Multiple sequence alignment - TraesCS6A01G062100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G062100 chr6A 100.000 2130 0 0 1 2130 33225491 33223362 0.000000e+00 3934.0
1 TraesCS6A01G062100 chr6A 100.000 1421 0 0 2448 3868 33223044 33221624 0.000000e+00 2625.0
2 TraesCS6A01G062100 chr6A 86.486 1036 121 7 1108 2130 45667538 45668567 0.000000e+00 1120.0
3 TraesCS6A01G062100 chr6A 87.785 483 31 13 3399 3868 45669675 45670142 1.220000e-149 540.0
4 TraesCS6A01G062100 chr6A 87.021 470 42 10 3405 3868 46294374 46293918 2.670000e-141 512.0
5 TraesCS6A01G062100 chr6D 94.534 1427 60 7 2448 3868 29195905 29197319 0.000000e+00 2187.0
6 TraesCS6A01G062100 chr6D 93.539 1331 63 10 806 2130 29194530 29195843 0.000000e+00 1960.0
7 TraesCS6A01G062100 chr6D 89.818 275 18 6 533 803 29192974 29193242 1.030000e-90 344.0
8 TraesCS6A01G062100 chr6B 93.571 1120 54 5 1007 2126 60107976 60106875 0.000000e+00 1653.0
9 TraesCS6A01G062100 chr6B 86.360 1217 139 16 927 2130 79438441 79437239 0.000000e+00 1303.0
10 TraesCS6A01G062100 chr6B 85.748 1256 147 20 892 2130 78590896 78592136 0.000000e+00 1299.0
11 TraesCS6A01G062100 chr6B 86.278 1217 141 15 927 2130 79555934 79554731 0.000000e+00 1299.0
12 TraesCS6A01G062100 chr6B 84.407 1257 163 17 891 2130 79642299 79641059 0.000000e+00 1205.0
13 TraesCS6A01G062100 chr6B 93.450 626 34 6 3149 3769 60106158 60105535 0.000000e+00 922.0
14 TraesCS6A01G062100 chr6B 90.588 680 45 11 2448 3121 60106817 60106151 0.000000e+00 883.0
15 TraesCS6A01G062100 chr6B 80.922 1085 173 20 1037 2104 61789927 61790994 0.000000e+00 826.0
16 TraesCS6A01G062100 chr6B 88.421 475 36 8 3399 3868 78593137 78593597 4.370000e-154 555.0
17 TraesCS6A01G062100 chr6B 88.671 459 34 7 3415 3868 79436222 79435777 9.450000e-151 544.0
18 TraesCS6A01G062100 chr6B 88.453 459 35 7 3415 3868 79640043 79639598 4.400000e-149 538.0
19 TraesCS6A01G062100 chr6B 88.017 459 37 7 3415 3868 79553713 79553268 9.520000e-146 527.0
20 TraesCS6A01G062100 chr6B 79.765 425 49 21 586 1002 60114020 60113625 1.370000e-69 274.0
21 TraesCS6A01G062100 chr6B 75.248 303 50 16 1177 1466 77738648 77738358 1.890000e-23 121.0
22 TraesCS6A01G062100 chrUn 86.519 1261 137 16 890 2130 112304658 112303411 0.000000e+00 1356.0
23 TraesCS6A01G062100 chrUn 85.989 1249 146 18 891 2130 27743411 27744639 0.000000e+00 1310.0
24 TraesCS6A01G062100 chrUn 89.053 475 35 6 3399 3868 27745607 27746069 1.210000e-159 573.0
25 TraesCS6A01G062100 chrUn 91.139 237 11 4 3405 3638 112302438 112302209 2.900000e-81 313.0
26 TraesCS6A01G062100 chrUn 83.333 90 10 5 3001 3086 112678838 112678926 1.150000e-10 78.7
27 TraesCS6A01G062100 chr7A 93.493 292 16 3 1 290 103376003 103375713 7.680000e-117 431.0
28 TraesCS6A01G062100 chr7A 93.471 291 17 2 1 290 543186410 543186121 7.680000e-117 431.0
29 TraesCS6A01G062100 chr7A 93.426 289 16 3 1 287 449313515 449313802 3.570000e-115 425.0
30 TraesCS6A01G062100 chr2A 93.772 289 15 3 1 287 273207009 273207296 7.680000e-117 431.0
31 TraesCS6A01G062100 chr2A 93.448 290 15 4 1 287 528147416 528147128 9.930000e-116 427.0
32 TraesCS6A01G062100 chr5D 93.103 290 17 3 1 288 355060320 355060608 4.620000e-114 422.0
33 TraesCS6A01G062100 chr3A 93.103 290 17 3 1 288 22871307 22871595 4.620000e-114 422.0
34 TraesCS6A01G062100 chr7D 92.784 291 19 2 1 290 365408683 365408394 1.660000e-113 420.0
35 TraesCS6A01G062100 chr5A 92.808 292 18 3 1 290 609216347 609216057 1.660000e-113 420.0
36 TraesCS6A01G062100 chr5B 86.154 65 7 2 2984 3048 697093851 697093789 6.930000e-08 69.4
37 TraesCS6A01G062100 chr2B 96.774 31 1 0 3289 3319 777194777 777194747 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G062100 chr6A 33221624 33225491 3867 True 3279.500000 3934 100.000000 1 3868 2 chr6A.!!$R2 3867
1 TraesCS6A01G062100 chr6A 45667538 45670142 2604 False 830.000000 1120 87.135500 1108 3868 2 chr6A.!!$F1 2760
2 TraesCS6A01G062100 chr6D 29192974 29197319 4345 False 1497.000000 2187 92.630333 533 3868 3 chr6D.!!$F1 3335
3 TraesCS6A01G062100 chr6B 60105535 60107976 2441 True 1152.666667 1653 92.536333 1007 3769 3 chr6B.!!$R3 2762
4 TraesCS6A01G062100 chr6B 78590896 78593597 2701 False 927.000000 1299 87.084500 892 3868 2 chr6B.!!$F2 2976
5 TraesCS6A01G062100 chr6B 79435777 79438441 2664 True 923.500000 1303 87.515500 927 3868 2 chr6B.!!$R4 2941
6 TraesCS6A01G062100 chr6B 79553268 79555934 2666 True 913.000000 1299 87.147500 927 3868 2 chr6B.!!$R5 2941
7 TraesCS6A01G062100 chr6B 79639598 79642299 2701 True 871.500000 1205 86.430000 891 3868 2 chr6B.!!$R6 2977
8 TraesCS6A01G062100 chr6B 61789927 61790994 1067 False 826.000000 826 80.922000 1037 2104 1 chr6B.!!$F1 1067
9 TraesCS6A01G062100 chrUn 27743411 27746069 2658 False 941.500000 1310 87.521000 891 3868 2 chrUn.!!$F2 2977
10 TraesCS6A01G062100 chrUn 112302209 112304658 2449 True 834.500000 1356 88.829000 890 3638 2 chrUn.!!$R1 2748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.032540 GCTTCCCTGTTGGTTGCTTG 59.967 55.000 0.0 0.0 34.77 4.01 F
34 35 0.034337 TGGTTGCTTGACGTAGGGTC 59.966 55.000 0.0 0.0 46.27 4.46 F
477 478 0.095935 CAGCTACAGATGCACAACGC 59.904 55.000 0.0 0.0 42.89 4.84 F
1616 2975 1.134965 CCTGCGTTTACTCCTCAGAGG 60.135 57.143 10.7 10.7 45.11 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 2907 0.304705 GTTGTCTGCCACTGTCAACG 59.695 55.000 0.00 0.00 31.24 4.10 R
1706 3068 0.394352 GAATCCCCAATCAGCACGGT 60.394 55.000 0.00 0.00 0.00 4.83 R
2014 3376 1.625884 CCCCATGGGCCCTTGTATT 59.374 57.895 30.31 4.72 35.35 1.89 R
3573 5424 3.074390 TCATGTTAGGGGATAATGGCAGG 59.926 47.826 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.429930 TCGTGGCTTCCCTGTTGG 59.570 61.111 0.00 0.00 0.00 3.77
18 19 2.113139 CGTGGCTTCCCTGTTGGT 59.887 61.111 0.00 0.00 34.77 3.67
19 20 1.528309 CGTGGCTTCCCTGTTGGTT 60.528 57.895 0.00 0.00 34.77 3.67
20 21 1.795170 CGTGGCTTCCCTGTTGGTTG 61.795 60.000 0.00 0.00 34.77 3.77
21 22 1.832167 TGGCTTCCCTGTTGGTTGC 60.832 57.895 0.00 0.00 34.77 4.17
