Multiple sequence alignment - TraesCS6A01G063800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G063800 chr6A 100.000 2261 0 0 1 2261 34040600 34038340 0.000000e+00 4176.0
1 TraesCS6A01G063800 chr6A 79.971 684 77 29 806 1472 34071435 34070795 1.230000e-122 449.0
2 TraesCS6A01G063800 chr6D 85.738 1220 78 35 423 1600 28634054 28635219 0.000000e+00 1201.0
3 TraesCS6A01G063800 chr6D 92.147 624 34 9 1638 2261 28642228 28642836 0.000000e+00 867.0
4 TraesCS6A01G063800 chr6D 78.640 1044 109 44 669 1639 28628183 28629185 2.500000e-164 588.0
5 TraesCS6A01G063800 chr6D 83.029 383 41 10 68 426 27034600 27034218 2.170000e-85 326.0
6 TraesCS6A01G063800 chr6B 83.058 968 64 32 446 1364 62146957 62146041 0.000000e+00 787.0
7 TraesCS6A01G063800 chr6B 81.176 680 81 27 1000 1637 62213394 62212720 9.320000e-139 503.0
8 TraesCS6A01G063800 chr6B 83.104 509 48 19 1000 1476 62179043 62178541 1.600000e-116 429.0
9 TraesCS6A01G063800 chr6B 79.087 679 85 26 1001 1635 62154925 62154260 4.490000e-112 414.0
10 TraesCS6A01G063800 chr6B 89.899 99 4 3 1547 1639 62178385 62178287 3.050000e-24 122.0
11 TraesCS6A01G063800 chr6B 85.039 127 9 4 672 798 62179301 62179185 1.100000e-23 121.0
12 TraesCS6A01G063800 chr6B 82.906 117 7 6 672 787 62213653 62213549 2.390000e-15 93.5
13 TraesCS6A01G063800 chr7B 85.811 444 41 10 1 423 7072727 7072285 3.420000e-123 451.0
14 TraesCS6A01G063800 chr7B 84.922 451 40 8 1 423 7089200 7089650 4.460000e-117 431.0
15 TraesCS6A01G063800 chr5A 87.983 233 23 5 198 427 445386251 445386481 1.030000e-68 270.0
16 TraesCS6A01G063800 chr2B 81.905 105 16 3 323 425 2645207 2645310 4.000000e-13 86.1
17 TraesCS6A01G063800 chr4A 100.000 30 0 0 1837 1866 113329813 113329784 3.140000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G063800 chr6A 34038340 34040600 2260 True 4176.00 4176 100.000 1 2261 1 chr6A.!!$R1 2260
1 TraesCS6A01G063800 chr6A 34070795 34071435 640 True 449.00 449 79.971 806 1472 1 chr6A.!!$R2 666
2 TraesCS6A01G063800 chr6D 28634054 28635219 1165 False 1201.00 1201 85.738 423 1600 1 chr6D.!!$F2 1177
3 TraesCS6A01G063800 chr6D 28642228 28642836 608 False 867.00 867 92.147 1638 2261 1 chr6D.!!$F3 623
4 TraesCS6A01G063800 chr6D 28628183 28629185 1002 False 588.00 588 78.640 669 1639 1 chr6D.!!$F1 970
5 TraesCS6A01G063800 chr6B 62146041 62146957 916 True 787.00 787 83.058 446 1364 1 chr6B.!!$R1 918
6 TraesCS6A01G063800 chr6B 62154260 62154925 665 True 414.00 414 79.087 1001 1635 1 chr6B.!!$R2 634
7 TraesCS6A01G063800 chr6B 62212720 62213653 933 True 298.25 503 82.041 672 1637 2 chr6B.!!$R4 965
8 TraesCS6A01G063800 chr6B 62178287 62179301 1014 True 224.00 429 86.014 672 1639 3 chr6B.!!$R3 967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 905 0.036875 CTCAACTCAACCCTCCCACC 59.963 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2357 1.463444 CCCACGACATTTCTTTCGACC 59.537 52.381 0.0 0.0 38.63 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.123157 CGATTGCCATCAAGATCCTCT 57.877 47.619 0.00 0.00 35.37 3.69
21 22 3.065655 CGATTGCCATCAAGATCCTCTC 58.934 50.000 0.00 0.00 35.37 3.20
22 23 3.244146 CGATTGCCATCAAGATCCTCTCT 60.244 47.826 0.00 0.00 35.37 3.10
23 24 3.555527 TTGCCATCAAGATCCTCTCTG 57.444 47.619 0.00 0.00 33.29 3.35
24 25 1.767088 TGCCATCAAGATCCTCTCTGG 59.233 52.381 0.00 0.00 33.29 3.86
25 26 5.435016 ATTGCCATCAAGATCCTCTCTGGA 61.435 45.833 3.78 0.00 41.64 3.86
26 27 7.211719 ATTGCCATCAAGATCCTCTCTGGAG 62.212 48.000 3.78 0.00 41.11 3.86
35 36 3.309052 CTCTCTGGAGGCATCATGC 57.691 57.895 0.00 0.00 44.08 4.06
44 45 3.285215 GCATCATGCCGCTCTGGG 61.285 66.667 0.00 0.00 37.42 4.45
45 46 2.507452 CATCATGCCGCTCTGGGA 59.493 61.111 0.00 0.00 45.08 4.37
46 47 1.890979 CATCATGCCGCTCTGGGAC 60.891 63.158 0.00 0.00 43.03 4.46
47 48 3.451556 ATCATGCCGCTCTGGGACG 62.452 63.158 0.00 0.00 43.03 4.79
52 53 4.436998 CCGCTCTGGGACGGTGTC 62.437 72.222 2.78 0.00 44.46 3.67
53 54 4.778415 CGCTCTGGGACGGTGTCG 62.778 72.222 0.00 0.00 43.02 4.35
64 65 2.813908 GGTGTCGTCATCACCGCC 60.814 66.667 0.00 0.00 44.34 6.13
65 66 2.261671 GTGTCGTCATCACCGCCT 59.738 61.111 0.00 0.00 0.00 5.52
66 67 1.374252 GTGTCGTCATCACCGCCTT 60.374 57.895 0.00 0.00 0.00 4.35
67 68 1.080093 TGTCGTCATCACCGCCTTC 60.080 57.895 0.00 0.00 0.00 3.46
68 69 2.158959 GTCGTCATCACCGCCTTCG 61.159 63.158 0.00 0.00 0.00 3.79
69 70 2.180769 CGTCATCACCGCCTTCGA 59.819 61.111 0.00 0.00 38.10 3.71
70 71 1.226974 CGTCATCACCGCCTTCGAT 60.227 57.895 0.00 0.00 38.10 3.59
71 72 1.209275 CGTCATCACCGCCTTCGATC 61.209 60.000 0.00 0.00 38.10 3.69
72 73 0.103208 GTCATCACCGCCTTCGATCT 59.897 55.000 0.00 0.00 38.10 2.75
73 74 0.824109 TCATCACCGCCTTCGATCTT 59.176 50.000 0.00 0.00 38.10 2.40
74 75 0.933097 CATCACCGCCTTCGATCTTG 59.067 55.000 0.00 0.00 38.10 3.02
75 76 0.537188 ATCACCGCCTTCGATCTTGT 59.463 50.000 0.00 0.00 38.10 3.16
76 77 0.108804 TCACCGCCTTCGATCTTGTC 60.109 55.000 0.00 0.00 38.10 3.18
77 78 1.084370 CACCGCCTTCGATCTTGTCC 61.084 60.000 0.00 0.00 38.10 4.02
78 79 1.218047 CCGCCTTCGATCTTGTCCA 59.782 57.895 0.00 0.00 38.10 4.02
79 80 0.807667 CCGCCTTCGATCTTGTCCAG 60.808 60.000 0.00 0.00 38.10 3.86
80 81 0.807667 CGCCTTCGATCTTGTCCAGG 60.808 60.000 0.00 0.00 38.10 4.45
81 82 1.092345 GCCTTCGATCTTGTCCAGGC 61.092 60.000 4.85 4.85 40.67 4.85
82 83 0.462759 CCTTCGATCTTGTCCAGGCC 60.463 60.000 0.00 0.00 0.00 5.19
83 84 0.807667 CTTCGATCTTGTCCAGGCCG 60.808 60.000 0.00 0.00 0.00 6.13
84 85 1.254975 TTCGATCTTGTCCAGGCCGA 61.255 55.000 0.00 0.00 0.00 5.54
85 86 1.519455 CGATCTTGTCCAGGCCGAC 60.519 63.158 0.00 0.00 0.00 4.79
86 87 1.519455 GATCTTGTCCAGGCCGACG 60.519 63.158 0.00 0.00 35.40 5.12
