Multiple sequence alignment - TraesCS6A01G063000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G063000 chr6A 100.000 4684 0 0 1 4684 33582213 33586896 0.000000e+00 8650
1 TraesCS6A01G063000 chr6A 90.496 1452 99 24 2255 3697 33541363 33539942 0.000000e+00 1881
2 TraesCS6A01G063000 chr6A 91.518 448 29 5 996 1436 33542772 33542327 4.010000e-170 608
3 TraesCS6A01G063000 chr6A 92.527 281 20 1 1983 2262 33541713 33541433 7.300000e-108 401
4 TraesCS6A01G063000 chr6A 82.598 408 51 16 1533 1929 33542328 33541930 4.490000e-90 342
5 TraesCS6A01G063000 chr6B 90.339 3188 183 53 611 3726 61222999 61226133 0.000000e+00 4065
6 TraesCS6A01G063000 chr6B 92.720 1305 80 9 2392 3686 60862335 60861036 0.000000e+00 1869
7 TraesCS6A01G063000 chr6B 85.677 775 62 29 1533 2262 60864133 60863363 0.000000e+00 771
8 TraesCS6A01G063000 chr6B 85.687 531 44 20 919 1436 60864643 60864132 8.920000e-147 531
9 TraesCS6A01G063000 chr6B 93.617 329 12 3 219 546 61222531 61222851 2.530000e-132 483
10 TraesCS6A01G063000 chr6B 95.506 89 4 0 2255 2343 60863276 60863188 4.890000e-30 143
11 TraesCS6A01G063000 chr6B 94.624 93 4 1 4014 4106 61226299 61226390 4.890000e-30 143
12 TraesCS6A01G063000 chr6B 96.774 62 2 0 3724 3785 61226162 61226223 2.310000e-18 104
13 TraesCS6A01G063000 chr6D 91.444 1461 93 17 2255 3686 28999975 29001432 0.000000e+00 1977
14 TraesCS6A01G063000 chr6D 94.500 1200 55 5 2528 3726 28941154 28939965 0.000000e+00 1840
15 TraesCS6A01G063000 chr6D 84.032 1384 135 58 921 2262 28998570 28999909 0.000000e+00 1253
16 TraesCS6A01G063000 chr6D 93.158 380 15 8 1154 1523 28942840 28942462 8.860000e-152 547
17 TraesCS6A01G063000 chr6D 88.132 455 41 10 1493 1937 28942446 28941995 3.210000e-146 529
18 TraesCS6A01G063000 chr6D 86.481 503 37 16 117 615 28944069 28943594 1.490000e-144 523
19 TraesCS6A01G063000 chr6D 94.921 315 13 2 1948 2261 28941885 28941573 1.510000e-134 490
20 TraesCS6A01G063000 chr6D 84.342 281 10 11 2255 2530 28941500 28941249 1.300000e-60 244
21 TraesCS6A01G063000 chr6D 87.805 205 7 8 927 1131 28943299 28943113 1.700000e-54 224
22 TraesCS6A01G063000 chr6D 85.870 184 11 6 3833 4007 436407751 436407574 1.040000e-41 182
23 TraesCS6A01G063000 chr6D 84.247 146 11 5 690 823 28943446 28943301 1.060000e-26 132
24 TraesCS6A01G063000 chr6D 98.246 57 1 0 4014 4070 28939801 28939745 2.980000e-17 100
25 TraesCS6A01G063000 chr3D 87.753 1184 117 20 2528 3687 574918521 574919700 0.000000e+00 1358
26 TraesCS6A01G063000 chr3D 81.352 1346 178 51 1009 2315 574916922 574918233 0.000000e+00 1027
27 TraesCS6A01G063000 chr3D 84.574 188 16 6 3831 4009 533955696 533955513 1.730000e-39 174
28 TraesCS6A01G063000 chr3B 86.776 1225 128 24 2528 3721 765003173 765001952 0.000000e+00 1334
29 TraesCS6A01G063000 chr3B 94.435 575 31 1 4111 4684 552644002 552643428 0.000000e+00 883
30 TraesCS6A01G063000 chr3B 83.833 600 78 18 1205 1795 765004886 765004297 1.900000e-153 553
31 TraesCS6A01G063000 chr3B 90.237 338 33 0 1978 2315 765003837 765003500 4.300000e-120 442
32 TraesCS6A01G063000 chr3A 89.609 895 86 6 2528 3420 710700175 710699286 0.000000e+00 1131
33 TraesCS6A01G063000 chr3A 81.319 728 102 22 1205 1924 710701655 710700954 1.140000e-155 560
34 TraesCS6A01G063000 chr3A 90.774 336 31 0 1980 2315 710700819 710700484 2.570000e-122 449
35 TraesCS6A01G063000 chr7A 96.167 574 21 1 4111 4684 605173710 605173138 0.000000e+00 937
36 TraesCS6A01G063000 chr7A 85.165 182 15 7 3835 4008 488304613 488304436 4.820000e-40 176
37 TraesCS6A01G063000 chr7B 95.296 574 26 1 4111 4684 625042109 625041537 0.000000e+00 909
38 TraesCS6A01G063000 chr7B 94.774 574 28 2 4111 4684 43255383 43255954 0.000000e+00 893
39 TraesCS6A01G063000 chr5B 95.296 574 26 1 4111 4684 278792812 278793384 0.000000e+00 909
40 TraesCS6A01G063000 chr5A 94.948 574 28 1 4111 4684 487671397 487671969 0.000000e+00 898
41 TraesCS6A01G063000 chr2D 94.948 574 28 1 4111 4684 20081002 20081574 0.000000e+00 898
42 TraesCS6A01G063000 chr2D 94.774 574 29 1 4111 4684 90910003 90910575 0.000000e+00 893
43 TraesCS6A01G063000 chr2D 77.199 307 68 2 2005 2310 325362201 325361896 1.340000e-40 178
44 TraesCS6A01G063000 chr2D 84.656 189 12 9 3835 4011 540163768 540163585 6.230000e-39 172
45 TraesCS6A01G063000 chr2D 83.333 198 20 7 3828 4016 537187727 537187920 2.240000e-38 171
46 TraesCS6A01G063000 chr1B 94.599 574 29 2 4111 4684 476755475 476756046 0.000000e+00 887
47 TraesCS6A01G063000 chr1B 85.165 182 15 8 3836 4009 364248328 364248505 4.820000e-40 176
48 TraesCS6A01G063000 chr4A 75.459 599 133 13 2811 3402 683486114 683485523 3.570000e-71 279
49 TraesCS6A01G063000 chr5D 85.000 180 13 4 3835 4004 550513216 550513391 2.240000e-38 171
50 TraesCS6A01G063000 chr4D 83.000 200 18 9 3827 4016 35722297 35722490 2.900000e-37 167
51 TraesCS6A01G063000 chr1D 84.181 177 23 2 3830 4006 183768760 183768589 2.900000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G063000 chr6A 33582213 33586896 4683 False 8650.000000 8650 100.000000 1 4684 1 chr6A.!!$F1 4683
1 TraesCS6A01G063000 chr6A 33539942 33542772 2830 True 808.000000 1881 89.284750 996 3697 4 chr6A.!!$R1 2701
2 TraesCS6A01G063000 chr6B 61222531 61226390 3859 False 1198.750000 4065 93.838500 219 4106 4 chr6B.!!$F1 3887
3 TraesCS6A01G063000 chr6B 60861036 60864643 3607 True 828.500000 1869 89.897500 919 3686 4 chr6B.!!$R1 2767
4 TraesCS6A01G063000 chr6D 28998570 29001432 2862 False 1615.000000 1977 87.738000 921 3686 2 chr6D.!!$F1 2765
5 TraesCS6A01G063000 chr6D 28939745 28944069 4324 True 514.333333 1840 90.203556 117 4070 9 chr6D.!!$R2 3953
6 TraesCS6A01G063000 chr3D 574916922 574919700 2778 False 1192.500000 1358 84.552500 1009 3687 2 chr3D.!!$F1 2678
7 TraesCS6A01G063000 chr3B 552643428 552644002 574 True 883.000000 883 94.435000 4111 4684 1 chr3B.!!$R1 573
