Multiple sequence alignment - TraesCS6A01G063900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G063900 chr6A 100.000 2551 0 0 1 2551 34072391 34069841 0.000000e+00 4711.0
1 TraesCS6A01G063900 chr6A 80.000 685 75 30 957 1597 34039795 34039129 1.390000e-122 449.0
2 TraesCS6A01G063900 chr6D 86.887 1121 74 32 615 1674 28627980 28629088 0.000000e+00 1188.0
3 TraesCS6A01G063900 chr6D 78.929 878 91 39 792 1601 28634245 28635096 6.300000e-141 510.0
4 TraesCS6A01G063900 chr6D 88.398 362 36 4 1671 2028 464399759 464399400 5.040000e-117 431.0
5 TraesCS6A01G063900 chr5A 91.748 618 51 0 1 618 580928409 580927792 0.000000e+00 859.0
6 TraesCS6A01G063900 chr5A 93.865 489 23 4 2069 2551 549480932 549480445 0.000000e+00 730.0
7 TraesCS6A01G063900 chr5A 90.517 348 29 2 1685 2029 438145239 438144893 8.320000e-125 457.0
8 TraesCS6A01G063900 chr1D 91.438 619 51 2 1 618 457215859 457215242 0.000000e+00 848.0
9 TraesCS6A01G063900 chr1D 91.234 616 54 0 1 616 433908324 433907709 0.000000e+00 839.0
10 TraesCS6A01G063900 chr1D 92.653 490 24 8 2069 2551 250893324 250893808 0.000000e+00 695.0
11 TraesCS6A01G063900 chr1D 89.256 363 34 3 1672 2030 336628461 336628100 1.390000e-122 449.0
12 TraesCS6A01G063900 chr1D 81.227 277 46 5 2066 2339 403527767 403528040 4.270000e-53 219.0
13 TraesCS6A01G063900 chr1D 97.826 46 0 1 2024 2068 477425741 477425696 7.570000e-11 78.7
14 TraesCS6A01G063900 chr5D 91.396 616 53 0 1 616 135516346 135516961 0.000000e+00 845.0
15 TraesCS6A01G063900 chr5D 93.574 249 13 2 2306 2551 510063491 510063739 4.010000e-98 368.0
16 TraesCS6A01G063900 chr5D 92.623 244 13 2 2066 2306 510061545 510061786 1.880000e-91 346.0
17 TraesCS6A01G063900 chr5D 100.000 45 0 0 2024 2068 23080197 23080153 1.630000e-12 84.2
18 TraesCS6A01G063900 chr5D 97.778 45 1 0 2024 2068 459008580 459008536 7.570000e-11 78.7
19 TraesCS6A01G063900 chr4D 91.100 618 54 1 1 618 435643358 435643974 0.000000e+00 835.0
20 TraesCS6A01G063900 chr4D 91.717 495 31 6 2067 2551 298533309 298532815 0.000000e+00 678.0
21 TraesCS6A01G063900 chr4D 88.430 363 37 5 1672 2030 364375544 364375183 1.400000e-117 433.0
22 TraesCS6A01G063900 chr2A 90.939 618 56 0 1 618 651133879 651133262 0.000000e+00 832.0
23 TraesCS6A01G063900 chr2A 90.251 359 30 3 1676 2030 148618767 148619124 4.970000e-127 464.0
24 TraesCS6A01G063900 chr2A 89.884 346 31 2 1688 2030 656245740 656245396 2.330000e-120 442.0
25 TraesCS6A01G063900 chr2A 81.884 276 42 7 2067 2339 764144702 764144972 2.550000e-55 226.0
26 TraesCS6A01G063900 chr7D 90.953 619 52 4 1 616 397377489 397378106 0.000000e+00 830.0
27 TraesCS6A01G063900 chr7D 97.778 45 1 0 2024 2068 506734571 506734615 7.570000e-11 78.7
28 TraesCS6A01G063900 chr7D 97.778 45 1 0 2024 2068 574211703 574211747 7.570000e-11 78.7
29 TraesCS6A01G063900 chr3D 90.909 616 56 0 1 616 420047548 420048163 0.000000e+00 828.0
30 TraesCS6A01G063900 chr3D 90.251 359 30 3 1676 2030 236666912 236667269 4.970000e-127 464.0
31 TraesCS6A01G063900 chr2D 90.777 618 55 2 1 618 386482633 386482018 0.000000e+00 824.0
32 TraesCS6A01G063900 chr2D 96.926 488 10 2 2069 2551 403352722 403353209 0.000000e+00 813.0
33 TraesCS6A01G063900 chr2B 92.434 489 28 5 2069 2551 37460551 37461036 0.000000e+00 689.0
34 TraesCS6A01G063900 chr2B 94.030 67 2 1 1999 2065 84894468 84894532 1.610000e-17 100.0
35 TraesCS6A01G063900 chr1B 91.446 491 27 6 2067 2551 50021054 50020573 0.000000e+00 660.0
36 TraesCS6A01G063900 chr1B 91.045 67 5 1 1999 2065 74528304 74528369 3.500000e-14 89.8
37 TraesCS6A01G063900 chr6B 83.001 753 50 29 969 1674 62155066 62154345 6.030000e-171 610.0
38 TraesCS6A01G063900 chr6B 85.983 585 33 18 1133 1674 62213393 62212815 4.730000e-162 580.0
39 TraesCS6A01G063900 chr6B 81.258 795 71 32 750 1490 62146811 62146041 2.850000e-159 571.0
40 TraesCS6A01G063900 chr6B 90.511 411 20 9 631 1037 62179472 62179077 2.250000e-145 525.0
41 TraesCS6A01G063900 chr6B 88.706 425 25 13 615 1037 62213840 62213437 4.900000e-137 497.0
42 TraesCS6A01G063900 chr6B 88.398 362 37 4 1669 2030 566545328 566545684 5.040000e-117 431.0
43 TraesCS6A01G063900 chr6B 82.975 511 35 15 1133 1601 62179042 62178542 5.080000e-112 414.0
44 TraesCS6A01G063900 chr6B 87.850 107 12 1 814 919 62155729 62155623 9.580000e-25 124.0
45 TraesCS6A01G063900 chr6B 97.917 48 1 0 633 680 62155913 62155866 1.630000e-12 84.2
46 TraesCS6A01G063900 chr6B 97.778 45 1 0 2024 2068 573267174 573267218 7.570000e-11 78.7
47 TraesCS6A01G063900 chr4B 88.251 366 35 5 1671 2030 100318669 100319032 5.040000e-117 431.0
48 TraesCS6A01G063900 chr7B 90.938 320 20 5 2238 2551 653359579 653359895 3.030000e-114 422.0
49 TraesCS6A01G063900 chr7B 82.645 121 7 7 2298 2416 254694923 254694815 7.510000e-16 95.3
50 TraesCS6A01G063900 chr3A 84.058 414 43 6 1676 2068 432235380 432235791 6.660000e-101 377.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G063900 chr6A 34069841 34072391 2550 True 4711.000000 4711 100.000000 1 2551 1 chr6A.!!$R2 2550
1 TraesCS6A01G063900 chr6A 34039129 34039795 666 True 449.000000 449 80.000000 957 1597 1 chr6A.!!$R1 640
2 TraesCS6A01G063900 chr6D 28627980 28629088 1108 False 1188.000000 1188 86.887000 615 1674 1 chr6D.!!$F1 1059
3 TraesCS6A01G063900 chr6D 28634245 28635096 851 False 510.000000 510 78.929000 792 1601 1 chr6D.!!$F2 809
4 TraesCS6A01G063900 chr5A 580927792 580928409 617 True 859.000000 859 91.748000 1 618 1 chr5A.!!$R3 617
5 TraesCS6A01G063900 chr1D 457215242 457215859 617 True 848.000000 848 91.438000 1 618 1 chr1D.!!$R3 617
6 TraesCS6A01G063900 chr1D 433907709 433908324 615 True 839.000000 839 91.234000 1 616 1 chr1D.!!$R2 615
7 TraesCS6A01G063900 chr5D 135516346 135516961 615 False 845.000000 845 91.396000 1 616 1 chr5D.!!$F1 615
8 TraesCS6A01G063900 chr5D 510061545 510063739 2194 False 357.000000 368 93.098500 2066 2551 2 chr5D.!!$F2 485
9 TraesCS6A01G063900 chr4D 435643358 435643974 616 False 835.000000 835 91.100000 1 618 1 chr4D.!!$F1 617
10 TraesCS6A01G063900 chr2A 651133262 651133879 617 True 832.000000 832 90.939000 1 618 1 chr2A.!!$R1 617
11 TraesCS6A01G063900 chr7D 397377489 397378106 617 False 830.000000 830 90.953000 1 616 1 chr7D.!!$F1 615
12 TraesCS6A01G063900 chr3D 420047548 420048163 615 False 828.000000 828 90.909000 1 616 1 chr3D.!!$F2 615
13 TraesCS6A01G063900 chr2D 386482018 386482633 615 True 824.000000 824 90.777000 1 618 1 chr2D.!!$R1 617
14 TraesCS6A01G063900 chr6B 62146041 62146811 770 True 571.000000 571 81.258000 750 1490 1 chr6B.!!$R1 740
15 TraesCS6A01G063900 chr6B 62212815 62213840 1025 True 538.500000 580 87.344500 615 1674 2 chr6B.!!$R4 1059