87 88 2.227089 GATCTTGTCCAGGCCGACGT 62.227 60.000 0.00 0.00 35.40 4.34
88 89 2.227089 ATCTTGTCCAGGCCGACGTC 62.227 60.000 5.18 5.18 35.40 4.34
89 90 4.351938 TTGTCCAGGCCGACGTCG 62.352 66.667 30.33 30.33 35.40 5.12
111 112 4.152625 CGCCTTCCGCTCGCTTTG 62.153 66.667 0.00 0.00 34.21 2.77
112 113 2.742372 GCCTTCCGCTCGCTTTGA 60.742 61.111 0.00 0.00 0.00 2.69
113 114 3.028366 GCCTTCCGCTCGCTTTGAC 62.028 63.158 0.00 0.00 0.00 3.18
114 115 1.667830 CCTTCCGCTCGCTTTGACA 60.668 57.895 0.00 0.00 0.00 3.58
115 116 1.630244 CCTTCCGCTCGCTTTGACAG 61.630 60.000 0.00 0.00 0.00 3.51
116 117 2.233007 CTTCCGCTCGCTTTGACAGC 62.233 60.000 0.00 0.00 46.31 4.40
123 124 2.863153 GCTTTGACAGCGCGACAT 59.137 55.556 12.10 0.00 39.29 3.06
124 125 1.225854 GCTTTGACAGCGCGACATC 60.226 57.895 12.10 3.22 39.29 3.06
125 126 1.421485 CTTTGACAGCGCGACATCC 59.579 57.895 12.10 0.00 0.00 3.51
126 127 1.005037 TTTGACAGCGCGACATCCT 60.005 52.632 12.10 0.00 0.00 3.24
127 128 0.602638 TTTGACAGCGCGACATCCTT 60.603 50.000 12.10 0.00 0.00 3.36
128 129 1.014044 TTGACAGCGCGACATCCTTC 61.014 55.000 12.10 0.00 0.00 3.46
129 130 2.125512 ACAGCGCGACATCCTTCC 60.126 61.111 12.10 0.00 0.00 3.46
130 131 3.257561 CAGCGCGACATCCTTCCG 61.258 66.667 12.10 0.00 0.00 4.30
131 132 4.514577 AGCGCGACATCCTTCCGG 62.515 66.667 12.10 0.00 0.00 5.14
133 134 4.514577 CGCGACATCCTTCCGGCT 62.515 66.667 0.00 0.00 0.00 5.52
134 135 2.125106 GCGACATCCTTCCGGCTT 60.125 61.111 0.00 0.00 0.00 4.35
135 136 1.745489 GCGACATCCTTCCGGCTTT 60.745 57.895 0.00 0.00 0.00 3.51
136 137 1.982073 GCGACATCCTTCCGGCTTTG 61.982 60.000 0.00 0.00 0.00 2.77
137 138 0.673644 CGACATCCTTCCGGCTTTGT 60.674 55.000 0.00 0.00 0.00 2.83
138 139 1.534729 GACATCCTTCCGGCTTTGTT 58.465 50.000 0.00 0.00 0.00 2.83
139 140 1.468914 GACATCCTTCCGGCTTTGTTC 59.531 52.381 0.00 0.00 0.00 3.18
140 141 1.073923 ACATCCTTCCGGCTTTGTTCT 59.926 47.619 0.00 0.00 0.00 3.01
141 142 1.470098 CATCCTTCCGGCTTTGTTCTG 59.530 52.381 0.00 0.00 0.00 3.02
142 143 0.889186 TCCTTCCGGCTTTGTTCTGC 60.889 55.000 0.00 0.00 0.00 4.26
143 144 1.172180 CCTTCCGGCTTTGTTCTGCA 61.172 55.000 0.00 0.00 0.00 4.41
144 145 0.667993 CTTCCGGCTTTGTTCTGCAA 59.332 50.000 0.00 0.00 34.87 4.08
145 146 0.383949 TTCCGGCTTTGTTCTGCAAC 59.616 50.000 0.00 0.00 36.72 4.17
146 147 1.370414 CCGGCTTTGTTCTGCAACG 60.370 57.895 0.00 0.00 36.72 4.10
148 149 3.922175 GCTTTGTTCTGCAACGCC 58.078 55.556 0.00 0.00 43.81 5.68
149 150 1.065600 GCTTTGTTCTGCAACGCCA 59.934 52.632 0.00 0.00 43.81 5.69
150 151 0.318955 GCTTTGTTCTGCAACGCCAT 60.319 50.000 0.00 0.00 43.81 4.40
151 152 1.869342 GCTTTGTTCTGCAACGCCATT 60.869 47.619 0.00 0.00 43.81 3.16
152 153 1.788308 CTTTGTTCTGCAACGCCATTG 59.212 47.619 0.00 0.00 41.69 2.82
159 160 2.259204 CAACGCCATTGCCAGTGG 59.741 61.111 4.20 4.20 39.80 4.00
183 184 4.785453 GAGGCAAGCGGGTCCTGG 62.785 72.222 0.00 0.00 0.00 4.45
187 188 4.020617 CAAGCGGGTCCTGGCTCA 62.021 66.667 8.18 0.00 38.88 4.26
188 189 3.011517 AAGCGGGTCCTGGCTCAT 61.012 61.111 8.18 0.00 38.88 2.90
189 190 3.036429 AAGCGGGTCCTGGCTCATC 62.036 63.158 8.18 0.00 38.88 2.92
190 191 4.899239 GCGGGTCCTGGCTCATCG 62.899 72.222 0.00 0.00 0.00 3.84
191 192 4.227134 CGGGTCCTGGCTCATCGG 62.227 72.222 0.00 0.00 0.00 4.18
192 193 3.866582 GGGTCCTGGCTCATCGGG 61.867 72.222 0.00 0.00 34.52 5.14
193 194 4.554036 GGTCCTGGCTCATCGGGC 62.554 72.222 0.00 0.00 33.26 6.13
194 195 4.899239 GTCCTGGCTCATCGGGCG 62.899 72.222 0.00 0.00 33.26 6.13
197 198 4.161295 CTGGCTCATCGGGCGGAA 62.161 66.667 0.00 0.00 40.05 4.30
198 199 4.161295 TGGCTCATCGGGCGGAAG 62.161 66.667 0.00 0.00 34.31 3.46
210 211 4.560856 CGGAAGCTCGCCTCCTCG 62.561 72.222 5.13 0.00 0.00 4.63
211 212 3.141488 GGAAGCTCGCCTCCTCGA 61.141 66.667 0.00 0.00 36.94 4.04
212 213 2.103340 GAAGCTCGCCTCCTCGAC 59.897 66.667 0.00 0.00 34.46 4.20
213 214 2.676822 AAGCTCGCCTCCTCGACA 60.677 61.111 0.00 0.00 34.46 4.35
214 215 2.214181 GAAGCTCGCCTCCTCGACAA 62.214 60.000 0.00 0.00 34.46 3.18
215 216 1.608717 AAGCTCGCCTCCTCGACAAT 61.609 55.000 0.00 0.00 34.46 2.71
216 217 1.590259 GCTCGCCTCCTCGACAATC 60.590 63.158 0.00 0.00 34.46 2.67
217 218 1.066587 CTCGCCTCCTCGACAATCC 59.933 63.158 0.00 0.00 34.46 3.01
218 219 2.278857 CGCCTCCTCGACAATCCG 60.279 66.667 0.00 0.00 0.00 4.18
219 220 2.586357 GCCTCCTCGACAATCCGC 60.586 66.667 0.00 0.00 0.00 5.54
220 221 2.278857 CCTCCTCGACAATCCGCG 60.279 66.667 0.00 0.00 0.00 6.46
221 222 2.956964 CTCCTCGACAATCCGCGC 60.957 66.667 0.00 0.00 0.00 6.86
222 223 4.508128 TCCTCGACAATCCGCGCC 62.508 66.667 0.00 0.00 0.00 6.53
223 224 4.514577 CCTCGACAATCCGCGCCT 62.515 66.667 0.00 0.00 0.00 5.52
224 225 2.509336 CTCGACAATCCGCGCCTT 60.509 61.111 0.00 0.00 0.00 4.35
225 226 2.508439 TCGACAATCCGCGCCTTC 60.508 61.111 0.00 0.00 0.00 3.46
226 227 2.813474 CGACAATCCGCGCCTTCA 60.813 61.111 0.00 0.00 0.00 3.02
227 228 2.785258 GACAATCCGCGCCTTCAC 59.215 61.111 0.00 0.00 0.00 3.18
228 229 3.083600 GACAATCCGCGCCTTCACG 62.084 63.158 0.00 0.00 0.00 4.35
244 245 2.029073 CGGCCAGTGTCGTTGTCT 59.971 61.111 2.24 0.00 34.12 3.41
245 246 2.022129 CGGCCAGTGTCGTTGTCTC 61.022 63.158 2.24 0.00 34.12 3.36
246 247 1.668151 GGCCAGTGTCGTTGTCTCC 60.668 63.158 0.00 0.00 0.00 3.71
247 248 2.022129 GCCAGTGTCGTTGTCTCCG 61.022 63.158 0.00 0.00 0.00 4.63
248 249 1.658114 CCAGTGTCGTTGTCTCCGA 59.342 57.895 0.00 0.00 0.00 4.55
249 250 0.387367 CCAGTGTCGTTGTCTCCGAG 60.387 60.000 0.00 0.00 34.56 4.63
250 251 1.004277 CAGTGTCGTTGTCTCCGAGC 61.004 60.000 0.00 0.00 34.56 5.03
251 252 1.173444 AGTGTCGTTGTCTCCGAGCT 61.173 55.000 0.00 0.00 34.56 4.09
252 253 1.004277 GTGTCGTTGTCTCCGAGCTG 61.004 60.000 0.00 0.00 34.56 4.24