8 TraesCS6A01G063000 chr3B 765001952 765004886 2934 True 776.333333 1334 86.948667 1205 3721 3 chr3B.!!$R2 2516
9 TraesCS6A01G063000 chr3A 710699286 710701655 2369 True 713.333333 1131 87.234000 1205 3420 3 chr3A.!!$R1 2215
10 TraesCS6A01G063000 chr7A 605173138 605173710 572 True 937.000000 937 96.167000 4111 4684 1 chr7A.!!$R2 573
11 TraesCS6A01G063000 chr7B 625041537 625042109 572 True 909.000000 909 95.296000 4111 4684 1 chr7B.!!$R1 573
12 TraesCS6A01G063000 chr7B 43255383 43255954 571 False 893.000000 893 94.774000 4111 4684 1 chr7B.!!$F1 573
13 TraesCS6A01G063000 chr5B 278792812 278793384 572 False 909.000000 909 95.296000 4111 4684 1 chr5B.!!$F1 573
14 TraesCS6A01G063000 chr5A 487671397 487671969 572 False 898.000000 898 94.948000 4111 4684 1 chr5A.!!$F1 573
15 TraesCS6A01G063000 chr2D 20081002 20081574 572 False 898.000000 898 94.948000 4111 4684 1 chr2D.!!$F1 573
16 TraesCS6A01G063000 chr2D 90910003 90910575 572 False 893.000000 893 94.774000 4111 4684 1 chr2D.!!$F2 573
17 TraesCS6A01G063000 chr1B 476755475 476756046 571 False 887.000000 887 94.599000 4111 4684 1 chr1B.!!$F2 573
18 TraesCS6A01G063000 chr4A 683485523 683486114 591 True 279.000000 279 75.459000 2811 3402 1 chr4A.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 610 0.179026 CATCTCCTCCGGACGGACTA 60.179 60.0 16.04 9.53 39.76 2.59 F
983 1113 0.387367 GCTGCTTGAAGACGAGACGA 60.387 55.0 0.00 0.00 0.00 4.20 F
1591 2204 0.401105 CCCAGACCAGGATGATCCCT 60.401 60.0 8.08 0.00 39.69 4.20 F
1787 2403 0.537188 ACCCGCAATCTCTGGTACTG 59.463 55.0 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 3318 0.179065 CTCCGATGCTGGCAATGAGA 60.179 55.000 0.00 0.00 0.00 3.27 R
2372 4564 1.622811 AGTTCAGTCCCTGCTCTGAAG 59.377 52.381 7.68 0.00 46.62 3.02 R
3458 5828 2.038007 TTCTCCTCCTCTGCGGCT 59.962 61.111 0.00 0.00 0.00 5.52 R
3744 6150 1.120530 GTGTACAGGATCATCCGGGT 58.879 55.000 8.86 8.84 42.75 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.347077 GGAGCCATGGAAGATATGGAG 57.653 52.381 18.40 0.00 46.42 3.86
21 22 2.617532 GGAGCCATGGAAGATATGGAGC 60.618 54.545 18.40 0.00 46.42 4.70
22 23 2.305343 GAGCCATGGAAGATATGGAGCT 59.695 50.000 18.40 0.00 46.42 4.09
23 24 3.517100 GAGCCATGGAAGATATGGAGCTA 59.483 47.826 18.40 0.00 46.42 3.32
24 25 4.110072 AGCCATGGAAGATATGGAGCTAT 58.890 43.478 18.40 0.00 46.42 2.97
25 26 5.283763 AGCCATGGAAGATATGGAGCTATA 58.716 41.667 18.40 0.00 46.42 1.31
26 27 5.728253 AGCCATGGAAGATATGGAGCTATAA 59.272 40.000 18.40 0.00 46.42 0.98
27 28 6.389278 AGCCATGGAAGATATGGAGCTATAAT 59.611 38.462 18.40 0.00 46.42 1.28
28 29 7.059156 GCCATGGAAGATATGGAGCTATAATT 58.941 38.462 18.40 0.00 46.42 1.40
29 30 8.213679 GCCATGGAAGATATGGAGCTATAATTA 58.786 37.037 18.40 0.00 46.42 1.40
40 41 7.328277 TGGAGCTATAATTAAAATTGCGTGT 57.672 32.000 0.00 0.00 0.00 4.49
41 42 7.767261 TGGAGCTATAATTAAAATTGCGTGTT 58.233 30.769 0.00 0.00 0.00 3.32
42 43 8.894731 TGGAGCTATAATTAAAATTGCGTGTTA 58.105 29.630 0.00 0.00 0.00 2.41
43 44 9.893305 GGAGCTATAATTAAAATTGCGTGTTAT 57.107 29.630 0.00 0.00 0.00 1.89
54 55 7.684062 AAATTGCGTGTTATCAATTAGATGC 57.316 32.000 0.00 0.00 40.73 3.91
55 56 4.811555 TGCGTGTTATCAATTAGATGCC 57.188 40.909 0.00 0.00 37.57 4.40
56 57 3.247411 TGCGTGTTATCAATTAGATGCCG 59.753 43.478 0.00 0.00 37.57 5.69
57 58 3.493129 GCGTGTTATCAATTAGATGCCGA 59.507 43.478 0.00 0.00 37.57 5.54
58 59 4.152402 GCGTGTTATCAATTAGATGCCGAT 59.848 41.667 0.00 0.00 37.57 4.18
59 60 5.347635 GCGTGTTATCAATTAGATGCCGATA 59.652 40.000 0.00 0.00 37.57 2.92
60 61 6.454318 GCGTGTTATCAATTAGATGCCGATAG 60.454 42.308 0.00 0.00 37.57 2.08
76 77 3.639538 CGATAGGTGATCCAAGTTACCG 58.360 50.000 0.00 0.00 38.24 4.02
77 78 2.973694 TAGGTGATCCAAGTTACCGC 57.026 50.000 0.00 0.00 38.24 5.68
78 79 0.981183 AGGTGATCCAAGTTACCGCA 59.019 50.000 0.00 0.00 38.24 5.69
79 80 1.559682 AGGTGATCCAAGTTACCGCAT 59.440 47.619 0.00 0.00 38.24 4.73
80 81 2.026262 AGGTGATCCAAGTTACCGCATT 60.026 45.455 0.00 0.00 38.24 3.56
81 82 2.354821 GGTGATCCAAGTTACCGCATTC 59.645 50.000 0.00 0.00 0.00 2.67
82 83 3.006940 GTGATCCAAGTTACCGCATTCA 58.993 45.455 0.00 0.00 0.00 2.57
83 84 3.006940 TGATCCAAGTTACCGCATTCAC 58.993 45.455 0.00 0.00 0.00 3.18
84 85 2.851263 TCCAAGTTACCGCATTCACT 57.149 45.000 0.00 0.00 0.00 3.41
85 86 3.134574 TCCAAGTTACCGCATTCACTT 57.865 42.857 0.00 0.00 0.00 3.16
86 87 2.811431 TCCAAGTTACCGCATTCACTTG 59.189 45.455 8.26 8.26 43.85 3.16
87 88 3.201726 CAAGTTACCGCATTCACTTGG 57.798 47.619 7.60 0.00 41.59 3.61
88 89 2.552315 CAAGTTACCGCATTCACTTGGT 59.448 45.455 7.60 0.00 41.59 3.67
89 90 2.423577 AGTTACCGCATTCACTTGGTC 58.576 47.619 0.00 0.00 35.93 4.02
90 91 2.147958 GTTACCGCATTCACTTGGTCA 58.852 47.619 0.00 0.00 35.93 4.02
91 92 2.093306 TACCGCATTCACTTGGTCAG 57.907 50.000 0.00 0.00 35.93 3.51
92 93 0.606401 ACCGCATTCACTTGGTCAGG 60.606 55.000 0.00 0.00 0.00 3.86
93 94 1.308069 CCGCATTCACTTGGTCAGGG 61.308 60.000 0.00 0.00 0.00 4.45
94 95 0.321564 CGCATTCACTTGGTCAGGGA 60.322 55.000 0.00 0.00 30.49 4.20
98 99 2.930826 TTCACTTGGTCAGGGAAGAC 57.069 50.000 0.00 0.00 40.29 3.01
99 100 1.801242 TCACTTGGTCAGGGAAGACA 58.199 50.000 0.00 0.00 40.29 3.41
100 101 2.338809 TCACTTGGTCAGGGAAGACAT 58.661 47.619 0.00 0.00 40.29 3.06
101 102 2.038952 TCACTTGGTCAGGGAAGACATG 59.961 50.000 0.00 0.00 40.29 3.21
102 103 2.057922 ACTTGGTCAGGGAAGACATGT 58.942 47.619 0.00 0.00 40.29 3.21
103 104 2.443255 ACTTGGTCAGGGAAGACATGTT 59.557 45.455 0.00 0.00 40.29 2.71
104 105 3.117512 ACTTGGTCAGGGAAGACATGTTT 60.118 43.478 0.00 0.00 40.29 2.83
105 106 2.862541 TGGTCAGGGAAGACATGTTTG 58.137 47.619 0.00 0.00 40.29 2.93
106 107 2.162681 GGTCAGGGAAGACATGTTTGG 58.837 52.381 0.00 0.00 40.29 3.28
107 108 2.489073 GGTCAGGGAAGACATGTTTGGT 60.489 50.000 0.00 0.00 40.29 3.67
108 109 3.222603 GTCAGGGAAGACATGTTTGGTT 58.777 45.455 0.00 0.00 38.40 3.67
