Multiple sequence alignment - TraesCS6A01G063300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G063300 chr6A 100.000 4603 0 0 606 5208 33958001 33953399 0.000000e+00 8501.0
1 TraesCS6A01G063300 chr6A 100.000 154 0 0 1 154 33958606 33958453 8.540000e-73 285.0
2 TraesCS6A01G063300 chr6D 92.922 2529 117 27 982 3489 28696574 28699061 0.000000e+00 3622.0
3 TraesCS6A01G063300 chr6D 92.378 1745 95 20 3485 5208 28699294 28701021 0.000000e+00 2451.0
4 TraesCS6A01G063300 chr6D 84.673 398 35 13 2230 2619 458372948 458372569 1.770000e-99 374.0
5 TraesCS6A01G063300 chr6D 82.303 356 36 12 606 944 28696248 28696593 3.070000e-72 283.0
6 TraesCS6A01G063300 chr6B 92.754 1670 90 14 3559 5208 61495183 61493525 0.000000e+00 2385.0
7 TraesCS6A01G063300 chr6B 88.410 1648 111 38 970 2594 61497714 61496124 0.000000e+00 1912.0
8 TraesCS6A01G063300 chr6B 90.106 849 63 10 2656 3489 61496112 61495270 0.000000e+00 1083.0
9 TraesCS6A01G063300 chr6B 87.786 786 68 15 1501 2279 35064250 35065014 0.000000e+00 894.0
10 TraesCS6A01G063300 chr6B 83.333 474 46 19 985 1448 35063788 35064238 1.750000e-109 407.0
11 TraesCS6A01G063300 chr6B 84.298 363 41 9 606 956 61498041 61497683 1.800000e-89 340.0
12 TraesCS6A01G063300 chr3A 87.862 1104 99 22 1501 2594 94169086 94170164 0.000000e+00 1264.0
13 TraesCS6A01G063300 chr3A 90.528 644 48 7 4330 4970 94173241 94173874 0.000000e+00 839.0
14 TraesCS6A01G063300 chr3A 93.613 548 33 1 3556 4103 94172426 94172971 0.000000e+00 817.0
15 TraesCS6A01G063300 chr3A 92.761 373 24 2 3112 3484 94171969 94172338 2.130000e-148 536.0
16 TraesCS6A01G063300 chr3A 85.339 457 45 11 2653 3094 94170173 94170622 2.210000e-123 453.0
17 TraesCS6A01G063300 chr3A 82.530 332 34 16 1002 1322 94163105 94163423 2.390000e-68 270.0
18 TraesCS6A01G063300 chr5D 87.783 1105 99 23 1501 2594 539739963 539741042 0.000000e+00 1260.0
19 TraesCS6A01G063300 chr5D 89.074 842 69 14 2658 3484 539741056 539741889 0.000000e+00 1024.0
20 TraesCS6A01G063300 chr5D 89.955 667 56 7 4305 4968 539742825 539743483 0.000000e+00 850.0
21 TraesCS6A01G063300 chr5D 93.621 533 33 1 3556 4088 539741977 539742508 0.000000e+00 795.0
22 TraesCS6A01G063300 chr5D 82.713 457 45 20 1002 1448 539739519 539739951 4.920000e-100 375.0
23 TraesCS6A01G063300 chr5D 88.235 68 7 1 833 900 539739447 539739513 4.320000e-11 80.5
24 TraesCS6A01G063300 chr3B 87.830 1060 103 17 1546 2594 735000302 735001346 0.000000e+00 1219.0
25 TraesCS6A01G063300 chr3B 88.731 843 69 13 2658 3484 735001360 735002192 0.000000e+00 1007.0
26 TraesCS6A01G063300 chr3B 93.431 548 36 0 3556 4103 735002280 735002827 0.000000e+00 813.0
27 TraesCS6A01G063300 chr3B 88.593 675 63 8 4308 4977 735003114 735003779 0.000000e+00 808.0
28 TraesCS6A01G063300 chr3B 90.085 353 29 6 4628 4977 735004250 735004599 2.210000e-123 453.0
29 TraesCS6A01G063300 chr3B 82.713 457 45 20 1002 1448 734999824 735000256 4.920000e-100 375.0
30 TraesCS6A01G063300 chr1A 87.252 1059 111 16 1546 2594 17878154 17879198 0.000000e+00 1186.0
31 TraesCS6A01G063300 chr1A 89.118 680 61 7 4301 4977 17884554 17885223 0.000000e+00 833.0
32 TraesCS6A01G063300 chr1A 91.058 548 43 3 3556 4103 17883996 17884537 0.000000e+00 736.0
33 TraesCS6A01G063300 chr1A 91.991 437 32 2 3048 3484 17883475 17883908 1.240000e-170 610.0
34 TraesCS6A01G063300 chr1A 83.413 416 45 14 2659 3058 17879213 17879620 1.070000e-96 364.0
35 TraesCS6A01G063300 chr1A 78.384 458 51 25 1002 1448 17877687 17878107 2.410000e-63 254.0
36 TraesCS6A01G063300 chr1A 89.706 68 6 1 833 900 17877615 17877681 9.290000e-13 86.1
37 TraesCS6A01G063300 chr2B 87.659 786 70 15 1501 2279 738172075 738171310 0.000000e+00 889.0
38 TraesCS6A01G063300 chr2B 83.229 477 47 19 985 1451 738172537 738172084 1.750000e-109 407.0
39 TraesCS6A01G063300 chr2D 88.694 628 59 9 4582 5206 248776463 248777081 0.000000e+00 756.0
40 TraesCS6A01G063300 chr2D 87.422 644 79 2 3517 4159 248759978 248760620 0.000000e+00 739.0
41 TraesCS6A01G063300 chr2D 84.426 610 81 9 2887 3489 248740917 248741519 5.810000e-164 588.0
42 TraesCS6A01G063300 chr2A 86.335 644 85 3 3517 4159 288982920 288983561 0.000000e+00 699.0
43 TraesCS6A01G063300 chr2A 78.142 915 104 45 2160 3023 38781109 38780240 1.300000e-135 494.0
44 TraesCS6A01G063300 chr5A 78.118 914 106 43 2160 3023 552876927 552876058 1.300000e-135 494.0
45 TraesCS6A01G063300 chrUn 83.333 474 46 19 985 1448 391731947 391732397 1.750000e-109 407.0
46 TraesCS6A01G063300 chr4D 84.673 398 35 13 2230 2619 440272502 440272881 1.770000e-99 374.0
47 TraesCS6A01G063300 chr7D 82.821 390 39 13 2089 2463 53728242 53727866 1.810000e-84 324.0
48 TraesCS6A01G063300 chr7A 78.715 249 24 14 2050 2271 139199044 139198798 7.030000e-29 139.0
49 TraesCS6A01G063300 chr7A 82.759 87 11 2 28 114 19363464 19363546 2.010000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G063300 chr6A 33953399 33958606 5207 True 4393.000000 8501 100.000000 1 5208 2 chr6A.!!$R1 5207
1 TraesCS6A01G063300 chr6D 28696248 28701021 4773 False 2118.666667 3622 89.201000 606 5208 3 chr6D.!!$F1 4602
2 TraesCS6A01G063300 chr6B 61493525 61498041 4516 True 1430.000000 2385 88.892000 606 5208 4 chr6B.!!$R1 4602
3 TraesCS6A01G063300 chr6B 35063788 35065014 1226 False 650.500000 894 85.559500 985 2279 2 chr6B.!!$F1 1294
4 TraesCS6A01G063300 chr3A 94169086 94173874 4788 False 781.800000 1264 90.020600 1501 4970 5 chr3A.!!$F2 3469
5 TraesCS6A01G063300 chr5D 539739447 539743483 4036 False 730.750000 1260 88.563500 833 4968 6 chr5D.!!$F1 4135
6 TraesCS6A01G063300 chr3B 734999824 735004599 4775 False 779.166667 1219 88.563833 1002 4977 6 chr3B.!!$F1 3975
7 TraesCS6A01G063300 chr1A 17877615 17885223 7608 False 581.300000 1186 87.274571 833 4977 7 chr1A.!!$F1 4144
8 TraesCS6A01G063300 chr2B 738171310 738172537 1227 True 648.000000 889 85.444000 985 2279 2 chr2B.!!$R1 1294
9 TraesCS6A01G063300 chr2D 248776463 248777081 618 False 756.000000 756 88.694000 4582 5206 1 chr2D.!!$F3 624
10 TraesCS6A01G063300 chr2D 248759978 248760620 642 False 739.000000 739 87.422000 3517 4159 1 chr2D.!!$F2 642
11 TraesCS6A01G063300 chr2D 248740917 248741519 602 False 588.000000 588 84.426000 2887 3489 1 chr2D.!!$F1 602
