 40.909 0.00 0.00 41.91 2.44
2625 13695 3.280197 AGGCTTGTGCATTTTGGTTTT 57.720 38.095 0.00 0.00 41.91 2.43
2626 13696 4.100808 TCTTAGGCTTGTGCATTTTGGTTT 59.899 37.500 0.00 0.00 41.91 3.27
2627 13697 3.640967 TCTTAGGCTTGTGCATTTTGGTT 59.359 39.130 0.00 0.00 41.91 3.67
2628 13698 3.230134 TCTTAGGCTTGTGCATTTTGGT 58.770 40.909 0.00 0.00 41.91 3.67
2629 13699 3.940209 TCTTAGGCTTGTGCATTTTGG 57.060 42.857 0.00 0.00 41.91 3.28
2630 13700 6.855836 TCTATTCTTAGGCTTGTGCATTTTG 58.144 36.000 0.00 0.00 41.91 2.44
2631 13701 7.315890 GTTCTATTCTTAGGCTTGTGCATTTT 58.684 34.615 0.00 0.00 41.91 1.82
2632 13702 6.127619 GGTTCTATTCTTAGGCTTGTGCATTT 60.128 38.462 0.00 0.00 41.91 2.32
2633 13703 5.358160 GGTTCTATTCTTAGGCTTGTGCATT 59.642 40.000 0.00 0.00 41.91 3.56
2634 13704 4.884164 GGTTCTATTCTTAGGCTTGTGCAT 59.116 41.667 0.00 0.00 41.91 3.96
2635 13705 4.261801 GGTTCTATTCTTAGGCTTGTGCA 58.738 43.478 0.00 0.00 41.91 4.57
2636 13706 4.261801 TGGTTCTATTCTTAGGCTTGTGC 58.738 43.478 0.00 0.00 38.76 4.57
2637 13707 7.094205 ACAAATGGTTCTATTCTTAGGCTTGTG 60.094 37.037 0.00 0.00 0.00 3.33
2638 13708 6.948309 ACAAATGGTTCTATTCTTAGGCTTGT 59.052 34.615 0.00 0.00 0.00 3.16
2639 13709 7.396540 ACAAATGGTTCTATTCTTAGGCTTG 57.603 36.000 0.00 0.00 0.00 4.01
2640 13710 8.107095 TGTACAAATGGTTCTATTCTTAGGCTT 58.893 33.333 0.00 0.00 0.00 4.35
2641 13711 7.553044 GTGTACAAATGGTTCTATTCTTAGGCT 59.447 37.037 0.00 0.00 0.00 4.58
2642 13712 7.335924 TGTGTACAAATGGTTCTATTCTTAGGC 59.664 37.037 0.00 0.00 0.00 3.93
2643 13713 8.665685 GTGTGTACAAATGGTTCTATTCTTAGG 58.334 37.037 0.00 0.00 0.00 2.69
2644 13714 8.665685 GGTGTGTACAAATGGTTCTATTCTTAG 58.334 37.037 0.00 0.00 0.00 2.18
2645 13715 8.158132 TGGTGTGTACAAATGGTTCTATTCTTA 58.842 33.333 0.00 0.00 0.00 2.10
2646 13716 7.001674 TGGTGTGTACAAATGGTTCTATTCTT 58.998 34.615 0.00 0.00 0.00 2.52
2647 13717 6.539173 TGGTGTGTACAAATGGTTCTATTCT 58.461 36.000 0.00 0.00 0.00 2.40
2648 13718 6.811253 TGGTGTGTACAAATGGTTCTATTC 57.189 37.500 0.00 0.00 0.00 1.75
2649 13719 7.175104 AGATGGTGTGTACAAATGGTTCTATT 58.825 34.615 0.00 0.00 0.00 1.73
2650 13720 6.721318 AGATGGTGTGTACAAATGGTTCTAT 58.279 36.000 0.00 0.00 0.00 1.98
2651 13721 6.013725 AGAGATGGTGTGTACAAATGGTTCTA 60.014 38.462 0.00 0.00 0.00 2.10
2652 13722 4.985538 AGATGGTGTGTACAAATGGTTCT 58.014 39.130 0.00 0.00 0.00 3.01
2653 13723 5.003804 AGAGATGGTGTGTACAAATGGTTC 58.996 41.667 0.00 0.00 0.00 3.62
2654 13724 4.985538 AGAGATGGTGTGTACAAATGGTT 58.014 39.130 0.00 0.00 0.00 3.67
2655 13725 4.041567 TGAGAGATGGTGTGTACAAATGGT 59.958 41.667 0.00 0.00 0.00 3.55