22 23 1.531602 GGCTTCCCTGTTGGTTGCT 60.532 57.895 0.00 0.00 35.09 3.91
23 24 1.115326 GGCTTCCCTGTTGGTTGCTT 61.115 55.000 0.00 0.00 35.09 3.91
24 25 0.032540 GCTTCCCTGTTGGTTGCTTG 59.967 55.000 0.00 0.00 34.77 4.01
25 26 1.691196 CTTCCCTGTTGGTTGCTTGA 58.309 50.000 0.00 0.00 34.77 3.02
26 27 1.338020 CTTCCCTGTTGGTTGCTTGAC 59.662 52.381 0.00 0.00 34.77 3.18
27 28 0.817634 TCCCTGTTGGTTGCTTGACG 60.818 55.000 0.00 0.00 34.77 4.35
28 29 1.101049 CCCTGTTGGTTGCTTGACGT 61.101 55.000 0.00 0.00 0.00 4.34
29 30 1.588674 CCTGTTGGTTGCTTGACGTA 58.411 50.000 0.00 0.00 0.00 3.57
30 31 1.531149 CCTGTTGGTTGCTTGACGTAG 59.469 52.381 0.00 0.00 0.00 3.51
31 32 1.531149 CTGTTGGTTGCTTGACGTAGG 59.469 52.381 0.00 0.00 0.00 3.18
32 33 0.872388 GTTGGTTGCTTGACGTAGGG 59.128 55.000 0.00 0.00 0.00 3.53
33 34 0.470766 TTGGTTGCTTGACGTAGGGT 59.529 50.000 0.00 0.00 0.00 4.34
34 35 0.034337 TGGTTGCTTGACGTAGGGTC 59.966 55.000 0.00 0.00 46.27 4.46
44 45 2.673833 GACGTAGGGTCAAGTCTTGTG 58.326 52.381 12.30 0.00 45.36 3.33
45 46 1.343465 ACGTAGGGTCAAGTCTTGTGG 59.657 52.381 12.30 0.00 0.00 4.17
46 47 1.616865 CGTAGGGTCAAGTCTTGTGGA 59.383 52.381 12.30 0.00 0.00 4.02
47 48 2.233922 CGTAGGGTCAAGTCTTGTGGAT 59.766 50.000 12.30 1.30 0.00 3.41
48 49 3.676324 CGTAGGGTCAAGTCTTGTGGATC 60.676 52.174 12.30 0.00 0.00 3.36
49 50 2.625639 AGGGTCAAGTCTTGTGGATCT 58.374 47.619 12.30 2.57 0.00 2.75
50 51 2.982488 AGGGTCAAGTCTTGTGGATCTT 59.018 45.455 12.30 0.00 0.00 2.40
51 52 3.077359 GGGTCAAGTCTTGTGGATCTTG 58.923 50.000 12.30 0.00 35.94 3.02
52 53 3.496870 GGGTCAAGTCTTGTGGATCTTGT 60.497 47.826 12.30 0.00 36.00 3.16
53 54 4.137543 GGTCAAGTCTTGTGGATCTTGTT 58.862 43.478 12.30 0.00 36.00 2.83
54 55 4.214332 GGTCAAGTCTTGTGGATCTTGTTC 59.786 45.833 12.30 0.00 36.00 3.18
55 56 4.058124 TCAAGTCTTGTGGATCTTGTTCG 58.942 43.478 12.30 0.00 36.00 3.95
56 57 3.753294 AGTCTTGTGGATCTTGTTCGT 57.247 42.857 0.00 0.00 0.00 3.85
57 58 4.073293 AGTCTTGTGGATCTTGTTCGTT 57.927 40.909 0.00 0.00 0.00 3.85
58 59 4.058817 AGTCTTGTGGATCTTGTTCGTTC 58.941 43.478 0.00 0.00 0.00 3.95
59 60 3.186613 GTCTTGTGGATCTTGTTCGTTCC 59.813 47.826 0.00 0.00 0.00 3.62
60 61 2.920724 TGTGGATCTTGTTCGTTCCA 57.079 45.000 0.00 0.00 35.93 3.53
61 62 3.201353 TGTGGATCTTGTTCGTTCCAA 57.799 42.857 0.00 0.00 39.84 3.53
62 63 3.546724 TGTGGATCTTGTTCGTTCCAAA 58.453 40.909 0.00 0.00 39.84 3.28
63 64 3.948473 TGTGGATCTTGTTCGTTCCAAAA 59.052 39.130 0.00 0.00 39.84 2.44
64 65 4.399618 TGTGGATCTTGTTCGTTCCAAAAA 59.600 37.500 0.00 0.00 39.84 1.94
65 66 5.068460 TGTGGATCTTGTTCGTTCCAAAAAT 59.932 36.000 0.00 0.00 39.84 1.82
66 67 5.629435 GTGGATCTTGTTCGTTCCAAAAATC 59.371 40.000 0.00 0.00 39.84 2.17
67 68 5.300539 TGGATCTTGTTCGTTCCAAAAATCA 59.699 36.000 0.00 0.00 35.38 2.57
68 69 5.629435 GGATCTTGTTCGTTCCAAAAATCAC 59.371 40.000 0.00 0.00 0.00 3.06
69 70 5.568685 TCTTGTTCGTTCCAAAAATCACA 57.431 34.783 0.00 0.00 0.00 3.58
70 71 6.142818 TCTTGTTCGTTCCAAAAATCACAT 57.857 33.333 0.00 0.00 0.00 3.21
71 72 6.568869 TCTTGTTCGTTCCAAAAATCACATT 58.431 32.000 0.00 0.00 0.00 2.71
72 73 6.695278 TCTTGTTCGTTCCAAAAATCACATTC 59.305 34.615 0.00 0.00 0.00 2.67
73 74 5.285651 TGTTCGTTCCAAAAATCACATTCC 58.714 37.500 0.00 0.00 0.00 3.01
74 75 4.513198 TCGTTCCAAAAATCACATTCCC 57.487 40.909 0.00 0.00 0.00 3.97
75 76 3.057876 TCGTTCCAAAAATCACATTCCCG 60.058 43.478 0.00 0.00 0.00 5.14
76 77 3.057876 CGTTCCAAAAATCACATTCCCGA 60.058 43.478 0.00 0.00 0.00 5.14
77 78 4.557695 CGTTCCAAAAATCACATTCCCGAA 60.558 41.667 0.00 0.00 0.00 4.30
78 79 4.782019 TCCAAAAATCACATTCCCGAAG 57.218 40.909 0.00 0.00 0.00 3.79
97 98 4.740268 GAAGGTTTCGTTTTGTTTGGACT 58.260 39.130 0.00 0.00 0.00 3.85
98 99 4.794278 AGGTTTCGTTTTGTTTGGACTT 57.206 36.364 0.00 0.00 0.00 3.01
99 100 4.740268 AGGTTTCGTTTTGTTTGGACTTC 58.260 39.130 0.00 0.00 0.00 3.01
100 101 3.544682 GGTTTCGTTTTGTTTGGACTTCG 59.455 43.478 0.00 0.00 0.00 3.79
101 102 4.160594 GTTTCGTTTTGTTTGGACTTCGT 58.839 39.130 0.00 0.00 0.00 3.85
102 103 4.422546 TTCGTTTTGTTTGGACTTCGTT 57.577 36.364 0.00 0.00 0.00 3.85
103 104 4.422546 TCGTTTTGTTTGGACTTCGTTT 57.577 36.364 0.00 0.00 0.00 3.60
104 105 4.159857 TCGTTTTGTTTGGACTTCGTTTG 58.840 39.130 0.00 0.00 0.00 2.93
105 106 4.083431 TCGTTTTGTTTGGACTTCGTTTGA 60.083 37.500 0.00 0.00 0.00 2.69
106 107 4.796312 CGTTTTGTTTGGACTTCGTTTGAT 59.204 37.500 0.00 0.00 0.00 2.57
107 108 5.966503 CGTTTTGTTTGGACTTCGTTTGATA 59.033 36.000 0.00 0.00 0.00 2.15
108 109 6.635239 CGTTTTGTTTGGACTTCGTTTGATAT 59.365 34.615 0.00 0.00 0.00 1.63
109 110 7.166804 CGTTTTGTTTGGACTTCGTTTGATATT 59.833 33.333 0.00 0.00 0.00 1.28
110 111 8.476925 GTTTTGTTTGGACTTCGTTTGATATTC 58.523 33.333 0.00 0.00 0.00 1.75
111 112 6.249035 TGTTTGGACTTCGTTTGATATTCC 57.751 37.500 0.00 0.00 0.00 3.01
112 113 6.001460 TGTTTGGACTTCGTTTGATATTCCT 58.999 36.000 0.00 0.00 0.00 3.36
113 114 6.488683 TGTTTGGACTTCGTTTGATATTCCTT 59.511 34.615 0.00 0.00 0.00 3.36
114 115 7.013846 TGTTTGGACTTCGTTTGATATTCCTTT 59.986 33.333 0.00 0.00 0.00 3.11
115 116 7.519032 TTGGACTTCGTTTGATATTCCTTTT 57.481 32.000 0.00 0.00 0.00 2.27
116 117 7.519032 TGGACTTCGTTTGATATTCCTTTTT 57.481 32.000 0.00 0.00 0.00 1.94
117 118 7.590279 TGGACTTCGTTTGATATTCCTTTTTC 58.410 34.615 0.00 0.00 0.00 2.29
118 119 7.447238 TGGACTTCGTTTGATATTCCTTTTTCT 59.553 33.333 0.00 0.00 0.00 2.52
119 120 8.297426 GGACTTCGTTTGATATTCCTTTTTCTT 58.703 33.333 0.00 0.00 0.00 2.52
120 121 9.678941 GACTTCGTTTGATATTCCTTTTTCTTT 57.321 29.630 0.00 0.00 0.00 2.52
121 122 9.463443 ACTTCGTTTGATATTCCTTTTTCTTTG 57.537 29.630 0.00 0.00 0.00 2.77
122 123 9.677567 CTTCGTTTGATATTCCTTTTTCTTTGA 57.322 29.630 0.00 0.00 0.00 2.69
163 164 2.363406 AGCAATTCTGGGCTGGGC 60.363 61.111 0.00 0.00 39.30 5.36
173 174 2.915869 GGCTGGGCCTCCGATTAA 59.084 61.111 4.53 0.00 46.69 1.40
174 175 1.456287 GGCTGGGCCTCCGATTAAT 59.544 57.895 4.53 0.00 46.69 1.40
175 176 0.690762 GGCTGGGCCTCCGATTAATA 59.309 55.000 4.53 0.00 46.69 0.98
176 177 1.339151 GGCTGGGCCTCCGATTAATAG 60.339 57.143 4.53 0.00 46.69 1.73