12 TraesCS6A01G063300 chr2A 288982920 288983561 641 False 699.000000 699 86.335000 3517 4159 1 chr2A.!!$F1 642
13 TraesCS6A01G063300 chr2A 38780240 38781109 869 True 494.000000 494 78.142000 2160 3023 1 chr2A.!!$R1 863
14 TraesCS6A01G063300 chr5A 552876058 552876927 869 True 494.000000 494 78.118000 2160 3023 1 chr5A.!!$R1 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.030773 GCGAGCACAGTGGATATCGA 59.969 55.0 1.84 0.0 32.13 3.59 F
695 699 0.388134 GTAAGGCGACGAAGAGCACA 60.388 55.0 0.00 0.0 36.58 4.57 F
1385 1433 0.672401 TTGCGAAAGTAAGGAGCCCG 60.672 55.0 0.00 0.0 0.00 6.13 F
3105 7098 0.176910 TCCGGCTCGCAATATGTTCA 59.823 50.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 1853 0.970937 TAGTTGAGCACCTCCTCCGG 60.971 60.0 0.00 0.00 0.00 5.14 R
2514 2595 1.390565 AGATGCAGCATCCTGAAAGC 58.609 50.0 28.57 5.12 41.36 3.51 R
3376 8699 0.179108 GGTACGTGCTGGTGATCCTC 60.179 60.0 3.01 0.00 34.23 3.71 R
5061 11582 0.610232 AGGAGTTGTTGAGCATGGGC 60.610 55.0 0.00 0.00 41.61 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.672714 CACTACTCGTACTTGCTTGCA 58.327 47.619 0.00 0.00 0.00 4.08
21 22 2.408704 CACTACTCGTACTTGCTTGCAC 59.591 50.000 0.00 0.00 0.00 4.57
22 23 2.035449 ACTACTCGTACTTGCTTGCACA 59.965 45.455 0.00 0.00 0.00 4.57
23 24 1.502231 ACTCGTACTTGCTTGCACAG 58.498 50.000 0.00 0.00 0.00 3.66
24 25 1.202533 ACTCGTACTTGCTTGCACAGT 60.203 47.619 12.36 12.36 0.00 3.55
25 26 1.193203 CTCGTACTTGCTTGCACAGTG 59.807 52.381 15.38 0.00 0.00 3.66
26 27 0.235665 CGTACTTGCTTGCACAGTGG 59.764 55.000 1.84 7.78 0.00 4.00
27 28 0.593128 GTACTTGCTTGCACAGTGGG 59.407 55.000 1.84 0.00 0.00 4.61
28 29 0.182537 TACTTGCTTGCACAGTGGGT 59.817 50.000 1.84 4.38 0.00 4.51
29 30 0.684153 ACTTGCTTGCACAGTGGGTT 60.684 50.000 1.84 0.00 0.00 4.11
30 31 0.461135 CTTGCTTGCACAGTGGGTTT 59.539 50.000 1.84 0.00 0.00 3.27
31 32 0.459489 TTGCTTGCACAGTGGGTTTC 59.541 50.000 1.84 0.00 0.00 2.78
32 33 1.008538 GCTTGCACAGTGGGTTTCG 60.009 57.895 1.84 0.00 0.00 3.46
33 34 1.444119 GCTTGCACAGTGGGTTTCGA 61.444 55.000 1.84 0.00 0.00 3.71
34 35 1.238439 CTTGCACAGTGGGTTTCGAT 58.762 50.000 1.84 0.00 0.00 3.59
35 36 0.950836 TTGCACAGTGGGTTTCGATG 59.049 50.000 1.84 0.00 0.00 3.84
36 37 0.107643 TGCACAGTGGGTTTCGATGA 59.892 50.000 1.84 0.00 0.00 2.92
37 38 0.517316 GCACAGTGGGTTTCGATGAC 59.483 55.000 1.84 0.00 0.00 3.06
38 39 0.790207 CACAGTGGGTTTCGATGACG 59.210 55.000 0.00 0.00 41.26 4.35
39 40 0.320421 ACAGTGGGTTTCGATGACGG 60.320 55.000 0.00 0.00 40.21 4.79
40 41 1.019278 CAGTGGGTTTCGATGACGGG 61.019 60.000 0.00 0.00 40.21 5.28
41 42 2.046700 TGGGTTTCGATGACGGGC 60.047 61.111 0.00 0.00 40.21 6.13
42 43 3.192922 GGGTTTCGATGACGGGCG 61.193 66.667 0.00 0.00 40.21 6.13
43 44 2.125832 GGTTTCGATGACGGGCGA 60.126 61.111 0.00 0.00 40.21 5.54
44 45 2.165301 GGTTTCGATGACGGGCGAG 61.165 63.158 0.00 0.00 37.85 5.03
45 46 2.508439 TTTCGATGACGGGCGAGC 60.508 61.111 0.00 0.00 37.85 5.03
46 47 3.289704 TTTCGATGACGGGCGAGCA 62.290 57.895 0.00 0.00 37.85 4.26
47 48 3.982372 TTCGATGACGGGCGAGCAC 62.982 63.158 0.00 0.00 37.85 4.40
48 49 4.794439 CGATGACGGGCGAGCACA 62.794 66.667 0.00 0.00 35.72 4.57
49 50 2.887568 GATGACGGGCGAGCACAG 60.888 66.667 0.00 0.00 0.00 3.66
50 51 3.649277 GATGACGGGCGAGCACAGT 62.649 63.158 0.00 0.00 0.00 3.55
51 52 3.939837 ATGACGGGCGAGCACAGTG 62.940 63.158 0.00 0.00 0.00 3.66
55 56 4.643387 GGGCGAGCACAGTGGGTT 62.643 66.667 1.84 0.00 0.00 4.11
56 57 2.594592 GGCGAGCACAGTGGGTTT 60.595 61.111 1.84 0.00 0.00 3.27
57 58 2.193536 GGCGAGCACAGTGGGTTTT 61.194 57.895 1.84 0.00 0.00 2.43
58 59 1.282875 GCGAGCACAGTGGGTTTTC 59.717 57.895 1.84 0.00 0.00 2.29
59 60 1.166531 GCGAGCACAGTGGGTTTTCT 61.167 55.000 1.84 0.00 0.00 2.52
60 61 0.588252 CGAGCACAGTGGGTTTTCTG 59.412 55.000 1.84 0.00 37.65 3.02
61 62 0.954452 GAGCACAGTGGGTTTTCTGG 59.046 55.000 1.84 0.00 36.17 3.86
62 63 1.109323 AGCACAGTGGGTTTTCTGGC 61.109 55.000 1.84 0.00 36.17 4.85
63 64 1.654220 CACAGTGGGTTTTCTGGCG 59.346 57.895 0.00 0.00 36.17 5.69
64 65 1.528309 ACAGTGGGTTTTCTGGCGG 60.528 57.895 0.00 0.00 36.17 6.13
65 66 1.528309 CAGTGGGTTTTCTGGCGGT 60.528 57.895 0.00 0.00 0.00 5.68
66 67 1.528309 AGTGGGTTTTCTGGCGGTG 60.528 57.895 0.00 0.00 0.00 4.94
67 68 2.909965 TGGGTTTTCTGGCGGTGC 60.910 61.111 0.00 0.00 0.00 5.01
68 69 2.597510 GGGTTTTCTGGCGGTGCT 60.598 61.111 0.00 0.00 0.00 4.40
69 70 2.200337 GGGTTTTCTGGCGGTGCTT 61.200 57.895 0.00 0.00 0.00 3.91
70 71 1.739667 GGTTTTCTGGCGGTGCTTT 59.260 52.632 0.00 0.00 0.00 3.51
71 72 0.597377 GGTTTTCTGGCGGTGCTTTG 60.597 55.000 0.00 0.00 0.00 2.77
72 73 0.383949 GTTTTCTGGCGGTGCTTTGA 59.616 50.000 0.00 0.00 0.00 2.69
73 74 1.107114 TTTTCTGGCGGTGCTTTGAA 58.893 45.000 0.00 0.00 0.00 2.69
74 75 0.383949 TTTCTGGCGGTGCTTTGAAC 59.616 50.000 0.00 0.00 0.00 3.18
75 76 0.465460 TTCTGGCGGTGCTTTGAACT 60.465 50.000 0.00 0.00 0.00 3.01
76 77 0.884704 TCTGGCGGTGCTTTGAACTC 60.885 55.000 0.00 0.00 0.00 3.01
77 78 1.153066 TGGCGGTGCTTTGAACTCA 60.153 52.632 0.00 0.00 0.00 3.41
78 79 1.282875 GGCGGTGCTTTGAACTCAC 59.717 57.895 0.00 0.00 0.00 3.51
79 80 1.166531 GGCGGTGCTTTGAACTCACT 61.167 55.000 0.00 0.00 0.00 3.41
80 81 0.040958 GCGGTGCTTTGAACTCACTG 60.041 55.000 0.00 0.00 39.43 3.66
81 82 0.588252 CGGTGCTTTGAACTCACTGG 59.412 55.000 0.00 0.00 34.41 4.00
82 83 0.312102 GGTGCTTTGAACTCACTGGC 59.688 55.000 0.00 0.00 0.00 4.85
83 84 1.312815 GTGCTTTGAACTCACTGGCT 58.687 50.000 0.00 0.00 0.00 4.75
84 85 2.494059 GTGCTTTGAACTCACTGGCTA 58.506 47.619 0.00 0.00 0.00 3.93
85 86 2.224314 GTGCTTTGAACTCACTGGCTAC 59.776 50.000 0.00 0.00 0.00 3.58
86 87 1.807142 GCTTTGAACTCACTGGCTACC 59.193 52.381 0.00 0.00 0.00 3.18
87 88 2.427506 CTTTGAACTCACTGGCTACCC 58.572 52.381 0.00 0.00 0.00 3.69
88 89 0.690762 TTGAACTCACTGGCTACCCC 59.309 55.000 0.00 0.00 0.00 4.95
89 90 0.178903 TGAACTCACTGGCTACCCCT 60.179 55.000 0.00 0.00 0.00 4.79
90 91 0.537653 GAACTCACTGGCTACCCCTC 59.462 60.000 0.00 0.00 0.00 4.30
91 92 0.117340 AACTCACTGGCTACCCCTCT 59.883 55.000 0.00 0.00 0.00 3.69
92 93 0.117340 ACTCACTGGCTACCCCTCTT 59.883 55.000 0.00 0.00 0.00 2.85
93 94 1.280457 CTCACTGGCTACCCCTCTTT 58.720 55.000 0.00 0.00 0.00 2.52