16 TraesCS6A01G063900 chr6B 62178542 62179472 930 True 469.500000 525 86.743000 631 1601 2 chr6B.!!$R3 970
17 TraesCS6A01G063900 chr6B 62154345 62155913 1568 True 272.733333 610 89.589333 633 1674 3 chr6B.!!$R2 1041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 918 0.031449 CCTCGATCCTTCTTCCGCTC 59.969 60.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 2655 0.035056 GTGAGGAGGAATGGGGTGTG 60.035 60.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
224 226 0.586802 CGACGAGTGATCTATGGCGA 59.413 55.000 0.00 0.00 34.07 5.54
336 338 1.960763 GTGCTGGCATGTGTGTCGA 60.961 57.895 0.00 0.00 30.74 4.20
450 455 2.124151 GCATGATTGGCCTCCGGT 60.124 61.111 3.32 0.00 0.00 5.28
493 498 8.821686 TGAATATGGACATAAAATGAGTTGGT 57.178 30.769 0.00 0.00 0.00 3.67
514 519 3.307906 TTGGGCGCACTACCGACT 61.308 61.111 12.74 0.00 36.24 4.18
529 534 6.422701 CACTACCGACTCAAATACAAAACTGA 59.577 38.462 0.00 0.00 0.00 3.41
538 543 2.228138 TACAAAACTGAACGGACGCT 57.772 45.000 0.00 0.00 0.00 5.07
541 546 0.179067 AAAACTGAACGGACGCTGGA 60.179 50.000 0.00 0.00 0.00 3.86
542 547 0.034896 AAACTGAACGGACGCTGGAT 59.965 50.000 0.00 0.00 0.00 3.41
544 549 1.215382 CTGAACGGACGCTGGATGA 59.785 57.895 0.00 0.00 0.00 2.92
571 576 3.186205 CCGATCCAAACAAACAAAATGCC 59.814 43.478 0.00 0.00 0.00 4.40
624 629 5.437060 TGTTGAAGTTGCTCTTAAACTCCT 58.563 37.500 17.12 0.00 44.07 3.69
627 632 2.689646 AGTTGCTCTTAAACTCCTCGC 58.310 47.619 0.00 0.00 32.36 5.03
727 736 5.986135 CGGTCAATAAGAGGAGGACAAATAG 59.014 44.000 0.00 0.00 0.00 1.73
792 801 0.096454 GACAAAATCCTACGGTGCGC 59.904 55.000 0.00 0.00 0.00 6.09
794 803 1.375013 AAAATCCTACGGTGCGCGT 60.375 52.632 8.43 0.00 0.00 6.01
795 804 1.632046 AAAATCCTACGGTGCGCGTG 61.632 55.000 8.43 0.00 0.00 5.34
843 869 2.809181 TCACGCGTGACATGACTTC 58.191 52.632 36.40 0.00 34.14 3.01
883 918 0.031449 CCTCGATCCTTCTTCCGCTC 59.969 60.000 0.00 0.00 0.00 5.03
925 1187 3.526931 TGCATGCCAAGTCTAGTCTAC 57.473 47.619 16.68 0.00 0.00 2.59
1000 1553 4.373116 GCGCCTCAACTCGACCCA 62.373 66.667 0.00 0.00 0.00 4.51
1009 1566 2.030562 CTCGACCCACCCACACAC 59.969 66.667 0.00 0.00 0.00 3.82
1125 1708 3.289128 CAACGAGTGCTCAGGACAA 57.711 52.632 0.00 0.00 0.00 3.18
1464 2130 4.262617 TCTAGCTAGGAGTGTGTGTGTAG 58.737 47.826 20.58 0.00 0.00 2.74
1526 2202 9.646427 TGTAAAGCAAGTTCTTTTGTTAATTGT 57.354 25.926 5.88 0.00 37.46 2.71
1597 2274 3.251729 GGGTTGACCTCCGTTTTTACTTC 59.748 47.826 0.00 0.00 35.85 3.01
1628 2312 8.093307 CACTATGAGATGTTTGGCTATCAGTAT 58.907 37.037 0.00 0.00 0.00 2.12
1674 2362 3.588955 GTTCCTTTGGGCTAAGCATTTG 58.411 45.455 0.00 0.00 0.00 2.32
1675 2363 2.888212 TCCTTTGGGCTAAGCATTTGT 58.112 42.857 0.00 0.00 0.00 2.83
1676 2364 2.825532 TCCTTTGGGCTAAGCATTTGTC 59.174 45.455 0.00 0.00 0.00 3.18
1677 2365 2.827921 CCTTTGGGCTAAGCATTTGTCT 59.172 45.455 0.00 0.00 0.00 3.41
1678 2366 3.259123 CCTTTGGGCTAAGCATTTGTCTT 59.741 43.478 0.00 0.00 0.00 3.01
1679 2367 4.462483 CCTTTGGGCTAAGCATTTGTCTTA 59.538 41.667 0.00 0.00 0.00 2.10
1680 2368 5.385509 TTTGGGCTAAGCATTTGTCTTAC 57.614 39.130 0.00 0.00 0.00 2.34
1681 2369 4.301072 TGGGCTAAGCATTTGTCTTACT 57.699 40.909 0.00 0.00 0.00 2.24
1682 2370 4.261801 TGGGCTAAGCATTTGTCTTACTC 58.738 43.478 0.00 0.00 0.00 2.59
1683 2371 4.019321 TGGGCTAAGCATTTGTCTTACTCT 60.019 41.667 0.00 0.00 0.00 3.24
1684 2372 4.944317 GGGCTAAGCATTTGTCTTACTCTT 59.056 41.667 0.00 0.00 0.00 2.85
1685 2373 6.113411 GGGCTAAGCATTTGTCTTACTCTTA 58.887 40.000 0.00 0.00 0.00 2.10
1686 2374 6.768381 GGGCTAAGCATTTGTCTTACTCTTAT 59.232 38.462 0.00 0.00 0.00 1.73
1687 2375 7.931948 GGGCTAAGCATTTGTCTTACTCTTATA 59.068 37.037 0.00 0.00 0.00 0.98
1688 2376 9.326413 GGCTAAGCATTTGTCTTACTCTTATAA 57.674 33.333 0.00 0.00 0.00 0.98
1712 2400 6.668541 AAAATTGAGTCGGTGATGATAGTG 57.331 37.500 0.00 0.00 0.00 2.74
1713 2401 5.344743 AATTGAGTCGGTGATGATAGTGT 57.655 39.130 0.00 0.00 0.00 3.55
1714 2402 3.782889 TGAGTCGGTGATGATAGTGTG 57.217 47.619 0.00 0.00 0.00 3.82
1715 2403 3.089284 TGAGTCGGTGATGATAGTGTGT 58.911 45.455 0.00 0.00 0.00 3.72
1716 2404 3.128764 TGAGTCGGTGATGATAGTGTGTC 59.871 47.826 0.00 0.00 0.00 3.67
1717 2405 3.357203 AGTCGGTGATGATAGTGTGTCT 58.643 45.455 0.00 0.00 0.00 3.41
1718 2406 3.129462 AGTCGGTGATGATAGTGTGTCTG 59.871 47.826 0.00 0.00 0.00 3.51
1719 2407 3.128764 GTCGGTGATGATAGTGTGTCTGA 59.871 47.826 0.00 0.00 0.00 3.27
1720 2408 3.128764 TCGGTGATGATAGTGTGTCTGAC 59.871 47.826 0.00 0.00 0.00 3.51
1721 2409 3.119495 CGGTGATGATAGTGTGTCTGACA 60.119 47.826 6.36 6.36 0.00 3.58
1722 2410 4.440663 CGGTGATGATAGTGTGTCTGACAT 60.441 45.833 14.37 0.41 36.78 3.06
1723 2411 5.046529 GGTGATGATAGTGTGTCTGACATC 58.953 45.833 14.37 7.53 36.78 3.06
1724 2412 5.163468 GGTGATGATAGTGTGTCTGACATCT 60.163 44.000 14.37 16.39 38.93 2.90
1725 2413 6.336566 GTGATGATAGTGTGTCTGACATCTT 58.663 40.000 14.37 5.23 38.93 2.40
1726 2414 7.416777 GGTGATGATAGTGTGTCTGACATCTTA 60.417 40.741 14.37 7.10 38.93 2.10
1727 2415 7.433719 GTGATGATAGTGTGTCTGACATCTTAC 59.566 40.741 14.37 10.71 38.93 2.34
1728 2416 6.834168 TGATAGTGTGTCTGACATCTTACA 57.166 37.500 14.37 13.98 36.78 2.41
1729 2417 7.227049 TGATAGTGTGTCTGACATCTTACAA 57.773 36.000 14.37 2.00 36.78 2.41
1730 2418 7.840931 TGATAGTGTGTCTGACATCTTACAAT 58.159 34.615 14.37 8.46 36.78 2.71
1731 2419 8.966868 TGATAGTGTGTCTGACATCTTACAATA 58.033 33.333 14.37 10.32 36.78 1.90
1732 2420 9.973450 GATAGTGTGTCTGACATCTTACAATAT 57.027 33.333 14.37 14.27 36.78 1.28
1737 2425 9.378551 TGTGTCTGACATCTTACAATATAAACC 57.621 33.333 14.37 0.00 0.00 3.27
1738 2426 8.540492 GTGTCTGACATCTTACAATATAAACCG 58.460 37.037 14.37 0.00 0.00 4.44
1739 2427 8.255206 TGTCTGACATCTTACAATATAAACCGT 58.745 33.333 6.36 0.00 0.00 4.83
1740 2428 8.753175 GTCTGACATCTTACAATATAAACCGTC 58.247 37.037 2.24 0.00 0.00 4.79
1741 2429 7.924412 TCTGACATCTTACAATATAAACCGTCC 59.076 37.037 0.00 0.00 0.00 4.79
1742 2430 6.698329 TGACATCTTACAATATAAACCGTCCG 59.302 38.462 0.00 0.00 0.00 4.79
1743 2431 6.808829 ACATCTTACAATATAAACCGTCCGA 58.191 36.000 0.00 0.00 0.00 4.55
1744 2432 7.439381 ACATCTTACAATATAAACCGTCCGAT 58.561 34.615 0.00 0.00 0.00 4.18
1745 2433 7.597743 ACATCTTACAATATAAACCGTCCGATC 59.402 37.037 0.00 0.00 0.00 3.69
1746 2434 7.281040 TCTTACAATATAAACCGTCCGATCT 57.719 36.000 0.00 0.00 0.00 2.75
1747 2435 8.394971 TCTTACAATATAAACCGTCCGATCTA 57.605 34.615 0.00 0.00 0.00 1.98
1748 2436 9.017509 TCTTACAATATAAACCGTCCGATCTAT 57.982 33.333 0.00 0.00 0.00 1.98
1755 2443 9.798994 ATATAAACCGTCCGATCTATATTTGAC 57.201 33.333 0.00 0.00 0.00 3.18
1756 2444 4.156664 ACCGTCCGATCTATATTTGACG 57.843 45.455 0.00 0.00 43.64 4.35
1758 2446 4.414999 CGTCCGATCTATATTTGACGGA 57.585 45.455 0.00 0.00 45.36 4.69