109 110 3.004734 GTCAGGGAAGACATGTTTGGTTG 59.995 47.826 0.00 0.00 38.40 3.77
110 111 2.958355 CAGGGAAGACATGTTTGGTTGT 59.042 45.455 0.00 0.00 0.00 3.32
111 112 3.384467 CAGGGAAGACATGTTTGGTTGTT 59.616 43.478 0.00 0.00 0.00 2.83
112 113 4.582656 CAGGGAAGACATGTTTGGTTGTTA 59.417 41.667 0.00 0.00 0.00 2.41
113 114 4.583073 AGGGAAGACATGTTTGGTTGTTAC 59.417 41.667 0.00 0.00 0.00 2.50
114 115 4.339814 GGGAAGACATGTTTGGTTGTTACA 59.660 41.667 0.00 0.00 0.00 2.41
115 116 5.507315 GGGAAGACATGTTTGGTTGTTACAG 60.507 44.000 0.00 0.00 0.00 2.74
121 122 0.382515 TTTGGTTGTTACAGCCGCAC 59.617 50.000 13.30 0.00 37.56 5.34
135 136 1.663695 CCGCACGATCCCTTTTGTAT 58.336 50.000 0.00 0.00 0.00 2.29
136 137 2.014128 CCGCACGATCCCTTTTGTATT 58.986 47.619 0.00 0.00 0.00 1.89
137 138 2.031683 CCGCACGATCCCTTTTGTATTC 59.968 50.000 0.00 0.00 0.00 1.75
167 168 9.565090 TCCATCTGGAGTTTGATCAATATAAAG 57.435 33.333 9.40 5.43 39.78 1.85
175 176 8.579850 AGTTTGATCAATATAAAGCTTGGTGA 57.420 30.769 9.40 0.00 0.00 4.02
176 177 8.462016 AGTTTGATCAATATAAAGCTTGGTGAC 58.538 33.333 9.40 0.00 0.00 3.67
224 226 1.072505 TCCTGGCCGGAGAAAACAC 59.927 57.895 15.09 0.00 36.69 3.32
243 245 1.202098 ACAAAGAAACGAACGCCACAC 60.202 47.619 0.00 0.00 0.00 3.82
255 257 3.206246 CCACACGGCCAAACACGT 61.206 61.111 2.24 0.00 45.25 4.49
256 258 1.888172 CCACACGGCCAAACACGTA 60.888 57.895 2.24 0.00 42.04 3.57
257 259 1.277440 CACACGGCCAAACACGTAC 59.723 57.895 2.24 0.00 42.04 3.67
258 260 1.153409 ACACGGCCAAACACGTACA 60.153 52.632 2.24 0.00 42.04 2.90
384 386 0.616111 TCTCCTCCTCTCTGGCAACC 60.616 60.000 0.00 0.00 35.26 3.77
385 387 0.906756 CTCCTCCTCTCTGGCAACCA 60.907 60.000 0.00 0.00 35.26 3.67
386 388 0.473694 TCCTCCTCTCTGGCAACCAA 60.474 55.000 0.00 0.00 30.80 3.67
387 389 0.322008 CCTCCTCTCTGGCAACCAAC 60.322 60.000 0.00 0.00 30.80 3.77
408 410 5.838531 ACGTGTCCAAATCCTAACAAAAA 57.161 34.783 0.00 0.00 0.00 1.94
479 481 1.657751 GGCAGGGCAAAGGATTCGTC 61.658 60.000 0.00 0.00 0.00 4.20
546 548 4.421446 GTCGTCGTCGTCGCGTCT 62.421 66.667 5.77 0.00 37.64 4.18
549 551 4.738345 GTCGTCGTCGCGTCTGCT 62.738 66.667 5.77 0.00 39.65 4.24
550 552 4.736631 TCGTCGTCGCGTCTGCTG 62.737 66.667 5.77 0.00 39.65 4.41
563 591 4.830765 TGCTGCCGCCGGTATGAC 62.831 66.667 4.45 0.00 34.43 3.06
582 610 0.179026 CATCTCCTCCGGACGGACTA 60.179 60.000 16.04 9.53 39.76 2.59
605 637 2.418628 CGATCTCTCTATCCCTCTTCGC 59.581 54.545 0.00 0.00 0.00 4.70
615 647 1.063190 TCCCTCTTCGCCTCTTCCATA 60.063 52.381 0.00 0.00 0.00 2.74
642 741 3.522553 GTTCGTAGAGAATCACCCTTGG 58.477 50.000 0.00 0.00 41.49 3.61
648 747 3.973425 AGAGAATCACCCTTGGGAATTG 58.027 45.455 13.39 0.40 37.82 2.32
678 785 1.525619 GACTTTTGACGTCGACCCAAG 59.474 52.381 10.58 12.03 0.00 3.61
711 822 6.062434 AGGATTCGTTCATACTCTCGTAAG 57.938 41.667 0.00 0.00 0.00 2.34
743 854 7.426410 TGGATTCGTACAAGATCAGTCTAATC 58.574 38.462 0.00 4.19 33.30 1.75
744 855 7.285629 TGGATTCGTACAAGATCAGTCTAATCT 59.714 37.037 0.00 0.00 34.96 2.40
745 856 7.806014 GGATTCGTACAAGATCAGTCTAATCTC 59.194 40.741 0.00 0.00 32.29 2.75
747 858 8.959705 TTCGTACAAGATCAGTCTAATCTCTA 57.040 34.615 0.00 0.00 32.29 2.43
772 898 7.902387 ATGTACATATCATGCAAGATCAGTC 57.098 36.000 7.87 4.18 0.00 3.51
786 912 6.902417 GCAAGATCAGTCTAATTAAAGTTCGC 59.098 38.462 0.00 0.00 33.30 4.70
802 928 2.647529 TCGCTCATGCTCTCGTAAAA 57.352 45.000 0.00 0.00 36.97 1.52
807 933 4.549680 CGCTCATGCTCTCGTAAAATCTTG 60.550 45.833 0.00 0.00 36.97 3.02
831 957 7.287061 TGAAGATTCAGTCCTTCAACCTTTAA 58.713 34.615 0.00 0.00 43.84 1.52
832 958 7.944554 TGAAGATTCAGTCCTTCAACCTTTAAT 59.055 33.333 0.00 0.00 43.84 1.40
833 959 8.712228 AAGATTCAGTCCTTCAACCTTTAATT 57.288 30.769 0.00 0.00 0.00 1.40
834 960 9.807921 AAGATTCAGTCCTTCAACCTTTAATTA 57.192 29.630 0.00 0.00 0.00 1.40
843 969 6.039829 CCTTCAACCTTTAATTAGGCATCTCC 59.960 42.308 0.00 0.00 38.99 3.71
876 1002 4.213482 CACACTAAGTAAGCCCTTGTGTTC 59.787 45.833 0.00 0.00 35.98 3.18
907 1033 1.860676 GTGGTGCAGACGAACTAACA 58.139 50.000 0.00 0.00 0.00 2.41
942 1068 2.683211 ACCCTTCCTTGTTTCAGCAT 57.317 45.000 0.00 0.00 0.00 3.79
983 1113 0.387367 GCTGCTTGAAGACGAGACGA 60.387 55.000 0.00 0.00 0.00 4.20
1060 1193 1.025113 CCGTGACTCGCTCTACAGGA 61.025 60.000 0.00 0.00 38.35 3.86
1138 1276 2.894765 TCGTCCATCACCTTGTTGACTA 59.105 45.455 0.00 0.00 0.00 2.59
1139 1277 2.993899 CGTCCATCACCTTGTTGACTAC 59.006 50.000 0.00 0.00 0.00 2.73
1141 1279 4.642429 GTCCATCACCTTGTTGACTACTT 58.358 43.478 0.00 0.00 0.00 2.24
1142 1280 4.452455 GTCCATCACCTTGTTGACTACTTG 59.548 45.833 0.00 0.00 0.00 3.16
1340 1764 4.371417 AGGCACCCGGACGACCTA 62.371 66.667 0.73 0.00 0.00 3.08
1370 1794 2.176798 CCTCTCCCTCATCCTCTACACT 59.823 54.545 0.00 0.00 0.00 3.55
1463 1905 5.594199 ACCTACCTTATTGTGTTTTCCCT 57.406 39.130 0.00 0.00 0.00 4.20
1465 1907 6.008331 ACCTACCTTATTGTGTTTTCCCTTC 58.992 40.000 0.00 0.00 0.00 3.46
1469 1911 7.050970 ACCTTATTGTGTTTTCCCTTCTTTC 57.949 36.000 0.00 0.00 0.00 2.62
1470 1912 6.839134 ACCTTATTGTGTTTTCCCTTCTTTCT 59.161 34.615 0.00 0.00 0.00 2.52
1471 1913 7.344612 ACCTTATTGTGTTTTCCCTTCTTTCTT 59.655 33.333 0.00 0.00 0.00 2.52
1472 1914 8.204160 CCTTATTGTGTTTTCCCTTCTTTCTTT 58.796 33.333 0.00 0.00 0.00 2.52
1473 1915 9.249457 CTTATTGTGTTTTCCCTTCTTTCTTTC 57.751 33.333 0.00 0.00 0.00 2.62
1474 1916 6.850752 TTGTGTTTTCCCTTCTTTCTTTCT 57.149 33.333 0.00 0.00 0.00 2.52
1475 1917 6.850752 TGTGTTTTCCCTTCTTTCTTTCTT 57.149 33.333 0.00 0.00 0.00 2.52
1476 1918 7.239763 TGTGTTTTCCCTTCTTTCTTTCTTT 57.760 32.000 0.00 0.00 0.00 2.52
1477 1919 7.676004 TGTGTTTTCCCTTCTTTCTTTCTTTT 58.324 30.769 0.00 0.00 0.00 2.27
1478 1920 8.154203 TGTGTTTTCCCTTCTTTCTTTCTTTTT 58.846 29.630 0.00 0.00 0.00 1.94
1518 1960 7.014134 TGTTTGTTCATGGACATTAACTCATGT 59.986 33.333 18.31 0.00 40.25 3.21
1523 1965 4.032960 TGGACATTAACTCATGTTGGCT 57.967 40.909 0.00 0.00 37.52 4.75