94 95 1.630878 CTCACTGGCTACCCCTCTTTT 59.369 52.381 0.00 0.00 0.00 2.27
95 96 1.628846 TCACTGGCTACCCCTCTTTTC 59.371 52.381 0.00 0.00 0.00 2.29
96 97 1.630878 CACTGGCTACCCCTCTTTTCT 59.369 52.381 0.00 0.00 0.00 2.52
97 98 2.040412 CACTGGCTACCCCTCTTTTCTT 59.960 50.000 0.00 0.00 0.00 2.52
98 99 2.716969 ACTGGCTACCCCTCTTTTCTTT 59.283 45.455 0.00 0.00 0.00 2.52
99 100 3.244946 ACTGGCTACCCCTCTTTTCTTTC 60.245 47.826 0.00 0.00 0.00 2.62
100 101 2.986728 TGGCTACCCCTCTTTTCTTTCT 59.013 45.455 0.00 0.00 0.00 2.52
101 102 3.397955 TGGCTACCCCTCTTTTCTTTCTT 59.602 43.478 0.00 0.00 0.00 2.52
102 103 4.011023 GGCTACCCCTCTTTTCTTTCTTC 58.989 47.826 0.00 0.00 0.00 2.87
103 104 3.685272 GCTACCCCTCTTTTCTTTCTTCG 59.315 47.826 0.00 0.00 0.00 3.79
104 105 3.859061 ACCCCTCTTTTCTTTCTTCGT 57.141 42.857 0.00 0.00 0.00 3.85
105 106 3.477530 ACCCCTCTTTTCTTTCTTCGTG 58.522 45.455 0.00 0.00 0.00 4.35
106 107 2.814336 CCCCTCTTTTCTTTCTTCGTGG 59.186 50.000 0.00 0.00 0.00 4.94
107 108 3.477530 CCCTCTTTTCTTTCTTCGTGGT 58.522 45.455 0.00 0.00 0.00 4.16
108 109 3.883489 CCCTCTTTTCTTTCTTCGTGGTT 59.117 43.478 0.00 0.00 0.00 3.67
109 110 4.261197 CCCTCTTTTCTTTCTTCGTGGTTG 60.261 45.833 0.00 0.00 0.00 3.77
110 111 4.335594 CCTCTTTTCTTTCTTCGTGGTTGT 59.664 41.667 0.00 0.00 0.00 3.32
111 112 5.526111 CCTCTTTTCTTTCTTCGTGGTTGTA 59.474 40.000 0.00 0.00 0.00 2.41
112 113 6.204882 CCTCTTTTCTTTCTTCGTGGTTGTAT 59.795 38.462 0.00 0.00 0.00 2.29
113 114 7.186021 TCTTTTCTTTCTTCGTGGTTGTATC 57.814 36.000 0.00 0.00 0.00 2.24
114 115 6.990349 TCTTTTCTTTCTTCGTGGTTGTATCT 59.010 34.615 0.00 0.00 0.00 1.98
115 116 6.539649 TTTCTTTCTTCGTGGTTGTATCTG 57.460 37.500 0.00 0.00 0.00 2.90
116 117 4.566004 TCTTTCTTCGTGGTTGTATCTGG 58.434 43.478 0.00 0.00 0.00 3.86
117 118 4.039973 TCTTTCTTCGTGGTTGTATCTGGT 59.960 41.667 0.00 0.00 0.00 4.00
118 119 5.244402 TCTTTCTTCGTGGTTGTATCTGGTA 59.756 40.000 0.00 0.00 0.00 3.25
119 120 4.445452 TCTTCGTGGTTGTATCTGGTAC 57.555 45.455 0.00 0.00 0.00 3.34
120 121 4.084287 TCTTCGTGGTTGTATCTGGTACT 58.916 43.478 0.00 0.00 34.27 2.73
121 122 3.861276 TCGTGGTTGTATCTGGTACTG 57.139 47.619 0.00 0.00 34.27 2.74
122 123 2.494471 TCGTGGTTGTATCTGGTACTGG 59.506 50.000 0.00 0.00 34.27 4.00
123 124 2.629051 GTGGTTGTATCTGGTACTGGC 58.371 52.381 0.00 0.00 34.27 4.85
124 125 1.206132 TGGTTGTATCTGGTACTGGCG 59.794 52.381 0.00 0.00 34.27 5.69
125 126 1.472728 GGTTGTATCTGGTACTGGCGG 60.473 57.143 0.00 0.00 34.27 6.13
126 127 0.828022 TTGTATCTGGTACTGGCGGG 59.172 55.000 0.00 0.00 34.27 6.13
127 128 1.069258 GTATCTGGTACTGGCGGGC 59.931 63.158 0.00 0.00 0.00 6.13
128 129 2.495409 TATCTGGTACTGGCGGGCG 61.495 63.158 0.00 0.00 0.00 6.13
129 130 2.914756 TATCTGGTACTGGCGGGCGA 62.915 60.000 0.00 0.00 0.00 5.54
130 131 4.514577 CTGGTACTGGCGGGCGAG 62.515 72.222 0.00 0.88 0.00 5.03
140 141 4.457496 CGGGCGAGCACAGTGGAT 62.457 66.667 1.84 0.00 0.00 3.41
141 142 2.900273 GGGCGAGCACAGTGGATA 59.100 61.111 1.84 0.00 0.00 2.59
142 143 1.447643 GGGCGAGCACAGTGGATAT 59.552 57.895 1.84 0.00 0.00 1.63
143 144 0.601311 GGGCGAGCACAGTGGATATC 60.601 60.000 1.84 0.00 0.00 1.63
144 145 0.941463 GGCGAGCACAGTGGATATCG 60.941 60.000 1.84 0.00 0.00 2.92
145 146 0.030773 GCGAGCACAGTGGATATCGA 59.969 55.000 1.84 0.00 32.13 3.59
146 147 1.336332 GCGAGCACAGTGGATATCGAT 60.336 52.381 2.16 2.16 32.13 3.59
147 148 2.864097 GCGAGCACAGTGGATATCGATT 60.864 50.000 1.71 0.00 32.13 3.34
148 149 3.611766 GCGAGCACAGTGGATATCGATTA 60.612 47.826 1.71 0.00 32.13 1.75
149 150 4.162072 CGAGCACAGTGGATATCGATTAG 58.838 47.826 1.71 0.00 32.13 1.73
150 151 4.489810 GAGCACAGTGGATATCGATTAGG 58.510 47.826 1.71 0.00 0.00 2.69
151 152 3.898123 AGCACAGTGGATATCGATTAGGT 59.102 43.478 1.71 0.00 0.00 3.08
152 153 4.345257 AGCACAGTGGATATCGATTAGGTT 59.655 41.667 1.71 0.00 0.00 3.50
153 154 5.057149 GCACAGTGGATATCGATTAGGTTT 58.943 41.667 1.71 0.00 0.00 3.27
632 633 1.674057 GTCCATCCCTCCATAGCCG 59.326 63.158 0.00 0.00 0.00 5.52
657 661 1.406205 GCACTACAGGCTTTCTCCCTC 60.406 57.143 0.00 0.00 0.00 4.30
658 662 1.208293 CACTACAGGCTTTCTCCCTCC 59.792 57.143 0.00 0.00 0.00 4.30
677 681 2.381961 TCCCTAAAAATGGAAGGCAGGT 59.618 45.455 0.00 0.00 0.00 4.00
678 682 3.594232 TCCCTAAAAATGGAAGGCAGGTA 59.406 43.478 0.00 0.00 0.00 3.08
685 689 1.449778 GGAAGGCAGGTAAGGCGAC 60.450 63.158 0.00 0.00 39.37 5.19
695 699 0.388134 GTAAGGCGACGAAGAGCACA 60.388 55.000 0.00 0.00 36.58 4.57
700 704 2.091112 CGACGAAGAGCACAGCCTG 61.091 63.158 0.00 0.00 0.00 4.85
701 705 1.005630 GACGAAGAGCACAGCCTGT 60.006 57.895 0.00 0.00 0.00 4.00
705 709 1.597742 GAAGAGCACAGCCTGTTCAA 58.402 50.000 0.00 0.00 35.75 2.69
711 715 2.035066 AGCACAGCCTGTTCAACAATTC 59.965 45.455 0.00 0.00 0.00 2.17
716 720 4.232221 CAGCCTGTTCAACAATTCATCAC 58.768 43.478 0.00 0.00 0.00 3.06
767 779 4.668289 TCAGTTTTGCTTCGGTTTTTCTC 58.332 39.130 0.00 0.00 0.00 2.87
774 786 4.196193 TGCTTCGGTTTTTCTCTTCTTCA 58.804 39.130 0.00 0.00 0.00 3.02
778 790 6.293680 GCTTCGGTTTTTCTCTTCTTCATTCT 60.294 38.462 0.00 0.00 0.00 2.40
780 792 8.671384 TTCGGTTTTTCTCTTCTTCATTCTAA 57.329 30.769 0.00 0.00 0.00 2.10
782 794 7.172703 TCGGTTTTTCTCTTCTTCATTCTAACC 59.827 37.037 0.00 0.00 0.00 2.85
790 803 6.341316 TCTTCTTCATTCTAACCAGAATCGG 58.659 40.000 0.00 0.00 46.50 4.18
881 895 1.314730 TTCAGGGCCGTTTGTTTCTC 58.685 50.000 0.00 0.00 0.00 2.87
890 911 0.875059 GTTTGTTTCTCGGCAGGGAG 59.125 55.000 0.00 0.00 35.32 4.30
896 917 4.168291 CTCGGCAGGGAGGAAGCC 62.168 72.222 0.00 0.00 44.89 4.35
924 945 0.764890 TGGGCTGAATCGGATTAGGG 59.235 55.000 2.65 0.00 0.00 3.53
925 946 1.056660 GGGCTGAATCGGATTAGGGA 58.943 55.000 2.65 0.00 0.00 4.20
926 947 1.420138 GGGCTGAATCGGATTAGGGAA 59.580 52.381 2.65 0.00 0.00 3.97
927 948 2.551071 GGGCTGAATCGGATTAGGGAAG 60.551 54.545 2.65 0.00 0.00 3.46
928 949 2.368875 GGCTGAATCGGATTAGGGAAGA 59.631 50.000 2.65 0.00 0.00 2.87
929 950 3.181454 GGCTGAATCGGATTAGGGAAGAA 60.181 47.826 2.65 0.00 0.00 2.52
930 951 4.061596 GCTGAATCGGATTAGGGAAGAAG 58.938 47.826 2.65 0.00 0.00 2.85
931 952 4.202264 GCTGAATCGGATTAGGGAAGAAGA 60.202 45.833 2.65 0.00 0.00 2.87
932 953 5.685075 GCTGAATCGGATTAGGGAAGAAGAA 60.685 44.000 2.65 0.00 0.00 2.52