177 178 1.339151 GCTGGGCCTCCGATTAATAGG 60.339 57.143 4.53 8.23 35.24 2.57
178 179 1.978580 CTGGGCCTCCGATTAATAGGT 59.021 52.381 13.58 0.00 35.24 3.08
179 180 2.372172 CTGGGCCTCCGATTAATAGGTT 59.628 50.000 13.58 0.00 35.24 3.50
180 181 3.581332 CTGGGCCTCCGATTAATAGGTTA 59.419 47.826 13.58 0.00 35.24 2.85
181 182 3.581332 TGGGCCTCCGATTAATAGGTTAG 59.419 47.826 13.58 5.60 35.24 2.34
182 183 3.581770 GGGCCTCCGATTAATAGGTTAGT 59.418 47.826 13.58 0.00 32.67 2.24
183 184 4.322574 GGGCCTCCGATTAATAGGTTAGTC 60.323 50.000 13.58 6.06 32.67 2.59
184 185 4.322574 GGCCTCCGATTAATAGGTTAGTCC 60.323 50.000 13.58 1.76 32.67 3.85
185 186 4.282703 GCCTCCGATTAATAGGTTAGTCCA 59.717 45.833 13.58 0.00 39.02 4.02
186 187 5.221581 GCCTCCGATTAATAGGTTAGTCCAA 60.222 44.000 13.58 0.00 39.02 3.53
187 188 6.687139 GCCTCCGATTAATAGGTTAGTCCAAA 60.687 42.308 13.58 0.00 39.02 3.28
188 189 7.277396 CCTCCGATTAATAGGTTAGTCCAAAA 58.723 38.462 13.58 0.00 39.02 2.44
189 190 7.771826 CCTCCGATTAATAGGTTAGTCCAAAAA 59.228 37.037 13.58 0.00 39.02 1.94
190 191 9.338622 CTCCGATTAATAGGTTAGTCCAAAAAT 57.661 33.333 13.58 0.00 39.02 1.82
225 226 9.297037 AGTATGTAATAAAGCCCAATAATGTCC 57.703 33.333 0.00 0.00 0.00 4.02
226 227 9.073475 GTATGTAATAAAGCCCAATAATGTCCA 57.927 33.333 0.00 0.00 0.00 4.02
227 228 7.962995 TGTAATAAAGCCCAATAATGTCCAA 57.037 32.000 0.00 0.00 0.00 3.53
228 229 8.367660 TGTAATAAAGCCCAATAATGTCCAAA 57.632 30.769 0.00 0.00 0.00 3.28
229 230 8.816894 TGTAATAAAGCCCAATAATGTCCAAAA 58.183 29.630 0.00 0.00 0.00 2.44
230 231 9.093970 GTAATAAAGCCCAATAATGTCCAAAAC 57.906 33.333 0.00 0.00 0.00 2.43
231 232 5.559148 AAAGCCCAATAATGTCCAAAACA 57.441 34.783 0.00 0.00 43.51 2.83
232 233 4.806640 AGCCCAATAATGTCCAAAACAG 57.193 40.909 0.00 0.00 42.37 3.16
233 234 4.159557 AGCCCAATAATGTCCAAAACAGT 58.840 39.130 0.00 0.00 42.37 3.55
234 235 5.329399 AGCCCAATAATGTCCAAAACAGTA 58.671 37.500 0.00 0.00 42.17 2.74
235 236 5.418840 AGCCCAATAATGTCCAAAACAGTAG 59.581 40.000 0.00 0.00 41.35 2.57
236 237 5.417580 GCCCAATAATGTCCAAAACAGTAGA 59.582 40.000 0.00 0.00 41.35 2.59
237 238 6.096846 GCCCAATAATGTCCAAAACAGTAGAT 59.903 38.462 0.00 0.00 41.35 1.98
238 239 7.284489 GCCCAATAATGTCCAAAACAGTAGATA 59.716 37.037 0.00 0.00 41.35 1.98
239 240 9.184523 CCCAATAATGTCCAAAACAGTAGATAA 57.815 33.333 0.00 0.00 41.35 1.75
249 250 9.725019 TCCAAAACAGTAGATAATATAGCATGG 57.275 33.333 0.00 0.00 0.00 3.66
250 251 9.725019 CCAAAACAGTAGATAATATAGCATGGA 57.275 33.333 0.00 0.00 0.00 3.41
252 253 9.442047 AAAACAGTAGATAATATAGCATGGAGC 57.558 33.333 0.00 0.00 46.19 4.70
273 274 9.337396 TGGAGCAATCAAAAATTATAGATACGT 57.663 29.630 0.00 0.00 0.00 3.57
290 291 2.279582 CGTTGAAGACGTATCAGGCT 57.720 50.000 4.00 0.00 46.49 4.58
291 292 3.416119 CGTTGAAGACGTATCAGGCTA 57.584 47.619 4.00 0.00 46.49 3.93
292 293 3.364062 CGTTGAAGACGTATCAGGCTAG 58.636 50.000 4.00 0.00 46.49 3.42
293 294 3.181499 CGTTGAAGACGTATCAGGCTAGT 60.181 47.826 4.00 0.00 46.49 2.57
294 295 4.352887 GTTGAAGACGTATCAGGCTAGTC 58.647 47.826 4.00 0.00 0.00 2.59
295 296 3.617284 TGAAGACGTATCAGGCTAGTCA 58.383 45.455 0.00 0.00 34.56 3.41
296 297 3.628032 TGAAGACGTATCAGGCTAGTCAG 59.372 47.826 0.00 0.00 34.56 3.51
297 298 3.284793 AGACGTATCAGGCTAGTCAGT 57.715 47.619 0.00 0.00 34.56 3.41
298 299 2.946329 AGACGTATCAGGCTAGTCAGTG 59.054 50.000 0.00 0.00 34.56 3.66
299 300 2.943690 GACGTATCAGGCTAGTCAGTGA 59.056 50.000 0.00 0.00 32.57 3.41
300 301 3.353557 ACGTATCAGGCTAGTCAGTGAA 58.646 45.455 0.00 0.00 0.00 3.18
301 302 3.378742 ACGTATCAGGCTAGTCAGTGAAG 59.621 47.826 0.00 0.00 0.00 3.02
302 303 3.243234 CGTATCAGGCTAGTCAGTGAAGG 60.243 52.174 0.00 0.00 0.00 3.46
303 304 2.604912 TCAGGCTAGTCAGTGAAGGA 57.395 50.000 0.00 0.00 0.00 3.36
304 305 2.451490 TCAGGCTAGTCAGTGAAGGAG 58.549 52.381 0.00 0.00 0.00 3.69
305 306 2.175202 CAGGCTAGTCAGTGAAGGAGT 58.825 52.381 0.00 0.00 0.00 3.85
306 307 2.094286 CAGGCTAGTCAGTGAAGGAGTG 60.094 54.545 0.00 0.00 0.00 3.51
307 308 2.171840 GGCTAGTCAGTGAAGGAGTGA 58.828 52.381 0.00 0.00 0.00 3.41
308 309 2.165437 GGCTAGTCAGTGAAGGAGTGAG 59.835 54.545 0.00 0.00 34.49 3.51
309 310 3.085533 GCTAGTCAGTGAAGGAGTGAGA 58.914 50.000 0.00 0.00 34.49 3.27
310 311 3.119637 GCTAGTCAGTGAAGGAGTGAGAC 60.120 52.174 0.00 0.00 34.49 3.36
311 312 3.237268 AGTCAGTGAAGGAGTGAGACT 57.763 47.619 0.00 0.00 34.49 3.24
312 313 3.153919 AGTCAGTGAAGGAGTGAGACTC 58.846 50.000 0.00 0.00 44.32 3.36
313 314 2.887783 GTCAGTGAAGGAGTGAGACTCA 59.112 50.000 0.00 0.00 46.79 3.41
314 315 3.057596 GTCAGTGAAGGAGTGAGACTCAG 60.058 52.174 5.10 0.00 46.79 3.35
315 316 1.892474 AGTGAAGGAGTGAGACTCAGC 59.108 52.381 5.10 0.89 46.79 4.26
316 317 1.067213 GTGAAGGAGTGAGACTCAGCC 60.067 57.143 5.10 10.58 46.79 4.85
317 318 1.261480 GAAGGAGTGAGACTCAGCCA 58.739 55.000 20.71 0.00 46.79 4.75
318 319 1.830477 GAAGGAGTGAGACTCAGCCAT 59.170 52.381 20.71 12.47 46.79 4.40
319 320 1.484038 AGGAGTGAGACTCAGCCATC 58.516 55.000 20.71 11.00 46.79 3.51
320 321 0.102120 GGAGTGAGACTCAGCCATCG 59.898 60.000 15.99 0.00 46.79 3.84
321 322 1.098869 GAGTGAGACTCAGCCATCGA 58.901 55.000 5.10 0.00 44.45 3.59
322 323 1.474478 GAGTGAGACTCAGCCATCGAA 59.526 52.381 5.10 0.00 44.45 3.71
323 324 1.476085 AGTGAGACTCAGCCATCGAAG 59.524 52.381 5.10 0.00 0.00 3.79
324 325 1.474478 GTGAGACTCAGCCATCGAAGA 59.526 52.381 5.10 0.00 45.75 2.87
325 326 1.747924 TGAGACTCAGCCATCGAAGAG 59.252 52.381 0.00 0.00 43.63 2.85
326 327 2.020720 GAGACTCAGCCATCGAAGAGA 58.979 52.381 0.00 0.00 43.63 3.10
327 328 2.425312 GAGACTCAGCCATCGAAGAGAA 59.575 50.000 0.00 0.00 43.63 2.87
328 329 2.426738 AGACTCAGCCATCGAAGAGAAG 59.573 50.000 0.00 0.00 43.63 2.85
329 330 1.480137 ACTCAGCCATCGAAGAGAAGG 59.520 52.381 0.00 0.00 43.63 3.46
330 331 1.753649 CTCAGCCATCGAAGAGAAGGA 59.246 52.381 0.00 0.00 43.63 3.36
331 332 1.478510 TCAGCCATCGAAGAGAAGGAC 59.521 52.381 0.00 0.00 43.63 3.85
332 333 0.827368 AGCCATCGAAGAGAAGGACC 59.173 55.000 0.00 0.00 43.63 4.46