253 254 2.089349 GTCGTTGTCTCCGAGCTGC 61.089 63.158 0.00 0.00 34.56 5.25
254 255 3.175240 CGTTGTCTCCGAGCTGCG 61.175 66.667 0.00 0.00 40.47 5.18
255 256 2.049063 GTTGTCTCCGAGCTGCGT 60.049 61.111 0.00 0.00 38.67 5.24
256 257 1.664965 GTTGTCTCCGAGCTGCGTT 60.665 57.895 0.00 0.00 38.67 4.84
257 258 1.664649 TTGTCTCCGAGCTGCGTTG 60.665 57.895 0.00 0.00 38.67 4.10
258 259 3.482783 GTCTCCGAGCTGCGTTGC 61.483 66.667 0.00 0.00 38.67 4.17
259 260 4.742201 TCTCCGAGCTGCGTTGCC 62.742 66.667 0.00 0.00 38.67 4.52
264 265 3.286751 GAGCTGCGTTGCCCACAA 61.287 61.111 0.00 0.00 0.00 3.33
272 273 2.659740 GTTGCCCACAACGTGTTTG 58.340 52.632 0.00 0.00 46.20 2.93
283 284 3.763902 CAACGTGTTTGTGGAAATGACA 58.236 40.909 0.00 0.00 0.00 3.58
284 285 4.358851 CAACGTGTTTGTGGAAATGACAT 58.641 39.130 0.00 0.00 0.00 3.06
285 286 3.963665 ACGTGTTTGTGGAAATGACATG 58.036 40.909 0.00 0.00 34.34 3.21
286 287 2.725723 CGTGTTTGTGGAAATGACATGC 59.274 45.455 0.00 0.00 0.00 4.06
287 288 3.715495 GTGTTTGTGGAAATGACATGCA 58.285 40.909 0.00 0.00 0.00 3.96
288 289 3.490526 GTGTTTGTGGAAATGACATGCAC 59.509 43.478 0.00 0.00 39.31 4.57
289 290 3.131755 TGTTTGTGGAAATGACATGCACA 59.868 39.130 0.00 0.00 45.61 4.57
293 294 5.718724 TGTGGAAATGACATGCACAATAA 57.281 34.783 1.34 0.00 44.56 1.40
294 295 6.094193 TGTGGAAATGACATGCACAATAAA 57.906 33.333 1.34 0.00 44.56 1.40
295 296 6.519382 TGTGGAAATGACATGCACAATAAAA 58.481 32.000 1.34 0.00 44.56 1.52
296 297 6.988580 TGTGGAAATGACATGCACAATAAAAA 59.011 30.769 1.34 0.00 44.56 1.94
319 320 9.719355 AAAAAGAAAAGAAACAGCCTTTTAAGA 57.281 25.926 0.00 0.00 42.07 2.10
320 321 9.890629 AAAAGAAAAGAAACAGCCTTTTAAGAT 57.109 25.926 0.00 0.00 42.07 2.40
321 322 8.877808 AAGAAAAGAAACAGCCTTTTAAGATG 57.122 30.769 0.00 0.00 42.07 2.90
322 323 8.237811 AGAAAAGAAACAGCCTTTTAAGATGA 57.762 30.769 0.00 0.00 42.07 2.92
323 324 8.138074 AGAAAAGAAACAGCCTTTTAAGATGAC 58.862 33.333 0.00 0.00 42.07 3.06
324 325 5.613358 AGAAACAGCCTTTTAAGATGACG 57.387 39.130 0.00 0.00 0.00 4.35
325 326 4.455877 AGAAACAGCCTTTTAAGATGACGG 59.544 41.667 0.00 0.00 0.00 4.79
326 327 2.084546 ACAGCCTTTTAAGATGACGGC 58.915 47.619 0.00 0.00 37.80 5.68
327 328 2.789409 AGCCTTTTAAGATGACGGCT 57.211 45.000 0.00 0.00 42.63 5.52
328 329 2.359900 AGCCTTTTAAGATGACGGCTG 58.640 47.619 0.00 0.00 45.42 4.85
329 330 1.401905 GCCTTTTAAGATGACGGCTGG 59.598 52.381 0.00 0.00 34.80 4.85
330 331 2.017049 CCTTTTAAGATGACGGCTGGG 58.983 52.381 0.00 0.00 0.00 4.45
331 332 2.355716 CCTTTTAAGATGACGGCTGGGA 60.356 50.000 0.00 0.00 0.00 4.37
332 333 3.343617 CTTTTAAGATGACGGCTGGGAA 58.656 45.455 0.00 0.00 0.00 3.97
333 334 3.426787 TTTAAGATGACGGCTGGGAAA 57.573 42.857 0.00 0.00 0.00 3.13
334 335 3.426787 TTAAGATGACGGCTGGGAAAA 57.573 42.857 0.00 0.00 0.00 2.29
335 336 2.514458 AAGATGACGGCTGGGAAAAT 57.486 45.000 0.00 0.00 0.00 1.82
336 337 2.514458 AGATGACGGCTGGGAAAATT 57.486 45.000 0.00 0.00 0.00 1.82
337 338 2.807676 AGATGACGGCTGGGAAAATTT 58.192 42.857 0.00 0.00 0.00 1.82
338 339 3.165071 AGATGACGGCTGGGAAAATTTT 58.835 40.909 2.28 2.28 0.00 1.82
339 340 2.810439 TGACGGCTGGGAAAATTTTG 57.190 45.000 8.47 0.00 0.00 2.44
340 341 2.311463 TGACGGCTGGGAAAATTTTGA 58.689 42.857 8.47 0.00 0.00 2.69
341 342 2.035321 TGACGGCTGGGAAAATTTTGAC 59.965 45.455 8.47 1.38 0.00 3.18
342 343 1.343142 ACGGCTGGGAAAATTTTGACC 59.657 47.619 8.47 10.82 0.00 4.02
343 344 1.337728 CGGCTGGGAAAATTTTGACCC 60.338 52.381 17.16 17.16 42.37 4.46
344 345 1.003118 GGCTGGGAAAATTTTGACCCC 59.997 52.381 19.89 17.98 41.44 4.95
345 346 1.696884 GCTGGGAAAATTTTGACCCCA 59.303 47.619 21.55 21.55 44.21 4.96
346 347 2.549992 GCTGGGAAAATTTTGACCCCAC 60.550 50.000 19.89 14.53 41.78 4.61
347 348 2.972021 CTGGGAAAATTTTGACCCCACT 59.028 45.455 19.89 0.00 41.78 4.00
348 349 2.703007 TGGGAAAATTTTGACCCCACTG 59.297 45.455 19.89 0.00 41.78 3.66
349 350 2.549992 GGGAAAATTTTGACCCCACTGC 60.550 50.000 17.35 0.00 37.04 4.40
350 351 2.549992 GGAAAATTTTGACCCCACTGCC 60.550 50.000 8.47 0.00 0.00 4.85
351 352 1.799933 AAATTTTGACCCCACTGCCA 58.200 45.000 0.00 0.00 0.00 4.92
352 353 1.799933 AATTTTGACCCCACTGCCAA 58.200 45.000 0.00 0.00 0.00 4.52
353 354 1.799933 ATTTTGACCCCACTGCCAAA 58.200 45.000 0.00 0.00 0.00 3.28
354 355 1.799933 TTTTGACCCCACTGCCAAAT 58.200 45.000 0.00 0.00 0.00 2.32
355 356 1.047002 TTTGACCCCACTGCCAAATG 58.953 50.000 0.00 0.00 0.00 2.32
356 357 0.105760 TTGACCCCACTGCCAAATGT 60.106 50.000 0.00 0.00 0.00 2.71
357 358 0.105760 TGACCCCACTGCCAAATGTT 60.106 50.000 0.00 0.00 0.00 2.71
358 359 1.047801 GACCCCACTGCCAAATGTTT 58.952 50.000 0.00 0.00 0.00 2.83
359 360 1.000843 GACCCCACTGCCAAATGTTTC 59.999 52.381 0.00 0.00 0.00 2.78
360 361 0.038343 CCCCACTGCCAAATGTTTCG 60.038 55.000 0.00 0.00 0.00 3.46
361 362 0.667184 CCCACTGCCAAATGTTTCGC 60.667 55.000 0.00 0.00 0.00 4.70
362 363 0.667184 CCACTGCCAAATGTTTCGCC 60.667 55.000 0.00 0.00 0.00 5.54
363 364 1.003262 CACTGCCAAATGTTTCGCCG 61.003 55.000 0.00 0.00 0.00 6.46
364 365 1.444212 CTGCCAAATGTTTCGCCGG 60.444 57.895 0.00 0.00 0.00 6.13
365 366 2.809174 GCCAAATGTTTCGCCGGC 60.809 61.111 19.07 19.07 0.00 6.13
366 367 2.647875 CCAAATGTTTCGCCGGCA 59.352 55.556 28.98 11.20 0.00 5.69
367 368 1.444212 CCAAATGTTTCGCCGGCAG 60.444 57.895 28.98 19.33 0.00 4.85
368 369 2.088178 CAAATGTTTCGCCGGCAGC 61.088 57.895 28.98 10.77 38.52 5.25
369 370 3.281359 AAATGTTTCGCCGGCAGCC 62.281 57.895 28.98 11.40 38.78 4.85
379 380 4.020617 CGGCAGCCCCTCAGACAA 62.021 66.667 5.63 0.00 0.00 3.18
380 381 2.360475 GGCAGCCCCTCAGACAAC 60.360 66.667 0.00 0.00 0.00 3.32
381 382 2.743928 GCAGCCCCTCAGACAACG 60.744 66.667 0.00 0.00 0.00 4.10
382 383 3.059982 CAGCCCCTCAGACAACGA 58.940 61.111 0.00 0.00 0.00 3.85