933 954 5.918608 TGAATCGGATTAGGGAAGAAGAAG 58.081 41.667 2.65 0.00 0.00 2.85
934 955 5.661312 TGAATCGGATTAGGGAAGAAGAAGA 59.339 40.000 2.65 0.00 0.00 2.87
935 956 6.156256 TGAATCGGATTAGGGAAGAAGAAGAA 59.844 38.462 2.65 0.00 0.00 2.52
936 957 5.599999 TCGGATTAGGGAAGAAGAAGAAG 57.400 43.478 0.00 0.00 0.00 2.85
937 958 5.269991 TCGGATTAGGGAAGAAGAAGAAGA 58.730 41.667 0.00 0.00 0.00 2.87
938 959 5.720041 TCGGATTAGGGAAGAAGAAGAAGAA 59.280 40.000 0.00 0.00 0.00 2.52
939 960 6.045955 CGGATTAGGGAAGAAGAAGAAGAAG 58.954 44.000 0.00 0.00 0.00 2.85
940 961 6.127310 CGGATTAGGGAAGAAGAAGAAGAAGA 60.127 42.308 0.00 0.00 0.00 2.87
941 962 7.579723 CGGATTAGGGAAGAAGAAGAAGAAGAA 60.580 40.741 0.00 0.00 0.00 2.52
942 963 7.768582 GGATTAGGGAAGAAGAAGAAGAAGAAG 59.231 40.741 0.00 0.00 0.00 2.85
943 964 7.857404 TTAGGGAAGAAGAAGAAGAAGAAGA 57.143 36.000 0.00 0.00 0.00 2.87
944 965 6.755542 AGGGAAGAAGAAGAAGAAGAAGAA 57.244 37.500 0.00 0.00 0.00 2.52
945 966 6.768483 AGGGAAGAAGAAGAAGAAGAAGAAG 58.232 40.000 0.00 0.00 0.00 2.85
946 967 6.556874 AGGGAAGAAGAAGAAGAAGAAGAAGA 59.443 38.462 0.00 0.00 0.00 2.87
947 968 7.071824 AGGGAAGAAGAAGAAGAAGAAGAAGAA 59.928 37.037 0.00 0.00 0.00 2.52
948 969 7.387673 GGGAAGAAGAAGAAGAAGAAGAAGAAG 59.612 40.741 0.00 0.00 0.00 2.85
949 970 8.147704 GGAAGAAGAAGAAGAAGAAGAAGAAGA 58.852 37.037 0.00 0.00 0.00 2.87
950 971 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
951 972 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
952 973 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
953 974 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
954 975 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
955 976 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
956 977 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
957 978 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
958 979 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
959 980 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
960 981 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
961 982 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
962 983 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
963 984 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
964 985 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
965 986 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
966 987 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
967 988 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
968 989 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1130 1151 2.242043 CACCCTTGCTTGTTCATCCTT 58.758 47.619 0.00 0.00 0.00 3.36
1156 1177 1.750399 CTTCACAATCCCTGGGGCG 60.750 63.158 14.00 4.11 34.68 6.13
1290 1330 5.970140 TTTTTGTGACATGTCAGCATTTG 57.030 34.783 28.54 0.00 40.75 2.32
1294 1334 5.050644 TGTGACATGTCAGCATTTGATTC 57.949 39.130 28.54 13.02 40.75 2.52
1308 1352 7.599621 CAGCATTTGATTCAGATGGTTTGTTTA 59.400 33.333 16.60 0.00 35.13 2.01
1339 1383 2.094803 TGAATGCGCGAAATTCACCATT 60.095 40.909 24.94 15.88 38.73 3.16
1340 1384 2.652941 ATGCGCGAAATTCACCATTT 57.347 40.000 12.10 0.00 37.84 2.32
1341 1385 3.773860 ATGCGCGAAATTCACCATTTA 57.226 38.095 12.10 0.00 35.02 1.40
1342 1386 3.560902 TGCGCGAAATTCACCATTTAA 57.439 38.095 12.10 0.00 35.02 1.52
1367 1415 2.950309 GTTCATGCAGATGGAGCTCATT 59.050 45.455 17.19 1.00 35.97 2.57
1385 1433 0.672401 TTGCGAAAGTAAGGAGCCCG 60.672 55.000 0.00 0.00 0.00 6.13
1402 1450 2.888594 CCCGTACATTGTGGAGTACAG 58.111 52.381 0.00 0.00 41.10 2.74
1448 1499 0.753848 CGGTCCTCCCCTCTTCTCTC 60.754 65.000 0.00 0.00 0.00 3.20
1474 1525 1.609061 CGCATATTGGCAGGGTCCTAG 60.609 57.143 0.00 0.00 0.00 3.02
1523 1574 5.278907 CCTTGCATGTTTCAATGTTCCTACA 60.279 40.000 0.00 0.00 38.95 2.74
1540 1591 9.184523 TGTTCCTACAGAAAATTCTCTTTCAAA 57.815 29.630 0.00 0.00 37.70 2.69
1608 1663 3.994392 GTCGCCTGAAATGAGTGTCTTTA 59.006 43.478 0.00 0.00 0.00 1.85
1624 1679 4.458989 TGTCTTTATTGTTGTCATCAGGGC 59.541 41.667 0.00 0.00 0.00 5.19
1677 1732 4.684724 GAGGGAGGGGACATGTATGTATA 58.315 47.826 0.00 0.00 41.95 1.47
1716 1771 4.464008 AGCTCTGAACTGAATTTGGAACA 58.536 39.130 0.00 0.00 0.00 3.18
1798 1853 1.433471 GCTAACGGCAGCCATTTCC 59.567 57.895 13.30 0.00 41.35 3.13
1834 1895 7.759886 TGCTCAACTACTCTGTAATATGTGTTC 59.240 37.037 0.00 0.00 0.00 3.18
1843 1904 8.251721 ACTCTGTAATATGTGTTCTTCAGTACC 58.748 37.037 0.00 0.00 0.00 3.34
1857 1918 4.826274 TCAGTACCTAGCTGCAAATTCT 57.174 40.909 1.02 0.00 34.21 2.40
1868 1929 5.947443 AGCTGCAAATTCTGATTACTGAAC 58.053 37.500 1.02 0.00 36.94 3.18
2388 2464 1.679944 CCCAGTTACATGTGCCCTGAG 60.680 57.143 9.11 0.00 0.00 3.35
2491 2572 4.877823 TGTCTTGCTCTGAATATCGCATTT 59.122 37.500 0.00 0.00 31.77 2.32
2493 2574 5.906285 GTCTTGCTCTGAATATCGCATTTTC 59.094 40.000 0.00 0.00 31.77 2.29
2514 2595 2.681848 CCTCTTGGCTAAACATCTGCAG 59.318 50.000 7.63 7.63 0.00 4.41
2515 2596 2.086869 TCTTGGCTAAACATCTGCAGC 58.913 47.619 9.47 0.00 0.00 5.25
2635 2732 5.336744 CGCAAAAGAAAAGTTACAGTTCCA 58.663 37.500 0.00 0.00 0.00 3.53
2638 2735 6.420903 GCAAAAGAAAAGTTACAGTTCCATCC 59.579 38.462 0.00 0.00 0.00 3.51
2666 2765 4.834357 TTGTGACATGATGTTTCACCAG 57.166 40.909 12.92 0.00 33.85 4.00
2800 2905 1.176527 AGCACCTGCAACGCATTAAT 58.823 45.000 0.00 0.00 45.16 1.40
2842 2954 8.242053 AGCTATTCATGACATCTGAAAAGTTTG 58.758 33.333 0.00 0.00 36.30 2.93
2863 2975 7.381139 AGTTTGTAACATGTTTATTTTCTGCCG 59.619 33.333 17.78 0.00 0.00 5.69
2905 3019 1.298116 CATGCTGCGCAGAAATCCG 60.298 57.895 40.21 16.65 43.65 4.18
2930 3044 3.895041 TCACAGACCAAGTGTATGAGTCA 59.105 43.478 0.00 0.00 38.49 3.41
2931 3045 3.990469 CACAGACCAAGTGTATGAGTCAC 59.010 47.826 0.00 0.00 38.49 3.67
2950 3064 8.704668 TGAGTCACATTTTCCTAGAGCATATTA 58.295 33.333 0.00 0.00 0.00 0.98
2951 3065 9.717942 GAGTCACATTTTCCTAGAGCATATTAT 57.282 33.333 0.00 0.00 0.00 1.28
3003 3131 2.021457 TGCACATCTCATTGCCTCATG 58.979 47.619 0.00 0.00 38.00 3.07
3105 7098 0.176910 TCCGGCTCGCAATATGTTCA 59.823 50.000 0.00 0.00 0.00 3.18
3212 8535 7.164122 AGAGTCATTCATTTAAAGCACAGAGA 58.836 34.615 0.00 0.00 0.00 3.10
3332 8655 1.053424 TACCAGTCCAGGTCACCAAC 58.947 55.000 0.00 0.00 42.06 3.77