333 334 0.537188 GCCATCGAAGAGAAGGACCA 59.463 55.000 0.00 0.00 43.63 4.02
334 335 1.472376 GCCATCGAAGAGAAGGACCAG 60.472 57.143 0.00 0.00 43.63 4.00
335 336 2.103373 CCATCGAAGAGAAGGACCAGA 58.897 52.381 0.00 0.00 43.63 3.86
336 337 2.497675 CCATCGAAGAGAAGGACCAGAA 59.502 50.000 0.00 0.00 43.63 3.02
337 338 3.430098 CCATCGAAGAGAAGGACCAGAAG 60.430 52.174 0.00 0.00 43.63 2.85
338 339 1.546476 TCGAAGAGAAGGACCAGAAGC 59.454 52.381 0.00 0.00 0.00 3.86
339 340 1.734047 CGAAGAGAAGGACCAGAAGCG 60.734 57.143 0.00 0.00 0.00 4.68
340 341 1.546476 GAAGAGAAGGACCAGAAGCGA 59.454 52.381 0.00 0.00 0.00 4.93
341 342 1.181786 AGAGAAGGACCAGAAGCGAG 58.818 55.000 0.00 0.00 0.00 5.03
342 343 0.174617 GAGAAGGACCAGAAGCGAGG 59.825 60.000 0.00 0.00 0.00 4.63
343 344 0.251832 AGAAGGACCAGAAGCGAGGA 60.252 55.000 0.00 0.00 0.00 3.71
344 345 0.827368 GAAGGACCAGAAGCGAGGAT 59.173 55.000 0.00 0.00 0.00 3.24
345 346 2.032620 GAAGGACCAGAAGCGAGGATA 58.967 52.381 0.00 0.00 0.00 2.59
346 347 1.698506 AGGACCAGAAGCGAGGATAG 58.301 55.000 0.00 0.00 0.00 2.08
347 348 1.215673 AGGACCAGAAGCGAGGATAGA 59.784 52.381 0.00 0.00 0.00 1.98
348 349 2.158385 AGGACCAGAAGCGAGGATAGAT 60.158 50.000 0.00 0.00 0.00 1.98
349 350 3.074687 AGGACCAGAAGCGAGGATAGATA 59.925 47.826 0.00 0.00 0.00 1.98
350 351 3.827302 GGACCAGAAGCGAGGATAGATAA 59.173 47.826 0.00 0.00 0.00 1.75
351 352 4.321378 GGACCAGAAGCGAGGATAGATAAC 60.321 50.000 0.00 0.00 0.00 1.89
352 353 4.475345 ACCAGAAGCGAGGATAGATAACT 58.525 43.478 0.00 0.00 0.00 2.24
353 354 4.521256 ACCAGAAGCGAGGATAGATAACTC 59.479 45.833 0.00 0.00 0.00 3.01
354 355 4.520874 CCAGAAGCGAGGATAGATAACTCA 59.479 45.833 0.00 0.00 0.00 3.41
355 356 5.184864 CCAGAAGCGAGGATAGATAACTCAT 59.815 44.000 0.00 0.00 0.00 2.90
356 357 6.375736 CCAGAAGCGAGGATAGATAACTCATA 59.624 42.308 0.00 0.00 0.00 2.15
357 358 7.068103 CCAGAAGCGAGGATAGATAACTCATAT 59.932 40.741 0.00 0.00 0.00 1.78
358 359 8.128582 CAGAAGCGAGGATAGATAACTCATATC 58.871 40.741 0.00 0.00 40.71 1.63
359 360 6.952773 AGCGAGGATAGATAACTCATATCC 57.047 41.667 2.84 2.84 43.55 2.59
360 361 6.427441 AGCGAGGATAGATAACTCATATCCA 58.573 40.000 11.84 0.00 44.98 3.41
361 362 6.892456 AGCGAGGATAGATAACTCATATCCAA 59.108 38.462 11.84 0.00 44.98 3.53
362 363 7.563188 AGCGAGGATAGATAACTCATATCCAAT 59.437 37.037 11.84 0.00 44.98 3.16
363 364 8.851145 GCGAGGATAGATAACTCATATCCAATA 58.149 37.037 11.84 0.00 44.98 1.90
375 376 9.998106 AACTCATATCCAATACCATGTAAGTAC 57.002 33.333 0.00 0.00 0.00 2.73
376 377 8.594550 ACTCATATCCAATACCATGTAAGTACC 58.405 37.037 0.00 0.00 0.00 3.34
377 378 8.499288 TCATATCCAATACCATGTAAGTACCA 57.501 34.615 0.00 0.00 0.00 3.25
378 379 8.593679 TCATATCCAATACCATGTAAGTACCAG 58.406 37.037 0.00 0.00 0.00 4.00
379 380 8.593679 CATATCCAATACCATGTAAGTACCAGA 58.406 37.037 0.00 0.00 0.00 3.86
380 381 6.877668 TCCAATACCATGTAAGTACCAGAA 57.122 37.500 0.00 0.00 0.00 3.02
381 382 6.884832 TCCAATACCATGTAAGTACCAGAAG 58.115 40.000 0.00 0.00 0.00 2.85
382 383 5.527582 CCAATACCATGTAAGTACCAGAAGC 59.472 44.000 0.00 0.00 0.00 3.86
383 384 5.950544 ATACCATGTAAGTACCAGAAGCA 57.049 39.130 0.00 0.00 0.00 3.91
384 385 4.634012 ACCATGTAAGTACCAGAAGCAA 57.366 40.909 0.00 0.00 0.00 3.91
385 386 4.579869 ACCATGTAAGTACCAGAAGCAAG 58.420 43.478 0.00 0.00 0.00 4.01
386 387 4.286032 ACCATGTAAGTACCAGAAGCAAGA 59.714 41.667 0.00 0.00 0.00 3.02
387 388 5.221843 ACCATGTAAGTACCAGAAGCAAGAA 60.222 40.000 0.00 0.00 0.00 2.52
388 389 5.705441 CCATGTAAGTACCAGAAGCAAGAAA 59.295 40.000 0.00 0.00 0.00 2.52
389 390 6.206634 CCATGTAAGTACCAGAAGCAAGAAAA 59.793 38.462 0.00 0.00 0.00 2.29
390 391 7.094205 CCATGTAAGTACCAGAAGCAAGAAAAT 60.094 37.037 0.00 0.00 0.00 1.82
391 392 7.202016 TGTAAGTACCAGAAGCAAGAAAATG 57.798 36.000 0.00 0.00 0.00 2.32
392 393 6.995686 TGTAAGTACCAGAAGCAAGAAAATGA 59.004 34.615 0.00 0.00 0.00 2.57
393 394 7.665559 TGTAAGTACCAGAAGCAAGAAAATGAT 59.334 33.333 0.00 0.00 0.00 2.45
394 395 7.530426 AAGTACCAGAAGCAAGAAAATGATT 57.470 32.000 0.00 0.00 0.00 2.57
395 396 8.635765 AAGTACCAGAAGCAAGAAAATGATTA 57.364 30.769 0.00 0.00 0.00 1.75
396 397 8.814038 AGTACCAGAAGCAAGAAAATGATTAT 57.186 30.769 0.00 0.00 0.00 1.28
397 398 9.905713 AGTACCAGAAGCAAGAAAATGATTATA 57.094 29.630 0.00 0.00 0.00 0.98
400 401 9.412460 ACCAGAAGCAAGAAAATGATTATATCA 57.588 29.630 0.00 0.00 44.55 2.15
424 425 9.833917 TCAAATGTACATATATACGGGTTTCAA 57.166 29.630 9.21 0.00 0.00 2.69
426 427 8.842358 AATGTACATATATACGGGTTTCAAGG 57.158 34.615 9.21 0.00 0.00 3.61
427 428 6.225318 TGTACATATATACGGGTTTCAAGGC 58.775 40.000 0.00 0.00 0.00 4.35
428 429 5.298989 ACATATATACGGGTTTCAAGGCA 57.701 39.130 0.00 0.00 0.00 4.75
429 430 5.305585 ACATATATACGGGTTTCAAGGCAG 58.694 41.667 0.00 0.00 0.00 4.85
430 431 2.702592 TATACGGGTTTCAAGGCAGG 57.297 50.000 0.00 0.00 0.00 4.85
431 432 0.679960 ATACGGGTTTCAAGGCAGGC 60.680 55.000 0.00 0.00 0.00 4.85
432 433 2.058125 TACGGGTTTCAAGGCAGGCA 62.058 55.000 0.00 0.00 0.00 4.75
433 434 2.199652 CGGGTTTCAAGGCAGGCAA 61.200 57.895 0.00 0.00 0.00 4.52
434 435 1.367471 GGGTTTCAAGGCAGGCAAC 59.633 57.895 0.00 0.00 0.00 4.17
449 450 1.670811 GGCAACTCCGTAATGACATGG 59.329 52.381 0.00 0.00 0.00 3.66
450 451 1.064060 GCAACTCCGTAATGACATGGC 59.936 52.381 0.00 0.00 0.00 4.40
451 452 2.632377 CAACTCCGTAATGACATGGCT 58.368 47.619 0.00 0.00 0.00 4.75
452 453 3.792401 CAACTCCGTAATGACATGGCTA 58.208 45.455 0.00 0.00 0.00 3.93
453 454 4.188462 CAACTCCGTAATGACATGGCTAA 58.812 43.478 0.00 0.00 0.00 3.09
454 455 4.481368 ACTCCGTAATGACATGGCTAAA 57.519 40.909 0.00 0.00 0.00 1.85
455 456 4.442706 ACTCCGTAATGACATGGCTAAAG 58.557 43.478 0.00 0.00 0.00 1.85
456 457 4.161565 ACTCCGTAATGACATGGCTAAAGA 59.838 41.667 0.00 0.00 0.00 2.52
457 458 4.439057 TCCGTAATGACATGGCTAAAGAC 58.561 43.478 0.00 0.00 0.00 3.01
458 459 3.560068 CCGTAATGACATGGCTAAAGACC 59.440 47.826 0.00 0.00 0.00 3.85
459 460 4.188462 CGTAATGACATGGCTAAAGACCA 58.812 43.478 0.00 0.00 42.61 4.02
460 461 4.271049 CGTAATGACATGGCTAAAGACCAG 59.729 45.833 0.00 0.00 41.46 4.00