383 384 1.371183 CAGCCCCTCAGACAACGAA 59.629 57.895 0.00 0.00 0.00 3.85
384 385 0.250295 CAGCCCCTCAGACAACGAAA 60.250 55.000 0.00 0.00 0.00 3.46
385 386 0.472471 AGCCCCTCAGACAACGAAAA 59.528 50.000 0.00 0.00 0.00 2.29
386 387 1.133915 AGCCCCTCAGACAACGAAAAA 60.134 47.619 0.00 0.00 0.00 1.94
410 411 0.463620 CTCCTAGGAGGCTCAACAGC 59.536 60.000 28.68 0.00 46.06 4.40
411 412 0.041833 TCCTAGGAGGCTCAACAGCT 59.958 55.000 17.69 6.15 46.03 4.24
412 413 0.177604 CCTAGGAGGCTCAACAGCTG 59.822 60.000 17.69 13.48 46.03 4.24
413 414 0.177604 CTAGGAGGCTCAACAGCTGG 59.822 60.000 19.93 0.36 46.03 4.85
414 415 0.252239 TAGGAGGCTCAACAGCTGGA 60.252 55.000 19.93 5.53 46.03 3.86
415 416 1.078567 GGAGGCTCAACAGCTGGAG 60.079 63.158 19.93 16.41 46.03 3.86
416 417 1.548357 GGAGGCTCAACAGCTGGAGA 61.548 60.000 19.93 14.03 46.03 3.71
417 418 0.540923 GAGGCTCAACAGCTGGAGAT 59.459 55.000 19.93 8.09 46.03 2.75
418 419 0.252479 AGGCTCAACAGCTGGAGATG 59.748 55.000 19.93 11.32 46.03 2.90
419 420 1.375098 GGCTCAACAGCTGGAGATGC 61.375 60.000 19.93 17.54 46.03 3.91
420 421 0.392729 GCTCAACAGCTGGAGATGCT 60.393 55.000 19.93 0.00 43.09 3.79
421 422 1.654317 CTCAACAGCTGGAGATGCTC 58.346 55.000 19.93 0.00 38.92 4.26
426 427 1.138661 ACAGCTGGAGATGCTCTTAGC 59.861 52.381 19.93 12.79 42.82 3.09
535 541 3.842126 CCACACACGATGCGAGCG 61.842 66.667 0.00 0.00 0.00 5.03
542 548 4.351316 CGATGCGAGCGCTCATGC 62.351 66.667 34.69 29.43 42.51 4.06
572 578 3.131046 GGTCAATAAGAGTGGGCCAAATG 59.869 47.826 8.40 0.00 0.00 2.32
584 590 2.000587 CCAAATGCGTACCGTACCG 58.999 57.895 3.04 0.45 0.00 4.02
588 594 0.317269 AATGCGTACCGTACCGATCG 60.317 55.000 8.51 8.51 0.00 3.69
589 595 2.722130 ATGCGTACCGTACCGATCGC 62.722 60.000 10.32 15.32 39.00 4.58
609 615 2.045242 ACGTGCCTCTCCTCGCTA 60.045 61.111 0.00 0.00 0.00 4.26
614 620 2.829003 CCTCTCCTCGCTACGGCA 60.829 66.667 0.00 0.00 38.60 5.69
635 641 0.739813 AAATCCTACGGTGCGTGCTC 60.740 55.000 0.00 0.00 41.39 4.26
654 660 2.730094 CTTGCTTGCCGCCTTTGT 59.270 55.556 0.00 0.00 38.05 2.83
655 661 1.662446 CTTGCTTGCCGCCTTTGTG 60.662 57.895 0.00 0.00 38.05 3.33
656 662 3.149338 TTGCTTGCCGCCTTTGTGG 62.149 57.895 0.00 0.00 45.43 4.17
657 663 3.294493 GCTTGCCGCCTTTGTGGA 61.294 61.111 0.00 0.00 45.51 4.02
658 664 2.956987 CTTGCCGCCTTTGTGGAG 59.043 61.111 0.00 0.00 45.51 3.86
659 665 1.600636 CTTGCCGCCTTTGTGGAGA 60.601 57.895 0.00 0.00 45.51 3.71
660 666 0.962356 CTTGCCGCCTTTGTGGAGAT 60.962 55.000 0.00 0.00 45.51 2.75
661 667 0.326595 TTGCCGCCTTTGTGGAGATA 59.673 50.000 0.00 0.00 45.51 1.98
662 668 0.546122 TGCCGCCTTTGTGGAGATAT 59.454 50.000 0.00 0.00 45.51 1.63
663 669 1.765904 TGCCGCCTTTGTGGAGATATA 59.234 47.619 0.00 0.00 45.51 0.86
664 670 2.143925 GCCGCCTTTGTGGAGATATAC 58.856 52.381 0.00 0.00 45.51 1.47
665 671 2.484770 GCCGCCTTTGTGGAGATATACA 60.485 50.000 0.00 0.00 45.51 2.29
666 672 3.393800 CCGCCTTTGTGGAGATATACAG 58.606 50.000 0.00 0.00 45.51 2.74
667 673 2.802816 CGCCTTTGTGGAGATATACAGC 59.197 50.000 0.00 0.00 37.90 4.40
670 676 4.636249 CCTTTGTGGAGATATACAGCCTC 58.364 47.826 0.00 0.00 38.35 4.70
686 692 0.109412 CCTCGGTCTTGTACGTCACC 60.109 60.000 0.00 0.00 0.00 4.02
705 712 1.226030 CCGTGACGTGACCTTTTCCC 61.226 60.000 3.64 0.00 0.00 3.97
706 713 1.554042 CGTGACGTGACCTTTTCCCG 61.554 60.000 0.00 0.00 0.00 5.14
707 714 0.531311 GTGACGTGACCTTTTCCCGT 60.531 55.000 0.00 0.00 0.00 5.28
708 715 1.039068 TGACGTGACCTTTTCCCGTA 58.961 50.000 0.00 0.00 0.00 4.02
731 739 3.056328 GCCCCAAGTTGCCTCGAC 61.056 66.667 0.00 0.00 0.00 4.20
749 757 3.315191 TCGACCCTTCTTCTTTTGCTTTG 59.685 43.478 0.00 0.00 0.00 2.77
762 779 0.313672 TGCTTTGATTTTTCCGCGCT 59.686 45.000 5.56 0.00 0.00 5.92
763 780 1.269517 TGCTTTGATTTTTCCGCGCTT 60.270 42.857 5.56 0.00 0.00 4.68
764 781 2.030717 TGCTTTGATTTTTCCGCGCTTA 60.031 40.909 5.56 0.00 0.00 3.09
765 782 2.983803 GCTTTGATTTTTCCGCGCTTAA 59.016 40.909 5.56 0.00 0.00 1.85
802 823 4.111198 CAAGTCTGAAGTCTGATCATCCG 58.889 47.826 0.00 0.00 0.00 4.18
810 856 0.465705 TCTGATCATCCGTTGGCCTC 59.534 55.000 3.32 0.00 0.00 4.70
821 867 5.464030 TCCGTTGGCCTCTCTATATAAAC 57.536 43.478 3.32 0.00 0.00 2.01
822 868 4.022589 TCCGTTGGCCTCTCTATATAAACG 60.023 45.833 3.32 7.51 38.97 3.60
823 869 4.022589 CCGTTGGCCTCTCTATATAAACGA 60.023 45.833 16.41 0.00 41.05 3.85
824 870 4.916249 CGTTGGCCTCTCTATATAAACGAC 59.084 45.833 3.32 0.00 41.05 4.34
859 905 0.036875 CTCAACTCAACCCTCCCACC 59.963 60.000 0.00 0.00 0.00 4.61
863 909 2.039298 TCAACCCTCCCACCCACA 60.039 61.111 0.00 0.00 0.00 4.17
864 910 2.115266 CAACCCTCCCACCCACAC 59.885 66.667 0.00 0.00 0.00 3.82
865 911 2.369015 AACCCTCCCACCCACACA 60.369 61.111 0.00 0.00 0.00 3.72
898 945 1.134907 CCAAACCATCTGCAAGCATCC 60.135 52.381 0.00 0.00 0.00 3.51
1008 1078 1.063806 GCTGATAAGCTATGGCGTCG 58.936 55.000 0.00 0.00 44.37 5.12
1128 1201 3.123620 GCCAAGAGCAGCACGGAG 61.124 66.667 0.00 0.00 42.97 4.63
1133 1206 1.476007 AAGAGCAGCACGGAGAAGGT 61.476 55.000 0.00 0.00 0.00 3.50
1260 1345 4.344865 GCGCCCACTTCCCCTTGA 62.345 66.667 0.00 0.00 0.00 3.02
1262 1347 1.750399 CGCCCACTTCCCCTTGATG 60.750 63.158 0.00 0.00 0.00 3.07
1305 1420 0.811281 AAATTGTAGGCCGCAGCTTC 59.189 50.000 0.00 0.00 39.73 3.86
1368 1500 4.098044 TCGATCGTTTAGCTTCTCTTGGAT 59.902 41.667 15.94 0.00 0.00 3.41
1469 1603 6.319152 TCAATTGAGTTGACCTCCGTTTTTAA 59.681 34.615 3.38 0.00 41.79 1.52
1473 1607 4.866921 AGTTGACCTCCGTTTTTAATTGC 58.133 39.130 0.00 0.00 0.00 3.56
1474 1608 4.583073 AGTTGACCTCCGTTTTTAATTGCT 59.417 37.500 0.00 0.00 0.00 3.91
1545 1693 2.415893 CCTTCGTTTGGGCTAAGCATTG 60.416 50.000 0.00 0.00 0.00 2.82
1588 1860 1.904287 TAAACTGCCCGACTGCATTT 58.096 45.000 0.00 0.00 41.16 2.32