1524 1966 3.758023 TGGACATTAACTCATGTTGGCTG 59.242 43.478 0.00 0.00 37.52 4.85
1591 2204 0.401105 CCCAGACCAGGATGATCCCT 60.401 60.000 8.08 0.00 39.69 4.20
1602 2215 2.050144 GATGATCCCTAACCAGCAGGA 58.950 52.381 0.35 0.00 38.69 3.86
1631 2244 0.669625 GTCCGTGTCCAACTACAGCC 60.670 60.000 0.00 0.00 0.00 4.85
1640 2253 1.270907 CAACTACAGCCTCCAGGAGT 58.729 55.000 15.86 0.00 37.39 3.85
1657 2273 2.283173 TCCAGCTCGCAGACCAGA 60.283 61.111 0.00 0.00 0.00 3.86
1699 2315 2.977178 CTCGAGTCCAGCAAGGCT 59.023 61.111 3.62 0.00 40.77 4.58
1787 2403 0.537188 ACCCGCAATCTCTGGTACTG 59.463 55.000 0.00 0.00 0.00 2.74
1788 2404 0.537188 CCCGCAATCTCTGGTACTGT 59.463 55.000 0.00 0.00 0.00 3.55
1810 2643 6.898041 TGTACATTACATTGAGCAACTTCAC 58.102 36.000 0.00 0.00 32.89 3.18
1811 2644 6.484977 TGTACATTACATTGAGCAACTTCACA 59.515 34.615 0.00 0.00 32.89 3.58
1812 2654 6.579666 ACATTACATTGAGCAACTTCACAT 57.420 33.333 0.00 0.00 0.00 3.21
1931 2802 3.000825 TGACGCAATGTACGTATGAATGC 59.999 43.478 0.00 7.01 45.24 3.56
1937 2808 6.292114 CGCAATGTACGTATGAATGCTTTCTA 60.292 38.462 12.96 1.36 32.78 2.10
1942 2813 9.935682 ATGTACGTATGAATGCTTTCTAATTTG 57.064 29.630 12.96 2.33 32.78 2.32
1946 2817 8.511321 ACGTATGAATGCTTTCTAATTTGTTCA 58.489 29.630 12.96 0.00 32.78 3.18
1957 3032 9.387123 CTTTCTAATTTGTTCACTAGCTTGTTC 57.613 33.333 0.00 0.00 0.00 3.18
2025 3235 1.911357 TGTGGATCTCTGTTGCCATCT 59.089 47.619 0.00 0.00 32.26 2.90
2108 3318 0.677288 TCATCTCGGTGTGGTTCGTT 59.323 50.000 0.00 0.00 0.00 3.85
2234 3444 4.863925 GCGTGGCTCTCTCTCGGC 62.864 72.222 0.00 0.00 0.00 5.54
2321 3712 1.747206 GCCATTCAGGTTCGCCACTAT 60.747 52.381 0.00 0.00 40.61 2.12
2411 4654 2.698274 ACTTCATTTTCCGGGCTGTTTT 59.302 40.909 0.00 0.00 0.00 2.43
2639 4979 2.122954 AAAGCCCTCTCCCTCGGT 59.877 61.111 0.00 0.00 0.00 4.69
3042 5382 1.366679 CTACTGGTACGAGCTCGACA 58.633 55.000 40.58 30.44 43.02 4.35
3077 5417 4.070552 GACCTCACGGCGCTCCTT 62.071 66.667 6.90 0.00 0.00 3.36
3428 5768 1.153568 CCAGCACACCGATGACGAT 60.154 57.895 0.00 0.00 42.66 3.73
3591 5961 1.321016 CGTGGTGAACTACGTGTACG 58.679 55.000 10.75 2.43 44.21 3.67
3671 6041 0.904865 TGCTCAAGGTCGGGATCACT 60.905 55.000 0.00 0.00 0.00 3.41
3682 6052 5.420421 AGGTCGGGATCACTTATGAGATATG 59.580 44.000 0.00 0.00 38.57 1.78
3683 6053 5.419155 GGTCGGGATCACTTATGAGATATGA 59.581 44.000 0.00 0.00 38.57 2.15
3684 6054 6.405286 GGTCGGGATCACTTATGAGATATGAG 60.405 46.154 0.00 0.00 38.57 2.90
3685 6055 6.375736 GTCGGGATCACTTATGAGATATGAGA 59.624 42.308 0.00 0.00 38.57 3.27
3686 6056 7.068103 GTCGGGATCACTTATGAGATATGAGAT 59.932 40.741 0.00 0.00 38.57 2.75
3688 6058 9.076781 CGGGATCACTTATGAGATATGAGATAT 57.923 37.037 0.00 0.00 38.57 1.63
3708 6082 9.709495 GAGATATAGATCAATGTTTCTTCTGCT 57.291 33.333 0.00 0.00 34.17 4.24
3721 6095 2.945008 TCTTCTGCTGAACTTGTTGGTG 59.055 45.455 1.33 0.00 0.00 4.17
3722 6096 2.708216 TCTGCTGAACTTGTTGGTGA 57.292 45.000 0.00 0.00 0.00 4.02
3744 6150 8.250332 GGTGATAAACCTCTGAATTTTGCATTA 58.750 33.333 0.00 0.00 46.55 1.90
3748 6154 3.443681 ACCTCTGAATTTTGCATTACCCG 59.556 43.478 0.00 0.00 0.00 5.28
3796 6233 9.113838 AGAGTAATGCTACATTTTTGTAGATGG 57.886 33.333 15.43 0.00 43.16 3.51
3798 6235 9.113838 AGTAATGCTACATTTTTGTAGATGGAG 57.886 33.333 15.43 0.00 43.16 3.86
3817 6254 4.563524 GAGCATTACTCGTGTTGTACAC 57.436 45.455 0.00 0.00 45.26 2.90
3821 6258 2.798976 TACTCGTGTTGTACACCACC 57.201 50.000 16.83 1.17 45.93 4.61
3824 6261 0.825410 TCGTGTTGTACACCACCTGT 59.175 50.000 16.83 0.00 45.93 4.00
3838 6275 3.037431 CACCTGTGGAGAAAGAGTCTG 57.963 52.381 0.00 0.00 36.41 3.51
3839 6276 2.366916 CACCTGTGGAGAAAGAGTCTGT 59.633 50.000 0.00 0.00 36.41 3.41
3840 6277 2.630580 ACCTGTGGAGAAAGAGTCTGTC 59.369 50.000 1.61 1.61 36.41 3.51
3841 6278 2.896685 CCTGTGGAGAAAGAGTCTGTCT 59.103 50.000 12.97 12.97 36.41 3.41
3842 6279 4.082845 CCTGTGGAGAAAGAGTCTGTCTA 58.917 47.826 13.09 0.00 36.41 2.59
3843 6280 4.157656 CCTGTGGAGAAAGAGTCTGTCTAG 59.842 50.000 13.09 6.82 36.41 2.43
3844 6281 4.082845 TGTGGAGAAAGAGTCTGTCTAGG 58.917 47.826 13.09 0.00 36.41 3.02
3845 6282 4.202577 TGTGGAGAAAGAGTCTGTCTAGGA 60.203 45.833 13.09 0.00 36.41 2.94
3846 6283 4.157105 GTGGAGAAAGAGTCTGTCTAGGAC 59.843 50.000 13.09 6.48 36.41 3.85
3847 6284 4.202577 TGGAGAAAGAGTCTGTCTAGGACA 60.203 45.833 13.09 7.46 40.50 4.02
3848 6285 4.767928 GGAGAAAGAGTCTGTCTAGGACAA 59.232 45.833 13.09 0.00 42.26 3.18
3849 6286 5.244178 GGAGAAAGAGTCTGTCTAGGACAAA 59.756 44.000 13.09 0.00 42.26 2.83
3850 6287 6.071051 GGAGAAAGAGTCTGTCTAGGACAAAT 60.071 42.308 13.09 0.00 42.26 2.32
3851 6288 6.930731 AGAAAGAGTCTGTCTAGGACAAATC 58.069 40.000 11.41 3.15 42.26 2.17
3852 6289 6.723977 AGAAAGAGTCTGTCTAGGACAAATCT 59.276 38.462 11.41 4.98 42.26 2.40
3853 6290 7.891183 AGAAAGAGTCTGTCTAGGACAAATCTA 59.109 37.037 11.41 0.00 42.26 1.98
3854 6291 7.639113 AAGAGTCTGTCTAGGACAAATCTAG 57.361 40.000 0.00 0.00 42.26 2.43
3855 6292 6.126409 AGAGTCTGTCTAGGACAAATCTAGG 58.874 44.000 0.00 0.00 42.26 3.02
3856 6293 5.833340 AGTCTGTCTAGGACAAATCTAGGT 58.167 41.667 2.04 0.00 42.26 3.08
3857 6294 6.971340 AGTCTGTCTAGGACAAATCTAGGTA 58.029 40.000 2.04 0.00 42.26 3.08
3858 6295 7.588169 AGTCTGTCTAGGACAAATCTAGGTAT 58.412 38.462 2.04 0.00 42.26 2.73
3859 6296 7.504238 AGTCTGTCTAGGACAAATCTAGGTATG 59.496 40.741 2.04 0.00 42.26 2.39
3860 6297 7.502895 GTCTGTCTAGGACAAATCTAGGTATGA 59.497 40.741 2.04 0.00 42.26 2.15
3861 6298 7.502895 TCTGTCTAGGACAAATCTAGGTATGAC 59.497 40.741 2.04 0.00 42.26 3.06
3862 6299 7.123383 TGTCTAGGACAAATCTAGGTATGACA 58.877 38.462 0.00 0.00 39.78 3.58
3863 6300 7.785028 TGTCTAGGACAAATCTAGGTATGACAT 59.215 37.037 0.00 0.00 39.78 3.06
3864 6301 9.298250 GTCTAGGACAAATCTAGGTATGACATA 57.702 37.037 0.00 0.00 35.97 2.29
3865 6302 9.521841 TCTAGGACAAATCTAGGTATGACATAG 57.478 37.037 0.00 0.00 35.97 2.23
3866 6303 9.303116 CTAGGACAAATCTAGGTATGACATAGT 57.697 37.037 0.00 0.00 34.41 2.12