461 462 2.113860 TGACATGGCTAAAGACCAGC 57.886 50.000 0.00 0.00 41.46 4.85
462 463 1.630369 TGACATGGCTAAAGACCAGCT 59.370 47.619 0.00 0.00 41.46 4.24
463 464 2.837591 TGACATGGCTAAAGACCAGCTA 59.162 45.455 0.00 0.00 41.46 3.32
464 465 3.198872 GACATGGCTAAAGACCAGCTAC 58.801 50.000 0.00 0.00 41.46 3.58
465 466 2.571653 ACATGGCTAAAGACCAGCTACA 59.428 45.455 0.00 0.00 41.46 2.74
466 467 3.201290 CATGGCTAAAGACCAGCTACAG 58.799 50.000 0.00 0.00 41.46 2.74
467 468 2.536066 TGGCTAAAGACCAGCTACAGA 58.464 47.619 0.00 0.00 39.09 3.41
468 469 3.107601 TGGCTAAAGACCAGCTACAGAT 58.892 45.455 0.00 0.00 39.09 2.90
469 470 3.118629 TGGCTAAAGACCAGCTACAGATG 60.119 47.826 0.00 0.00 39.09 2.90
470 471 2.869192 GCTAAAGACCAGCTACAGATGC 59.131 50.000 0.00 0.00 36.07 3.91
471 472 3.679917 GCTAAAGACCAGCTACAGATGCA 60.680 47.826 0.00 0.00 36.07 3.96
472 473 2.393271 AAGACCAGCTACAGATGCAC 57.607 50.000 0.00 0.00 0.00 4.57
473 474 1.269958 AGACCAGCTACAGATGCACA 58.730 50.000 0.00 0.00 0.00 4.57
474 475 1.625315 AGACCAGCTACAGATGCACAA 59.375 47.619 0.00 0.00 0.00 3.33
475 476 1.734465 GACCAGCTACAGATGCACAAC 59.266 52.381 0.00 0.00 0.00 3.32
476 477 0.723414 CCAGCTACAGATGCACAACG 59.277 55.000 0.00 0.00 0.00 4.10
477 478 0.095935 CAGCTACAGATGCACAACGC 59.904 55.000 0.00 0.00 42.89 4.84
488 489 2.405892 GCACAACGCAAAGTCATCTT 57.594 45.000 0.00 0.00 41.79 2.40
489 490 2.731217 GCACAACGCAAAGTCATCTTT 58.269 42.857 0.00 0.00 43.66 2.52
490 491 3.115554 GCACAACGCAAAGTCATCTTTT 58.884 40.909 0.00 0.00 41.31 2.27
491 492 3.551485 GCACAACGCAAAGTCATCTTTTT 59.449 39.130 0.00 0.00 41.31 1.94
546 547 4.042809 TGGGAAAATCCAGTTAGCAGAAGA 59.957 41.667 0.00 0.00 38.64 2.87
548 549 5.249420 GGAAAATCCAGTTAGCAGAAGAGT 58.751 41.667 0.00 0.00 36.28 3.24
549 550 5.707764 GGAAAATCCAGTTAGCAGAAGAGTT 59.292 40.000 0.00 0.00 36.28 3.01
550 551 6.879458 GGAAAATCCAGTTAGCAGAAGAGTTA 59.121 38.462 0.00 0.00 36.28 2.24
551 552 7.065204 GGAAAATCCAGTTAGCAGAAGAGTTAG 59.935 40.741 0.00 0.00 36.28 2.34
554 555 3.929610 CCAGTTAGCAGAAGAGTTAGCAC 59.070 47.826 0.00 0.00 0.00 4.40
555 556 4.560128 CAGTTAGCAGAAGAGTTAGCACA 58.440 43.478 0.00 0.00 0.00 4.57
556 557 5.174395 CAGTTAGCAGAAGAGTTAGCACAT 58.826 41.667 0.00 0.00 0.00 3.21
557 558 6.333416 CAGTTAGCAGAAGAGTTAGCACATA 58.667 40.000 0.00 0.00 0.00 2.29
558 559 6.475076 CAGTTAGCAGAAGAGTTAGCACATAG 59.525 42.308 0.00 0.00 0.00 2.23
570 571 9.372369 AGAGTTAGCACATAGTATCTTTTTGTC 57.628 33.333 0.00 0.00 0.00 3.18
578 579 7.750458 CACATAGTATCTTTTTGTCGCAAACAT 59.250 33.333 4.80 2.00 37.82 2.71
616 617 5.881447 TGACGCTAAAACAGAGATACTCTC 58.119 41.667 0.00 0.00 43.70 3.20
653 654 9.914131 GGAAATCTAAGCAAGTCAAAACTTATT 57.086 29.630 0.00 0.00 43.99 1.40
684 685 8.874156 ACAATATAGAGAGACAGGATATTGCAA 58.126 33.333 0.00 0.00 41.22 4.08
698 699 8.975439 CAGGATATTGCAAAGCTAAAATGATTC 58.025 33.333 1.71 0.00 0.00 2.52
730 731 4.048504 GTGCTCAATTGGCGTTTAAACTT 58.951 39.130 16.01 0.68 0.00 2.66
731 732 4.506288 GTGCTCAATTGGCGTTTAAACTTT 59.494 37.500 16.01 0.32 0.00 2.66
732 733 5.006261 GTGCTCAATTGGCGTTTAAACTTTT 59.994 36.000 16.01 0.63 0.00 2.27
762 763 4.980590 TCGATGAAAATTGTATGCACCAC 58.019 39.130 0.00 0.00 0.00 4.16
765 766 6.037062 TCGATGAAAATTGTATGCACCACTAG 59.963 38.462 0.00 0.00 0.00 2.57
944 2237 1.903877 CTGGGCCGATCCACTTCAGT 61.904 60.000 0.00 0.00 36.21 3.41
975 2274 2.741211 CTGCTGCTGCTGCTTCGA 60.741 61.111 27.67 10.41 40.48 3.71
976 2275 3.024782 CTGCTGCTGCTGCTTCGAC 62.025 63.158 27.67 3.30 40.48 4.20
977 2276 2.741598 GCTGCTGCTGCTTCGACT 60.742 61.111 22.10 0.00 40.48 4.18
978 2277 2.738695 GCTGCTGCTGCTTCGACTC 61.739 63.158 22.10 0.00 40.48 3.36
979 2278 2.047844 TGCTGCTGCTTCGACTCC 60.048 61.111 17.00 0.00 40.48 3.85
980 2279 2.047844 GCTGCTGCTTCGACTCCA 60.048 61.111 8.53 0.00 36.03 3.86
1117 2451 4.488911 ATCCTCCTCCGCCTGCCT 62.489 66.667 0.00 0.00 0.00 4.75
1277 2618 1.799933 AGATCTGCCCTTCCTACCTG 58.200 55.000 0.00 0.00 0.00 4.00
1388 2729 1.226974 CATGGCCTGGTACTCGTCG 60.227 63.158 3.32 0.00 0.00 5.12
1431 2778 3.327404 GGTGTGGGACCCCGTCAT 61.327 66.667 8.45 0.00 39.10 3.06
1525 2884 2.386660 GCTTCGTGCTGCTGGAGAC 61.387 63.158 0.00 0.00 38.95 3.36
1526 2885 2.049156 TTCGTGCTGCTGGAGACG 60.049 61.111 0.00 7.51 0.00 4.18
1609 2968 1.502190 GCTTGCCTGCGTTTACTCC 59.498 57.895 0.00 0.00 0.00 3.85
1616 2975 1.134965 CCTGCGTTTACTCCTCAGAGG 60.135 57.143 10.70 10.70 45.11 3.69
1658 3017 2.999355 GTCTCAACACAGCTTCCATCTC 59.001 50.000 0.00 0.00 0.00 2.75
1706 3068 5.244626 ACCTTCGTTTCTACTTACAAGCCTA 59.755 40.000 0.00 0.00 0.00 3.93
1708 3070 5.064441 TCGTTTCTACTTACAAGCCTACC 57.936 43.478 0.00 0.00 0.00 3.18
1828 3190 2.615912 GCCAGTGCATATCCTTGAAGAC 59.384 50.000 0.00 0.00 37.47 3.01
1895 3257 2.234168 GGTTTACTCCTCCAGACAGACC 59.766 54.545 0.00 0.00 0.00 3.85
1996 3358 5.062809 GGACAAGCTACTTTCTCTGAATTCG 59.937 44.000 0.04 0.00 0.00 3.34
2014 3376 7.962441 TGAATTCGGAGGAGAATGACATAATA 58.038 34.615 0.04 0.00 40.39 0.98
2053 3415 4.701171 GGGGAAAATAATGTGGTGTTCGTA 59.299 41.667 0.00 0.00 0.00 3.43
2546 3989 9.155975 AGTTAGCAATTTCAAGTAGTGTCATAG 57.844 33.333 0.00 0.00 0.00 2.23
3131 4725 9.488762 TCATCTACCATTTTTAGAAGAGTCCTA 57.511 33.333 0.00 0.00 0.00 2.94
3147 4741 4.337145 AGTCCTACTGAGAGTACCAAGTG 58.663 47.826 0.00 0.00 0.00 3.16
3208 4803 8.862325 TTCACTAATCTGCTTGGATTTCTTAA 57.138 30.769 5.72 0.00 37.20 1.85
3249 4845 5.794726 TTTTCTGATATGGCATGGAATGG 57.205 39.130 10.98 0.00 46.86 3.16
3330 4926 9.288576 TGTTCTTCATTTCTACAACATTCATCT 57.711 29.630 0.00 0.00 0.00 2.90
3544 5394 4.319139 TTCTCAGCATATCTCTCAGTGC 57.681 45.455 0.00 0.00 37.84 4.40
3573 5424 7.874940 TCTAATTTGCATATGTAATCTGCCAC 58.125 34.615 7.08 0.00 44.88 5.01
3632 5483 7.324375 CCAAACTATATGTATCAATGCTTTGCG 59.676 37.037 7.44 0.00 32.61 4.85
3744 5598 2.298411 AACACTGCTTTTGCCACAAG 57.702 45.000 0.00 0.00 46.87 3.16
3825 5679 5.220284 GCTTTTGTTGTTGTGAAGAAAGAGC 60.220 40.000 0.00 0.00 0.00 4.09
3826 5680 3.673746 TGTTGTTGTGAAGAAAGAGCG 57.326 42.857 0.00 0.00 0.00 5.03