3354 8677 3.665323 CGAAGTTGTCAAAGAAGCGATGG 60.665 47.826 0.00 0.00 0.00 3.51
3386 8709 6.070656 ACATTCAAAAGAAAGAGGATCACCA 58.929 36.000 0.00 0.00 37.82 4.17
3395 8718 0.179108 GAGGATCACCAGCACGTACC 60.179 60.000 0.00 0.00 38.94 3.34
3398 8721 1.612442 ATCACCAGCACGTACCCCT 60.612 57.895 0.00 0.00 0.00 4.79
3413 8736 2.756283 CCTCGAAGGGCGTCCTCT 60.756 66.667 10.20 0.00 44.07 3.69
3540 9099 6.766467 TGTTTGAAGACTTCCTTTTCCTAGTC 59.234 38.462 12.66 0.00 37.79 2.59
3637 9196 5.159273 ACCTTTTGTTGTTTTGACACCAT 57.841 34.783 0.00 0.00 0.00 3.55
3653 9215 1.454976 CATCAGCCTCCCCCATCAG 59.545 63.158 0.00 0.00 0.00 2.90
3655 9217 2.275715 ATCAGCCTCCCCCATCAGGA 62.276 60.000 0.00 0.00 38.24 3.86
3667 9241 2.709934 CCCATCAGGATCTTCAGTGGAT 59.290 50.000 0.00 0.00 38.24 3.41
3743 9317 0.605589 TGAGAAGAGGCGAGTCGTCA 60.606 55.000 20.81 7.78 32.13 4.35
3756 9330 3.390135 GAGTCGTCAACATTCTCACCAA 58.610 45.455 0.00 0.00 0.00 3.67
3860 9434 4.776435 TTGTATCCCATCATGAAGCTCA 57.224 40.909 0.00 0.00 0.00 4.26
3886 9464 4.509230 CCACCATCTATCACTGACAAATCG 59.491 45.833 0.00 0.00 0.00 3.34
3889 9471 6.481313 CACCATCTATCACTGACAAATCGATT 59.519 38.462 4.39 4.39 0.00 3.34
4021 9603 2.616510 CGATTGGAGGCAGAAGAGGTTT 60.617 50.000 0.00 0.00 0.00 3.27
4103 9689 2.805099 CAGTTGCTCCAACAAGAGAGAC 59.195 50.000 10.34 0.00 45.66 3.36
4387 10068 8.735692 AAACCATGTTGACATTTTGAGAAAAT 57.264 26.923 0.00 0.00 41.57 1.82
4416 10097 9.088512 CAGTTCTTGGATGTACTTCAATACTAC 57.911 37.037 10.60 2.35 0.00 2.73
4439 10126 6.917533 ACAAGTTATCTGAAGATTTTGCTGG 58.082 36.000 0.00 0.00 36.05 4.85
4440 10127 5.573337 AGTTATCTGAAGATTTTGCTGGC 57.427 39.130 0.00 0.00 36.05 4.85
4470 10157 6.811253 ATAAAGTTGTAATTCGGCTGTTCA 57.189 33.333 0.00 0.00 0.00 3.18
4487 10174 7.754924 CGGCTGTTCATGTTTTTGTATTTCTAT 59.245 33.333 0.00 0.00 0.00 1.98
4521 10209 1.729586 TTCAGTGTAGGCCCTTCTGT 58.270 50.000 0.00 0.00 0.00 3.41
4532 10220 3.013219 GGCCCTTCTGTCTTGAAAGATC 58.987 50.000 0.00 0.00 37.39 2.75
4533 10221 3.560025 GGCCCTTCTGTCTTGAAAGATCA 60.560 47.826 0.00 0.00 37.39 2.92
4534 10222 3.438434 GCCCTTCTGTCTTGAAAGATCAC 59.562 47.826 0.00 0.00 37.39 3.06
4535 10223 4.645535 CCCTTCTGTCTTGAAAGATCACA 58.354 43.478 0.00 0.00 37.39 3.58
4536 10224 5.251764 CCCTTCTGTCTTGAAAGATCACAT 58.748 41.667 0.00 0.00 37.39 3.21
4537 10225 5.709164 CCCTTCTGTCTTGAAAGATCACATT 59.291 40.000 0.00 0.00 37.39 2.71
4544 10232 6.487668 TGTCTTGAAAGATCACATTCACATGT 59.512 34.615 7.78 0.00 39.73 3.21
4677 10368 5.439721 AGCATGTCAGGTAATGAATAAGCA 58.560 37.500 0.00 0.00 40.43 3.91
4679 10370 6.206243 AGCATGTCAGGTAATGAATAAGCATC 59.794 38.462 0.00 0.00 40.43 3.91
4692 10383 2.687700 AAGCATCTGGTGAGCTGTAG 57.312 50.000 0.00 0.00 38.86 2.74
4747 10438 7.435192 CCCAAGTTTATTCAAAGTGTTGTTCTC 59.565 37.037 0.00 0.00 36.07 2.87
4764 10455 0.580578 CTCAGAAGATGATTGGCGCG 59.419 55.000 0.00 0.00 37.28 6.86
4802 10495 6.262720 TGTCATTGACTTGTCATGATCACAAA 59.737 34.615 17.26 0.00 33.36 2.83
4840 10534 2.468532 CGGTGTTTTATCCGCAATCC 57.531 50.000 0.00 0.00 40.28 3.01
4851 10545 2.985896 TCCGCAATCCGATTCTCTTTT 58.014 42.857 0.00 0.00 40.02 2.27
4852 10546 2.936498 TCCGCAATCCGATTCTCTTTTC 59.064 45.455 0.00 0.00 40.02 2.29
4854 10548 3.126858 CCGCAATCCGATTCTCTTTTCAA 59.873 43.478 0.00 0.00 40.02 2.69
4855 10549 4.337763 CGCAATCCGATTCTCTTTTCAAG 58.662 43.478 0.00 0.00 40.02 3.02
4862 11377 5.068460 TCCGATTCTCTTTTCAAGCCAAAAA 59.932 36.000 0.00 0.00 0.00 1.94
4925 11442 6.720112 ATAGAACAACATCATTCCCCATTG 57.280 37.500 0.00 0.00 0.00 2.82
4985 11506 1.227527 CACCGACAACAGCTGACCA 60.228 57.895 23.35 0.00 0.00 4.02
4990 11511 2.541588 CCGACAACAGCTGACCAAAAAG 60.542 50.000 23.35 3.62 0.00 2.27
5020 11541 0.460459 TTTTGACACTGACGCCGTCA 60.460 50.000 20.04 20.04 40.50 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.035449 TGTGCAAGCAAGTACGAGTAGT 59.965 45.455 0.00 0.00 0.00 2.73
2 3 2.663602 CTGTGCAAGCAAGTACGAGTAG 59.336 50.000 0.00 0.00 0.00 2.57
3 4 2.035449 ACTGTGCAAGCAAGTACGAGTA 59.965 45.455 0.00 0.00 0.00 2.59
4 5 1.202533 ACTGTGCAAGCAAGTACGAGT 60.203 47.619 0.00 0.00 0.00 4.18
5 6 1.193203 CACTGTGCAAGCAAGTACGAG 59.807 52.381 0.00 0.00 0.00 4.18
6 7 1.217001 CACTGTGCAAGCAAGTACGA 58.783 50.000 0.00 0.00 0.00 3.43
8 9 0.593128 CCCACTGTGCAAGCAAGTAC 59.407 55.000 1.29 0.00 0.00 2.73
9 10 0.182537 ACCCACTGTGCAAGCAAGTA 59.817 50.000 1.29 0.00 0.00 2.24
10 11 0.684153 AACCCACTGTGCAAGCAAGT 60.684 50.000 1.29 0.39 0.00 3.16
11 12 0.461135 AAACCCACTGTGCAAGCAAG 59.539 50.000 1.29 0.00 0.00 4.01
12 13 0.459489 GAAACCCACTGTGCAAGCAA 59.541 50.000 1.29 0.00 0.00 3.91
13 14 1.723608 CGAAACCCACTGTGCAAGCA 61.724 55.000 1.29 0.00 0.00 3.91
14 15 1.008538 CGAAACCCACTGTGCAAGC 60.009 57.895 1.29 0.00 0.00 4.01
15 16 1.069022 CATCGAAACCCACTGTGCAAG 60.069 52.381 1.29 0.00 0.00 4.01
16 17 0.950836 CATCGAAACCCACTGTGCAA 59.049 50.000 1.29 0.00 0.00 4.08
17 18 0.107643 TCATCGAAACCCACTGTGCA 59.892 50.000 1.29 0.00 0.00 4.57
18 19 0.517316 GTCATCGAAACCCACTGTGC 59.483 55.000 1.29 0.00 0.00 4.57
19 20 0.790207 CGTCATCGAAACCCACTGTG 59.210 55.000 0.00 0.00 39.71 3.66
20 21 0.320421 CCGTCATCGAAACCCACTGT 60.320 55.000 0.00 0.00 39.71 3.55
21 22 1.019278 CCCGTCATCGAAACCCACTG 61.019 60.000 0.00 0.00 39.71 3.66
22 23 1.295423 CCCGTCATCGAAACCCACT 59.705 57.895 0.00 0.00 39.71 4.00
23 24 2.396157 GCCCGTCATCGAAACCCAC 61.396 63.158 0.00 0.00 39.71 4.61
24 25 2.046700 GCCCGTCATCGAAACCCA 60.047 61.111 0.00 0.00 39.71 4.51
25 26 3.192922 CGCCCGTCATCGAAACCC 61.193 66.667 0.00 0.00 39.71 4.11
26 27 2.125832 TCGCCCGTCATCGAAACC 60.126 61.111 0.00 0.00 39.71 3.27
27 28 2.799540 GCTCGCCCGTCATCGAAAC 61.800 63.158 0.00 0.00 39.71 2.78
28 29 2.508439 GCTCGCCCGTCATCGAAA 60.508 61.111 0.00 0.00 39.71 3.46
29 30 3.754530 TGCTCGCCCGTCATCGAA 61.755 61.111 0.00 0.00 39.71 3.71
30 31 4.492160 GTGCTCGCCCGTCATCGA 62.492 66.667 0.00 0.00 39.71 3.59
31 32 4.794439 TGTGCTCGCCCGTCATCG 62.794 66.667 0.00 0.00 0.00 3.84
32 33 2.887568 CTGTGCTCGCCCGTCATC 60.888 66.667 0.00 0.00 0.00 2.92
33 34 3.695606 ACTGTGCTCGCCCGTCAT 61.696 61.111 0.00 0.00 0.00 3.06
34 35 4.662961 CACTGTGCTCGCCCGTCA 62.663 66.667 0.00 0.00 0.00 4.35