3867 6304 8.554490 AGGACAAATCTAGGTATGACATAGTT 57.446 34.615 0.00 0.00 34.41 2.24
3868 6305 9.656323 AGGACAAATCTAGGTATGACATAGTTA 57.344 33.333 0.00 0.00 34.41 2.24
3869 6306 9.915629 GGACAAATCTAGGTATGACATAGTTAG 57.084 37.037 0.00 1.77 34.41 2.34
3886 6323 9.751542 ACATAGTTAGTTATGTCACATCTAAGC 57.248 33.333 0.00 0.00 39.45 3.09
3887 6324 9.973450 CATAGTTAGTTATGTCACATCTAAGCT 57.027 33.333 0.00 1.16 0.00 3.74
3888 6325 9.973450 ATAGTTAGTTATGTCACATCTAAGCTG 57.027 33.333 0.00 0.00 0.00 4.24
3889 6326 8.067751 AGTTAGTTATGTCACATCTAAGCTGA 57.932 34.615 0.00 0.00 0.00 4.26
3890 6327 8.700051 AGTTAGTTATGTCACATCTAAGCTGAT 58.300 33.333 0.00 0.00 0.00 2.90
3891 6328 8.759641 GTTAGTTATGTCACATCTAAGCTGATG 58.240 37.037 11.48 11.48 46.61 3.07
3901 6338 6.446781 CATCTAAGCTGATGTCCATTTTGT 57.553 37.500 5.99 0.00 39.05 2.83
3902 6339 6.860080 CATCTAAGCTGATGTCCATTTTGTT 58.140 36.000 5.99 0.00 39.05 2.83
3903 6340 6.899393 TCTAAGCTGATGTCCATTTTGTTT 57.101 33.333 0.00 0.00 0.00 2.83
3904 6341 6.680810 TCTAAGCTGATGTCCATTTTGTTTG 58.319 36.000 0.00 0.00 0.00 2.93
3905 6342 4.942761 AGCTGATGTCCATTTTGTTTGT 57.057 36.364 0.00 0.00 0.00 2.83
3906 6343 4.624015 AGCTGATGTCCATTTTGTTTGTG 58.376 39.130 0.00 0.00 0.00 3.33
3907 6344 4.341806 AGCTGATGTCCATTTTGTTTGTGA 59.658 37.500 0.00 0.00 0.00 3.58
3908 6345 5.011329 AGCTGATGTCCATTTTGTTTGTGAT 59.989 36.000 0.00 0.00 0.00 3.06
3909 6346 5.697633 GCTGATGTCCATTTTGTTTGTGATT 59.302 36.000 0.00 0.00 0.00 2.57
3910 6347 6.203338 GCTGATGTCCATTTTGTTTGTGATTT 59.797 34.615 0.00 0.00 0.00 2.17
3911 6348 7.254863 GCTGATGTCCATTTTGTTTGTGATTTT 60.255 33.333 0.00 0.00 0.00 1.82
3912 6349 8.503458 TGATGTCCATTTTGTTTGTGATTTTT 57.497 26.923 0.00 0.00 0.00 1.94
3958 6395 9.573166 TTGCTGCATTATATATTTGTAGGAACT 57.427 29.630 1.84 0.00 46.37 3.01
3959 6396 9.573166 TGCTGCATTATATATTTGTAGGAACTT 57.427 29.630 0.00 0.00 41.75 2.66
3973 6410 8.918202 TTGTAGGAACTTAAATGTGACAATCT 57.082 30.769 0.00 0.00 41.75 2.40
3974 6411 8.918202 TGTAGGAACTTAAATGTGACAATCTT 57.082 30.769 0.00 0.00 41.75 2.40
4070 6508 6.798427 TGAGCTAATTAGGAATCACTCACT 57.202 37.500 14.28 0.00 0.00 3.41
4071 6509 6.810911 TGAGCTAATTAGGAATCACTCACTC 58.189 40.000 14.28 8.16 0.00 3.51
4075 6513 3.895232 TTAGGAATCACTCACTCCTGC 57.105 47.619 0.02 0.00 39.93 4.85
4106 6544 0.679505 GCCTCATGTCGCATACCCTA 59.320 55.000 0.00 0.00 0.00 3.53
4107 6545 1.276421 GCCTCATGTCGCATACCCTAT 59.724 52.381 0.00 0.00 0.00 2.57
4108 6546 2.496070 GCCTCATGTCGCATACCCTATA 59.504 50.000 0.00 0.00 0.00 1.31
4109 6547 3.429547 GCCTCATGTCGCATACCCTATAG 60.430 52.174 0.00 0.00 0.00 1.31
4219 6657 7.065803 CGGAACAGAATTACACAGAATACCATT 59.934 37.037 0.00 0.00 0.00 3.16
4295 6733 7.445402 GCCTGCCTATCAATCTTAACAATCTTA 59.555 37.037 0.00 0.00 0.00 2.10
4324 6762 4.575885 ACAATAAACTTAGAGGCGCTGAA 58.424 39.130 7.64 0.00 0.00 3.02
4339 6777 3.560503 CGCTGAACGCTTCCATTTTTAA 58.439 40.909 0.00 0.00 36.13 1.52
4355 6793 9.713684 TCCATTTTTAAATCCACATAAGGAGAT 57.286 29.630 0.00 0.00 41.90 2.75
4480 6919 1.004918 CACGAAGTTCCGCCTCCTT 60.005 57.895 0.00 0.00 41.61 3.36
4490 6929 2.982130 GCCTCCTTCGCTCCAGAA 59.018 61.111 0.00 0.00 0.00 3.02
4494 6933 0.390472 CTCCTTCGCTCCAGAACACC 60.390 60.000 0.00 0.00 0.00 4.16
4581 7020 0.746063 AGCAGATCTCAAGCTCTCCG 59.254 55.000 0.30 0.00 32.05 4.63
4662 7101 4.858692 CACGATCATTTTCTTTTTGCGGAT 59.141 37.500 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.617532 GCTCCATATCTTCCATGGCTCC 60.618 54.545 6.96 0.00 42.36 4.70
1 2 2.305343 AGCTCCATATCTTCCATGGCTC 59.695 50.000 6.96 0.00 42.36 4.70
2 3 2.346529 AGCTCCATATCTTCCATGGCT 58.653 47.619 6.96 0.00 42.36 4.75
3 4 2.875094 AGCTCCATATCTTCCATGGC 57.125 50.000 6.96 0.00 42.36 4.40
14 15 9.062524 ACACGCAATTTTAATTATAGCTCCATA 57.937 29.630 0.00 0.00 0.00 2.74
15 16 7.940850 ACACGCAATTTTAATTATAGCTCCAT 58.059 30.769 0.00 0.00 0.00 3.41
16 17 7.328277 ACACGCAATTTTAATTATAGCTCCA 57.672 32.000 0.00 0.00 0.00 3.86
17 18 9.893305 ATAACACGCAATTTTAATTATAGCTCC 57.107 29.630 0.00 0.00 0.00 4.70
28 29 9.232082 GCATCTAATTGATAACACGCAATTTTA 57.768 29.630 0.00 0.00 40.68 1.52
29 30 7.222611 GGCATCTAATTGATAACACGCAATTTT 59.777 33.333 0.00 0.00 40.68 1.82
30 31 6.697019 GGCATCTAATTGATAACACGCAATTT 59.303 34.615 0.00 0.00 40.68 1.82
31 32 6.208644 GGCATCTAATTGATAACACGCAATT 58.791 36.000 0.00 0.00 44.36 2.32
32 33 5.560760 CGGCATCTAATTGATAACACGCAAT 60.561 40.000 0.00 0.00 36.35 3.56
33 34 4.260579 CGGCATCTAATTGATAACACGCAA 60.261 41.667 0.00 0.00 33.36 4.85
34 35 3.247411 CGGCATCTAATTGATAACACGCA 59.753 43.478 0.00 0.00 33.36 5.24
35 36 3.493129 TCGGCATCTAATTGATAACACGC 59.507 43.478 0.00 0.00 33.36 5.34
36 37 5.845985 ATCGGCATCTAATTGATAACACG 57.154 39.130 0.00 0.00 33.36 4.49
37 38 6.874134 ACCTATCGGCATCTAATTGATAACAC 59.126 38.462 0.00 0.00 33.36 3.32
38 39 6.873605 CACCTATCGGCATCTAATTGATAACA 59.126 38.462 0.00 0.00 33.36 2.41
39 40 7.097192 TCACCTATCGGCATCTAATTGATAAC 58.903 38.462 0.00 0.00 33.36 1.89
40 41 7.239763 TCACCTATCGGCATCTAATTGATAA 57.760 36.000 0.00 0.00 33.36 1.75
41 42 6.850752 TCACCTATCGGCATCTAATTGATA 57.149 37.500 0.00 0.00 33.36 2.15
42 43 5.745312 TCACCTATCGGCATCTAATTGAT 57.255 39.130 0.00 0.00 35.40 2.57
43 44 5.337571 GGATCACCTATCGGCATCTAATTGA 60.338 44.000 0.00 0.00 35.21 2.57
44 45 4.872691 GGATCACCTATCGGCATCTAATTG 59.127 45.833 0.00 0.00 35.21 2.32
45 46 4.532126 TGGATCACCTATCGGCATCTAATT 59.468 41.667 0.00 0.00 35.21 1.40
46 47 4.096681 TGGATCACCTATCGGCATCTAAT 58.903 43.478 0.00 0.00 35.21 1.73
47 48 3.506398 TGGATCACCTATCGGCATCTAA 58.494 45.455 0.00 0.00 35.21 2.10
48 49 3.169512 TGGATCACCTATCGGCATCTA 57.830 47.619 0.00 0.00 35.21 1.98
49 50 2.015456 TGGATCACCTATCGGCATCT 57.985 50.000 0.00 0.00 35.21 2.90
50 51 2.037772 ACTTGGATCACCTATCGGCATC 59.962 50.000 0.00 0.00 35.21 3.91