3827 5681 2.354510 TGTTGTTGTGAAGAAAGAGCGG 59.645 45.455 0.00 0.00 0.00 5.52
3837 5691 4.099419 TGAAGAAAGAGCGGTGCATCTATA 59.901 41.667 0.00 0.00 0.00 1.31
3840 5694 5.615289 AGAAAGAGCGGTGCATCTATATTT 58.385 37.500 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.990160 AACCAACAGGGAAGCCACGA 61.990 55.000 0.00 0.00 41.15 4.35
1 2 1.528309 AACCAACAGGGAAGCCACG 60.528 57.895 0.00 0.00 41.15 4.94
2 3 2.041153 CAACCAACAGGGAAGCCAC 58.959 57.895 0.00 0.00 41.15 5.01
3 4 1.832167 GCAACCAACAGGGAAGCCA 60.832 57.895 0.00 0.00 41.15 4.75
4 5 1.115326 AAGCAACCAACAGGGAAGCC 61.115 55.000 0.00 0.00 39.62 4.35
5 6 0.032540 CAAGCAACCAACAGGGAAGC 59.967 55.000 0.00 0.00 41.15 3.86
6 7 1.338020 GTCAAGCAACCAACAGGGAAG 59.662 52.381 0.00 0.00 41.15 3.46
7 8 1.398692 GTCAAGCAACCAACAGGGAA 58.601 50.000 0.00 0.00 41.15 3.97
8 9 0.817634 CGTCAAGCAACCAACAGGGA 60.818 55.000 0.00 0.00 41.15 4.20
9 10 1.101049 ACGTCAAGCAACCAACAGGG 61.101 55.000 0.00 0.00 44.81 4.45
10 11 1.531149 CTACGTCAAGCAACCAACAGG 59.469 52.381 0.00 0.00 0.00 4.00
11 12 1.531149 CCTACGTCAAGCAACCAACAG 59.469 52.381 0.00 0.00 0.00 3.16
12 13 1.588674 CCTACGTCAAGCAACCAACA 58.411 50.000 0.00 0.00 0.00 3.33
13 14 0.872388 CCCTACGTCAAGCAACCAAC 59.128 55.000 0.00 0.00 0.00 3.77
14 15 0.470766 ACCCTACGTCAAGCAACCAA 59.529 50.000 0.00 0.00 0.00 3.67
15 16 0.034337 GACCCTACGTCAAGCAACCA 59.966 55.000 0.00 0.00 41.54 3.67
16 17 2.836944 GACCCTACGTCAAGCAACC 58.163 57.895 0.00 0.00 41.54 3.77
24 25 2.609737 CCACAAGACTTGACCCTACGTC 60.610 54.545 21.95 0.00 42.33 4.34
25 26 1.343465 CCACAAGACTTGACCCTACGT 59.657 52.381 21.95 0.00 0.00 3.57
26 27 1.616865 TCCACAAGACTTGACCCTACG 59.383 52.381 21.95 1.33 0.00 3.51
27 28 3.515901 AGATCCACAAGACTTGACCCTAC 59.484 47.826 21.95 8.19 0.00 3.18
28 29 3.791320 AGATCCACAAGACTTGACCCTA 58.209 45.455 21.95 3.03 0.00 3.53
29 30 2.625639 AGATCCACAAGACTTGACCCT 58.374 47.619 21.95 8.04 0.00 4.34
30 31 3.077359 CAAGATCCACAAGACTTGACCC 58.923 50.000 21.95 6.07 41.16 4.46
31 32 3.744660 ACAAGATCCACAAGACTTGACC 58.255 45.455 21.95 5.75 41.16 4.02
32 33 4.084328 CGAACAAGATCCACAAGACTTGAC 60.084 45.833 21.95 7.40 41.16 3.18
33 34 4.058124 CGAACAAGATCCACAAGACTTGA 58.942 43.478 21.95 0.00 41.16 3.02
34 35 3.809832 ACGAACAAGATCCACAAGACTTG 59.190 43.478 13.77 13.77 43.30 3.16
35 36 4.073293 ACGAACAAGATCCACAAGACTT 57.927 40.909 0.00 0.00 0.00 3.01
36 37 3.753294 ACGAACAAGATCCACAAGACT 57.247 42.857 0.00 0.00 0.00 3.24
37 38 3.186613 GGAACGAACAAGATCCACAAGAC 59.813 47.826 0.00 0.00 33.79 3.01
38 39 3.181459 TGGAACGAACAAGATCCACAAGA 60.181 43.478 0.00 0.00 38.02 3.02
39 40 3.138304 TGGAACGAACAAGATCCACAAG 58.862 45.455 0.00 0.00 38.02 3.16
40 41 3.201353 TGGAACGAACAAGATCCACAA 57.799 42.857 0.00 0.00 38.02 3.33
41 42 2.920724 TGGAACGAACAAGATCCACA 57.079 45.000 0.00 0.00 38.02 4.17
42 43 4.561735 TTTTGGAACGAACAAGATCCAC 57.438 40.909 0.00 0.00 41.78 4.02
43 44 5.300539 TGATTTTTGGAACGAACAAGATCCA 59.699 36.000 0.00 0.00 40.62 3.41
44 45 5.629435 GTGATTTTTGGAACGAACAAGATCC 59.371 40.000 0.00 0.00 34.14 3.36
45 46 6.205784 TGTGATTTTTGGAACGAACAAGATC 58.794 36.000 0.00 0.00 0.00 2.75
46 47 6.142818 TGTGATTTTTGGAACGAACAAGAT 57.857 33.333 0.00 0.00 0.00 2.40
47 48 5.568685 TGTGATTTTTGGAACGAACAAGA 57.431 34.783 0.00 0.00 0.00 3.02
48 49 6.074356 GGAATGTGATTTTTGGAACGAACAAG 60.074 38.462 0.00 0.00 0.00 3.16
49 50 5.751028 GGAATGTGATTTTTGGAACGAACAA 59.249 36.000 0.00 0.00 0.00 2.83
50 51 5.285651 GGAATGTGATTTTTGGAACGAACA 58.714 37.500 0.00 0.00 0.00 3.18
51 52 4.684242 GGGAATGTGATTTTTGGAACGAAC 59.316 41.667 0.00 0.00 0.00 3.95
52 53 4.557695 CGGGAATGTGATTTTTGGAACGAA 60.558 41.667 0.00 0.00 0.00 3.85
53 54 3.057876 CGGGAATGTGATTTTTGGAACGA 60.058 43.478 0.00 0.00 0.00 3.85
54 55 3.057876 TCGGGAATGTGATTTTTGGAACG 60.058 43.478 0.00 0.00 0.00 3.95
55 56 4.513198 TCGGGAATGTGATTTTTGGAAC 57.487 40.909 0.00 0.00 0.00 3.62
56 57 4.021544 CCTTCGGGAATGTGATTTTTGGAA 60.022 41.667 0.00 0.00 37.25 3.53
57 58 3.509575 CCTTCGGGAATGTGATTTTTGGA 59.490 43.478 0.00 0.00 37.25 3.53
58 59 3.258123 ACCTTCGGGAATGTGATTTTTGG 59.742 43.478 0.00 0.00 38.77 3.28
59 60 4.519540 ACCTTCGGGAATGTGATTTTTG 57.480 40.909 0.00 0.00 38.77 2.44
60 61 5.538118 GAAACCTTCGGGAATGTGATTTTT 58.462 37.500 0.00 0.00 38.77 1.94
61 62 5.134202 GAAACCTTCGGGAATGTGATTTT 57.866 39.130 0.00 0.00 38.77 1.82
62 63 4.783764 GAAACCTTCGGGAATGTGATTT 57.216 40.909 0.00 0.00 38.77 2.17
75 76 4.740268 AGTCCAAACAAAACGAAACCTTC 58.260 39.130 0.00 0.00 0.00 3.46
76 77 4.794278 AGTCCAAACAAAACGAAACCTT 57.206 36.364 0.00 0.00 0.00 3.50
77 78 4.673320 CGAAGTCCAAACAAAACGAAACCT 60.673 41.667 0.00 0.00 0.00 3.50
78 79 3.544682 CGAAGTCCAAACAAAACGAAACC 59.455 43.478 0.00 0.00 0.00 3.27
79 80 4.160594 ACGAAGTCCAAACAAAACGAAAC 58.839 39.130 0.00 0.00 29.74 2.78
80 81 4.422546 ACGAAGTCCAAACAAAACGAAA 57.577 36.364 0.00 0.00 29.74 3.46
81 82 4.422546 AACGAAGTCCAAACAAAACGAA 57.577 36.364 0.00 0.00 45.00 3.85
82 83 4.083431 TCAAACGAAGTCCAAACAAAACGA 60.083 37.500 0.00 0.00 45.00 3.85
83 84 4.159857 TCAAACGAAGTCCAAACAAAACG 58.840 39.130 0.00 0.00 45.00 3.60
84 85 7.924103 ATATCAAACGAAGTCCAAACAAAAC 57.076 32.000 0.00 0.00 45.00 2.43
85 86 7.650104 GGAATATCAAACGAAGTCCAAACAAAA 59.350 33.333 0.00 0.00 45.00 2.44
86 87 7.013846 AGGAATATCAAACGAAGTCCAAACAAA 59.986 33.333 0.00 0.00 45.00 2.83
87 88 6.488683 AGGAATATCAAACGAAGTCCAAACAA 59.511 34.615 0.00 0.00 45.00 2.83
88 89 6.001460 AGGAATATCAAACGAAGTCCAAACA 58.999 36.000 0.00 0.00 45.00 2.83
89 90 6.496338 AGGAATATCAAACGAAGTCCAAAC 57.504 37.500 0.00 0.00 45.00 2.93
90 91 7.519032 AAAGGAATATCAAACGAAGTCCAAA 57.481 32.000 0.00 0.00 45.00 3.28
91 92 7.519032 AAAAGGAATATCAAACGAAGTCCAA 57.481 32.000 0.00 0.00 45.00 3.53
92 93 7.447238 AGAAAAAGGAATATCAAACGAAGTCCA 59.553 33.333 0.00 0.00 45.00 4.02
93 94 7.817641 AGAAAAAGGAATATCAAACGAAGTCC 58.182 34.615 0.00 0.00 45.00 3.85
94 95 9.678941 AAAGAAAAAGGAATATCAAACGAAGTC 57.321 29.630 0.00 0.00 45.00 3.01