1719 1995 7.949428 CGTGGTAATTTTCATACAAAAATGCAC 59.051 33.333 0.00 0.00 38.51 4.57
1730 2006 9.388346 TCATACAAAAATGCACTAAAGTAAACG 57.612 29.630 0.00 0.00 0.00 3.60
1736 2012 8.865590 AAAATGCACTAAAGTAAACGAAATGT 57.134 26.923 0.00 0.00 0.00 2.71
1743 2019 7.269084 CACTAAAGTAAACGAAATGTCATGCTG 59.731 37.037 0.00 0.00 0.00 4.41
1745 2021 5.689383 AGTAAACGAAATGTCATGCTGTT 57.311 34.783 0.00 0.00 0.00 3.16
1752 2028 4.739228 CGAAATGTCATGCTGTTTGTTGAA 59.261 37.500 0.00 0.00 0.00 2.69
1755 2031 7.517101 CGAAATGTCATGCTGTTTGTTGAAAAT 60.517 33.333 0.00 0.00 0.00 1.82
1796 2072 3.570540 ACAGACAGCTGAGGCAGATATA 58.429 45.455 23.35 0.00 45.17 0.86
1803 2079 6.800543 ACAGCTGAGGCAGATATATATTACG 58.199 40.000 23.35 0.00 41.70 3.18
1821 2097 1.604278 ACGCCTTCTCACTCTTTTTGC 59.396 47.619 0.00 0.00 0.00 3.68
1871 2147 8.715191 AAAACTGTGTCAATTAATTTGCTTCA 57.285 26.923 0.00 0.00 35.16 3.02
1951 2227 3.865224 GCAAATGCAGAAACAACTTGG 57.135 42.857 0.00 0.00 41.59 3.61
1955 2231 5.391843 GCAAATGCAGAAACAACTTGGTTTT 60.392 36.000 0.00 0.00 39.84 2.43
1956 2232 6.610456 CAAATGCAGAAACAACTTGGTTTTT 58.390 32.000 0.00 0.00 40.85 1.94
1957 2233 6.421377 AATGCAGAAACAACTTGGTTTTTC 57.579 33.333 0.00 0.00 40.85 2.29
1962 2238 6.796552 GCAGAAACAACTTGGTTTTTCTTTTG 59.203 34.615 0.00 0.00 40.85 2.44
1963 2239 7.297391 CAGAAACAACTTGGTTTTTCTTTTGG 58.703 34.615 0.00 4.82 40.85 3.28
1969 2245 6.702716 ACTTGGTTTTTCTTTTGGACGATA 57.297 33.333 0.00 0.00 0.00 2.92
1973 2249 5.242838 TGGTTTTTCTTTTGGACGATAGCAT 59.757 36.000 0.00 0.00 42.67 3.79
2036 2312 8.345565 GTGATACCTAATCATACCTTGCAAAAG 58.654 37.037 0.00 0.00 46.21 2.27
2077 2353 3.152341 CAAGGCCATGAATATCACTCCC 58.848 50.000 5.01 0.00 0.00 4.30
2081 2357 2.613977 GCCATGAATATCACTCCCTCCG 60.614 54.545 0.00 0.00 0.00 4.63
2089 2365 1.215647 CACTCCCTCCGGTCGAAAG 59.784 63.158 0.00 0.00 0.00 2.62
2105 2381 0.178975 AAAGAAATGTCGTGGGGGCA 60.179 50.000 0.00 0.00 0.00 5.36
2159 2435 3.467226 GTGCGTGCTAGGGGGCTA 61.467 66.667 0.00 0.00 0.00 3.93
2197 2473 1.030457 CCAGATCTGGCCATTCAAGC 58.970 55.000 28.45 0.00 44.73 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.309052 GCATGATGCCTCCAGAGAG 57.691 57.895 6.04 0.00 37.42 3.20
27 28 3.285215 CCCAGAGCGGCATGATGC 61.285 66.667 9.33 9.33 44.08 3.91
28 29 1.890979 GTCCCAGAGCGGCATGATG 60.891 63.158 1.45 0.00 0.00 3.07
29 30 2.507944 GTCCCAGAGCGGCATGAT 59.492 61.111 1.45 0.00 0.00 2.45
30 31 4.147449 CGTCCCAGAGCGGCATGA 62.147 66.667 1.45 0.00 0.00 3.07
36 37 4.778415 CGACACCGTCCCAGAGCG 62.778 72.222 0.00 0.00 0.00 5.03
48 49 1.352156 GAAGGCGGTGATGACGACAC 61.352 60.000 0.00 0.00 43.13 3.67
49 50 1.080093 GAAGGCGGTGATGACGACA 60.080 57.895 0.00 0.00 43.13 4.35
50 51 2.158959 CGAAGGCGGTGATGACGAC 61.159 63.158 0.00 0.00 40.35 4.34
51 52 1.663379 ATCGAAGGCGGTGATGACGA 61.663 55.000 0.00 0.00 38.28 4.20
52 53 1.209275 GATCGAAGGCGGTGATGACG 61.209 60.000 0.00 0.00 38.28 4.35
53 54 0.103208 AGATCGAAGGCGGTGATGAC 59.897 55.000 0.00 0.00 38.28 3.06
54 55 0.824109 AAGATCGAAGGCGGTGATGA 59.176 50.000 0.00 0.00 38.28 2.92
55 56 0.933097 CAAGATCGAAGGCGGTGATG 59.067 55.000 0.00 0.00 38.28 3.07
56 57 0.537188 ACAAGATCGAAGGCGGTGAT 59.463 50.000 0.00 0.00 38.28 3.06
57 58 0.108804 GACAAGATCGAAGGCGGTGA 60.109 55.000 0.00 0.00 38.28 4.02
58 59 1.084370 GGACAAGATCGAAGGCGGTG 61.084 60.000 0.00 0.00 38.28 4.94
59 60 1.218316 GGACAAGATCGAAGGCGGT 59.782 57.895 0.00 0.00 38.28 5.68
60 61 0.807667 CTGGACAAGATCGAAGGCGG 60.808 60.000 0.00 0.00 38.28 6.13
61 62 0.807667 CCTGGACAAGATCGAAGGCG 60.808 60.000 0.00 0.00 39.35 5.52
62 63 1.092345 GCCTGGACAAGATCGAAGGC 61.092 60.000 4.85 4.85 45.50 4.35
63 64 0.462759 GGCCTGGACAAGATCGAAGG 60.463 60.000 0.00 0.00 35.72 3.46
64 65 0.807667 CGGCCTGGACAAGATCGAAG 60.808 60.000 0.00 0.00 0.00 3.79
65 66 1.218047 CGGCCTGGACAAGATCGAA 59.782 57.895 0.00 0.00 0.00 3.71
66 67 1.680989 TCGGCCTGGACAAGATCGA 60.681 57.895 0.00 0.00 0.00 3.59
67 68 1.519455 GTCGGCCTGGACAAGATCG 60.519 63.158 0.00 0.00 36.91 3.69
68 69 1.519455 CGTCGGCCTGGACAAGATC 60.519 63.158 10.86 0.00 36.73 2.75
69 70 2.227089 GACGTCGGCCTGGACAAGAT 62.227 60.000 10.86 0.00 36.73 2.40
70 71 2.915659 ACGTCGGCCTGGACAAGA 60.916 61.111 10.86 0.00 36.73 3.02
71 72 2.432628 GACGTCGGCCTGGACAAG 60.433 66.667 10.86 0.00 36.73 3.16
72 73 4.351938 CGACGTCGGCCTGGACAA 62.352 66.667 29.70 0.00 36.73 3.18
95 96 2.742372 TCAAAGCGAGCGGAAGGC 60.742 61.111 0.00 0.00 44.05 4.35
96 97 1.630244 CTGTCAAAGCGAGCGGAAGG 61.630 60.000 0.00 0.00 0.00 3.46
97 98 1.784062 CTGTCAAAGCGAGCGGAAG 59.216 57.895 0.00 0.00 0.00 3.46
98 99 2.317609 GCTGTCAAAGCGAGCGGAA 61.318 57.895 0.00 0.00 43.45 4.30
99 100 2.738521 GCTGTCAAAGCGAGCGGA 60.739 61.111 0.00 0.00 43.45 5.54
107 108 1.016130 AGGATGTCGCGCTGTCAAAG 61.016 55.000 5.56 0.00 0.00 2.77
108 109 0.602638 AAGGATGTCGCGCTGTCAAA 60.603 50.000 5.56 0.00 0.00 2.69
109 110 1.005037 AAGGATGTCGCGCTGTCAA 60.005 52.632 5.56 0.00 0.00 3.18
110 111 1.446099 GAAGGATGTCGCGCTGTCA 60.446 57.895 5.56 3.65 0.00 3.58
111 112 2.167861 GGAAGGATGTCGCGCTGTC 61.168 63.158 5.56 0.00 0.00 3.51
112 113 2.125512 GGAAGGATGTCGCGCTGT 60.126 61.111 5.56 0.00 0.00 4.40
113 114 3.257561 CGGAAGGATGTCGCGCTG 61.258 66.667 5.56 0.00 0.00 5.18
123 124 4.976313 TTGCAGAACAAAGCCGGAAGGA 62.976 50.000 5.05 0.00 45.70 3.36
124 125 2.690683 TTGCAGAACAAAGCCGGAAGG 61.691 52.381 5.05 0.00 45.63 3.46
125 126 0.667993 TTGCAGAACAAAGCCGGAAG 59.332 50.000 5.05 0.00 34.56 3.46
126 127 0.383949 GTTGCAGAACAAAGCCGGAA 59.616 50.000 5.05 0.00 40.82 4.30
127 128 1.781025 CGTTGCAGAACAAAGCCGGA 61.781 55.000 5.05 0.00 40.82 5.14
128 129 1.370414 CGTTGCAGAACAAAGCCGG 60.370 57.895 0.00 0.00 40.82 6.13