51 52 2.050144 ACTTGGATCACCTATCGGCAT 58.950 47.619 0.00 0.00 35.21 4.40
52 53 1.496060 ACTTGGATCACCTATCGGCA 58.504 50.000 0.00 0.00 35.21 5.69
53 54 2.622064 AACTTGGATCACCTATCGGC 57.378 50.000 0.00 0.00 35.21 5.54
54 55 3.552273 CGGTAACTTGGATCACCTATCGG 60.552 52.174 0.00 0.00 35.21 4.18
55 56 3.639538 CGGTAACTTGGATCACCTATCG 58.360 50.000 0.00 0.00 35.21 2.92
56 57 3.181469 TGCGGTAACTTGGATCACCTATC 60.181 47.826 0.00 0.00 37.04 2.08
57 58 2.769663 TGCGGTAACTTGGATCACCTAT 59.230 45.455 0.00 0.00 37.04 2.57
58 59 2.181125 TGCGGTAACTTGGATCACCTA 58.819 47.619 0.00 0.00 37.04 3.08
59 60 0.981183 TGCGGTAACTTGGATCACCT 59.019 50.000 0.00 0.00 37.04 4.00
60 61 2.038387 ATGCGGTAACTTGGATCACC 57.962 50.000 0.00 0.00 0.00 4.02
61 62 3.006940 TGAATGCGGTAACTTGGATCAC 58.993 45.455 0.00 0.00 0.00 3.06
62 63 3.006940 GTGAATGCGGTAACTTGGATCA 58.993 45.455 0.00 0.00 0.00 2.92
63 64 3.270877 AGTGAATGCGGTAACTTGGATC 58.729 45.455 0.00 0.00 0.00 3.36
64 65 3.350219 AGTGAATGCGGTAACTTGGAT 57.650 42.857 0.00 0.00 0.00 3.41
65 66 2.811431 CAAGTGAATGCGGTAACTTGGA 59.189 45.455 12.03 0.00 43.64 3.53
66 67 3.201726 CAAGTGAATGCGGTAACTTGG 57.798 47.619 12.03 0.00 43.64 3.61
67 68 2.552315 ACCAAGTGAATGCGGTAACTTG 59.448 45.455 12.63 12.63 45.81 3.16
68 69 2.812011 GACCAAGTGAATGCGGTAACTT 59.188 45.455 0.00 0.00 33.20 2.66
69 70 2.224426 TGACCAAGTGAATGCGGTAACT 60.224 45.455 0.00 0.00 0.00 2.24
70 71 2.147958 TGACCAAGTGAATGCGGTAAC 58.852 47.619 0.00 0.00 0.00 2.50
71 72 2.422597 CTGACCAAGTGAATGCGGTAA 58.577 47.619 0.00 0.00 0.00 2.85
72 73 1.338674 CCTGACCAAGTGAATGCGGTA 60.339 52.381 0.00 0.00 0.00 4.02
73 74 0.606401 CCTGACCAAGTGAATGCGGT 60.606 55.000 0.00 0.00 0.00 5.68
74 75 1.308069 CCCTGACCAAGTGAATGCGG 61.308 60.000 0.00 0.00 0.00 5.69
75 76 0.321564 TCCCTGACCAAGTGAATGCG 60.322 55.000 0.00 0.00 0.00 4.73
76 77 1.815003 CTTCCCTGACCAAGTGAATGC 59.185 52.381 0.00 0.00 0.00 3.56
77 78 3.077359 GTCTTCCCTGACCAAGTGAATG 58.923 50.000 0.00 0.00 0.00 2.67
78 79 2.711009 TGTCTTCCCTGACCAAGTGAAT 59.289 45.455 0.00 0.00 36.21 2.57
79 80 2.123589 TGTCTTCCCTGACCAAGTGAA 58.876 47.619 0.00 0.00 36.21 3.18
80 81 1.801242 TGTCTTCCCTGACCAAGTGA 58.199 50.000 0.00 0.00 36.21 3.41
81 82 2.224621 ACATGTCTTCCCTGACCAAGTG 60.225 50.000 0.00 0.00 36.21 3.16
82 83 2.057922 ACATGTCTTCCCTGACCAAGT 58.942 47.619 0.00 0.00 36.21 3.16
83 84 2.867109 ACATGTCTTCCCTGACCAAG 57.133 50.000 0.00 0.00 36.21 3.61
84 85 3.221771 CAAACATGTCTTCCCTGACCAA 58.778 45.455 0.00 0.00 36.21 3.67
85 86 2.488891 CCAAACATGTCTTCCCTGACCA 60.489 50.000 0.00 0.00 36.21 4.02
86 87 2.162681 CCAAACATGTCTTCCCTGACC 58.837 52.381 0.00 0.00 36.21 4.02
87 88 2.863809 ACCAAACATGTCTTCCCTGAC 58.136 47.619 0.00 0.00 37.47 3.51
88 89 3.221771 CAACCAAACATGTCTTCCCTGA 58.778 45.455 0.00 0.00 0.00 3.86
89 90 2.958355 ACAACCAAACATGTCTTCCCTG 59.042 45.455 0.00 0.00 0.00 4.45
90 91 3.312736 ACAACCAAACATGTCTTCCCT 57.687 42.857 0.00 0.00 0.00 4.20
91 92 4.339814 TGTAACAACCAAACATGTCTTCCC 59.660 41.667 0.00 0.00 0.00 3.97
92 93 5.508200 TGTAACAACCAAACATGTCTTCC 57.492 39.130 0.00 0.00 0.00 3.46
93 94 4.976116 GCTGTAACAACCAAACATGTCTTC 59.024 41.667 0.00 0.00 0.00 2.87
94 95 4.202111 GGCTGTAACAACCAAACATGTCTT 60.202 41.667 0.00 0.00 0.00 3.01
95 96 3.317993 GGCTGTAACAACCAAACATGTCT 59.682 43.478 0.00 0.00 0.00 3.41
96 97 3.638484 GGCTGTAACAACCAAACATGTC 58.362 45.455 0.00 0.00 0.00 3.06
97 98 2.034053 CGGCTGTAACAACCAAACATGT 59.966 45.455 0.00 0.00 0.00 3.21
98 99 2.660490 CGGCTGTAACAACCAAACATG 58.340 47.619 0.00 0.00 0.00 3.21
99 100 1.000717 GCGGCTGTAACAACCAAACAT 60.001 47.619 0.00 0.00 0.00 2.71
100 101 0.382515 GCGGCTGTAACAACCAAACA 59.617 50.000 0.00 0.00 0.00 2.83
101 102 0.382515 TGCGGCTGTAACAACCAAAC 59.617 50.000 0.00 0.00 0.00 2.93
102 103 0.382515 GTGCGGCTGTAACAACCAAA 59.617 50.000 0.00 0.00 0.00 3.28
103 104 1.777030 CGTGCGGCTGTAACAACCAA 61.777 55.000 0.00 0.00 0.00 3.67
104 105 2.248135 CGTGCGGCTGTAACAACCA 61.248 57.895 0.00 0.00 0.00 3.67
105 106 1.296056 ATCGTGCGGCTGTAACAACC 61.296 55.000 0.00 0.00 0.00 3.77
106 107 0.094730 GATCGTGCGGCTGTAACAAC 59.905 55.000 0.00 0.00 0.00 3.32
107 108 1.017177 GGATCGTGCGGCTGTAACAA 61.017 55.000 0.00 0.00 0.00 2.83
108 109 1.447140 GGATCGTGCGGCTGTAACA 60.447 57.895 0.00 0.00 0.00 2.41
109 110 2.171725 GGGATCGTGCGGCTGTAAC 61.172 63.158 0.00 0.00 0.00 2.50
110 111 1.895020 AAGGGATCGTGCGGCTGTAA 61.895 55.000 0.00 0.00 0.00 2.41
111 112 1.895020 AAAGGGATCGTGCGGCTGTA 61.895 55.000 0.00 0.00 0.00 2.74
112 113 2.748058 AAAAGGGATCGTGCGGCTGT 62.748 55.000 0.00 0.00 0.00 4.40
113 114 2.040544 AAAAGGGATCGTGCGGCTG 61.041 57.895 0.00 0.00 0.00 4.85
114 115 2.040544 CAAAAGGGATCGTGCGGCT 61.041 57.895 0.00 0.00 0.00 5.52
115 116 1.022451 TACAAAAGGGATCGTGCGGC 61.022 55.000 0.00 0.00 0.00 6.53
121 122 2.544267 GAGCGGAATACAAAAGGGATCG 59.456 50.000 0.00 0.00 0.00 3.69
152 153 8.243426 GTGTCACCAAGCTTTATATTGATCAAA 58.757 33.333 13.09 2.57 0.00 2.69
163 164 4.440826 TTTAGGGTGTCACCAAGCTTTA 57.559 40.909 23.48 3.43 41.02 1.85
164 165 3.306472 TTTAGGGTGTCACCAAGCTTT 57.694 42.857 23.48 4.33 41.02 3.51
224 226 1.462791 GTGTGGCGTTCGTTTCTTTG 58.537 50.000 0.00 0.00 0.00 2.77
243 245 1.777030 TTGCTGTACGTGTTTGGCCG 61.777 55.000 0.00 0.00 0.00 6.13
255 257 2.048597 CGCACCGGACTTGCTGTA 60.049 61.111 9.46 0.00 37.87 2.74
283 285 4.201428 GCGTCAATGCAAAAAGATTTCTCG 60.201 41.667 0.00 0.00 34.15 4.04
384 386 4.822036 TTGTTAGGATTTGGACACGTTG 57.178 40.909 0.00 0.00 0.00 4.10
385 387 5.838531 TTTTGTTAGGATTTGGACACGTT 57.161 34.783 0.00 0.00 0.00 3.99
386 388 5.838531 TTTTTGTTAGGATTTGGACACGT 57.161 34.783 0.00 0.00 0.00 4.49
387 389 5.861787 GGATTTTTGTTAGGATTTGGACACG 59.138 40.000 0.00 0.00 0.00 4.49
408 410 2.949644 GCAGCCACCGTATTTTTAGGAT 59.050 45.455 0.00 0.00 0.00 3.24
460 462 1.657751 GACGAATCCTTTGCCCTGCC 61.658 60.000 0.00 0.00 0.00 4.85