1761 2449 5.372547 TCCGATCTATATTTGACGGACAG 57.627 43.478 0.00 0.00 43.30 3.51
1762 2450 5.067954 TCCGATCTATATTTGACGGACAGA 58.932 41.667 0.00 0.00 43.30 3.41
1763 2451 5.533528 TCCGATCTATATTTGACGGACAGAA 59.466 40.000 0.00 0.00 43.30 3.02
1764 2452 6.040054 TCCGATCTATATTTGACGGACAGAAA 59.960 38.462 0.00 0.00 43.30 2.52
1765 2453 6.363626 CCGATCTATATTTGACGGACAGAAAG 59.636 42.308 0.00 0.00 42.40 2.62
1766 2454 6.129062 CGATCTATATTTGACGGACAGAAAGC 60.129 42.308 0.00 0.00 0.00 3.51
1767 2455 5.972935 TCTATATTTGACGGACAGAAAGCA 58.027 37.500 0.00 0.00 0.00 3.91
1768 2456 6.403049 TCTATATTTGACGGACAGAAAGCAA 58.597 36.000 0.00 0.00 0.00 3.91
1769 2457 5.957842 ATATTTGACGGACAGAAAGCAAA 57.042 34.783 0.00 0.00 0.00 3.68
1770 2458 4.853924 ATTTGACGGACAGAAAGCAAAT 57.146 36.364 0.00 0.00 32.81 2.32
1771 2459 4.647424 TTTGACGGACAGAAAGCAAATT 57.353 36.364 0.00 0.00 0.00 1.82
1772 2460 3.624326 TGACGGACAGAAAGCAAATTG 57.376 42.857 0.00 0.00 0.00 2.32
1773 2461 2.948979 TGACGGACAGAAAGCAAATTGT 59.051 40.909 0.00 0.00 0.00 2.71
1774 2462 3.243035 TGACGGACAGAAAGCAAATTGTG 60.243 43.478 0.00 0.00 0.00 3.33
1775 2463 2.034558 ACGGACAGAAAGCAAATTGTGG 59.965 45.455 0.00 0.00 0.00 4.17
1776 2464 2.407090 GGACAGAAAGCAAATTGTGGC 58.593 47.619 0.00 0.00 31.03 5.01
1777 2465 2.224018 GGACAGAAAGCAAATTGTGGCA 60.224 45.455 0.00 0.00 33.40 4.92
1778 2466 3.456280 GACAGAAAGCAAATTGTGGCAA 58.544 40.909 0.00 0.00 32.10 4.52
1779 2467 4.060205 GACAGAAAGCAAATTGTGGCAAT 58.940 39.130 0.00 0.00 32.10 3.56
1780 2468 4.453751 ACAGAAAGCAAATTGTGGCAATT 58.546 34.783 0.00 1.68 0.00 2.32
1781 2469 4.883006 ACAGAAAGCAAATTGTGGCAATTT 59.117 33.333 12.41 12.41 0.00 1.82
1782 2470 5.357596 ACAGAAAGCAAATTGTGGCAATTTT 59.642 32.000 14.76 3.80 0.00 1.82
1783 2471 5.683743 CAGAAAGCAAATTGTGGCAATTTTG 59.316 36.000 14.76 11.55 0.00 2.44
1799 2487 5.508872 CAATTTTGCAAAAAGAAATCCGCA 58.491 33.333 27.10 1.37 0.00 5.69
1800 2488 4.528531 TTTTGCAAAAAGAAATCCGCAC 57.471 36.364 21.94 0.00 0.00 5.34
1801 2489 2.879002 TGCAAAAAGAAATCCGCACA 57.121 40.000 0.00 0.00 0.00 4.57
1802 2490 3.383620 TGCAAAAAGAAATCCGCACAT 57.616 38.095 0.00 0.00 0.00 3.21
1803 2491 3.316283 TGCAAAAAGAAATCCGCACATC 58.684 40.909 0.00 0.00 0.00 3.06
1804 2492 3.005684 TGCAAAAAGAAATCCGCACATCT 59.994 39.130 0.00 0.00 0.00 2.90
1805 2493 3.609807 GCAAAAAGAAATCCGCACATCTC 59.390 43.478 0.00 0.00 0.00 2.75
1806 2494 4.616835 GCAAAAAGAAATCCGCACATCTCT 60.617 41.667 0.00 0.00 0.00 3.10
1807 2495 4.954092 AAAAGAAATCCGCACATCTCTC 57.046 40.909 0.00 0.00 0.00 3.20
1808 2496 2.215907 AGAAATCCGCACATCTCTCG 57.784 50.000 0.00 0.00 0.00 4.04
1809 2497 1.751351 AGAAATCCGCACATCTCTCGA 59.249 47.619 0.00 0.00 0.00 4.04
1810 2498 1.855360 GAAATCCGCACATCTCTCGAC 59.145 52.381 0.00 0.00 0.00 4.20
1811 2499 0.817654 AATCCGCACATCTCTCGACA 59.182 50.000 0.00 0.00 0.00 4.35
1812 2500 1.035923 ATCCGCACATCTCTCGACAT 58.964 50.000 0.00 0.00 0.00 3.06
1813 2501 0.817654 TCCGCACATCTCTCGACATT 59.182 50.000 0.00 0.00 0.00 2.71
1814 2502 1.204704 TCCGCACATCTCTCGACATTT 59.795 47.619 0.00 0.00 0.00 2.32
1815 2503 1.325640 CCGCACATCTCTCGACATTTG 59.674 52.381 0.00 0.00 0.00 2.32
1816 2504 1.267235 CGCACATCTCTCGACATTTGC 60.267 52.381 0.00 0.00 0.00 3.68
1817 2505 1.733912 GCACATCTCTCGACATTTGCA 59.266 47.619 0.00 0.00 0.00 4.08
1818 2506 2.222976 GCACATCTCTCGACATTTGCAG 60.223 50.000 0.00 0.00 0.00 4.41
1819 2507 3.256558 CACATCTCTCGACATTTGCAGA 58.743 45.455 0.00 0.00 0.00 4.26
1820 2508 3.869832 CACATCTCTCGACATTTGCAGAT 59.130 43.478 0.00 0.00 0.00 2.90
1821 2509 5.045872 CACATCTCTCGACATTTGCAGATA 58.954 41.667 0.00 0.00 0.00 1.98
1822 2510 5.521372 CACATCTCTCGACATTTGCAGATAA 59.479 40.000 0.00 0.00 0.00 1.75
1823 2511 5.752472 ACATCTCTCGACATTTGCAGATAAG 59.248 40.000 0.00 0.00 0.00 1.73
1824 2512 4.686972 TCTCTCGACATTTGCAGATAAGG 58.313 43.478 0.00 0.00 0.00 2.69
1825 2513 3.198068 TCTCGACATTTGCAGATAAGGC 58.802 45.455 0.00 0.00 0.00 4.35
1826 2514 2.938451 CTCGACATTTGCAGATAAGGCA 59.062 45.455 0.00 0.00 40.00 4.75
1827 2515 3.544684 TCGACATTTGCAGATAAGGCAT 58.455 40.909 0.00 0.00 41.58 4.40
1828 2516 3.947196 TCGACATTTGCAGATAAGGCATT 59.053 39.130 0.00 0.00 41.58 3.56
1829 2517 4.035558 TCGACATTTGCAGATAAGGCATTC 59.964 41.667 0.00 0.00 41.58 2.67
1830 2518 4.614946 GACATTTGCAGATAAGGCATTCC 58.385 43.478 0.00 0.00 41.58 3.01
1831 2519 3.385755 ACATTTGCAGATAAGGCATTCCC 59.614 43.478 0.00 0.00 41.58 3.97
1833 2521 2.645838 TGCAGATAAGGCATTCCCTC 57.354 50.000 0.00 0.00 45.62 4.30
1834 2522 1.202687 TGCAGATAAGGCATTCCCTCG 60.203 52.381 0.00 0.00 45.62 4.63
1835 2523 1.202698 GCAGATAAGGCATTCCCTCGT 60.203 52.381 0.00 0.00 45.62 4.18
1836 2524 2.746472 GCAGATAAGGCATTCCCTCGTT 60.746 50.000 0.00 0.00 45.62 3.85
1837 2525 3.134458 CAGATAAGGCATTCCCTCGTTC 58.866 50.000 0.00 0.00 45.62 3.95
1838 2526 2.771943 AGATAAGGCATTCCCTCGTTCA 59.228 45.455 0.00 0.00 45.62 3.18
1839 2527 3.392616 AGATAAGGCATTCCCTCGTTCAT 59.607 43.478 0.00 0.00 45.62 2.57
1840 2528 2.044123 AAGGCATTCCCTCGTTCATC 57.956 50.000 0.00 0.00 45.62 2.92
1841 2529 0.181350 AGGCATTCCCTCGTTCATCC 59.819 55.000 0.00 0.00 41.21 3.51
1842 2530 0.181350 GGCATTCCCTCGTTCATCCT 59.819 55.000 0.00 0.00 0.00 3.24
1843 2531 1.408822 GGCATTCCCTCGTTCATCCTT 60.409 52.381 0.00 0.00 0.00 3.36
1844 2532 2.158813 GGCATTCCCTCGTTCATCCTTA 60.159 50.000 0.00 0.00 0.00 2.69
1845 2533 3.496870 GGCATTCCCTCGTTCATCCTTAT 60.497 47.826 0.00 0.00 0.00 1.73
1846 2534 3.748568 GCATTCCCTCGTTCATCCTTATC 59.251 47.826 0.00 0.00 0.00 1.75
1847 2535 4.503991 GCATTCCCTCGTTCATCCTTATCT 60.504 45.833 0.00 0.00 0.00 1.98
1848 2536 5.615289 CATTCCCTCGTTCATCCTTATCTT 58.385 41.667 0.00 0.00 0.00 2.40
1849 2537 4.939052 TCCCTCGTTCATCCTTATCTTC 57.061 45.455 0.00 0.00 0.00 2.87
1850 2538 3.641906 TCCCTCGTTCATCCTTATCTTCC 59.358 47.826 0.00 0.00 0.00 3.46
1851 2539 3.388024 CCCTCGTTCATCCTTATCTTCCA 59.612 47.826 0.00 0.00 0.00 3.53
1852 2540 4.372656 CCTCGTTCATCCTTATCTTCCAC 58.627 47.826 0.00 0.00 0.00 4.02
1853 2541 4.141937 CCTCGTTCATCCTTATCTTCCACA 60.142 45.833 0.00 0.00 0.00 4.17
1854 2542 5.414789 TCGTTCATCCTTATCTTCCACAA 57.585 39.130 0.00 0.00 0.00 3.33
1855 2543 5.175859 TCGTTCATCCTTATCTTCCACAAC 58.824 41.667 0.00 0.00 0.00 3.32
1856 2544 4.332819 CGTTCATCCTTATCTTCCACAACC 59.667 45.833 0.00 0.00 0.00 3.77
1857 2545 5.501156 GTTCATCCTTATCTTCCACAACCT 58.499 41.667 0.00 0.00 0.00 3.50
1858 2546 5.359194 TCATCCTTATCTTCCACAACCTC 57.641 43.478 0.00 0.00 0.00 3.85
1859 2547 4.782691 TCATCCTTATCTTCCACAACCTCA 59.217 41.667 0.00 0.00 0.00 3.86
1860 2548 5.429762 TCATCCTTATCTTCCACAACCTCAT 59.570 40.000 0.00 0.00 0.00 2.90