129 130 4.210447 CGTTGCAGAACAAAGCCG 57.790 55.556 0.00 0.00 40.82 5.52
132 133 1.788308 CAATGGCGTTGCAGAACAAAG 59.212 47.619 6.49 0.00 40.82 2.77
133 134 1.850377 CAATGGCGTTGCAGAACAAA 58.150 45.000 6.49 0.00 40.82 2.83
134 135 3.566273 CAATGGCGTTGCAGAACAA 57.434 47.368 6.49 0.00 35.33 2.83
142 143 2.259204 CCACTGGCAATGGCGTTG 59.741 61.111 15.08 15.08 42.47 4.10
166 167 4.785453 CCAGGACCCGCTTGCCTC 62.785 72.222 0.00 0.00 0.00 4.70
170 171 3.335356 ATGAGCCAGGACCCGCTTG 62.335 63.158 5.20 0.00 34.84 4.01
171 172 3.011517 ATGAGCCAGGACCCGCTT 61.012 61.111 5.20 0.00 34.84 4.68
172 173 3.474570 GATGAGCCAGGACCCGCT 61.475 66.667 3.33 3.33 38.27 5.52
173 174 4.899239 CGATGAGCCAGGACCCGC 62.899 72.222 0.00 0.00 0.00 6.13
174 175 4.227134 CCGATGAGCCAGGACCCG 62.227 72.222 0.00 0.00 0.00 5.28
175 176 3.866582 CCCGATGAGCCAGGACCC 61.867 72.222 0.00 0.00 0.00 4.46
176 177 4.554036 GCCCGATGAGCCAGGACC 62.554 72.222 0.00 0.00 0.00 4.46
177 178 4.899239 CGCCCGATGAGCCAGGAC 62.899 72.222 0.00 0.00 0.00 3.85
180 181 4.161295 TTCCGCCCGATGAGCCAG 62.161 66.667 0.00 0.00 0.00 4.85
181 182 4.161295 CTTCCGCCCGATGAGCCA 62.161 66.667 0.00 0.00 0.00 4.75
183 184 4.537433 AGCTTCCGCCCGATGAGC 62.537 66.667 0.00 0.00 36.60 4.26
184 185 2.279784 GAGCTTCCGCCCGATGAG 60.280 66.667 0.00 0.00 36.60 2.90
185 186 4.207281 CGAGCTTCCGCCCGATGA 62.207 66.667 0.00 0.00 40.03 2.92
193 194 4.560856 CGAGGAGGCGAGCTTCCG 62.561 72.222 18.46 6.11 45.53 4.30
194 195 3.141488 TCGAGGAGGCGAGCTTCC 61.141 66.667 17.16 17.16 41.85 3.46
195 196 2.103340 GTCGAGGAGGCGAGCTTC 59.897 66.667 0.00 0.00 41.49 3.86
196 197 1.608717 ATTGTCGAGGAGGCGAGCTT 61.609 55.000 0.00 0.00 41.49 3.74
197 198 2.010582 GATTGTCGAGGAGGCGAGCT 62.011 60.000 0.00 0.00 41.49 4.09
198 199 1.590259 GATTGTCGAGGAGGCGAGC 60.590 63.158 0.00 0.00 41.49 5.03
199 200 1.066587 GGATTGTCGAGGAGGCGAG 59.933 63.158 0.00 0.00 41.49 5.03
200 201 2.771639 CGGATTGTCGAGGAGGCGA 61.772 63.158 0.00 0.00 38.07 5.54
201 202 2.278857 CGGATTGTCGAGGAGGCG 60.279 66.667 0.00 0.00 0.00 5.52
202 203 2.586357 GCGGATTGTCGAGGAGGC 60.586 66.667 0.00 0.00 0.00 4.70
203 204 2.278857 CGCGGATTGTCGAGGAGG 60.279 66.667 0.00 0.00 0.00 4.30
204 205 2.956964 GCGCGGATTGTCGAGGAG 60.957 66.667 8.83 0.00 0.00 3.69
205 206 4.508128 GGCGCGGATTGTCGAGGA 62.508 66.667 8.83 0.00 0.00 3.71
206 207 4.514577 AGGCGCGGATTGTCGAGG 62.515 66.667 8.83 0.00 0.00 4.63
207 208 2.509336 AAGGCGCGGATTGTCGAG 60.509 61.111 8.83 0.00 0.00 4.04
208 209 2.508439 GAAGGCGCGGATTGTCGA 60.508 61.111 8.83 0.00 0.00 4.20
209 210 2.813474 TGAAGGCGCGGATTGTCG 60.813 61.111 8.83 0.00 0.00 4.35
210 211 2.785258 GTGAAGGCGCGGATTGTC 59.215 61.111 8.83 0.00 0.00 3.18
211 212 3.118454 CGTGAAGGCGCGGATTGT 61.118 61.111 8.83 0.00 43.88 2.71
221 222 2.738521 CGACACTGGCCGTGAAGG 60.739 66.667 27.07 14.89 46.81 3.46
222 223 1.594293 AACGACACTGGCCGTGAAG 60.594 57.895 27.07 21.62 46.81 3.02
223 224 1.885388 CAACGACACTGGCCGTGAA 60.885 57.895 27.07 0.00 46.81 3.18
224 225 2.279851 CAACGACACTGGCCGTGA 60.280 61.111 27.07 0.00 46.81 4.35
226 227 2.279918 GACAACGACACTGGCCGT 60.280 61.111 0.00 0.00 41.14 5.68
227 228 2.022129 GAGACAACGACACTGGCCG 61.022 63.158 0.00 0.00 0.00 6.13
228 229 1.668151 GGAGACAACGACACTGGCC 60.668 63.158 0.00 0.00 0.00 5.36
229 230 2.022129 CGGAGACAACGACACTGGC 61.022 63.158 0.00 0.00 0.00 4.85
230 231 0.387367 CTCGGAGACAACGACACTGG 60.387 60.000 0.00 0.00 36.25 4.00
231 232 1.004277 GCTCGGAGACAACGACACTG 61.004 60.000 9.69 0.00 36.25 3.66
232 233 1.173444 AGCTCGGAGACAACGACACT 61.173 55.000 9.69 0.00 36.25 3.55
233 234 1.004277 CAGCTCGGAGACAACGACAC 61.004 60.000 9.69 0.00 36.25 3.67
234 235 1.285950 CAGCTCGGAGACAACGACA 59.714 57.895 9.69 0.00 36.25 4.35
235 236 2.089349 GCAGCTCGGAGACAACGAC 61.089 63.158 9.69 0.00 36.25 4.34
236 237 2.258591 GCAGCTCGGAGACAACGA 59.741 61.111 9.69 0.00 38.79 3.85
237 238 3.175240 CGCAGCTCGGAGACAACG 61.175 66.667 9.69 2.59 33.78 4.10
238 239 1.664965 AACGCAGCTCGGAGACAAC 60.665 57.895 9.69 0.00 43.86 3.32
239 240 1.664649 CAACGCAGCTCGGAGACAA 60.665 57.895 9.69 0.00 43.86 3.18
240 241 2.049156 CAACGCAGCTCGGAGACA 60.049 61.111 9.69 0.00 43.86 3.41
241 242 3.482783 GCAACGCAGCTCGGAGAC 61.483 66.667 9.69 0.04 43.86 3.36
242 243 4.742201 GGCAACGCAGCTCGGAGA 62.742 66.667 9.69 0.00 43.86 3.71
247 248 3.286751 TTGTGGGCAACGCAGCTC 61.287 61.111 0.00 0.00 41.30 4.09
248 249 3.595758 GTTGTGGGCAACGCAGCT 61.596 61.111 0.00 0.00 44.40 4.24
262 263 3.763902 TGTCATTTCCACAAACACGTTG 58.236 40.909 0.00 0.00 43.43 4.10
263 264 4.358851 CATGTCATTTCCACAAACACGTT 58.641 39.130 0.00 0.00 0.00 3.99
264 265 3.795150 GCATGTCATTTCCACAAACACGT 60.795 43.478 0.00 0.00 0.00 4.49
265 266 2.725723 GCATGTCATTTCCACAAACACG 59.274 45.455 0.00 0.00 0.00 4.49
266 267 3.490526 GTGCATGTCATTTCCACAAACAC 59.509 43.478 0.00 0.00 30.87 3.32
267 268 3.131755 TGTGCATGTCATTTCCACAAACA 59.868 39.130 7.79 0.00 33.90 2.83
268 269 3.715495 TGTGCATGTCATTTCCACAAAC 58.285 40.909 7.79 0.00 33.90 2.93
269 270 4.397481 TTGTGCATGTCATTTCCACAAA 57.603 36.364 15.68 5.56 41.70 2.83
270 271 4.603989 ATTGTGCATGTCATTTCCACAA 57.396 36.364 18.39 18.39 46.45 3.33
271 272 5.718724 TTATTGTGCATGTCATTTCCACA 57.281 34.783 0.00 6.62 34.90 4.17
272 273 7.418840 TTTTTATTGTGCATGTCATTTCCAC 57.581 32.000 0.00 0.00 0.00 4.02
293 294 9.719355 TCTTAAAAGGCTGTTTCTTTTCTTTTT 57.281 25.926 0.00 0.00 41.70 1.94
294 295 9.890629 ATCTTAAAAGGCTGTTTCTTTTCTTTT 57.109 25.926 0.00 0.00 41.70 2.27
295 296 9.317936 CATCTTAAAAGGCTGTTTCTTTTCTTT 57.682 29.630 0.00 0.00 41.70 2.52
296 297 8.695456 TCATCTTAAAAGGCTGTTTCTTTTCTT 58.305 29.630 0.00 0.00 41.70 2.52