549 551 2.108157 GATGTCATACCGGCGGCA 59.892 61.111 28.71 15.48 0.00 5.69
550 552 1.664965 GAGATGTCATACCGGCGGC 60.665 63.158 28.71 10.02 0.00 6.53
552 554 0.039074 GAGGAGATGTCATACCGGCG 60.039 60.000 0.00 0.00 0.00 6.46
582 610 4.513442 CGAAGAGGGATAGAGAGATCGAT 58.487 47.826 0.00 0.00 0.00 3.59
615 647 2.094854 GTGATTCTCTACGAACCACCGT 60.095 50.000 0.00 0.00 39.79 4.83
642 741 6.417930 GTCAAAAGTCAAAGCACTACAATTCC 59.582 38.462 0.00 0.00 0.00 3.01
648 747 4.515432 GACGTCAAAAGTCAAAGCACTAC 58.485 43.478 11.55 0.00 38.42 2.73
711 822 2.758979 TCTTGTACGAATCCAGGAGACC 59.241 50.000 0.00 0.00 0.00 3.85
743 854 9.649167 TGATCTTGCATGATATGTACATTAGAG 57.351 33.333 14.77 2.44 0.00 2.43
744 855 9.649167 CTGATCTTGCATGATATGTACATTAGA 57.351 33.333 14.77 0.00 0.00 2.10
745 856 9.433153 ACTGATCTTGCATGATATGTACATTAG 57.567 33.333 14.77 1.39 0.00 1.73
747 858 8.155510 AGACTGATCTTGCATGATATGTACATT 58.844 33.333 14.77 1.88 0.00 2.71
786 912 6.533012 TCTTCAAGATTTTACGAGAGCATGAG 59.467 38.462 0.00 0.00 0.00 2.90
807 933 7.745620 TTAAAGGTTGAAGGACTGAATCTTC 57.254 36.000 0.00 0.00 39.66 2.87
831 957 2.037772 GTGGACGATGGAGATGCCTAAT 59.962 50.000 0.00 0.00 37.63 1.73
832 958 1.412710 GTGGACGATGGAGATGCCTAA 59.587 52.381 0.00 0.00 37.63 2.69
833 959 1.040646 GTGGACGATGGAGATGCCTA 58.959 55.000 0.00 0.00 37.63 3.93
834 960 1.690219 GGTGGACGATGGAGATGCCT 61.690 60.000 0.00 0.00 37.63 4.75
843 969 2.743636 ACTTAGTGTGGTGGACGATG 57.256 50.000 0.00 0.00 0.00 3.84
876 1002 1.443872 GCACCACGAGTAGGACACG 60.444 63.158 0.00 0.00 38.15 4.49
907 1033 2.269940 AGGGTTTAGTGTGCTGGATCT 58.730 47.619 0.00 0.00 0.00 2.75
942 1068 1.758440 AACCTGCCAGTCAAGCTCGA 61.758 55.000 0.00 0.00 0.00 4.04
983 1113 5.070180 ACCGACATGATCTTGATCTTGATCT 59.930 40.000 24.01 9.40 39.63 2.75
1119 1257 4.273148 AGTAGTCAACAAGGTGATGGAC 57.727 45.455 0.00 0.00 0.00 4.02
1138 1276 2.222027 GCACAGCTGGTTAAGTCAAGT 58.778 47.619 19.93 0.00 0.00 3.16
1139 1277 1.537202 GGCACAGCTGGTTAAGTCAAG 59.463 52.381 19.93 0.00 0.00 3.02
1141 1279 0.472044 TGGCACAGCTGGTTAAGTCA 59.528 50.000 19.93 7.10 0.00 3.41
1142 1280 0.875059 GTGGCACAGCTGGTTAAGTC 59.125 55.000 19.93 4.41 41.80 3.01
1340 1764 3.999297 GAGGGAGAGGACGCCGAGT 62.999 68.421 0.00 0.00 36.84 4.18
1370 1794 1.383664 CAGGGGCAGGAGGATGAGA 60.384 63.158 0.00 0.00 0.00 3.27
1476 1918 5.643379 ACAAACACAAGAGAGCTCAAAAA 57.357 34.783 17.77 0.00 0.00 1.94
1477 1919 5.182950 TGAACAAACACAAGAGAGCTCAAAA 59.817 36.000 17.77 0.00 0.00 2.44
1478 1920 4.699735 TGAACAAACACAAGAGAGCTCAAA 59.300 37.500 17.77 0.00 0.00 2.69
1479 1921 4.260985 TGAACAAACACAAGAGAGCTCAA 58.739 39.130 17.77 0.00 0.00 3.02
1518 1960 2.682846 CCCCTACATGCCAGCCAA 59.317 61.111 0.00 0.00 0.00 4.52
1523 1965 4.108299 CGTGCCCCCTACATGCCA 62.108 66.667 0.00 0.00 0.00 4.92
1524 1966 3.638592 AACGTGCCCCCTACATGCC 62.639 63.158 0.00 0.00 0.00 4.40
1574 2187 2.370189 GGTTAGGGATCATCCTGGTCTG 59.630 54.545 2.93 0.00 37.75 3.51
1591 2204 1.592400 CGTCCTCGTCCTGCTGGTTA 61.592 60.000 9.73 0.00 34.23 2.85
1631 2244 3.074999 GCGAGCTGGACTCCTGGAG 62.075 68.421 22.00 22.00 43.01 3.86
1640 2253 1.881903 CTTCTGGTCTGCGAGCTGGA 61.882 60.000 0.00 5.56 31.62 3.86
1657 2273 3.850098 CTTCACCCACTGCGCCCTT 62.850 63.158 4.18 0.00 0.00 3.95
1677 2293 2.570582 CTTGCTGGACTCGAGCCTCC 62.571 65.000 21.36 17.92 35.43 4.30
1699 2315 1.811266 GAAGAGCGCGATCTTGGCA 60.811 57.895 40.61 0.00 39.63 4.92
1787 2403 6.898041 TGTGAAGTTGCTCAATGTAATGTAC 58.102 36.000 0.00 0.00 0.00 2.90
1788 2404 7.686438 ATGTGAAGTTGCTCAATGTAATGTA 57.314 32.000 0.00 0.00 0.00 2.29
1834 2698 4.519350 CACAGCCATCAAGCATCAGATTAT 59.481 41.667 0.00 0.00 34.23 1.28
1890 2761 4.821589 GTCTGGCGCCTTCTCCCG 62.822 72.222 29.70 7.10 0.00 5.14
1904 2775 2.433868 ACGTACATTGCGTCAAGTCT 57.566 45.000 0.00 0.00 38.23 3.24
1931 2802 9.387123 GAACAAGCTAGTGAACAAATTAGAAAG 57.613 33.333 0.00 0.00 0.00 2.62
1937 2808 7.520614 GCTGTAGAACAAGCTAGTGAACAAATT 60.521 37.037 0.00 0.00 0.00 1.82
1941 2812 4.307432 GCTGTAGAACAAGCTAGTGAACA 58.693 43.478 0.00 0.00 0.00 3.18
1942 2813 3.680458 GGCTGTAGAACAAGCTAGTGAAC 59.320 47.826 0.00 0.00 0.00 3.18
1946 2817 2.234908 CCTGGCTGTAGAACAAGCTAGT 59.765 50.000 7.17 0.00 32.98 2.57
1957 3032 2.947652 CACATCAATTCCCTGGCTGTAG 59.052 50.000 0.00 0.00 0.00 2.74
2025 3235 1.048601 ACCGAGAAGAGCAGGAACAA 58.951 50.000 0.00 0.00 0.00 2.83
2108 3318 0.179065 CTCCGATGCTGGCAATGAGA 60.179 55.000 0.00 0.00 0.00 3.27
2321 3712 8.231692 TGAATACAAATGGAGTCAAAAACTGA 57.768 30.769 0.00 0.00 38.74 3.41
2356 4548 6.209589 TGCTCTGAAGTCTGAACTAATGTACT 59.790 38.462 0.00 0.00 33.48 2.73
2357 4549 6.390721 TGCTCTGAAGTCTGAACTAATGTAC 58.609 40.000 0.00 0.00 33.48 2.90
2359 4551 5.474578 TGCTCTGAAGTCTGAACTAATGT 57.525 39.130 0.00 0.00 33.48 2.71
2360 4552 4.869297 CCTGCTCTGAAGTCTGAACTAATG 59.131 45.833 0.00 0.00 33.48 1.90
2372 4564 1.622811 AGTTCAGTCCCTGCTCTGAAG 59.377 52.381 7.68 0.00 46.62 3.02
2639 4979 2.528127 TCCACCCTCGGGAAGCAA 60.528 61.111 9.43 0.00 38.96 3.91
3285 5625 3.425713 CACGCAGCGGAACATGCT 61.426 61.111 21.15 0.00 45.31 3.79
3458 5828 2.038007 TTCTCCTCCTCTGCGGCT 59.962 61.111 0.00 0.00 0.00 5.52
3682 6052 9.709495 AGCAGAAGAAACATTGATCTATATCTC 57.291 33.333 0.00 0.00 32.93 2.75
3683 6053 9.491675 CAGCAGAAGAAACATTGATCTATATCT 57.508 33.333 0.00 0.00 32.93 1.98
3684 6054 9.486497 TCAGCAGAAGAAACATTGATCTATATC 57.514 33.333 0.00 0.00 0.00 1.63
3685 6055 9.842775 TTCAGCAGAAGAAACATTGATCTATAT 57.157 29.630 0.00 0.00 0.00 0.86
3686 6056 9.102757 GTTCAGCAGAAGAAACATTGATCTATA 57.897 33.333 0.00 0.00 33.63 1.31
3688 6058 7.164122 AGTTCAGCAGAAGAAACATTGATCTA 58.836 34.615 0.00 0.00 33.63 1.98
3690 6060 6.251655 AGTTCAGCAGAAGAAACATTGATC 57.748 37.500 0.00 0.00 33.63 2.92
3691 6061 6.040166 ACAAGTTCAGCAGAAGAAACATTGAT 59.960 34.615 0.00 0.00 33.63 2.57