1861 2549 5.779241 TCCTTATCTTCCACAACCTCATT 57.221 39.130 0.00 0.00 0.00 2.57
1862 2550 5.500234 TCCTTATCTTCCACAACCTCATTG 58.500 41.667 0.00 0.00 44.60 2.82
1875 2563 6.841443 CAACCTCATTGTTGTGCAATTAAA 57.159 33.333 0.00 0.00 44.82 1.52
1876 2564 7.244166 CAACCTCATTGTTGTGCAATTAAAA 57.756 32.000 0.00 0.00 44.82 1.52
1877 2565 7.692088 CAACCTCATTGTTGTGCAATTAAAAA 58.308 30.769 0.00 0.00 44.82 1.94
1933 2621 4.570663 CCGGCGTCGTCCATCCTC 62.571 72.222 9.28 0.00 33.95 3.71
1934 2622 3.822192 CGGCGTCGTCCATCCTCA 61.822 66.667 0.00 0.00 0.00 3.86
1935 2623 2.815308 GGCGTCGTCCATCCTCAT 59.185 61.111 0.00 0.00 0.00 2.90
1936 2624 1.592669 GGCGTCGTCCATCCTCATG 60.593 63.158 0.00 0.00 0.00 3.07
1937 2625 2.240500 GCGTCGTCCATCCTCATGC 61.241 63.158 0.00 0.00 0.00 4.06
1938 2626 1.592669 CGTCGTCCATCCTCATGCC 60.593 63.158 0.00 0.00 0.00 4.40
1939 2627 1.826024 GTCGTCCATCCTCATGCCT 59.174 57.895 0.00 0.00 0.00 4.75
1940 2628 0.249657 GTCGTCCATCCTCATGCCTC 60.250 60.000 0.00 0.00 0.00 4.70
1941 2629 1.070445 CGTCCATCCTCATGCCTCC 59.930 63.158 0.00 0.00 0.00 4.30
1942 2630 1.070445 GTCCATCCTCATGCCTCCG 59.930 63.158 0.00 0.00 0.00 4.63
1943 2631 2.281345 CCATCCTCATGCCTCCGC 60.281 66.667 0.00 0.00 0.00 5.54
1944 2632 2.815945 CCATCCTCATGCCTCCGCT 61.816 63.158 0.00 0.00 35.36 5.52
1945 2633 1.301558 CATCCTCATGCCTCCGCTC 60.302 63.158 0.00 0.00 35.36 5.03
1946 2634 1.763655 ATCCTCATGCCTCCGCTCA 60.764 57.895 0.00 0.00 35.36 4.26
1947 2635 1.756408 ATCCTCATGCCTCCGCTCAG 61.756 60.000 0.00 0.00 35.36 3.35
1948 2636 2.729479 CCTCATGCCTCCGCTCAGT 61.729 63.158 0.00 0.00 35.36 3.41
1949 2637 1.227205 CTCATGCCTCCGCTCAGTC 60.227 63.158 0.00 0.00 35.36 3.51
1950 2638 2.202987 CATGCCTCCGCTCAGTCC 60.203 66.667 0.00 0.00 35.36 3.85
1951 2639 3.842923 ATGCCTCCGCTCAGTCCG 61.843 66.667 0.00 0.00 35.36 4.79
1953 2641 3.532155 GCCTCCGCTCAGTCCGAT 61.532 66.667 0.00 0.00 0.00 4.18
1954 2642 2.725008 CCTCCGCTCAGTCCGATC 59.275 66.667 0.00 0.00 0.00 3.69
1955 2643 2.121538 CCTCCGCTCAGTCCGATCA 61.122 63.158 0.00 0.00 0.00 2.92
1956 2644 1.459455 CCTCCGCTCAGTCCGATCAT 61.459 60.000 0.00 0.00 0.00 2.45
1957 2645 0.039617 CTCCGCTCAGTCCGATCATC 60.040 60.000 0.00 0.00 0.00 2.92
1958 2646 0.751643 TCCGCTCAGTCCGATCATCA 60.752 55.000 0.00 0.00 0.00 3.07
1959 2647 0.103026 CCGCTCAGTCCGATCATCAA 59.897 55.000 0.00 0.00 0.00 2.57
1960 2648 1.269988 CCGCTCAGTCCGATCATCAAT 60.270 52.381 0.00 0.00 0.00 2.57
1961 2649 2.057316 CGCTCAGTCCGATCATCAATC 58.943 52.381 0.00 0.00 0.00 2.67
1962 2650 2.544486 CGCTCAGTCCGATCATCAATCA 60.544 50.000 0.00 0.00 33.65 2.57
1963 2651 2.799412 GCTCAGTCCGATCATCAATCAC 59.201 50.000 0.00 0.00 33.65 3.06
1964 2652 3.388308 CTCAGTCCGATCATCAATCACC 58.612 50.000 0.00 0.00 33.65 4.02
1965 2653 2.765699 TCAGTCCGATCATCAATCACCA 59.234 45.455 0.00 0.00 33.65 4.17
1966 2654 2.868583 CAGTCCGATCATCAATCACCAC 59.131 50.000 0.00 0.00 33.65 4.16
1967 2655 2.158900 AGTCCGATCATCAATCACCACC 60.159 50.000 0.00 0.00 33.65 4.61
1968 2656 1.836802 TCCGATCATCAATCACCACCA 59.163 47.619 0.00 0.00 33.65 4.17
1969 2657 1.942657 CCGATCATCAATCACCACCAC 59.057 52.381 0.00 0.00 33.65 4.16
1970 2658 2.631267 CGATCATCAATCACCACCACA 58.369 47.619 0.00 0.00 33.65 4.17
1971 2659 2.352651 CGATCATCAATCACCACCACAC 59.647 50.000 0.00 0.00 33.65 3.82
1972 2660 2.198827 TCATCAATCACCACCACACC 57.801 50.000 0.00 0.00 0.00 4.16
1973 2661 1.176527 CATCAATCACCACCACACCC 58.823 55.000 0.00 0.00 0.00 4.61
1974 2662 0.039618 ATCAATCACCACCACACCCC 59.960 55.000 0.00 0.00 0.00 4.95
1975 2663 1.152599 CAATCACCACCACACCCCA 59.847 57.895 0.00 0.00 0.00 4.96
1976 2664 0.251742 CAATCACCACCACACCCCAT 60.252 55.000 0.00 0.00 0.00 4.00
1977 2665 0.486879 AATCACCACCACACCCCATT 59.513 50.000 0.00 0.00 0.00 3.16
1978 2666 0.039618 ATCACCACCACACCCCATTC 59.960 55.000 0.00 0.00 0.00 2.67
1979 2667 1.606313 CACCACCACACCCCATTCC 60.606 63.158 0.00 0.00 0.00 3.01
1980 2668 1.778383 ACCACCACACCCCATTCCT 60.778 57.895 0.00 0.00 0.00 3.36
1981 2669 1.000896 CCACCACACCCCATTCCTC 60.001 63.158 0.00 0.00 0.00 3.71
1982 2670 1.000896 CACCACACCCCATTCCTCC 60.001 63.158 0.00 0.00 0.00 4.30
1983 2671 1.151587 ACCACACCCCATTCCTCCT 60.152 57.895 0.00 0.00 0.00 3.69
1984 2672 1.208165 ACCACACCCCATTCCTCCTC 61.208 60.000 0.00 0.00 0.00 3.71
1985 2673 1.207488 CCACACCCCATTCCTCCTCA 61.207 60.000 0.00 0.00 0.00 3.86
1986 2674 0.035056 CACACCCCATTCCTCCTCAC 60.035 60.000 0.00 0.00 0.00 3.51
1987 2675 1.208165 ACACCCCATTCCTCCTCACC 61.208 60.000 0.00 0.00 0.00 4.02
1988 2676 0.916358 CACCCCATTCCTCCTCACCT 60.916 60.000 0.00 0.00 0.00 4.00
1989 2677 0.178831 ACCCCATTCCTCCTCACCTT 60.179 55.000 0.00 0.00 0.00 3.50
1990 2678 1.082194 ACCCCATTCCTCCTCACCTTA 59.918 52.381 0.00 0.00 0.00 2.69
1991 2679 2.294536 ACCCCATTCCTCCTCACCTTAT 60.295 50.000 0.00 0.00 0.00 1.73
1992 2680 2.373502 CCCCATTCCTCCTCACCTTATC 59.626 54.545 0.00 0.00 0.00 1.75
1993 2681 3.321950 CCCATTCCTCCTCACCTTATCT 58.678 50.000 0.00 0.00 0.00 1.98
1994 2682 3.326297 CCCATTCCTCCTCACCTTATCTC 59.674 52.174 0.00 0.00 0.00 2.75
1995 2683 4.230455 CCATTCCTCCTCACCTTATCTCT 58.770 47.826 0.00 0.00 0.00 3.10
1996 2684 4.283212 CCATTCCTCCTCACCTTATCTCTC 59.717 50.000 0.00 0.00 0.00 3.20
1997 2685 4.890499 TTCCTCCTCACCTTATCTCTCT 57.110 45.455 0.00 0.00 0.00 3.10
1998 2686 4.890499 TCCTCCTCACCTTATCTCTCTT 57.110 45.455 0.00 0.00 0.00 2.85
1999 2687 5.213868 TCCTCCTCACCTTATCTCTCTTT 57.786 43.478 0.00 0.00 0.00 2.52
2000 2688 5.205056 TCCTCCTCACCTTATCTCTCTTTC 58.795 45.833 0.00 0.00 0.00 2.62
2001 2689 5.043732 TCCTCCTCACCTTATCTCTCTTTCT 60.044 44.000 0.00 0.00 0.00 2.52
2002 2690 5.301805 CCTCCTCACCTTATCTCTCTTTCTC 59.698 48.000 0.00 0.00 0.00 2.87
2003 2691 4.884744 TCCTCACCTTATCTCTCTTTCTCG 59.115 45.833 0.00 0.00 0.00 4.04
2004 2692 4.884744 CCTCACCTTATCTCTCTTTCTCGA 59.115 45.833 0.00 0.00 0.00 4.04
2005 2693 5.008613 CCTCACCTTATCTCTCTTTCTCGAG 59.991 48.000 5.93 5.93 0.00 4.04
2006 2694 5.746284 TCACCTTATCTCTCTTTCTCGAGA 58.254 41.667 12.08 12.08 40.26 4.04
2007 2695 6.361433 TCACCTTATCTCTCTTTCTCGAGAT 58.639 40.000 17.44 0.55 45.94 2.75
2008 2696 7.510407 TCACCTTATCTCTCTTTCTCGAGATA 58.490 38.462 17.44 10.92 43.26 1.98
2009 2697 7.442969 TCACCTTATCTCTCTTTCTCGAGATAC 59.557 40.741 17.44 0.00 44.53 2.24
2010 2698 6.713450 ACCTTATCTCTCTTTCTCGAGATACC 59.287 42.308 17.44 0.00 44.53 2.73
2011 2699 6.712998 CCTTATCTCTCTTTCTCGAGATACCA 59.287 42.308 17.44 0.00 44.53 3.25
2012 2700 7.393234 CCTTATCTCTCTTTCTCGAGATACCAT 59.607 40.741 17.44 5.13 44.53 3.55
2013 2701 8.698973 TTATCTCTCTTTCTCGAGATACCATT 57.301 34.615 17.44 0.60 44.53 3.16
2014 2702 9.794719 TTATCTCTCTTTCTCGAGATACCATTA 57.205 33.333 17.44 0.00 44.53 1.90