38 39 4.643387 AACCCACTGTGCTCGCCC 62.643 66.667 1.29 0.00 0.00 6.13
39 40 2.130073 GAAAACCCACTGTGCTCGCC 62.130 60.000 1.29 0.00 0.00 5.54
40 41 1.166531 AGAAAACCCACTGTGCTCGC 61.167 55.000 1.29 0.00 0.00 5.03
41 42 0.588252 CAGAAAACCCACTGTGCTCG 59.412 55.000 1.29 0.00 0.00 5.03
42 43 0.954452 CCAGAAAACCCACTGTGCTC 59.046 55.000 1.29 0.00 32.93 4.26
43 44 1.109323 GCCAGAAAACCCACTGTGCT 61.109 55.000 1.29 0.00 32.93 4.40
44 45 1.363807 GCCAGAAAACCCACTGTGC 59.636 57.895 1.29 0.00 32.93 4.57
45 46 1.654220 CGCCAGAAAACCCACTGTG 59.346 57.895 0.00 0.00 32.93 3.66
46 47 1.528309 CCGCCAGAAAACCCACTGT 60.528 57.895 0.00 0.00 32.93 3.55
47 48 1.528309 ACCGCCAGAAAACCCACTG 60.528 57.895 0.00 0.00 0.00 3.66
48 49 1.528309 CACCGCCAGAAAACCCACT 60.528 57.895 0.00 0.00 0.00 4.00
49 50 3.039134 CACCGCCAGAAAACCCAC 58.961 61.111 0.00 0.00 0.00 4.61
50 51 2.909965 GCACCGCCAGAAAACCCA 60.910 61.111 0.00 0.00 0.00 4.51
51 52 1.744320 AAAGCACCGCCAGAAAACCC 61.744 55.000 0.00 0.00 0.00 4.11
52 53 0.597377 CAAAGCACCGCCAGAAAACC 60.597 55.000 0.00 0.00 0.00 3.27
53 54 0.383949 TCAAAGCACCGCCAGAAAAC 59.616 50.000 0.00 0.00 0.00 2.43
54 55 1.107114 TTCAAAGCACCGCCAGAAAA 58.893 45.000 0.00 0.00 0.00 2.29
55 56 0.383949 GTTCAAAGCACCGCCAGAAA 59.616 50.000 0.00 0.00 0.00 2.52
56 57 0.465460 AGTTCAAAGCACCGCCAGAA 60.465 50.000 0.00 0.00 0.00 3.02
57 58 0.884704 GAGTTCAAAGCACCGCCAGA 60.885 55.000 0.00 0.00 0.00 3.86
58 59 1.165907 TGAGTTCAAAGCACCGCCAG 61.166 55.000 0.00 0.00 0.00 4.85
59 60 1.153066 TGAGTTCAAAGCACCGCCA 60.153 52.632 0.00 0.00 0.00 5.69
60 61 1.166531 AGTGAGTTCAAAGCACCGCC 61.167 55.000 0.00 0.00 33.14 6.13
61 62 0.040958 CAGTGAGTTCAAAGCACCGC 60.041 55.000 0.00 0.00 33.14 5.68
62 63 0.588252 CCAGTGAGTTCAAAGCACCG 59.412 55.000 0.00 0.00 33.14 4.94
63 64 0.312102 GCCAGTGAGTTCAAAGCACC 59.688 55.000 0.00 0.00 33.14 5.01
64 65 1.312815 AGCCAGTGAGTTCAAAGCAC 58.687 50.000 0.00 0.00 0.00 4.40
65 66 2.494059 GTAGCCAGTGAGTTCAAAGCA 58.506 47.619 0.00 0.00 0.00 3.91
66 67 1.807142 GGTAGCCAGTGAGTTCAAAGC 59.193 52.381 0.00 0.00 0.00 3.51
67 68 2.427506 GGGTAGCCAGTGAGTTCAAAG 58.572 52.381 5.96 0.00 0.00 2.77
68 69 1.073284 GGGGTAGCCAGTGAGTTCAAA 59.927 52.381 14.06 0.00 0.00 2.69
69 70 0.690762 GGGGTAGCCAGTGAGTTCAA 59.309 55.000 14.06 0.00 0.00 2.69
70 71 0.178903 AGGGGTAGCCAGTGAGTTCA 60.179 55.000 14.06 0.00 0.00 3.18
71 72 0.537653 GAGGGGTAGCCAGTGAGTTC 59.462 60.000 14.06 0.00 0.00 3.01
72 73 0.117340 AGAGGGGTAGCCAGTGAGTT 59.883 55.000 14.06 0.00 0.00 3.01
73 74 0.117340 AAGAGGGGTAGCCAGTGAGT 59.883 55.000 14.06 0.00 0.00 3.41
74 75 1.280457 AAAGAGGGGTAGCCAGTGAG 58.720 55.000 14.06 0.00 0.00 3.51
75 76 1.628846 GAAAAGAGGGGTAGCCAGTGA 59.371 52.381 14.06 0.00 0.00 3.41
76 77 1.630878 AGAAAAGAGGGGTAGCCAGTG 59.369 52.381 14.06 0.00 0.00 3.66
77 78 2.046280 AGAAAAGAGGGGTAGCCAGT 57.954 50.000 14.06 0.00 0.00 4.00
78 79 3.009584 AGAAAGAAAAGAGGGGTAGCCAG 59.990 47.826 14.06 0.00 0.00 4.85
79 80 2.986728 AGAAAGAAAAGAGGGGTAGCCA 59.013 45.455 14.06 0.00 0.00 4.75
80 81 3.722908 AGAAAGAAAAGAGGGGTAGCC 57.277 47.619 1.07 1.07 0.00 3.93
81 82 3.685272 CGAAGAAAGAAAAGAGGGGTAGC 59.315 47.826 0.00 0.00 0.00 3.58
82 83 4.691216 CACGAAGAAAGAAAAGAGGGGTAG 59.309 45.833 0.00 0.00 0.00 3.18
83 84 4.504340 CCACGAAGAAAGAAAAGAGGGGTA 60.504 45.833 0.00 0.00 0.00 3.69
84 85 3.477530 CACGAAGAAAGAAAAGAGGGGT 58.522 45.455 0.00 0.00 0.00 4.95
85 86 2.814336 CCACGAAGAAAGAAAAGAGGGG 59.186 50.000 0.00 0.00 0.00 4.79
86 87 3.477530 ACCACGAAGAAAGAAAAGAGGG 58.522 45.455 0.00 0.00 0.00 4.30
87 88 4.335594 ACAACCACGAAGAAAGAAAAGAGG 59.664 41.667 0.00 0.00 0.00 3.69
88 89 5.485662 ACAACCACGAAGAAAGAAAAGAG 57.514 39.130 0.00 0.00 0.00 2.85
89 90 6.990349 AGATACAACCACGAAGAAAGAAAAGA 59.010 34.615 0.00 0.00 0.00 2.52
90 91 7.072030 CAGATACAACCACGAAGAAAGAAAAG 58.928 38.462 0.00 0.00 0.00 2.27
91 92 6.017440 CCAGATACAACCACGAAGAAAGAAAA 60.017 38.462 0.00 0.00 0.00 2.29
92 93 5.468746 CCAGATACAACCACGAAGAAAGAAA 59.531 40.000 0.00 0.00 0.00 2.52
93 94 4.994852 CCAGATACAACCACGAAGAAAGAA 59.005 41.667 0.00 0.00 0.00 2.52
94 95 4.039973 ACCAGATACAACCACGAAGAAAGA 59.960 41.667 0.00 0.00 0.00 2.52
95 96 4.315803 ACCAGATACAACCACGAAGAAAG 58.684 43.478 0.00 0.00 0.00 2.62
96 97 4.345859 ACCAGATACAACCACGAAGAAA 57.654 40.909 0.00 0.00 0.00 2.52
97 98 4.525487 AGTACCAGATACAACCACGAAGAA 59.475 41.667 0.00 0.00 36.09 2.52
98 99 4.082408 CAGTACCAGATACAACCACGAAGA 60.082 45.833 0.00 0.00 36.09 2.87
99 100 4.174009 CAGTACCAGATACAACCACGAAG 58.826 47.826 0.00 0.00 36.09 3.79
100 101 3.056393 CCAGTACCAGATACAACCACGAA 60.056 47.826 0.00 0.00 36.09 3.85
101 102 2.494471 CCAGTACCAGATACAACCACGA 59.506 50.000 0.00 0.00 36.09 4.35
102 103 2.888594 CCAGTACCAGATACAACCACG 58.111 52.381 0.00 0.00 36.09 4.94
103 104 2.629051 GCCAGTACCAGATACAACCAC 58.371 52.381 0.00 0.00 36.09 4.16
104 105 1.206132 CGCCAGTACCAGATACAACCA 59.794 52.381 0.00 0.00 36.09 3.67
105 106 1.472728 CCGCCAGTACCAGATACAACC 60.473 57.143 0.00 0.00 36.09 3.77
106 107 1.472728 CCCGCCAGTACCAGATACAAC 60.473 57.143 0.00 0.00 36.09 3.32
107 108 0.828022 CCCGCCAGTACCAGATACAA 59.172 55.000 0.00 0.00 36.09 2.41
108 109 1.682451 GCCCGCCAGTACCAGATACA 61.682 60.000 0.00 0.00 36.09 2.29
109 110 1.069258 GCCCGCCAGTACCAGATAC 59.931 63.158 0.00 0.00 0.00 2.24
110 111 2.495409 CGCCCGCCAGTACCAGATA 61.495 63.158 0.00 0.00 0.00 1.98
111 112 3.849951 CGCCCGCCAGTACCAGAT 61.850 66.667 0.00 0.00 0.00 2.90
113 114 4.514577 CTCGCCCGCCAGTACCAG 62.515 72.222 0.00 0.00 0.00 4.00
123 124 2.369257 ATATCCACTGTGCTCGCCCG 62.369 60.000 1.29 0.00 0.00 6.13
124 125 0.601311 GATATCCACTGTGCTCGCCC 60.601 60.000 1.29 0.00 0.00 6.13
125 126 0.941463 CGATATCCACTGTGCTCGCC 60.941 60.000 1.29 0.00 0.00 5.54
126 127 0.030773 TCGATATCCACTGTGCTCGC 59.969 55.000 1.29 0.00 0.00 5.03
127 128 2.713895 ATCGATATCCACTGTGCTCG 57.286 50.000 1.29 7.91 0.00 5.03
128 129 4.021894 ACCTAATCGATATCCACTGTGCTC 60.022 45.833 0.00 0.00 0.00 4.26
129 130 3.898123 ACCTAATCGATATCCACTGTGCT 59.102 43.478 0.00 0.00 0.00 4.40
130 131 4.258702 ACCTAATCGATATCCACTGTGC 57.741 45.455 0.00 0.00 0.00 4.57
610 611 1.831652 CTATGGAGGGATGGACGGCC 61.832 65.000 0.00 0.00 0.00 6.13