297 298 8.138074 GTCATCTTAAAAGGCTGTTTCTTTTCT 58.862 33.333 0.00 0.00 41.70 2.52
298 299 7.113544 CGTCATCTTAAAAGGCTGTTTCTTTTC 59.886 37.037 0.00 0.00 41.70 2.29
299 300 6.918022 CGTCATCTTAAAAGGCTGTTTCTTTT 59.082 34.615 0.00 6.95 43.95 2.27
300 301 6.438763 CGTCATCTTAAAAGGCTGTTTCTTT 58.561 36.000 0.00 0.00 36.15 2.52
301 302 5.048713 CCGTCATCTTAAAAGGCTGTTTCTT 60.049 40.000 0.00 0.00 0.00 2.52
302 303 4.455877 CCGTCATCTTAAAAGGCTGTTTCT 59.544 41.667 0.00 0.00 0.00 2.52
303 304 4.723248 CCGTCATCTTAAAAGGCTGTTTC 58.277 43.478 0.00 0.00 0.00 2.78
304 305 3.057526 GCCGTCATCTTAAAAGGCTGTTT 60.058 43.478 0.00 0.00 41.21 2.83
305 306 2.488153 GCCGTCATCTTAAAAGGCTGTT 59.512 45.455 0.00 0.00 41.21 3.16
306 307 2.084546 GCCGTCATCTTAAAAGGCTGT 58.915 47.619 0.00 0.00 41.21 4.40
307 308 2.832672 GCCGTCATCTTAAAAGGCTG 57.167 50.000 0.00 0.00 41.21 4.85
309 310 1.401905 CCAGCCGTCATCTTAAAAGGC 59.598 52.381 0.00 0.00 44.45 4.35
310 311 2.017049 CCCAGCCGTCATCTTAAAAGG 58.983 52.381 0.00 0.00 0.00 3.11
311 312 2.985896 TCCCAGCCGTCATCTTAAAAG 58.014 47.619 0.00 0.00 0.00 2.27
312 313 3.426787 TTCCCAGCCGTCATCTTAAAA 57.573 42.857 0.00 0.00 0.00 1.52
313 314 3.426787 TTTCCCAGCCGTCATCTTAAA 57.573 42.857 0.00 0.00 0.00 1.52
314 315 3.426787 TTTTCCCAGCCGTCATCTTAA 57.573 42.857 0.00 0.00 0.00 1.85
315 316 3.644966 ATTTTCCCAGCCGTCATCTTA 57.355 42.857 0.00 0.00 0.00 2.10
316 317 2.514458 ATTTTCCCAGCCGTCATCTT 57.486 45.000 0.00 0.00 0.00 2.40
317 318 2.514458 AATTTTCCCAGCCGTCATCT 57.486 45.000 0.00 0.00 0.00 2.90
318 319 3.056891 TCAAAATTTTCCCAGCCGTCATC 60.057 43.478 0.00 0.00 0.00 2.92
319 320 2.896685 TCAAAATTTTCCCAGCCGTCAT 59.103 40.909 0.00 0.00 0.00 3.06
320 321 2.035321 GTCAAAATTTTCCCAGCCGTCA 59.965 45.455 0.00 0.00 0.00 4.35
321 322 2.609491 GGTCAAAATTTTCCCAGCCGTC 60.609 50.000 0.00 0.00 0.00 4.79
322 323 1.343142 GGTCAAAATTTTCCCAGCCGT 59.657 47.619 0.00 0.00 0.00 5.68
323 324 1.337728 GGGTCAAAATTTTCCCAGCCG 60.338 52.381 18.50 0.41 39.68 5.52
324 325 1.003118 GGGGTCAAAATTTTCCCAGCC 59.997 52.381 22.70 17.02 41.51 4.85
325 326 1.696884 TGGGGTCAAAATTTTCCCAGC 59.303 47.619 22.70 11.40 42.21 4.85
327 328 2.703007 CAGTGGGGTCAAAATTTTCCCA 59.297 45.455 22.70 21.34 44.59 4.37
328 329 2.549992 GCAGTGGGGTCAAAATTTTCCC 60.550 50.000 16.14 16.14 39.22 3.97
329 330 2.549992 GGCAGTGGGGTCAAAATTTTCC 60.550 50.000 0.00 0.09 0.00 3.13
330 331 2.103941 TGGCAGTGGGGTCAAAATTTTC 59.896 45.455 0.00 0.00 0.00 2.29
331 332 2.122768 TGGCAGTGGGGTCAAAATTTT 58.877 42.857 0.00 0.00 0.00 1.82
332 333 1.799933 TGGCAGTGGGGTCAAAATTT 58.200 45.000 0.00 0.00 0.00 1.82
333 334 1.799933 TTGGCAGTGGGGTCAAAATT 58.200 45.000 0.00 0.00 27.67 1.82
334 335 1.799933 TTTGGCAGTGGGGTCAAAAT 58.200 45.000 0.00 0.00 39.23 1.82
335 336 1.415659 CATTTGGCAGTGGGGTCAAAA 59.584 47.619 0.00 0.00 44.57 2.44
336 337 1.047002 CATTTGGCAGTGGGGTCAAA 58.953 50.000 0.00 0.00 45.37 2.69
337 338 0.105760 ACATTTGGCAGTGGGGTCAA 60.106 50.000 6.86 0.00 0.00 3.18
338 339 0.105760 AACATTTGGCAGTGGGGTCA 60.106 50.000 6.86 0.00 0.00 4.02
339 340 1.000843 GAAACATTTGGCAGTGGGGTC 59.999 52.381 6.86 0.00 0.00 4.46
340 341 1.047801 GAAACATTTGGCAGTGGGGT 58.952 50.000 6.86 0.00 0.00 4.95
341 342 0.038343 CGAAACATTTGGCAGTGGGG 60.038 55.000 6.86 0.00 0.00 4.96
342 343 0.667184 GCGAAACATTTGGCAGTGGG 60.667 55.000 6.49 0.00 40.90 4.61
343 344 0.667184 GGCGAAACATTTGGCAGTGG 60.667 55.000 12.51 0.00 42.66 4.00
344 345 1.003262 CGGCGAAACATTTGGCAGTG 61.003 55.000 0.00 1.03 42.66 3.66
345 346 1.285641 CGGCGAAACATTTGGCAGT 59.714 52.632 0.00 0.00 42.66 4.40
346 347 1.444212 CCGGCGAAACATTTGGCAG 60.444 57.895 9.30 8.68 42.66 4.85
347 348 2.647875 CCGGCGAAACATTTGGCA 59.352 55.556 9.30 0.00 42.66 4.92
348 349 2.809174 GCCGGCGAAACATTTGGC 60.809 61.111 12.58 3.01 40.56 4.52
349 350 1.444212 CTGCCGGCGAAACATTTGG 60.444 57.895 23.90 0.00 0.00 3.28
350 351 2.088178 GCTGCCGGCGAAACATTTG 61.088 57.895 23.90 4.04 0.00 2.32
351 352 2.258286 GCTGCCGGCGAAACATTT 59.742 55.556 23.90 0.00 0.00 2.32
352 353 3.747976 GGCTGCCGGCGAAACATT 61.748 61.111 23.90 0.00 42.94 2.71
362 363 4.020617 TTGTCTGAGGGGCTGCCG 62.021 66.667 13.40 0.00 0.00 5.69
363 364 2.360475 GTTGTCTGAGGGGCTGCC 60.360 66.667 11.05 11.05 0.00 4.85
364 365 2.731691 TTCGTTGTCTGAGGGGCTGC 62.732 60.000 0.00 0.00 0.00 5.25
365 366 0.250295 TTTCGTTGTCTGAGGGGCTG 60.250 55.000 0.00 0.00 0.00 4.85
366 367 0.472471 TTTTCGTTGTCTGAGGGGCT 59.528 50.000 0.00 0.00 0.00 5.19
367 368 1.314730 TTTTTCGTTGTCTGAGGGGC 58.685 50.000 0.00 0.00 0.00 5.80
391 392 0.463620 GCTGTTGAGCCTCCTAGGAG 59.536 60.000 29.27 29.27 37.67 3.69
392 393 2.596776 GCTGTTGAGCCTCCTAGGA 58.403 57.895 11.98 11.98 37.67 2.94
401 402 0.392729 AGCATCTCCAGCTGTTGAGC 60.393 55.000 13.81 13.90 46.64 4.26
402 403 1.654317 GAGCATCTCCAGCTGTTGAG 58.346 55.000 13.81 12.98 43.58 3.02
403 404 3.849002 GAGCATCTCCAGCTGTTGA 57.151 52.632 13.81 10.54 43.58 3.18
441 442 4.068599 CACTTTCTCCACTTCCTTCCTTC 58.931 47.826 0.00 0.00 0.00 3.46
442 443 3.181439 CCACTTTCTCCACTTCCTTCCTT 60.181 47.826 0.00 0.00 0.00 3.36
443 444 2.373502 CCACTTTCTCCACTTCCTTCCT 59.626 50.000 0.00 0.00 0.00 3.36
444 445 2.106684 ACCACTTTCTCCACTTCCTTCC 59.893 50.000 0.00 0.00 0.00 3.46
496 497 0.472471 TGTGGTCAAACAGTCTCCCC 59.528 55.000 0.00 0.00 0.00 4.81
588 594 4.459089 GAGGAGAGGCACGTGGGC 62.459 72.222 18.88 10.45 43.80 5.36
589 595 4.135153 CGAGGAGAGGCACGTGGG 62.135 72.222 18.88 0.00 0.00 4.61
598 604 0.108804 TTTTGCCGTAGCGAGGAGAG 60.109 55.000 0.00 0.00 44.31 3.20
641 647 0.962356 ATCTCCACAAAGGCGGCAAG 60.962 55.000 13.08 2.36 37.29 4.01
654 660 2.108425 AGACCGAGGCTGTATATCTCCA 59.892 50.000 0.00 0.00 0.00 3.86