2015 2703 7.737972 TCTCTCTTTCTCGAGATACCATTAG 57.262 40.000 17.44 8.42 39.19 1.73
2016 2704 7.284074 TCTCTCTTTCTCGAGATACCATTAGT 58.716 38.462 17.44 0.00 39.19 2.24
2017 2705 7.776030 TCTCTCTTTCTCGAGATACCATTAGTT 59.224 37.037 17.44 0.00 39.19 2.24
2018 2706 8.294954 TCTCTTTCTCGAGATACCATTAGTTT 57.705 34.615 17.44 0.00 35.23 2.66
2019 2707 8.750298 TCTCTTTCTCGAGATACCATTAGTTTT 58.250 33.333 17.44 0.00 35.23 2.43
2020 2708 9.372369 CTCTTTCTCGAGATACCATTAGTTTTT 57.628 33.333 17.44 0.00 32.74 1.94
2023 2711 9.932207 TTTCTCGAGATACCATTAGTTTTTACA 57.068 29.630 17.44 0.00 0.00 2.41
2024 2712 8.922058 TCTCGAGATACCATTAGTTTTTACAC 57.078 34.615 12.08 0.00 0.00 2.90
2025 2713 8.525316 TCTCGAGATACCATTAGTTTTTACACA 58.475 33.333 12.08 0.00 0.00 3.72
2026 2714 9.314321 CTCGAGATACCATTAGTTTTTACACAT 57.686 33.333 6.58 0.00 0.00 3.21
2027 2715 9.093970 TCGAGATACCATTAGTTTTTACACATG 57.906 33.333 0.00 0.00 0.00 3.21
2028 2716 8.335356 CGAGATACCATTAGTTTTTACACATGG 58.665 37.037 0.00 0.00 37.73 3.66
2029 2717 8.519799 AGATACCATTAGTTTTTACACATGGG 57.480 34.615 0.00 0.00 36.29 4.00
2030 2718 8.113462 AGATACCATTAGTTTTTACACATGGGT 58.887 33.333 5.60 5.60 36.29 4.51
2031 2719 6.584185 ACCATTAGTTTTTACACATGGGTC 57.416 37.500 2.35 0.00 36.29 4.46
2032 2720 6.071984 ACCATTAGTTTTTACACATGGGTCA 58.928 36.000 2.35 0.00 36.29 4.02
2033 2721 6.551601 ACCATTAGTTTTTACACATGGGTCAA 59.448 34.615 2.35 0.00 36.29 3.18
2034 2722 7.234577 ACCATTAGTTTTTACACATGGGTCAAT 59.765 33.333 2.35 0.00 36.29 2.57
2035 2723 7.759433 CCATTAGTTTTTACACATGGGTCAATC 59.241 37.037 2.35 0.00 0.00 2.67
2036 2724 7.825331 TTAGTTTTTACACATGGGTCAATCA 57.175 32.000 2.35 0.00 0.00 2.57
2037 2725 6.084326 AGTTTTTACACATGGGTCAATCAC 57.916 37.500 2.35 0.10 0.00 3.06
2038 2726 5.596361 AGTTTTTACACATGGGTCAATCACA 59.404 36.000 2.35 0.00 0.00 3.58
2039 2727 6.097554 AGTTTTTACACATGGGTCAATCACAA 59.902 34.615 2.35 0.00 31.12 3.33
2040 2728 5.446143 TTTACACATGGGTCAATCACAAC 57.554 39.130 2.35 0.00 31.12 3.32
2041 2729 2.942804 ACACATGGGTCAATCACAACA 58.057 42.857 0.00 0.00 31.12 3.33
2042 2730 2.886523 ACACATGGGTCAATCACAACAG 59.113 45.455 0.00 0.00 31.12 3.16
2043 2731 2.229543 CACATGGGTCAATCACAACAGG 59.770 50.000 0.00 0.00 31.12 4.00
2044 2732 2.158475 ACATGGGTCAATCACAACAGGT 60.158 45.455 0.00 0.00 31.12 4.00
2052 2740 5.406649 GTCAATCACAACAGGTGTTTTGAA 58.593 37.500 14.01 0.00 44.63 2.69
2053 2741 5.866633 GTCAATCACAACAGGTGTTTTGAAA 59.133 36.000 14.01 3.05 44.63 2.69
2054 2742 6.367422 GTCAATCACAACAGGTGTTTTGAAAA 59.633 34.615 14.01 2.77 44.63 2.29
2055 2743 6.931281 TCAATCACAACAGGTGTTTTGAAAAA 59.069 30.769 14.01 2.48 44.63 1.94
2077 2765 5.806654 AAAAATGCATCTTAGGGTGTGTT 57.193 34.783 0.00 0.00 0.00 3.32
2079 2767 4.789012 AATGCATCTTAGGGTGTGTTTG 57.211 40.909 0.00 0.00 0.00 2.93
2128 2816 9.575783 TTTACAAAATACTGTGGTTTCTGAAAC 57.424 29.630 21.92 21.92 40.65 2.78
2131 2819 7.544217 ACAAAATACTGTGGTTTCTGAAACAAC 59.456 33.333 26.56 26.56 44.02 3.32
2141 2829 5.300792 GGTTTCTGAAACAACCTTGGTATCA 59.699 40.000 28.53 0.00 43.15 2.15
2142 2830 6.183360 GGTTTCTGAAACAACCTTGGTATCAA 60.183 38.462 28.53 0.00 43.15 2.57
2153 2841 5.269189 ACCTTGGTATCAAATACTTTGGGG 58.731 41.667 0.00 0.00 40.98 4.96
2212 2900 7.302948 ACCATGGTATCTCTTATACTGTGGTA 58.697 38.462 18.10 0.00 38.78 3.25
2270 2958 4.866508 TTTTCTAAACTGAGCCGAGAGA 57.133 40.909 0.00 0.00 0.00 3.10
2275 2963 2.285827 AACTGAGCCGAGAGAAATCG 57.714 50.000 0.00 0.00 42.36 3.34
2343 4739 8.772705 GCAAACTCTCTCCTGATTATTAATCTG 58.227 37.037 15.57 14.50 38.72 2.90
2369 4765 7.924358 TTACTAGGCATTTAAGGATAGGTGA 57.076 36.000 0.00 0.00 0.00 4.02
2391 4787 0.675633 AGCTTGCATTTCGCTGGTTT 59.324 45.000 0.00 0.00 43.06 3.27
2414 4812 2.094182 TGAGTATGTTCTTCCAGCCGTC 60.094 50.000 0.00 0.00 0.00 4.79
2435 4833 5.554138 CGTCGTCGTAGTAGTCTAACTGATG 60.554 48.000 0.00 0.00 0.00 3.07
2467 4866 7.571244 GCATTTAGGTTACATGATCGTATGGTG 60.571 40.741 0.00 0.00 32.32 4.17
2501 4900 4.832248 CTTGTCAATGCAGGAGGTAGTTA 58.168 43.478 0.00 0.00 0.00 2.24
2513 4912 6.205270 GCAGGAGGTAGTTATACTCTGTAGAC 59.795 46.154 0.00 0.00 32.41 2.59
2518 4917 8.032045 AGGTAGTTATACTCTGTAGACTGCTA 57.968 38.462 0.00 0.00 32.12 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.361230 TTCTCCGCCTCGAGCTGA 60.361 61.111 6.99 4.01 40.39 4.26
17 18 2.103934 CTTCTCCGCCTCGAGCTG 59.896 66.667 6.99 0.52 40.39 4.24
281 283 0.250124 TTGAGTTCGACCACGCCATT 60.250 50.000 0.00 0.00 39.58 3.16
389 394 0.535780 CCATGTCAGCACCGGCATAT 60.536 55.000 0.00 0.00 44.61 1.78
403 408 2.438975 CTCATGCCGGCACCATGT 60.439 61.111 35.50 13.69 40.63 3.21
474 479 3.190327 CGCACCAACTCATTTTATGTCCA 59.810 43.478 0.00 0.00 0.00 4.02
481 486 1.068434 CCCAACGCACCAACTCATTTT 59.932 47.619 0.00 0.00 0.00 1.82
508 513 5.277154 CGTTCAGTTTTGTATTTGAGTCGGT 60.277 40.000 0.00 0.00 0.00 4.69
514 519 4.553156 GCGTCCGTTCAGTTTTGTATTTGA 60.553 41.667 0.00 0.00 0.00 2.69
529 534 1.736645 CGTTCATCCAGCGTCCGTT 60.737 57.895 0.00 0.00 0.00 4.44
538 543 1.904990 TTGGATCGGCCGTTCATCCA 61.905 55.000 32.35 32.35 43.63 3.41
541 546 0.322098 TGTTTGGATCGGCCGTTCAT 60.322 50.000 31.40 17.25 40.66 2.57
542 547 0.535328 TTGTTTGGATCGGCCGTTCA 60.535 50.000 31.40 21.87 40.66 3.18
544 549 0.312729 GTTTGTTTGGATCGGCCGTT 59.687 50.000 27.15 18.42 40.66 4.44
571 576 0.442310 AACGGACGATGCATTTGTCG 59.558 50.000 20.25 14.38 39.36 4.35
624 629 3.311110 ACTTCCTTCCTGCGGCGA 61.311 61.111 12.98 0.00 0.00 5.54
627 632 1.078848 CTCCACTTCCTTCCTGCGG 60.079 63.158 0.00 0.00 0.00 5.69
727 736 1.915769 AGAGTGGGAGAGTGGCACC 60.916 63.158 15.27 5.99 0.00 5.01
792 801 4.748679 GGCAAGCAAGCGAGCACG 62.749 66.667 12.36 0.00 42.93 5.34
812 837 1.403225 CGCGTGACGTACATGACCAG 61.403 60.000 6.91 0.00 37.69 4.00
883 918 1.464189 GCTGAAGCGCGGAAAAGTTAG 60.464 52.381 8.83 0.00 0.00 2.34
1000 1553 0.333312 TTTGGGACTTGTGTGTGGGT 59.667 50.000 0.00 0.00 0.00 4.51
1034 1597 3.061687 GAGCCTGGCTAGGATGGATGG 62.062 61.905 23.44 0.00 44.35 3.51
1110 1687 0.108898 CTCCTTGTCCTGAGCACTCG 60.109 60.000 0.00 0.00 0.00 4.18
1111 1688 1.067213 GTCTCCTTGTCCTGAGCACTC 60.067 57.143 0.00 0.00 0.00 3.51
1114 1691 1.277273 CATGTCTCCTTGTCCTGAGCA 59.723 52.381 0.00 0.00 0.00 4.26
1116 1693 1.406614 GCCATGTCTCCTTGTCCTGAG 60.407 57.143 0.00 0.00 0.00 3.35
1370 1990 4.035102 AAGAGGAAGTGGCCGCCC 62.035 66.667 14.07 8.22 0.00 6.13
1371 1991 2.543067 ATCAAGAGGAAGTGGCCGCC 62.543 60.000 14.07 1.04 0.00 6.13
1372 1992 0.678048 AATCAAGAGGAAGTGGCCGC 60.678 55.000 8.71 8.71 0.00 6.53
1526 2202 4.886247 ATTTCCGTCGACTTGTTTTGAA 57.114 36.364 14.70 2.37 0.00 2.69
1538 2215 6.897259 TTATCCTTGACTTAATTTCCGTCG 57.103 37.500 0.00 0.00 0.00 5.12