611 612 1.674057 CTATGGAGGGATGGACGGC 59.326 63.158 0.00 0.00 0.00 5.68
612 613 1.674057 GCTATGGAGGGATGGACGG 59.326 63.158 0.00 0.00 0.00 4.79
613 614 1.674057 GGCTATGGAGGGATGGACG 59.326 63.158 0.00 0.00 0.00 4.79
615 616 1.536418 CCGGCTATGGAGGGATGGA 60.536 63.158 0.00 0.00 0.00 3.41
626 627 2.076622 CTGTAGTGCGCTCCGGCTAT 62.077 60.000 9.73 0.00 36.09 2.97
632 633 1.362406 GAAAGCCTGTAGTGCGCTCC 61.362 60.000 9.73 0.00 30.92 4.70
657 661 2.820178 ACCTGCCTTCCATTTTTAGGG 58.180 47.619 0.00 0.00 0.00 3.53
658 662 4.402474 CCTTACCTGCCTTCCATTTTTAGG 59.598 45.833 0.00 0.00 0.00 2.69
677 681 0.109272 CTGTGCTCTTCGTCGCCTTA 60.109 55.000 0.00 0.00 0.00 2.69
678 682 1.373497 CTGTGCTCTTCGTCGCCTT 60.373 57.895 0.00 0.00 0.00 4.35
685 689 0.601046 TGAACAGGCTGTGCTCTTCG 60.601 55.000 25.54 0.00 0.00 3.79
695 699 3.256631 GGTGATGAATTGTTGAACAGGCT 59.743 43.478 0.00 0.00 0.00 4.58
700 704 4.213270 TCGACTGGTGATGAATTGTTGAAC 59.787 41.667 0.00 0.00 0.00 3.18
701 705 4.384940 TCGACTGGTGATGAATTGTTGAA 58.615 39.130 0.00 0.00 0.00 2.69
705 709 2.303022 ACCTCGACTGGTGATGAATTGT 59.697 45.455 0.00 0.00 39.17 2.71
734 739 1.238439 CAAAACTGATGGACGGCAGT 58.762 50.000 0.00 0.00 46.59 4.40
780 792 2.884639 CAAGGACAAAACCGATTCTGGT 59.115 45.455 0.00 0.00 46.67 4.00
782 794 2.351738 GCCAAGGACAAAACCGATTCTG 60.352 50.000 0.00 0.00 34.73 3.02
790 803 0.030235 GACCACGCCAAGGACAAAAC 59.970 55.000 0.00 0.00 0.00 2.43
794 807 4.308458 CGGACCACGCCAAGGACA 62.308 66.667 0.00 0.00 34.82 4.02
890 911 0.247460 GCCCAAACAGAATGGCTTCC 59.753 55.000 0.00 0.00 43.62 3.46
896 917 2.159338 CCGATTCAGCCCAAACAGAATG 60.159 50.000 0.00 0.00 46.00 2.67
924 945 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
925 946 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
926 947 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
927 948 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
928 949 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
929 950 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
930 951 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
931 952 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
932 953 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
933 954 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
934 955 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
935 956 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
936 957 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
937 958 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
938 959 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
939 960 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
940 961 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
941 962 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
942 963 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
943 964 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
944 965 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
945 966 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
946 967 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
947 968 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
948 969 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
949 970 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
950 971 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
951 972 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
952 973 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
953 974 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
954 975 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
955 976 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
956 977 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
957 978 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
958 979 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
959 980 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
960 981 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
961 982 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
962 983 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
963 984 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
964 985 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
965 986 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
966 987 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
967 988 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
968 989 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
1130 1151 4.272489 CCAGGGATTGTGAAGAGCATAAA 58.728 43.478 0.00 0.00 31.11 1.40
1219 1246 4.873129 CGGATCGACGGCACCTGG 62.873 72.222 0.00 0.00 0.00 4.45
1275 1308 5.556355 TCTGAATCAAATGCTGACATGTC 57.444 39.130 19.27 19.27 36.69 3.06
1308 1352 1.539388 TCGCGCATTCATCAAAAGGTT 59.461 42.857 8.75 0.00 0.00 3.50
1315 1359 2.477694 GGTGAATTTCGCGCATTCATCA 60.478 45.455 26.54 11.43 41.55 3.07
1339 1383 5.419788 AGCTCCATCTGCATGAACAAATTAA 59.580 36.000 0.00 0.00 30.57 1.40
1340 1384 4.951715 AGCTCCATCTGCATGAACAAATTA 59.048 37.500 0.00 0.00 30.57 1.40
1341 1385 3.767673 AGCTCCATCTGCATGAACAAATT 59.232 39.130 0.00 0.00 30.57 1.82
1342 1386 3.362706 AGCTCCATCTGCATGAACAAAT 58.637 40.909 0.00 0.00 30.57 2.32
1367 1415 1.079405 CGGGCTCCTTACTTTCGCA 60.079 57.895 0.00 0.00 0.00 5.10
1370 1418 3.538634 ATGTACGGGCTCCTTACTTTC 57.461 47.619 8.60 0.00 30.81 2.62
1385 1433 6.868622 AGAATCTCTGTACTCCACAATGTAC 58.131 40.000 0.00 0.00 36.48 2.90
1402 1450 2.573915 ACCTTCTCCACCCAAGAATCTC 59.426 50.000 0.00 0.00 32.56 2.75
1540 1591 9.605955 CGGTTGAAACATTTTTCTTTTTCTTTT 57.394 25.926 5.95 0.00 41.64 2.27
1544 1595 7.902917 CCTTCGGTTGAAACATTTTTCTTTTTC 59.097 33.333 5.95 0.00 41.64 2.29
1608 1663 1.180029 GCAGCCCTGATGACAACAAT 58.820 50.000 0.00 0.00 0.00 2.71
1624 1679 1.643880 TCACGATGCACACATAGCAG 58.356 50.000 0.00 0.00 46.36 4.24
1677 1732 6.759272 TCAGAGCTTACTTCACAAGTTACAT 58.241 36.000 0.00 0.00 42.81 2.29
1716 1771 4.214119 CAGAGAACCACAATTTCGTCACAT 59.786 41.667 0.00 0.00 0.00 3.21
1798 1853 0.970937 TAGTTGAGCACCTCCTCCGG 60.971 60.000 0.00 0.00 0.00 5.14
1834 1895 5.064452 CAGAATTTGCAGCTAGGTACTGAAG 59.936 44.000 0.00 0.00 41.52 3.02