655 661 2.797786 AGACCGAGGCTGTATATCTCC 58.202 52.381 0.00 0.00 0.00 3.71
656 662 3.570550 ACAAGACCGAGGCTGTATATCTC 59.429 47.826 0.00 0.00 0.00 2.75
657 663 3.567397 ACAAGACCGAGGCTGTATATCT 58.433 45.455 0.00 0.00 0.00 1.98
658 664 4.613167 CGTACAAGACCGAGGCTGTATATC 60.613 50.000 0.00 0.00 0.00 1.63
659 665 3.252701 CGTACAAGACCGAGGCTGTATAT 59.747 47.826 0.00 0.00 0.00 0.86
660 666 2.615447 CGTACAAGACCGAGGCTGTATA 59.385 50.000 0.00 0.00 0.00 1.47
661 667 1.404391 CGTACAAGACCGAGGCTGTAT 59.596 52.381 0.00 0.00 0.00 2.29
662 668 0.806868 CGTACAAGACCGAGGCTGTA 59.193 55.000 0.00 0.00 0.00 2.74
663 669 1.177256 ACGTACAAGACCGAGGCTGT 61.177 55.000 0.00 0.00 0.00 4.40
664 670 0.456312 GACGTACAAGACCGAGGCTG 60.456 60.000 0.00 0.00 0.00 4.85
665 671 0.892358 TGACGTACAAGACCGAGGCT 60.892 55.000 0.00 0.00 0.00 4.58
666 672 0.731855 GTGACGTACAAGACCGAGGC 60.732 60.000 0.00 0.00 0.00 4.70
667 673 0.109412 GGTGACGTACAAGACCGAGG 60.109 60.000 0.00 0.00 0.00 4.63
670 676 1.443194 CGGGTGACGTACAAGACCG 60.443 63.158 0.00 0.72 36.67 4.79
686 692 1.226030 GGGAAAAGGTCACGTCACGG 61.226 60.000 0.35 0.00 0.00 4.94
706 713 2.667199 AACTTGGGGCGCACGTAC 60.667 61.111 13.92 0.00 0.00 3.67
707 714 2.666862 CAACTTGGGGCGCACGTA 60.667 61.111 13.92 0.00 0.00 3.57
731 739 7.254898 GGAAAAATCAAAGCAAAAGAAGAAGGG 60.255 37.037 0.00 0.00 0.00 3.95
749 757 3.240631 GCTGAATTAAGCGCGGAAAAATC 59.759 43.478 8.83 0.00 32.56 2.17
762 779 3.258872 ACTTGGCATGCAAGCTGAATTAA 59.741 39.130 21.36 0.05 33.23 1.40
763 780 2.827322 ACTTGGCATGCAAGCTGAATTA 59.173 40.909 21.36 0.00 33.23 1.40
764 781 1.621814 ACTTGGCATGCAAGCTGAATT 59.378 42.857 21.36 1.91 33.23 2.17
765 782 1.203994 GACTTGGCATGCAAGCTGAAT 59.796 47.619 21.36 5.04 33.23 2.57
787 808 1.936547 GCCAACGGATGATCAGACTTC 59.063 52.381 0.09 0.00 0.00 3.01
802 823 5.228665 GGTCGTTTATATAGAGAGGCCAAC 58.771 45.833 5.01 0.00 0.00 3.77
810 856 2.415090 CCGGCCGGTCGTTTATATAGAG 60.415 54.545 36.64 3.33 0.00 2.43
859 905 2.218603 GGGACTTGTGTAGTTGTGTGG 58.781 52.381 0.00 0.00 37.17 4.17
863 909 3.284617 GGTTTGGGACTTGTGTAGTTGT 58.715 45.455 0.00 0.00 37.17 3.32
864 910 3.283751 TGGTTTGGGACTTGTGTAGTTG 58.716 45.455 0.00 0.00 37.17 3.16
865 911 3.655615 TGGTTTGGGACTTGTGTAGTT 57.344 42.857 0.00 0.00 37.17 2.24
898 945 2.888212 AGGAGCCTAGCTAGGATGAAG 58.112 52.381 38.74 15.09 43.22 3.02
1008 1078 2.035632 ACGAAGTCTCCTCCCATCATC 58.964 52.381 0.00 0.00 29.74 2.92
1113 1186 1.018226 CCTTCTCCGTGCTGCTCTTG 61.018 60.000 0.00 0.00 0.00 3.02
1149 1222 0.459934 CAGCAGCCTTCTTCTCTCCG 60.460 60.000 0.00 0.00 0.00 4.63
1187 1269 1.754234 CCAAAGAATCGCCCCCTGG 60.754 63.158 0.00 0.00 0.00 4.45
1194 1276 1.382522 TCATGAGGCCAAAGAATCGC 58.617 50.000 5.01 0.00 0.00 4.58
1195 1277 3.273434 TCTTCATGAGGCCAAAGAATCG 58.727 45.455 5.01 0.00 0.00 3.34
1246 1328 2.834638 ATTCATCAAGGGGAAGTGGG 57.165 50.000 0.00 0.00 0.00 4.61
1260 1345 4.821260 TGGCATCGCAAATACAGTATTCAT 59.179 37.500 6.26 0.00 0.00 2.57
1262 1347 4.527564 GTGGCATCGCAAATACAGTATTC 58.472 43.478 6.26 0.00 0.00 1.75
1305 1420 1.066303 CACACGCTCCTAGCTAGAAGG 59.934 57.143 22.70 8.64 39.60 3.46
1368 1500 5.652994 AAAGGTTTTGCTTTACACACTCA 57.347 34.783 0.00 0.00 0.00 3.41
1412 1546 3.489785 ACTCTTCGCGTAACTTTTGTCAG 59.510 43.478 5.77 0.00 0.00 3.51
1484 1618 1.891919 AGCAGAAACGGCTTCGCAA 60.892 52.632 13.98 0.00 38.81 4.85
1545 1693 1.398692 TGGGACCTTGTTTGAACAGC 58.601 50.000 0.00 0.00 40.50 4.40
1644 1920 0.748367 GTTCGCTGGGGAATTCCTCC 60.748 60.000 22.01 20.69 44.54 4.30
1719 1995 7.298122 ACAGCATGACATTTCGTTTACTTTAG 58.702 34.615 0.00 0.00 39.69 1.85
1724 2000 5.685511 ACAAACAGCATGACATTTCGTTTAC 59.314 36.000 0.00 0.00 39.69 2.01
1727 2003 4.305989 ACAAACAGCATGACATTTCGTT 57.694 36.364 0.00 0.00 39.69 3.85
1730 2006 6.586868 TTTCAACAAACAGCATGACATTTC 57.413 33.333 0.00 0.00 39.69 2.17
1736 2012 3.490155 CGCATTTTCAACAAACAGCATGA 59.510 39.130 0.00 0.00 39.69 3.07
1743 2019 3.648009 TGGGATCGCATTTTCAACAAAC 58.352 40.909 8.63 0.00 0.00 2.93
1745 2021 4.327982 TTTGGGATCGCATTTTCAACAA 57.672 36.364 13.85 0.00 0.00 2.83
1752 2028 5.461032 TTTAGTGTTTTGGGATCGCATTT 57.539 34.783 13.85 0.00 0.00 2.32
1755 2031 3.632604 TGTTTTAGTGTTTTGGGATCGCA 59.367 39.130 8.63 8.63 0.00 5.10
1796 2072 6.183360 GCAAAAAGAGTGAGAAGGCGTAATAT 60.183 38.462 0.00 0.00 0.00 1.28
1803 2079 5.635417 ATTAGCAAAAAGAGTGAGAAGGC 57.365 39.130 0.00 0.00 0.00 4.35
1852 2128 6.873076 TCCCAATGAAGCAAATTAATTGACAC 59.127 34.615 0.39 0.00 40.90 3.67
1951 2227 8.635983 GTTTATGCTATCGTCCAAAAGAAAAAC 58.364 33.333 0.00 0.00 0.00 2.43
1955 2231 7.174253 AGTTGTTTATGCTATCGTCCAAAAGAA 59.826 33.333 0.00 0.00 0.00 2.52
1956 2232 6.653320 AGTTGTTTATGCTATCGTCCAAAAGA 59.347 34.615 0.00 0.00 0.00 2.52
1957 2233 6.842163 AGTTGTTTATGCTATCGTCCAAAAG 58.158 36.000 0.00 0.00 0.00 2.27
1962 2238 5.581085 AGACAAGTTGTTTATGCTATCGTCC 59.419 40.000 10.45 0.00 0.00 4.79
1963 2239 6.648725 AGACAAGTTGTTTATGCTATCGTC 57.351 37.500 10.45 0.00 0.00 4.20
1969 2245 4.823989 AGAGCAAGACAAGTTGTTTATGCT 59.176 37.500 28.91 28.91 42.36 3.79
1973 2249 4.689071 TCGAGAGCAAGACAAGTTGTTTA 58.311 39.130 10.45 0.00 0.00 2.01
2036 2312 8.693542 GCCTTGCCATCATAATTAAATATCAC 57.306 34.615 0.00 0.00 0.00 3.06
2077 2353 1.654105 CGACATTTCTTTCGACCGGAG 59.346 52.381 9.46 0.85 37.43 4.63
2081 2357 1.463444 CCCACGACATTTCTTTCGACC 59.537 52.381 0.00 0.00 38.63 4.79
2089 2365 2.046285 CCTGCCCCCACGACATTTC 61.046 63.158 0.00 0.00 0.00 2.17
2145 2421 1.668294 CATCTAGCCCCCTAGCACG 59.332 63.158 0.00 0.00 40.73 5.34
2147 2423 2.210013 CGCATCTAGCCCCCTAGCA 61.210 63.158 0.00 0.00 40.73 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.