1597 2274 3.311871 GCCAAACATCTCATAGTGCAGAG 59.688 47.826 0.00 0.00 0.00 3.35
1628 2312 2.949177 ACCAAACAGCCACATGTCTA 57.051 45.000 0.00 0.00 31.50 2.59
1688 2376 6.655003 ACACTATCATCACCGACTCAATTTTT 59.345 34.615 0.00 0.00 0.00 1.94
1689 2377 6.092670 CACACTATCATCACCGACTCAATTTT 59.907 38.462 0.00 0.00 0.00 1.82
1690 2378 5.582269 CACACTATCATCACCGACTCAATTT 59.418 40.000 0.00 0.00 0.00 1.82
1691 2379 5.111989 CACACTATCATCACCGACTCAATT 58.888 41.667 0.00 0.00 0.00 2.32
1692 2380 4.160439 ACACACTATCATCACCGACTCAAT 59.840 41.667 0.00 0.00 0.00 2.57
1693 2381 3.509967 ACACACTATCATCACCGACTCAA 59.490 43.478 0.00 0.00 0.00 3.02
1694 2382 3.089284 ACACACTATCATCACCGACTCA 58.911 45.455 0.00 0.00 0.00 3.41
1695 2383 3.378742 AGACACACTATCATCACCGACTC 59.621 47.826 0.00 0.00 0.00 3.36
1696 2384 3.129462 CAGACACACTATCATCACCGACT 59.871 47.826 0.00 0.00 0.00 4.18
1697 2385 3.128764 TCAGACACACTATCATCACCGAC 59.871 47.826 0.00 0.00 0.00 4.79
1698 2386 3.128764 GTCAGACACACTATCATCACCGA 59.871 47.826 0.00 0.00 0.00 4.69
1699 2387 3.119495 TGTCAGACACACTATCATCACCG 60.119 47.826 0.00 0.00 0.00 4.94
1700 2388 4.456280 TGTCAGACACACTATCATCACC 57.544 45.455 0.00 0.00 0.00 4.02
1701 2389 5.900425 AGATGTCAGACACACTATCATCAC 58.100 41.667 5.05 0.00 38.04 3.06
1702 2390 6.535963 AAGATGTCAGACACACTATCATCA 57.464 37.500 5.05 0.00 38.04 3.07
1703 2391 7.484140 TGTAAGATGTCAGACACACTATCATC 58.516 38.462 5.05 0.00 38.04 2.92
1704 2392 7.410120 TGTAAGATGTCAGACACACTATCAT 57.590 36.000 5.05 0.00 38.04 2.45
1705 2393 6.834168 TGTAAGATGTCAGACACACTATCA 57.166 37.500 5.05 8.45 38.04 2.15
1706 2394 9.973450 ATATTGTAAGATGTCAGACACACTATC 57.027 33.333 5.05 0.00 38.04 2.08
1711 2399 9.378551 GGTTTATATTGTAAGATGTCAGACACA 57.621 33.333 5.05 0.00 40.18 3.72
1712 2400 8.540492 CGGTTTATATTGTAAGATGTCAGACAC 58.460 37.037 5.05 0.11 0.00 3.67
1713 2401 8.255206 ACGGTTTATATTGTAAGATGTCAGACA 58.745 33.333 5.50 5.50 0.00 3.41
1714 2402 8.644318 ACGGTTTATATTGTAAGATGTCAGAC 57.356 34.615 0.00 0.00 0.00 3.51
1715 2403 7.924412 GGACGGTTTATATTGTAAGATGTCAGA 59.076 37.037 0.00 0.00 0.00 3.27
1716 2404 7.096189 CGGACGGTTTATATTGTAAGATGTCAG 60.096 40.741 0.00 0.00 0.00 3.51
1717 2405 6.698329 CGGACGGTTTATATTGTAAGATGTCA 59.302 38.462 0.00 0.00 0.00 3.58
1718 2406 6.919662 TCGGACGGTTTATATTGTAAGATGTC 59.080 38.462 0.00 0.00 0.00 3.06
1719 2407 6.808829 TCGGACGGTTTATATTGTAAGATGT 58.191 36.000 0.00 0.00 0.00 3.06
1720 2408 7.813148 AGATCGGACGGTTTATATTGTAAGATG 59.187 37.037 0.00 0.00 0.00 2.90
1721 2409 7.893658 AGATCGGACGGTTTATATTGTAAGAT 58.106 34.615 0.00 0.00 0.00 2.40
1722 2410 7.281040 AGATCGGACGGTTTATATTGTAAGA 57.719 36.000 0.00 0.00 0.00 2.10
1729 2417 9.798994 GTCAAATATAGATCGGACGGTTTATAT 57.201 33.333 3.13 3.13 0.00 0.86
1730 2418 7.964559 CGTCAAATATAGATCGGACGGTTTATA 59.035 37.037 13.06 0.00 42.97 0.98
1731 2419 6.805271 CGTCAAATATAGATCGGACGGTTTAT 59.195 38.462 13.06 0.00 42.97 1.40
1732 2420 6.144854 CGTCAAATATAGATCGGACGGTTTA 58.855 40.000 13.06 0.00 42.97 2.01
1733 2421 4.980434 CGTCAAATATAGATCGGACGGTTT 59.020 41.667 13.06 0.00 42.97 3.27
1734 2422 4.543692 CGTCAAATATAGATCGGACGGTT 58.456 43.478 13.06 0.00 42.97 4.44
1735 2423 4.156664 CGTCAAATATAGATCGGACGGT 57.843 45.455 13.06 0.00 42.97 4.83
1737 2425 4.414999 TCCGTCAAATATAGATCGGACG 57.585 45.455 13.64 13.64 45.37 4.79
1739 2427 5.067954 TCTGTCCGTCAAATATAGATCGGA 58.932 41.667 12.99 12.99 43.52 4.55
1740 2428 5.372547 TCTGTCCGTCAAATATAGATCGG 57.627 43.478 0.00 0.00 39.40 4.18
1741 2429 6.129062 GCTTTCTGTCCGTCAAATATAGATCG 60.129 42.308 0.00 0.00 0.00 3.69
1742 2430 6.701841 TGCTTTCTGTCCGTCAAATATAGATC 59.298 38.462 0.00 0.00 0.00 2.75
1743 2431 6.582636 TGCTTTCTGTCCGTCAAATATAGAT 58.417 36.000 0.00 0.00 0.00 1.98
1744 2432 5.972935 TGCTTTCTGTCCGTCAAATATAGA 58.027 37.500 0.00 0.00 0.00 1.98
1745 2433 6.662414 TTGCTTTCTGTCCGTCAAATATAG 57.338 37.500 0.00 0.00 0.00 1.31
1746 2434 7.624360 ATTTGCTTTCTGTCCGTCAAATATA 57.376 32.000 0.00 0.00 33.85 0.86
1747 2435 5.957842 TTTGCTTTCTGTCCGTCAAATAT 57.042 34.783 0.00 0.00 0.00 1.28
1748 2436 5.957842 ATTTGCTTTCTGTCCGTCAAATA 57.042 34.783 0.00 0.00 33.85 1.40
1749 2437 4.853924 ATTTGCTTTCTGTCCGTCAAAT 57.146 36.364 0.00 0.00 31.62 2.32
1750 2438 4.142271 ACAATTTGCTTTCTGTCCGTCAAA 60.142 37.500 0.00 0.00 0.00 2.69
1751 2439 3.380004 ACAATTTGCTTTCTGTCCGTCAA 59.620 39.130 0.00 0.00 0.00 3.18
1752 2440 2.948979 ACAATTTGCTTTCTGTCCGTCA 59.051 40.909 0.00 0.00 0.00 4.35
1753 2441 3.300009 CACAATTTGCTTTCTGTCCGTC 58.700 45.455 0.00 0.00 0.00 4.79
1754 2442 2.034558 CCACAATTTGCTTTCTGTCCGT 59.965 45.455 0.00 0.00 0.00 4.69
1755 2443 2.664916 CCACAATTTGCTTTCTGTCCG 58.335 47.619 0.00 0.00 0.00 4.79
1756 2444 2.224018 TGCCACAATTTGCTTTCTGTCC 60.224 45.455 0.00 0.00 0.00 4.02
1757 2445 3.096489 TGCCACAATTTGCTTTCTGTC 57.904 42.857 0.00 0.00 0.00 3.51
1758 2446 3.540314 TTGCCACAATTTGCTTTCTGT 57.460 38.095 0.00 0.00 0.00 3.41
1759 2447 5.427036 AAATTGCCACAATTTGCTTTCTG 57.573 34.783 15.45 0.00 0.00 3.02
1760 2448 5.823353 CAAAATTGCCACAATTTGCTTTCT 58.177 33.333 16.57 0.61 30.94 2.52
1776 2464 5.396070 GTGCGGATTTCTTTTTGCAAAATTG 59.604 36.000 24.39 19.07 33.67 2.32
1777 2465 5.065731 TGTGCGGATTTCTTTTTGCAAAATT 59.934 32.000 24.39 8.21 33.67 1.82
1778 2466 4.574013 TGTGCGGATTTCTTTTTGCAAAAT 59.426 33.333 24.39 9.96 33.67 1.82
1779 2467 3.935203 TGTGCGGATTTCTTTTTGCAAAA 59.065 34.783 20.46 20.46 33.67 2.44
1780 2468 3.525537 TGTGCGGATTTCTTTTTGCAAA 58.474 36.364 8.05 8.05 33.67 3.68
1781 2469 3.170791 TGTGCGGATTTCTTTTTGCAA 57.829 38.095 0.00 0.00 33.67 4.08
1782 2470 2.879002 TGTGCGGATTTCTTTTTGCA 57.121 40.000 0.00 0.00 0.00 4.08
1783 2471 3.578688 AGATGTGCGGATTTCTTTTTGC 58.421 40.909 0.00 0.00 0.00 3.68
1784 2472 5.051891 AGAGATGTGCGGATTTCTTTTTG 57.948 39.130 0.00 0.00 0.00 2.44
1785 2473 4.142816 CGAGAGATGTGCGGATTTCTTTTT 60.143 41.667 0.00 0.00 0.00 1.94
1786 2474 3.372206 CGAGAGATGTGCGGATTTCTTTT 59.628 43.478 0.00 0.00 0.00 2.27
1787 2475 2.932614 CGAGAGATGTGCGGATTTCTTT 59.067 45.455 0.00 0.00 0.00 2.52
1788 2476 2.166459 TCGAGAGATGTGCGGATTTCTT 59.834 45.455 0.00 0.00 33.31 2.52
1789 2477 1.751351 TCGAGAGATGTGCGGATTTCT 59.249 47.619 0.00 0.00 33.31 2.52
1790 2478 1.855360 GTCGAGAGATGTGCGGATTTC 59.145 52.381 0.00 0.00 45.19 2.17
1791 2479 1.204704 TGTCGAGAGATGTGCGGATTT 59.795 47.619 0.00 0.00 45.19 2.17
1792 2480 0.817654 TGTCGAGAGATGTGCGGATT 59.182 50.000 0.00 0.00 45.19 3.01
1793 2481 1.035923 ATGTCGAGAGATGTGCGGAT 58.964 50.000 0.00 0.00 45.19 4.18
1794 2482 0.817654 AATGTCGAGAGATGTGCGGA 59.182 50.000 0.00 0.00 45.19 5.54
1795 2483 1.325640 CAAATGTCGAGAGATGTGCGG 59.674 52.381 0.00 0.00 45.19 5.69