96 97 9.677567 TCAAAGAAAAAGGAATATCAAACGAAG 57.322 29.630 0.00 0.00 0.00 3.79
146 147 2.363406 GCCCAGCCCAGAATTGCT 60.363 61.111 0.00 0.00 38.67 3.91
147 148 3.464494 GGCCCAGCCCAGAATTGC 61.464 66.667 0.00 0.00 44.06 3.56
157 158 1.339151 CCTATTAATCGGAGGCCCAGC 60.339 57.143 0.00 0.00 0.00 4.85
158 159 1.978580 ACCTATTAATCGGAGGCCCAG 59.021 52.381 12.73 0.00 33.28 4.45
159 160 2.112279 ACCTATTAATCGGAGGCCCA 57.888 50.000 12.73 0.00 33.28 5.36
160 161 3.581770 ACTAACCTATTAATCGGAGGCCC 59.418 47.826 12.73 0.00 33.28 5.80
161 162 4.322574 GGACTAACCTATTAATCGGAGGCC 60.323 50.000 12.73 8.21 33.28 5.19
162 163 4.282703 TGGACTAACCTATTAATCGGAGGC 59.717 45.833 12.73 2.90 39.86 4.70
163 164 6.415206 TTGGACTAACCTATTAATCGGAGG 57.585 41.667 12.73 7.08 39.86 4.30
164 165 8.726870 TTTTTGGACTAACCTATTAATCGGAG 57.273 34.615 12.73 3.51 39.86 4.63
199 200 9.297037 GGACATTATTGGGCTTTATTACATACT 57.703 33.333 0.00 0.00 0.00 2.12
200 201 9.073475 TGGACATTATTGGGCTTTATTACATAC 57.927 33.333 0.00 0.00 0.00 2.39
201 202 9.647918 TTGGACATTATTGGGCTTTATTACATA 57.352 29.630 0.00 0.00 0.00 2.29
202 203 8.546083 TTGGACATTATTGGGCTTTATTACAT 57.454 30.769 0.00 0.00 0.00 2.29
203 204 7.962995 TTGGACATTATTGGGCTTTATTACA 57.037 32.000 0.00 0.00 0.00 2.41
204 205 9.093970 GTTTTGGACATTATTGGGCTTTATTAC 57.906 33.333 0.00 0.00 0.00 1.89
205 206 8.816894 TGTTTTGGACATTATTGGGCTTTATTA 58.183 29.630 0.00 0.00 32.00 0.98
206 207 7.684529 TGTTTTGGACATTATTGGGCTTTATT 58.315 30.769 0.00 0.00 32.00 1.40
207 208 7.038373 ACTGTTTTGGACATTATTGGGCTTTAT 60.038 33.333 0.00 0.00 37.69 1.40
208 209 6.268847 ACTGTTTTGGACATTATTGGGCTTTA 59.731 34.615 0.00 0.00 37.69 1.85
209 210 5.071653 ACTGTTTTGGACATTATTGGGCTTT 59.928 36.000 0.00 0.00 37.69 3.51
210 211 4.592778 ACTGTTTTGGACATTATTGGGCTT 59.407 37.500 0.00 0.00 37.69 4.35
211 212 4.159557 ACTGTTTTGGACATTATTGGGCT 58.840 39.130 0.00 0.00 37.69 5.19
212 213 4.535526 ACTGTTTTGGACATTATTGGGC 57.464 40.909 0.00 0.00 37.69 5.36
213 214 7.645058 ATCTACTGTTTTGGACATTATTGGG 57.355 36.000 0.00 0.00 37.69 4.12
223 224 9.725019 CCATGCTATATTATCTACTGTTTTGGA 57.275 33.333 0.00 0.00 0.00 3.53
224 225 9.725019 TCCATGCTATATTATCTACTGTTTTGG 57.275 33.333 0.00 0.00 0.00 3.28
226 227 9.442047 GCTCCATGCTATATTATCTACTGTTTT 57.558 33.333 0.00 0.00 38.95 2.43
227 228 8.597167 TGCTCCATGCTATATTATCTACTGTTT 58.403 33.333 0.00 0.00 43.37 2.83
228 229 8.138928 TGCTCCATGCTATATTATCTACTGTT 57.861 34.615 0.00 0.00 43.37 3.16
229 230 7.724490 TGCTCCATGCTATATTATCTACTGT 57.276 36.000 0.00 0.00 43.37 3.55
230 231 9.258826 GATTGCTCCATGCTATATTATCTACTG 57.741 37.037 0.00 0.00 43.37 2.74
231 232 8.985922 TGATTGCTCCATGCTATATTATCTACT 58.014 33.333 0.00 0.00 43.37 2.57
232 233 9.605275 TTGATTGCTCCATGCTATATTATCTAC 57.395 33.333 0.00 0.00 43.37 2.59
234 235 9.524496 TTTTGATTGCTCCATGCTATATTATCT 57.476 29.630 0.00 0.00 43.37 1.98
242 243 9.353431 TCTATAATTTTTGATTGCTCCATGCTA 57.647 29.630 0.00 0.00 43.37 3.49
243 244 8.241497 TCTATAATTTTTGATTGCTCCATGCT 57.759 30.769 0.00 0.00 43.37 3.79
247 248 9.337396 ACGTATCTATAATTTTTGATTGCTCCA 57.663 29.630 0.00 0.00 0.00 3.86
272 273 4.142447 TGACTAGCCTGATACGTCTTCAAC 60.142 45.833 0.00 0.00 0.00 3.18
273 274 4.014406 TGACTAGCCTGATACGTCTTCAA 58.986 43.478 0.00 0.00 0.00 2.69
274 275 3.617284 TGACTAGCCTGATACGTCTTCA 58.383 45.455 0.00 0.00 0.00 3.02
275 276 3.628487 ACTGACTAGCCTGATACGTCTTC 59.372 47.826 0.00 0.00 0.00 2.87
276 277 3.378742 CACTGACTAGCCTGATACGTCTT 59.621 47.826 0.00 0.00 0.00 3.01
277 278 2.946329 CACTGACTAGCCTGATACGTCT 59.054 50.000 0.00 0.00 0.00 4.18
278 279 2.943690 TCACTGACTAGCCTGATACGTC 59.056 50.000 0.00 0.00 0.00 4.34
279 280 3.000684 TCACTGACTAGCCTGATACGT 57.999 47.619 0.00 0.00 0.00 3.57
280 281 3.243234 CCTTCACTGACTAGCCTGATACG 60.243 52.174 0.00 0.00 0.00 3.06
281 282 3.954904 TCCTTCACTGACTAGCCTGATAC 59.045 47.826 0.00 0.00 0.00 2.24
282 283 4.211125 CTCCTTCACTGACTAGCCTGATA 58.789 47.826 0.00 0.00 0.00 2.15
283 284 3.030291 CTCCTTCACTGACTAGCCTGAT 58.970 50.000 0.00 0.00 0.00 2.90
284 285 2.225142 ACTCCTTCACTGACTAGCCTGA 60.225 50.000 0.00 0.00 0.00 3.86
285 286 2.094286 CACTCCTTCACTGACTAGCCTG 60.094 54.545 0.00 0.00 0.00 4.85
286 287 2.175202 CACTCCTTCACTGACTAGCCT 58.825 52.381 0.00 0.00 0.00 4.58
287 288 2.165437 CTCACTCCTTCACTGACTAGCC 59.835 54.545 0.00 0.00 0.00 3.93
288 289 3.085533 TCTCACTCCTTCACTGACTAGC 58.914 50.000 0.00 0.00 0.00 3.42
289 290 4.331968 AGTCTCACTCCTTCACTGACTAG 58.668 47.826 0.00 0.00 32.44 2.57
290 291 4.202472 TGAGTCTCACTCCTTCACTGACTA 60.202 45.833 0.00 0.00 44.44 2.59
291 292 3.153919 GAGTCTCACTCCTTCACTGACT 58.846 50.000 0.00 0.00 39.28 3.41
292 293 2.887783 TGAGTCTCACTCCTTCACTGAC 59.112 50.000 0.00 0.00 44.44 3.51
293 294 3.153130 CTGAGTCTCACTCCTTCACTGA 58.847 50.000 0.00 0.00 44.44 3.41
294 295 2.352617 GCTGAGTCTCACTCCTTCACTG 60.353 54.545 0.00 0.00 44.44 3.66
295 296 1.892474 GCTGAGTCTCACTCCTTCACT 59.108 52.381 0.00 0.00 44.44 3.41
296 297 1.067213 GGCTGAGTCTCACTCCTTCAC 60.067 57.143 0.00 0.00 44.44 3.18
297 298 1.261480 GGCTGAGTCTCACTCCTTCA 58.739 55.000 0.00 0.00 44.44 3.02
298 299 1.261480 TGGCTGAGTCTCACTCCTTC 58.739 55.000 14.35 0.00 44.44 3.46
299 300 1.830477 GATGGCTGAGTCTCACTCCTT 59.170 52.381 14.35 9.82 44.44 3.36
300 301 1.484038 GATGGCTGAGTCTCACTCCT 58.516 55.000 14.35 4.15 44.44 3.69
301 302 0.102120 CGATGGCTGAGTCTCACTCC 59.898 60.000 0.00 4.08 44.44 3.85
302 303 1.098869 TCGATGGCTGAGTCTCACTC 58.901 55.000 0.00 0.00 45.26 3.51
303 304 1.476085 CTTCGATGGCTGAGTCTCACT 59.524 52.381 0.00 0.00 0.00 3.41
304 305 1.474478 TCTTCGATGGCTGAGTCTCAC 59.526 52.381 0.00 0.00 0.00 3.51
305 306 1.747924 CTCTTCGATGGCTGAGTCTCA 59.252 52.381 1.78 1.78 0.00 3.27
306 307 2.020720 TCTCTTCGATGGCTGAGTCTC 58.979 52.381 0.00 0.00 0.00 3.36
307 308 2.136298 TCTCTTCGATGGCTGAGTCT 57.864 50.000 0.00 0.00 0.00 3.24
308 309 2.481104 CCTTCTCTTCGATGGCTGAGTC 60.481 54.545 0.00 0.00 31.08 3.36
309 310 1.480137 CCTTCTCTTCGATGGCTGAGT 59.520 52.381 0.00 0.00 31.08 3.41