2656 13726 4.578871 TGAGAGATGGTGTGTACAAATGG 58.421 43.478 0.00 0.00 0.00 3.16
2657 13727 6.558771 TTTGAGAGATGGTGTGTACAAATG 57.441 37.500 0.00 0.00 0.00 2.32
2658 13728 8.862325 TTATTTGAGAGATGGTGTGTACAAAT 57.138 30.769 0.00 0.00 39.14 2.32
2659 13729 8.154203 TCTTATTTGAGAGATGGTGTGTACAAA 58.846 33.333 0.00 0.00 0.00 2.83
2660 13730 7.602644 GTCTTATTTGAGAGATGGTGTGTACAA 59.397 37.037 0.00 0.00 0.00 2.41
2661 13731 7.039011 AGTCTTATTTGAGAGATGGTGTGTACA 60.039 37.037 0.00 0.00 0.00 2.90
2662 13732 7.324178 AGTCTTATTTGAGAGATGGTGTGTAC 58.676 38.462 0.00 0.00 0.00 2.90
2663 13733 7.482169 AGTCTTATTTGAGAGATGGTGTGTA 57.518 36.000 0.00 0.00 0.00 2.90
2664 13734 6.365970 AGTCTTATTTGAGAGATGGTGTGT 57.634 37.500 0.00 0.00 0.00 3.72
2665 13735 7.776107 TCTAGTCTTATTTGAGAGATGGTGTG 58.224 38.462 0.00 0.00 0.00 3.82
2666 13736 7.962995 TCTAGTCTTATTTGAGAGATGGTGT 57.037 36.000 0.00 0.00 0.00 4.16
2667 13737 7.925483 CCTTCTAGTCTTATTTGAGAGATGGTG 59.075 40.741 0.00 0.00 0.00 4.17
2668 13738 7.070571 CCCTTCTAGTCTTATTTGAGAGATGGT 59.929 40.741 0.00 0.00 30.53 3.55
2669 13739 7.070571 ACCCTTCTAGTCTTATTTGAGAGATGG 59.929 40.741 0.00 0.00 31.35 3.51
2670 13740 7.925483 CACCCTTCTAGTCTTATTTGAGAGATG 59.075 40.741 0.00 0.00 0.00 2.90
2671 13741 7.841729 TCACCCTTCTAGTCTTATTTGAGAGAT 59.158 37.037 0.00 0.00 0.00 2.75
2672 13742 7.122948 GTCACCCTTCTAGTCTTATTTGAGAGA 59.877 40.741 0.00 0.00 0.00 3.10
2673 13743 7.262048 GTCACCCTTCTAGTCTTATTTGAGAG 58.738 42.308 0.00 0.00 0.00 3.20
2674 13744 6.127703 CGTCACCCTTCTAGTCTTATTTGAGA 60.128 42.308 0.00 0.00 0.00 3.27
2675 13745 6.037098 CGTCACCCTTCTAGTCTTATTTGAG 58.963 44.000 0.00 0.00 0.00 3.02
2676 13746 5.623824 GCGTCACCCTTCTAGTCTTATTTGA 60.624 44.000 0.00 0.00 0.00 2.69
2677 13747 4.567159 GCGTCACCCTTCTAGTCTTATTTG 59.433 45.833 0.00 0.00 0.00 2.32
2678 13748 4.677250 CGCGTCACCCTTCTAGTCTTATTT 60.677 45.833 0.00 0.00 0.00 1.40
2679 13749 3.181489 CGCGTCACCCTTCTAGTCTTATT 60.181 47.826 0.00 0.00 0.00 1.40
2680 13750 2.358267 CGCGTCACCCTTCTAGTCTTAT 59.642 50.000 0.00 0.00 0.00 1.73
2681 13751 1.741706 CGCGTCACCCTTCTAGTCTTA 59.258 52.381 0.00 0.00 0.00 2.10
2682 13752 0.526662 CGCGTCACCCTTCTAGTCTT 59.473 55.000 0.00 0.00 0.00 3.01
2683 13753 1.935327 GCGCGTCACCCTTCTAGTCT 61.935 60.000 8.43 0.00 0.00 3.24
2684 13754 1.516603 GCGCGTCACCCTTCTAGTC 60.517 63.158 8.43 0.00 0.00 2.59
2685 13755 2.572284 GCGCGTCACCCTTCTAGT 59.428 61.111 8.43 0.00 0.00 2.57
2686 13756 2.579787 CGCGCGTCACCCTTCTAG 60.580 66.667 24.19 0.00 0.00 2.43
2687 13757 4.789075 GCGCGCGTCACCCTTCTA 62.789 66.667 32.35 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.