1796 2484 1.267235 GCAAATGTCGAGAGATGTGCG 60.267 52.381 9.21 0.00 45.19 5.34
1797 2485 1.733912 TGCAAATGTCGAGAGATGTGC 59.266 47.619 15.86 15.86 45.19 4.57
1798 2486 3.256558 TCTGCAAATGTCGAGAGATGTG 58.743 45.455 0.00 0.00 45.19 3.21
1799 2487 3.599730 TCTGCAAATGTCGAGAGATGT 57.400 42.857 0.00 0.00 45.19 3.06
1800 2488 5.177142 CCTTATCTGCAAATGTCGAGAGATG 59.823 44.000 0.00 0.00 45.19 2.90
1801 2489 5.295950 CCTTATCTGCAAATGTCGAGAGAT 58.704 41.667 0.00 0.00 45.19 2.75
1802 2490 4.686972 CCTTATCTGCAAATGTCGAGAGA 58.313 43.478 0.00 0.00 38.16 3.10
1803 2491 3.247173 GCCTTATCTGCAAATGTCGAGAG 59.753 47.826 0.00 0.00 0.00 3.20
1804 2492 3.198068 GCCTTATCTGCAAATGTCGAGA 58.802 45.455 0.00 0.00 0.00 4.04
1805 2493 2.938451 TGCCTTATCTGCAAATGTCGAG 59.062 45.455 0.00 0.00 35.40 4.04
1806 2494 2.984562 TGCCTTATCTGCAAATGTCGA 58.015 42.857 0.00 0.00 35.40 4.20
1807 2495 3.976793 ATGCCTTATCTGCAAATGTCG 57.023 42.857 0.00 0.00 42.92 4.35
1808 2496 4.500375 GGGAATGCCTTATCTGCAAATGTC 60.500 45.833 0.00 0.00 42.92 3.06
1809 2497 3.385755 GGGAATGCCTTATCTGCAAATGT 59.614 43.478 0.00 0.00 42.92 2.71
1810 2498 3.640029 AGGGAATGCCTTATCTGCAAATG 59.360 43.478 0.00 0.00 42.92 2.32
1811 2499 3.893813 GAGGGAATGCCTTATCTGCAAAT 59.106 43.478 0.00 0.00 42.92 2.32
1812 2500 3.290710 GAGGGAATGCCTTATCTGCAAA 58.709 45.455 0.00 0.00 42.92 3.68
1813 2501 2.746142 CGAGGGAATGCCTTATCTGCAA 60.746 50.000 0.00 0.00 42.92 4.08
1814 2502 1.202687 CGAGGGAATGCCTTATCTGCA 60.203 52.381 0.00 0.00 43.97 4.41
1815 2503 1.202698 ACGAGGGAATGCCTTATCTGC 60.203 52.381 0.00 0.00 0.00 4.26
1816 2504 2.918712 ACGAGGGAATGCCTTATCTG 57.081 50.000 0.00 0.00 0.00 2.90
1817 2505 2.771943 TGAACGAGGGAATGCCTTATCT 59.228 45.455 0.00 0.00 0.00 1.98
1818 2506 3.194005 TGAACGAGGGAATGCCTTATC 57.806 47.619 0.00 0.00 0.00 1.75
1819 2507 3.496870 GGATGAACGAGGGAATGCCTTAT 60.497 47.826 0.00 0.00 0.00 1.73
1820 2508 2.158813 GGATGAACGAGGGAATGCCTTA 60.159 50.000 0.00 0.00 0.00 2.69
1821 2509 1.408822 GGATGAACGAGGGAATGCCTT 60.409 52.381 0.00 0.00 0.00 4.35
1822 2510 0.181350 GGATGAACGAGGGAATGCCT 59.819 55.000 0.00 0.00 0.00 4.75
1823 2511 0.181350 AGGATGAACGAGGGAATGCC 59.819 55.000 0.00 0.00 0.00 4.40
1824 2512 2.044123 AAGGATGAACGAGGGAATGC 57.956 50.000 0.00 0.00 0.00 3.56
1825 2513 5.220710 AGATAAGGATGAACGAGGGAATG 57.779 43.478 0.00 0.00 0.00 2.67
1826 2514 5.221742 GGAAGATAAGGATGAACGAGGGAAT 60.222 44.000 0.00 0.00 0.00 3.01
1827 2515 4.101119 GGAAGATAAGGATGAACGAGGGAA 59.899 45.833 0.00 0.00 0.00 3.97
1828 2516 3.641906 GGAAGATAAGGATGAACGAGGGA 59.358 47.826 0.00 0.00 0.00 4.20
1829 2517 3.388024 TGGAAGATAAGGATGAACGAGGG 59.612 47.826 0.00 0.00 0.00 4.30
1830 2518 4.141937 TGTGGAAGATAAGGATGAACGAGG 60.142 45.833 0.00 0.00 0.00 4.63
1831 2519 5.011090 TGTGGAAGATAAGGATGAACGAG 57.989 43.478 0.00 0.00 0.00 4.18
1832 2520 5.175859 GTTGTGGAAGATAAGGATGAACGA 58.824 41.667 0.00 0.00 0.00 3.85
1833 2521 4.332819 GGTTGTGGAAGATAAGGATGAACG 59.667 45.833 0.00 0.00 0.00 3.95
1834 2522 5.501156 AGGTTGTGGAAGATAAGGATGAAC 58.499 41.667 0.00 0.00 0.00 3.18
1835 2523 5.250543 TGAGGTTGTGGAAGATAAGGATGAA 59.749 40.000 0.00 0.00 0.00 2.57
1836 2524 4.782691 TGAGGTTGTGGAAGATAAGGATGA 59.217 41.667 0.00 0.00 0.00 2.92
1837 2525 5.102953 TGAGGTTGTGGAAGATAAGGATG 57.897 43.478 0.00 0.00 0.00 3.51
1838 2526 5.983333 ATGAGGTTGTGGAAGATAAGGAT 57.017 39.130 0.00 0.00 0.00 3.24
1839 2527 5.500234 CAATGAGGTTGTGGAAGATAAGGA 58.500 41.667 0.00 0.00 33.01 3.36
1840 2528 5.824904 CAATGAGGTTGTGGAAGATAAGG 57.175 43.478 0.00 0.00 33.01 2.69
1916 2604 4.570663 GAGGATGGACGACGCCGG 62.571 72.222 0.00 0.00 40.78 6.13
1917 2605 3.138930 ATGAGGATGGACGACGCCG 62.139 63.158 0.00 0.00 42.50 6.46
1918 2606 1.592669 CATGAGGATGGACGACGCC 60.593 63.158 0.00 0.00 0.00 5.68
1919 2607 2.240500 GCATGAGGATGGACGACGC 61.241 63.158 0.00 0.00 0.00 5.19
1920 2608 1.592669 GGCATGAGGATGGACGACG 60.593 63.158 0.00 0.00 0.00 5.12
1921 2609 0.249657 GAGGCATGAGGATGGACGAC 60.250 60.000 0.00 0.00 0.00 4.34
1922 2610 1.402896 GGAGGCATGAGGATGGACGA 61.403 60.000 0.00 0.00 0.00 4.20
1923 2611 1.070445 GGAGGCATGAGGATGGACG 59.930 63.158 0.00 0.00 0.00 4.79
1924 2612 1.070445 CGGAGGCATGAGGATGGAC 59.930 63.158 0.00 0.00 0.00 4.02
1925 2613 2.811514 GCGGAGGCATGAGGATGGA 61.812 63.158 0.00 0.00 39.62 3.41
1926 2614 2.281345 GCGGAGGCATGAGGATGG 60.281 66.667 0.00 0.00 39.62 3.51
1927 2615 1.301558 GAGCGGAGGCATGAGGATG 60.302 63.158 0.00 0.00 43.41 3.51
1928 2616 1.756408 CTGAGCGGAGGCATGAGGAT 61.756 60.000 0.00 0.00 43.41 3.24
1929 2617 2.364186 TGAGCGGAGGCATGAGGA 60.364 61.111 0.00 0.00 43.41 3.71
1930 2618 2.108566 CTGAGCGGAGGCATGAGG 59.891 66.667 0.00 0.00 43.41 3.86
1931 2619 1.227205 GACTGAGCGGAGGCATGAG 60.227 63.158 0.00 0.00 43.41 2.90
1932 2620 2.725312 GGACTGAGCGGAGGCATGA 61.725 63.158 0.00 0.00 43.41 3.07
1933 2621 2.202987 GGACTGAGCGGAGGCATG 60.203 66.667 0.00 0.00 43.41 4.06
1934 2622 3.842923 CGGACTGAGCGGAGGCAT 61.843 66.667 0.00 0.00 43.41 4.40
1936 2624 3.492311 GATCGGACTGAGCGGAGGC 62.492 68.421 0.00 0.00 40.37 4.70
1937 2625 1.459455 ATGATCGGACTGAGCGGAGG 61.459 60.000 0.00 0.00 35.12 4.30
1938 2626 0.039617 GATGATCGGACTGAGCGGAG 60.040 60.000 0.00 0.00 35.12 4.63
1939 2627 0.751643 TGATGATCGGACTGAGCGGA 60.752 55.000 0.00 0.00 35.12 5.54
1940 2628 0.103026 TTGATGATCGGACTGAGCGG 59.897 55.000 0.00 0.00 35.12 5.52
1941 2629 2.057316 GATTGATGATCGGACTGAGCG 58.943 52.381 0.00 0.00 35.12 5.03
1942 2630 2.799412 GTGATTGATGATCGGACTGAGC 59.201 50.000 0.00 0.00 37.60 4.26
1943 2631 3.181472 TGGTGATTGATGATCGGACTGAG 60.181 47.826 0.00 0.00 37.60 3.35
1944 2632 2.765699 TGGTGATTGATGATCGGACTGA 59.234 45.455 0.00 0.00 37.60 3.41
1945 2633 2.868583 GTGGTGATTGATGATCGGACTG 59.131 50.000 0.00 0.00 37.60 3.51
1946 2634 2.158900 GGTGGTGATTGATGATCGGACT 60.159 50.000 0.00 0.00 37.60 3.85
1947 2635 2.213499 GGTGGTGATTGATGATCGGAC 58.787 52.381 0.00 0.00 37.60 4.79
1948 2636 1.836802 TGGTGGTGATTGATGATCGGA 59.163 47.619 0.00 0.00 37.60 4.55
1949 2637 1.942657 GTGGTGGTGATTGATGATCGG 59.057 52.381 0.00 0.00 37.60 4.18
1950 2638 2.352651 GTGTGGTGGTGATTGATGATCG 59.647 50.000 0.00 0.00 37.60 3.69
1951 2639 2.684881 GGTGTGGTGGTGATTGATGATC 59.315 50.000 0.00 0.00 35.21 2.92
1952 2640 2.621407 GGGTGTGGTGGTGATTGATGAT 60.621 50.000 0.00 0.00 0.00 2.45
1953 2641 1.271871 GGGTGTGGTGGTGATTGATGA 60.272 52.381 0.00 0.00 0.00 2.92
1954 2642 1.176527 GGGTGTGGTGGTGATTGATG 58.823 55.000 0.00 0.00 0.00 3.07
1955 2643 0.039618 GGGGTGTGGTGGTGATTGAT 59.960 55.000 0.00 0.00 0.00 2.57
1956 2644 1.356494 TGGGGTGTGGTGGTGATTGA 61.356 55.000 0.00 0.00 0.00 2.57
1957 2645 0.251742 ATGGGGTGTGGTGGTGATTG 60.252 55.000 0.00 0.00 0.00 2.67