1843 1904 6.915544 TCAGTAATCAGAATTTGCAGCTAG 57.084 37.500 0.00 0.00 0.00 3.42
1857 1918 4.360951 ACGGGGAAAAGTTCAGTAATCA 57.639 40.909 0.00 0.00 0.00 2.57
2158 2224 4.745125 ACATATCGCCGTCAGTTATTTCAG 59.255 41.667 0.00 0.00 0.00 3.02
2388 2464 4.153117 CCGTATGGAATATCAGCAAGAAGC 59.847 45.833 0.00 0.00 40.24 3.86
2400 2476 2.367567 GGACTTGGAGCCGTATGGAATA 59.632 50.000 4.73 0.00 37.49 1.75
2483 2564 2.134789 AGCCAAGAGGAAAATGCGAT 57.865 45.000 0.00 0.00 36.89 4.58
2491 2572 3.244875 TGCAGATGTTTAGCCAAGAGGAA 60.245 43.478 0.00 0.00 36.89 3.36
2493 2574 2.681848 CTGCAGATGTTTAGCCAAGAGG 59.318 50.000 8.42 0.00 38.23 3.69
2514 2595 1.390565 AGATGCAGCATCCTGAAAGC 58.609 50.000 28.57 5.12 41.36 3.51
2515 2596 4.386711 TCATAGATGCAGCATCCTGAAAG 58.613 43.478 28.57 14.51 41.36 2.62
2635 2732 7.707624 AACATCATGTCACAATTTACAGGAT 57.292 32.000 0.00 6.65 45.18 3.24
2638 2735 7.326789 GGTGAAACATCATGTCACAATTTACAG 59.673 37.037 13.51 0.00 42.81 2.74
2644 2741 5.072055 TCTGGTGAAACATCATGTCACAAT 58.928 37.500 13.51 0.00 42.81 2.71
2786 2891 4.514545 TCGTAAGATTAATGCGTTGCAG 57.485 40.909 0.08 0.00 42.16 4.41
2800 2905 7.489435 CATGAATAGCTCAAGAACTTCGTAAGA 59.511 37.037 0.00 0.00 41.08 2.10
2842 2954 5.060446 GCACGGCAGAAAATAAACATGTTAC 59.940 40.000 12.39 0.25 0.00 2.50
2863 2975 1.147153 GATGAGGCCCCTACTGCAC 59.853 63.158 0.00 0.00 0.00 4.57
2905 3019 4.081420 ACTCATACACTTGGTCTGTGATCC 60.081 45.833 0.00 0.00 38.65 3.36
2951 3065 9.296400 GTGCAGAAACTATTCAGTAAAACAAAA 57.704 29.630 0.00 0.00 38.06 2.44
2955 3069 7.861630 TGAGTGCAGAAACTATTCAGTAAAAC 58.138 34.615 0.00 0.00 38.06 2.43
2956 3070 8.621532 ATGAGTGCAGAAACTATTCAGTAAAA 57.378 30.769 0.00 0.00 38.06 1.52
2960 3074 6.569226 GCAAATGAGTGCAGAAACTATTCAGT 60.569 38.462 0.00 0.00 44.29 3.41
2961 3075 5.798934 GCAAATGAGTGCAGAAACTATTCAG 59.201 40.000 0.00 0.00 44.29 3.02
2962 3076 5.702865 GCAAATGAGTGCAGAAACTATTCA 58.297 37.500 0.00 0.00 44.29 2.57
3003 3131 3.508762 CAGCCTGAAAATCACAATCAGC 58.491 45.455 0.00 0.00 39.36 4.26
3105 7098 6.607600 TCATGTCTGTTAGGAAGTATAGCTGT 59.392 38.462 0.00 0.00 0.00 4.40
3166 8489 6.071391 ACTCTTAACATATTGGGGTTTGCAAG 60.071 38.462 0.00 0.00 0.00 4.01
3205 8528 4.576053 TGTCAAGTTCCACAATTCTCTGTG 59.424 41.667 0.00 0.00 45.24 3.66
3212 8535 3.387374 TGGCATTGTCAAGTTCCACAATT 59.613 39.130 6.89 0.00 40.52 2.32
3332 8655 3.473367 CATCGCTTCTTTGACAACTTCG 58.527 45.455 0.00 0.00 0.00 3.79
3376 8699 0.179108 GGTACGTGCTGGTGATCCTC 60.179 60.000 3.01 0.00 34.23 3.71
3386 8709 2.348888 CCTTCGAGGGGTACGTGCT 61.349 63.158 5.48 0.00 0.00 4.40
3398 8721 0.747283 GAGTAGAGGACGCCCTTCGA 60.747 60.000 0.00 0.00 44.53 3.71
3413 8736 2.687297 TCTAGCCGTCTCCTAGGAGTA 58.313 52.381 33.14 19.74 42.49 2.59
3540 9099 2.717580 AATGCTTCACACATGCACTG 57.282 45.000 0.00 0.00 37.96 3.66
3637 9196 2.275715 ATCCTGATGGGGGAGGCTGA 62.276 60.000 0.00 0.00 36.21 4.26
3653 9215 4.478206 TTGTCTGATCCACTGAAGATCC 57.522 45.455 8.47 0.00 39.56 3.36
3655 9217 6.550938 TGTATTGTCTGATCCACTGAAGAT 57.449 37.500 0.00 0.00 0.00 2.40
3667 9241 3.845178 CCGTGTAGCTTGTATTGTCTGA 58.155 45.455 0.00 0.00 0.00 3.27
3743 9317 6.015940 GGAGACTTCAATTTGGTGAGAATGTT 60.016 38.462 0.00 0.00 0.00 2.71
3756 9330 6.302269 ACTGAAACATCAGGAGACTTCAATT 58.698 36.000 10.32 0.00 41.76 2.32
3860 9434 2.773661 TGTCAGTGATAGATGGTGGCAT 59.226 45.455 0.00 0.00 0.00 4.40
3886 9464 5.391312 AAGTGCATTTGTCCTTGGTAATC 57.609 39.130 0.00 0.00 0.00 1.75
3889 9471 3.572255 GGAAAGTGCATTTGTCCTTGGTA 59.428 43.478 12.65 0.00 0.00 3.25
3927 9509 2.844451 TTGGTGTGGCTTTCGCTGC 61.844 57.895 0.00 0.00 36.09 5.25
4103 9689 1.134159 CAAGATCCCCAGCTCCTGAAG 60.134 57.143 0.00 0.00 32.44 3.02
4220 9809 9.719355 AATTATTGTGGGTTTATGTTTTCCTTC 57.281 29.630 0.00 0.00 0.00 3.46
4387 10068 9.431887 GTATTGAAGTACATCCAAGAACTGTTA 57.568 33.333 0.00 0.00 0.00 2.41
4416 10097 5.803967 GCCAGCAAAATCTTCAGATAACTTG 59.196 40.000 0.00 0.00 33.73 3.16
4439 10126 6.414987 GCCGAATTACAACTTTATTCAGATGC 59.585 38.462 0.00 0.00 0.00 3.91
4440 10127 7.641411 CAGCCGAATTACAACTTTATTCAGATG 59.359 37.037 0.00 0.00 0.00 2.90
4487 10174 7.764443 GCCTACACTGAAACAGTCTTATCAATA 59.236 37.037 1.22 0.00 43.43 1.90
4521 10209 8.797350 ATACATGTGAATGTGATCTTTCAAGA 57.203 30.769 9.11 0.00 38.70 3.02
4532 10220 4.612033 CGGCTGCATATACATGTGAATGTG 60.612 45.833 9.11 4.81 36.08 3.21
4533 10221 3.499537 CGGCTGCATATACATGTGAATGT 59.500 43.478 9.11 0.00 38.49 2.71
4534 10222 3.747529 TCGGCTGCATATACATGTGAATG 59.252 43.478 9.11 12.63 34.40 2.67
4535 10223 3.748048 GTCGGCTGCATATACATGTGAAT 59.252 43.478 9.11 0.00 34.40 2.57
4536 10224 3.130633 GTCGGCTGCATATACATGTGAA 58.869 45.455 9.11 0.00 34.40 3.18
4537 10225 2.102252 TGTCGGCTGCATATACATGTGA 59.898 45.455 9.11 0.00 34.40 3.58
4544 10232 3.384789 AGAAGAAGTGTCGGCTGCATATA 59.615 43.478 0.50 0.00 0.00 0.86
4586 10276 3.922910 AGTCGTACCTGTTAAAAGCTCC 58.077 45.455 0.00 0.00 0.00 4.70
4646 10337 6.515832 TCATTACCTGACATGCTACATACTG 58.484 40.000 0.00 0.00 0.00 2.74
4661 10352 6.057533 TCACCAGATGCTTATTCATTACCTG 58.942 40.000 0.00 0.00 0.00 4.00
4677 10368 3.093057 TCAGACTACAGCTCACCAGAT 57.907 47.619 0.00 0.00 0.00 2.90
4679 10370 3.883830 ATTCAGACTACAGCTCACCAG 57.116 47.619 0.00 0.00 0.00 4.00
4692 10383 9.096160 CCTGCATGTATATCAGATAATTCAGAC 57.904 37.037 0.00 0.00 0.00 3.51
4747 10438 1.010350 GCGCGCCAATCATCTTCTG 60.010 57.895 23.24 0.00 0.00 3.02
4764 10455 8.025445 ACAAGTCAATGACATTAATCTTCTTGC 58.975 33.333 16.38 0.00 34.60 4.01
4862 11377 2.325583 TCGTTGGCTCTCACAGTTTT 57.674 45.000 0.00 0.00 0.00 2.43
4914 11430 4.516698 GCTATCTGTGTACAATGGGGAATG 59.483 45.833 0.00 0.00 0.00 2.67
4918 11434 3.845781 AGCTATCTGTGTACAATGGGG 57.154 47.619 0.00 0.00 0.00 4.96
4925 11442 8.703604 TTTCAGTGAATAAGCTATCTGTGTAC 57.296 34.615 6.36 0.00 0.00 2.90
4985 11506 7.382218 CAGTGTCAAAACAAAGTGAGTCTTTTT 59.618 33.333 0.00 0.00 42.95 1.94
4990 11511 5.324697 GTCAGTGTCAAAACAAAGTGAGTC 58.675 41.667 0.00 0.00 37.08 3.36
5020 11541 4.080469 ACTTCAGTGATCATTGCTGGATCT 60.080 41.667 13.08 0.00 41.35 2.75
5061 11582 0.610232 AGGAGTTGTTGAGCATGGGC 60.610 55.000 0.00 0.00 41.61 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.