3721 6095 7.706607 GGGTAATGCAAAATTCAGAGGTTTATC 59.293 37.037 0.00 0.00 0.00 1.75
3722 6096 7.555965 GGGTAATGCAAAATTCAGAGGTTTAT 58.444 34.615 0.00 0.00 0.00 1.40
3744 6150 1.120530 GTGTACAGGATCATCCGGGT 58.879 55.000 8.86 8.84 42.75 5.28
3748 6154 8.589338 ACTCTTATATTGTGTACAGGATCATCC 58.411 37.037 0.00 0.00 36.58 3.51
3796 6233 4.563524 GTGTACAACACGAGTAATGCTC 57.436 45.455 0.00 0.00 39.53 4.26
3821 6258 4.157656 CCTAGACAGACTCTTTCTCCACAG 59.842 50.000 0.00 0.00 28.96 3.66
3824 6261 4.202577 TGTCCTAGACAGACTCTTTCTCCA 60.203 45.833 0.00 0.00 37.67 3.86
3828 6265 6.930731 AGATTTGTCCTAGACAGACTCTTTC 58.069 40.000 0.00 0.00 43.69 2.62
3832 6269 5.889289 ACCTAGATTTGTCCTAGACAGACTC 59.111 44.000 0.00 0.00 43.69 3.36
3833 6270 5.833340 ACCTAGATTTGTCCTAGACAGACT 58.167 41.667 0.00 2.58 43.69 3.24
3834 6271 7.502895 TCATACCTAGATTTGTCCTAGACAGAC 59.497 40.741 0.00 0.00 43.69 3.51
3836 6273 7.285629 TGTCATACCTAGATTTGTCCTAGACAG 59.714 40.741 0.00 0.00 43.69 3.51
3838 6275 7.584122 TGTCATACCTAGATTTGTCCTAGAC 57.416 40.000 0.00 0.00 36.58 2.59
3839 6276 9.521841 CTATGTCATACCTAGATTTGTCCTAGA 57.478 37.037 0.00 0.00 36.58 2.43
3840 6277 9.303116 ACTATGTCATACCTAGATTTGTCCTAG 57.697 37.037 0.00 0.00 34.77 3.02
3841 6278 9.656323 AACTATGTCATACCTAGATTTGTCCTA 57.344 33.333 0.00 0.00 0.00 2.94
3842 6279 8.554490 AACTATGTCATACCTAGATTTGTCCT 57.446 34.615 0.00 0.00 0.00 3.85
3843 6280 9.915629 CTAACTATGTCATACCTAGATTTGTCC 57.084 37.037 0.00 0.00 0.00 4.02
3860 6297 9.751542 GCTTAGATGTGACATAACTAACTATGT 57.248 33.333 0.00 0.00 43.62 2.29
3861 6298 9.973450 AGCTTAGATGTGACATAACTAACTATG 57.027 33.333 0.00 0.00 35.71 2.23
3862 6299 9.973450 CAGCTTAGATGTGACATAACTAACTAT 57.027 33.333 0.00 0.00 0.00 2.12
3863 6300 9.185680 TCAGCTTAGATGTGACATAACTAACTA 57.814 33.333 0.00 0.00 0.00 2.24
3864 6301 8.067751 TCAGCTTAGATGTGACATAACTAACT 57.932 34.615 0.00 1.76 0.00 2.24
3865 6302 8.759641 CATCAGCTTAGATGTGACATAACTAAC 58.240 37.037 0.00 0.00 40.35 2.34
3866 6303 8.877808 CATCAGCTTAGATGTGACATAACTAA 57.122 34.615 0.00 2.45 40.35 2.24
3879 6316 7.039504 ACAAACAAAATGGACATCAGCTTAGAT 60.040 33.333 0.00 0.00 0.00 1.98
3880 6317 6.265196 ACAAACAAAATGGACATCAGCTTAGA 59.735 34.615 0.00 0.00 0.00 2.10
3881 6318 6.364165 CACAAACAAAATGGACATCAGCTTAG 59.636 38.462 0.00 0.00 0.00 2.18
3882 6319 6.040278 TCACAAACAAAATGGACATCAGCTTA 59.960 34.615 0.00 0.00 0.00 3.09
3883 6320 5.051816 CACAAACAAAATGGACATCAGCTT 58.948 37.500 0.00 0.00 0.00 3.74
3884 6321 4.341806 TCACAAACAAAATGGACATCAGCT 59.658 37.500 0.00 0.00 0.00 4.24
3885 6322 4.619973 TCACAAACAAAATGGACATCAGC 58.380 39.130 0.00 0.00 0.00 4.26
3886 6323 7.718272 AAATCACAAACAAAATGGACATCAG 57.282 32.000 0.00 0.00 0.00 2.90
3887 6324 8.503458 AAAAATCACAAACAAAATGGACATCA 57.497 26.923 0.00 0.00 0.00 3.07
3932 6369 9.573166 AGTTCCTACAAATATATAATGCAGCAA 57.427 29.630 0.00 0.00 0.00 3.91
3933 6370 9.573166 AAGTTCCTACAAATATATAATGCAGCA 57.427 29.630 0.00 0.00 0.00 4.41
3947 6384 9.349713 AGATTGTCACATTTAAGTTCCTACAAA 57.650 29.630 0.00 0.00 0.00 2.83
3948 6385 8.918202 AGATTGTCACATTTAAGTTCCTACAA 57.082 30.769 0.00 0.00 0.00 2.41
3949 6386 8.918202 AAGATTGTCACATTTAAGTTCCTACA 57.082 30.769 0.00 0.00 0.00 2.74
4003 6440 8.854117 GGCAATCCATAAGATTTCTTTATCAGT 58.146 33.333 0.00 0.00 42.86 3.41
4004 6441 9.075678 AGGCAATCCATAAGATTTCTTTATCAG 57.924 33.333 0.00 0.00 42.86 2.90
4007 6444 9.866655 TGTAGGCAATCCATAAGATTTCTTTAT 57.133 29.630 0.00 0.00 42.86 1.40
4008 6445 9.866655 ATGTAGGCAATCCATAAGATTTCTTTA 57.133 29.630 0.00 0.00 42.86 1.85
4009 6446 8.636213 CATGTAGGCAATCCATAAGATTTCTTT 58.364 33.333 0.00 0.00 42.86 2.52
4010 6447 7.255730 GCATGTAGGCAATCCATAAGATTTCTT 60.256 37.037 0.00 0.00 42.86 2.52
4011 6448 6.208204 GCATGTAGGCAATCCATAAGATTTCT 59.792 38.462 0.00 0.00 42.86 2.52
4012 6449 6.208204 AGCATGTAGGCAATCCATAAGATTTC 59.792 38.462 0.00 0.00 42.86 2.17
4013 6450 6.015688 CAGCATGTAGGCAATCCATAAGATTT 60.016 38.462 0.00 0.00 42.86 2.17
4014 6451 5.475909 CAGCATGTAGGCAATCCATAAGATT 59.524 40.000 0.00 0.00 46.54 2.40
4015 6452 5.008331 CAGCATGTAGGCAATCCATAAGAT 58.992 41.667 0.00 0.00 36.48 2.40
4016 6453 4.102996 TCAGCATGTAGGCAATCCATAAGA 59.897 41.667 0.00 0.00 37.40 2.10
4017 6454 4.392047 TCAGCATGTAGGCAATCCATAAG 58.608 43.478 0.00 0.00 37.40 1.73
4018 6455 4.436113 TCAGCATGTAGGCAATCCATAA 57.564 40.909 0.00 0.00 37.40 1.90
4019 6456 4.202493 ACATCAGCATGTAGGCAATCCATA 60.202 41.667 0.00 0.00 41.81 2.74
4020 6457 3.154710 CATCAGCATGTAGGCAATCCAT 58.845 45.455 0.00 0.00 37.40 3.41
4021 6458 2.092267 ACATCAGCATGTAGGCAATCCA 60.092 45.455 0.00 0.00 41.81 3.41
4022 6459 2.292569 CACATCAGCATGTAGGCAATCC 59.707 50.000 0.00 0.00 41.69 3.01
4023 6460 2.292569 CCACATCAGCATGTAGGCAATC 59.707 50.000 0.00 0.00 41.69 2.67
4024 6461 2.304092 CCACATCAGCATGTAGGCAAT 58.696 47.619 0.00 0.00 41.69 3.56
4025 6462 1.753930 CCACATCAGCATGTAGGCAA 58.246 50.000 0.00 0.00 41.69 4.52
4191 6629 3.394674 TCTGTGTAATTCTGTTCCGCA 57.605 42.857 0.00 0.00 0.00 5.69
4295 6733 6.183360 GCGCCTCTAAGTTTATTGTTGATCTT 60.183 38.462 0.00 0.00 0.00 2.40
4324 6762 5.461032 TGTGGATTTAAAAATGGAAGCGT 57.539 34.783 0.00 0.00 0.00 5.07
4339 6777 6.070021 TGTTGACAGATCTCCTTATGTGGATT 60.070 38.462 0.00 0.00 35.30 3.01
4355 6793 3.531538 AGCGAAAGAAACTGTTGACAGA 58.468 40.909 17.42 0.00 46.59 3.41
4480 6919 1.176619 TCGAAGGTGTTCTGGAGCGA 61.177 55.000 0.00 0.00 0.00 4.93
4490 6929 5.566469 TCTTGGGATTTTATTCGAAGGTGT 58.434 37.500 3.35 0.00 0.00 4.16
4494 6933 7.244192 GTGTCTTCTTGGGATTTTATTCGAAG 58.756 38.462 3.35 0.00 0.00 3.79
4581 7020 8.693542 AAGATAAATGTTGATGCTAGTTTTGC 57.306 30.769 0.00 0.00 0.00 3.68
4638 7077 3.980775 CCGCAAAAAGAAAATGATCGTGT 59.019 39.130 0.00 0.00 0.00 4.49
4662 7101 3.480012 TGGGGAATGGGGAGATTCTTAA 58.520 45.455 0.00 0.00 33.52 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.