1958 2646 0.486879 AATGGGGTGTGGTGGTGATT 59.513 50.000 0.00 0.00 0.00 2.57
1959 2647 0.039618 GAATGGGGTGTGGTGGTGAT 59.960 55.000 0.00 0.00 0.00 3.06
1960 2648 1.458486 GAATGGGGTGTGGTGGTGA 59.542 57.895 0.00 0.00 0.00 4.02
1961 2649 1.606313 GGAATGGGGTGTGGTGGTG 60.606 63.158 0.00 0.00 0.00 4.17
1962 2650 1.778383 AGGAATGGGGTGTGGTGGT 60.778 57.895 0.00 0.00 0.00 4.16
1963 2651 1.000896 GAGGAATGGGGTGTGGTGG 60.001 63.158 0.00 0.00 0.00 4.61
1964 2652 1.000896 GGAGGAATGGGGTGTGGTG 60.001 63.158 0.00 0.00 0.00 4.17
1965 2653 1.151587 AGGAGGAATGGGGTGTGGT 60.152 57.895 0.00 0.00 0.00 4.16
1966 2654 1.207488 TGAGGAGGAATGGGGTGTGG 61.207 60.000 0.00 0.00 0.00 4.17
1967 2655 0.035056 GTGAGGAGGAATGGGGTGTG 60.035 60.000 0.00 0.00 0.00 3.82
1968 2656 1.208165 GGTGAGGAGGAATGGGGTGT 61.208 60.000 0.00 0.00 0.00 4.16
1969 2657 0.916358 AGGTGAGGAGGAATGGGGTG 60.916 60.000 0.00 0.00 0.00 4.61
1970 2658 0.178831 AAGGTGAGGAGGAATGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
1971 2659 1.893315 TAAGGTGAGGAGGAATGGGG 58.107 55.000 0.00 0.00 0.00 4.96
1972 2660 3.321950 AGATAAGGTGAGGAGGAATGGG 58.678 50.000 0.00 0.00 0.00 4.00
1973 2661 4.230455 AGAGATAAGGTGAGGAGGAATGG 58.770 47.826 0.00 0.00 0.00 3.16
1974 2662 5.147032 AGAGAGATAAGGTGAGGAGGAATG 58.853 45.833 0.00 0.00 0.00 2.67
1975 2663 5.417170 AGAGAGATAAGGTGAGGAGGAAT 57.583 43.478 0.00 0.00 0.00 3.01
1976 2664 4.890499 AGAGAGATAAGGTGAGGAGGAA 57.110 45.455 0.00 0.00 0.00 3.36
1977 2665 4.890499 AAGAGAGATAAGGTGAGGAGGA 57.110 45.455 0.00 0.00 0.00 3.71
1978 2666 5.208121 AGAAAGAGAGATAAGGTGAGGAGG 58.792 45.833 0.00 0.00 0.00 4.30
1979 2667 5.008613 CGAGAAAGAGAGATAAGGTGAGGAG 59.991 48.000 0.00 0.00 0.00 3.69
1980 2668 4.884744 CGAGAAAGAGAGATAAGGTGAGGA 59.115 45.833 0.00 0.00 0.00 3.71
1981 2669 4.884744 TCGAGAAAGAGAGATAAGGTGAGG 59.115 45.833 0.00 0.00 0.00 3.86
1982 2670 5.820423 TCTCGAGAAAGAGAGATAAGGTGAG 59.180 44.000 14.01 0.00 41.86 3.51
1983 2671 5.746284 TCTCGAGAAAGAGAGATAAGGTGA 58.254 41.667 14.01 0.00 41.86 4.02
1994 2682 8.934507 AAAACTAATGGTATCTCGAGAAAGAG 57.065 34.615 20.91 11.83 39.52 2.85
1997 2685 9.932207 TGTAAAAACTAATGGTATCTCGAGAAA 57.068 29.630 20.91 6.08 0.00 2.52
1998 2686 9.362539 GTGTAAAAACTAATGGTATCTCGAGAA 57.637 33.333 20.91 2.56 0.00 2.87
1999 2687 8.525316 TGTGTAAAAACTAATGGTATCTCGAGA 58.475 33.333 19.19 19.19 0.00 4.04
2000 2688 8.697846 TGTGTAAAAACTAATGGTATCTCGAG 57.302 34.615 5.93 5.93 0.00 4.04
2001 2689 9.093970 CATGTGTAAAAACTAATGGTATCTCGA 57.906 33.333 0.00 0.00 0.00 4.04
2002 2690 8.335356 CCATGTGTAAAAACTAATGGTATCTCG 58.665 37.037 0.00 0.00 0.00 4.04
2003 2691 8.621286 CCCATGTGTAAAAACTAATGGTATCTC 58.379 37.037 0.00 0.00 0.00 2.75
2004 2692 8.113462 ACCCATGTGTAAAAACTAATGGTATCT 58.887 33.333 0.00 0.00 0.00 1.98
2005 2693 8.288689 ACCCATGTGTAAAAACTAATGGTATC 57.711 34.615 0.00 0.00 0.00 2.24
2006 2694 7.891183 TGACCCATGTGTAAAAACTAATGGTAT 59.109 33.333 0.00 0.00 0.00 2.73
2007 2695 7.232188 TGACCCATGTGTAAAAACTAATGGTA 58.768 34.615 0.00 0.00 0.00 3.25
2008 2696 6.071984 TGACCCATGTGTAAAAACTAATGGT 58.928 36.000 0.00 0.00 0.00 3.55
2009 2697 6.582677 TGACCCATGTGTAAAAACTAATGG 57.417 37.500 0.00 0.00 0.00 3.16
2010 2698 8.303156 TGATTGACCCATGTGTAAAAACTAATG 58.697 33.333 0.00 0.00 0.00 1.90
2011 2699 8.303876 GTGATTGACCCATGTGTAAAAACTAAT 58.696 33.333 0.00 0.00 0.00 1.73
2012 2700 7.285629 TGTGATTGACCCATGTGTAAAAACTAA 59.714 33.333 0.00 0.00 0.00 2.24
2013 2701 6.773200 TGTGATTGACCCATGTGTAAAAACTA 59.227 34.615 0.00 0.00 0.00 2.24
2014 2702 5.596361 TGTGATTGACCCATGTGTAAAAACT 59.404 36.000 0.00 0.00 0.00 2.66
2015 2703 5.837437 TGTGATTGACCCATGTGTAAAAAC 58.163 37.500 0.00 0.00 0.00 2.43
2016 2704 6.127338 TGTTGTGATTGACCCATGTGTAAAAA 60.127 34.615 0.00 0.00 0.00 1.94
2017 2705 5.360999 TGTTGTGATTGACCCATGTGTAAAA 59.639 36.000 0.00 0.00 0.00 1.52
2018 2706 4.889995 TGTTGTGATTGACCCATGTGTAAA 59.110 37.500 0.00 0.00 0.00 2.01
2019 2707 4.464947 TGTTGTGATTGACCCATGTGTAA 58.535 39.130 0.00 0.00 0.00 2.41
2020 2708 4.071423 CTGTTGTGATTGACCCATGTGTA 58.929 43.478 0.00 0.00 0.00 2.90
2021 2709 2.886523 CTGTTGTGATTGACCCATGTGT 59.113 45.455 0.00 0.00 0.00 3.72
2022 2710 2.229543 CCTGTTGTGATTGACCCATGTG 59.770 50.000 0.00 0.00 0.00 3.21
2023 2711 2.158475 ACCTGTTGTGATTGACCCATGT 60.158 45.455 0.00 0.00 0.00 3.21
2024 2712 2.517959 ACCTGTTGTGATTGACCCATG 58.482 47.619 0.00 0.00 0.00 3.66
2025 2713 2.978156 ACCTGTTGTGATTGACCCAT 57.022 45.000 0.00 0.00 0.00 4.00
2055 2743 5.806654 AACACACCCTAAGATGCATTTTT 57.193 34.783 7.89 5.30 0.00 1.94
2056 2744 5.511202 CCAAACACACCCTAAGATGCATTTT 60.511 40.000 7.70 7.70 0.00 1.82
2057 2745 4.021192 CCAAACACACCCTAAGATGCATTT 60.021 41.667 0.00 0.00 0.00 2.32
2058 2746 3.511146 CCAAACACACCCTAAGATGCATT 59.489 43.478 0.00 0.00 0.00 3.56
2059 2747 3.091545 CCAAACACACCCTAAGATGCAT 58.908 45.455 0.00 0.00 0.00 3.96
2060 2748 2.107378 TCCAAACACACCCTAAGATGCA 59.893 45.455 0.00 0.00 0.00 3.96
2061 2749 2.790433 TCCAAACACACCCTAAGATGC 58.210 47.619 0.00 0.00 0.00 3.91
2062 2750 3.129287 GCATCCAAACACACCCTAAGATG 59.871 47.826 0.00 0.00 34.40 2.90
2063 2751 3.245229 TGCATCCAAACACACCCTAAGAT 60.245 43.478 0.00 0.00 0.00 2.40
2064 2752 2.107378 TGCATCCAAACACACCCTAAGA 59.893 45.455 0.00 0.00 0.00 2.10
2141 2829 5.151454 TCATCCAAACACCCCAAAGTATTT 58.849 37.500 0.00 0.00 40.26 1.40
2142 2830 4.746466 TCATCCAAACACCCCAAAGTATT 58.254 39.130 0.00 0.00 0.00 1.89
2153 2841 6.363357 GTGCAGTATTTCTTTCATCCAAACAC 59.637 38.462 0.00 0.00 0.00 3.32
2240 2928 4.319549 GCTCAGTTTAGAAAAAGGTGGTCG 60.320 45.833 0.00 0.00 0.00 4.79
2242 2930 3.889538 GGCTCAGTTTAGAAAAAGGTGGT 59.110 43.478 0.00 0.00 0.00 4.16
2243 2931 3.058224 CGGCTCAGTTTAGAAAAAGGTGG 60.058 47.826 0.00 0.00 0.00 4.61
2247 2935 5.230942 TCTCTCGGCTCAGTTTAGAAAAAG 58.769 41.667 0.00 0.00 0.00 2.27
2270 2958 0.253327 GAGTGGGAGGCCTTCGATTT 59.747 55.000 6.77 0.00 0.00 2.17
2275 2963 1.306568 AGAGGAGTGGGAGGCCTTC 60.307 63.158 6.77 3.67 30.70 3.46
2343 4739 8.594550 TCACCTATCCTTAAATGCCTAGTAATC 58.405 37.037 0.00 0.00 0.00 1.75
2362 4758 4.023707 GCGAAATGCAAGCTAATCACCTAT 60.024 41.667 0.00 0.00 45.45 2.57
2364 4760 2.098117 GCGAAATGCAAGCTAATCACCT 59.902 45.455 0.00 0.00 45.45 4.00
2391 4787 2.353704 CGGCTGGAAGAACATACTCACA 60.354 50.000 0.00 0.00 34.07 3.58
2414 4812 5.519566 AGTCATCAGTTAGACTACTACGACG 59.480 44.000 0.00 0.00 42.92 5.12
2435 4833 6.366332 CGATCATGTAACCTAAATGCCTAGTC 59.634 42.308 0.00 0.00 0.00 2.59
2488 4887 6.205270 GTCTACAGAGTATAACTACCTCCTGC 59.795 46.154 0.00 0.00 0.00 4.85
2518 4917 2.091610 TCTCTAGGATGCTAGGTGCTGT 60.092 50.000 19.88 0.00 43.37 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.