310 311 1.753649 TCCTTCTCTTCGATGGCTGAG 59.246 52.381 0.00 0.00 36.99 3.35
311 312 1.478510 GTCCTTCTCTTCGATGGCTGA 59.521 52.381 0.00 0.00 36.99 4.26
312 313 1.472376 GGTCCTTCTCTTCGATGGCTG 60.472 57.143 0.00 0.00 36.99 4.85
313 314 0.827368 GGTCCTTCTCTTCGATGGCT 59.173 55.000 0.00 0.00 36.99 4.75
314 315 0.537188 TGGTCCTTCTCTTCGATGGC 59.463 55.000 0.00 0.00 36.99 4.40
315 316 2.103373 TCTGGTCCTTCTCTTCGATGG 58.897 52.381 0.00 0.00 38.09 3.51
316 317 3.779759 CTTCTGGTCCTTCTCTTCGATG 58.220 50.000 0.00 0.00 0.00 3.84
317 318 2.167487 GCTTCTGGTCCTTCTCTTCGAT 59.833 50.000 0.00 0.00 0.00 3.59
318 319 1.546476 GCTTCTGGTCCTTCTCTTCGA 59.454 52.381 0.00 0.00 0.00 3.71
319 320 1.734047 CGCTTCTGGTCCTTCTCTTCG 60.734 57.143 0.00 0.00 0.00 3.79
320 321 1.546476 TCGCTTCTGGTCCTTCTCTTC 59.454 52.381 0.00 0.00 0.00 2.87
321 322 1.548269 CTCGCTTCTGGTCCTTCTCTT 59.452 52.381 0.00 0.00 0.00 2.85
322 323 1.181786 CTCGCTTCTGGTCCTTCTCT 58.818 55.000 0.00 0.00 0.00 3.10
323 324 0.174617 CCTCGCTTCTGGTCCTTCTC 59.825 60.000 0.00 0.00 0.00 2.87
324 325 0.251832 TCCTCGCTTCTGGTCCTTCT 60.252 55.000 0.00 0.00 0.00 2.85
325 326 0.827368 ATCCTCGCTTCTGGTCCTTC 59.173 55.000 0.00 0.00 0.00 3.46
326 327 2.035632 CTATCCTCGCTTCTGGTCCTT 58.964 52.381 0.00 0.00 0.00 3.36
327 328 1.215673 TCTATCCTCGCTTCTGGTCCT 59.784 52.381 0.00 0.00 0.00 3.85
328 329 1.693627 TCTATCCTCGCTTCTGGTCC 58.306 55.000 0.00 0.00 0.00 4.46
329 330 4.521256 AGTTATCTATCCTCGCTTCTGGTC 59.479 45.833 0.00 0.00 0.00 4.02
330 331 4.475345 AGTTATCTATCCTCGCTTCTGGT 58.525 43.478 0.00 0.00 0.00 4.00
331 332 4.520874 TGAGTTATCTATCCTCGCTTCTGG 59.479 45.833 0.00 0.00 0.00 3.86
332 333 5.697473 TGAGTTATCTATCCTCGCTTCTG 57.303 43.478 0.00 0.00 0.00 3.02
333 334 7.284489 GGATATGAGTTATCTATCCTCGCTTCT 59.716 40.741 0.00 0.00 38.47 2.85
334 335 7.067615 TGGATATGAGTTATCTATCCTCGCTTC 59.932 40.741 8.76 0.00 40.95 3.86
335 336 6.892456 TGGATATGAGTTATCTATCCTCGCTT 59.108 38.462 8.76 0.00 40.95 4.68
336 337 6.427441 TGGATATGAGTTATCTATCCTCGCT 58.573 40.000 8.76 0.00 40.95 4.93
337 338 6.701145 TGGATATGAGTTATCTATCCTCGC 57.299 41.667 8.76 0.00 40.95 5.03
349 350 9.998106 GTACTTACATGGTATTGGATATGAGTT 57.002 33.333 0.00 0.00 0.00 3.01
350 351 8.594550 GGTACTTACATGGTATTGGATATGAGT 58.405 37.037 0.00 0.00 0.00 3.41
351 352 8.593679 TGGTACTTACATGGTATTGGATATGAG 58.406 37.037 0.00 0.00 0.00 2.90
352 353 8.499288 TGGTACTTACATGGTATTGGATATGA 57.501 34.615 0.00 0.00 0.00 2.15
353 354 8.593679 TCTGGTACTTACATGGTATTGGATATG 58.406 37.037 0.00 0.00 0.00 1.78
354 355 8.736097 TCTGGTACTTACATGGTATTGGATAT 57.264 34.615 0.00 0.00 0.00 1.63
355 356 8.555896 TTCTGGTACTTACATGGTATTGGATA 57.444 34.615 0.00 0.00 0.00 2.59
356 357 7.446106 TTCTGGTACTTACATGGTATTGGAT 57.554 36.000 0.00 0.00 0.00 3.41
357 358 6.631766 GCTTCTGGTACTTACATGGTATTGGA 60.632 42.308 0.00 0.00 0.00 3.53
358 359 5.527582 GCTTCTGGTACTTACATGGTATTGG 59.472 44.000 0.00 0.00 0.00 3.16
359 360 6.112734 TGCTTCTGGTACTTACATGGTATTG 58.887 40.000 0.00 0.00 0.00 1.90
360 361 6.308015 TGCTTCTGGTACTTACATGGTATT 57.692 37.500 0.00 0.00 0.00 1.89
361 362 5.950544 TGCTTCTGGTACTTACATGGTAT 57.049 39.130 0.00 0.00 0.00 2.73
362 363 5.482526 TCTTGCTTCTGGTACTTACATGGTA 59.517 40.000 0.00 0.00 0.00 3.25
363 364 4.286032 TCTTGCTTCTGGTACTTACATGGT 59.714 41.667 0.00 0.00 0.00 3.55
364 365 4.832248 TCTTGCTTCTGGTACTTACATGG 58.168 43.478 0.00 0.00 0.00 3.66
365 366 6.801539 TTTCTTGCTTCTGGTACTTACATG 57.198 37.500 0.00 0.00 0.00 3.21
366 367 7.665559 TCATTTTCTTGCTTCTGGTACTTACAT 59.334 33.333 0.00 0.00 0.00 2.29
367 368 6.995686 TCATTTTCTTGCTTCTGGTACTTACA 59.004 34.615 0.00 0.00 0.00 2.41
368 369 7.435068 TCATTTTCTTGCTTCTGGTACTTAC 57.565 36.000 0.00 0.00 0.00 2.34
369 370 8.635765 AATCATTTTCTTGCTTCTGGTACTTA 57.364 30.769 0.00 0.00 0.00 2.24
370 371 7.530426 AATCATTTTCTTGCTTCTGGTACTT 57.470 32.000 0.00 0.00 0.00 2.24
371 372 8.814038 ATAATCATTTTCTTGCTTCTGGTACT 57.186 30.769 0.00 0.00 0.00 2.73
374 375 9.412460 TGATATAATCATTTTCTTGCTTCTGGT 57.588 29.630 0.00 0.00 33.59 4.00
398 399 9.833917 TTGAAACCCGTATATATGTACATTTGA 57.166 29.630 14.77 0.00 0.00 2.69
400 401 9.280174 CCTTGAAACCCGTATATATGTACATTT 57.720 33.333 14.77 8.94 0.00 2.32
401 402 7.389607 GCCTTGAAACCCGTATATATGTACATT 59.610 37.037 14.77 4.83 0.00 2.71
402 403 6.877322 GCCTTGAAACCCGTATATATGTACAT 59.123 38.462 13.93 13.93 0.00 2.29
403 404 6.183360 TGCCTTGAAACCCGTATATATGTACA 60.183 38.462 9.90 0.00 0.00 2.90
404 405 6.225318 TGCCTTGAAACCCGTATATATGTAC 58.775 40.000 0.00 0.00 0.00 2.90
405 406 6.422344 TGCCTTGAAACCCGTATATATGTA 57.578 37.500 0.00 0.00 0.00 2.29
406 407 5.298989 TGCCTTGAAACCCGTATATATGT 57.701 39.130 0.00 0.00 0.00 2.29
407 408 4.695455 CCTGCCTTGAAACCCGTATATATG 59.305 45.833 0.00 0.00 0.00 1.78
408 409 4.806286 GCCTGCCTTGAAACCCGTATATAT 60.806 45.833 0.00 0.00 0.00 0.86
409 410 3.495453 GCCTGCCTTGAAACCCGTATATA 60.495 47.826 0.00 0.00 0.00 0.86
410 411 2.748465 GCCTGCCTTGAAACCCGTATAT 60.748 50.000 0.00 0.00 0.00 0.86
411 412 1.407712 GCCTGCCTTGAAACCCGTATA 60.408 52.381 0.00 0.00 0.00 1.47
412 413 0.679960 GCCTGCCTTGAAACCCGTAT 60.680 55.000 0.00 0.00 0.00 3.06
413 414 1.302993 GCCTGCCTTGAAACCCGTA 60.303 57.895 0.00 0.00 0.00 4.02
414 415 2.597510 GCCTGCCTTGAAACCCGT 60.598 61.111 0.00 0.00 0.00 5.28
415 416 2.199652 TTGCCTGCCTTGAAACCCG 61.200 57.895 0.00 0.00 0.00 5.28
416 417 1.115326 AGTTGCCTGCCTTGAAACCC 61.115 55.000 0.00 0.00 0.00 4.11
417 418 0.315251 GAGTTGCCTGCCTTGAAACC 59.685 55.000 0.00 0.00 0.00 3.27
418 419 0.315251 GGAGTTGCCTGCCTTGAAAC 59.685 55.000 0.00 0.00 0.00 2.78
419 420 1.172180 CGGAGTTGCCTGCCTTGAAA 61.172 55.000 0.00 0.00 0.00 2.69
420 421 1.600636 CGGAGTTGCCTGCCTTGAA 60.601 57.895 0.00 0.00 0.00 2.69
421 422 1.476845 TACGGAGTTGCCTGCCTTGA 61.477 55.000 0.00 0.00 37.78 3.02
422 423 0.605319 TTACGGAGTTGCCTGCCTTG 60.605 55.000 0.00 0.00 37.78 3.61
423 424 0.328258 ATTACGGAGTTGCCTGCCTT 59.672 50.000 0.00 0.00 37.78 4.35
424 425 0.392998 CATTACGGAGTTGCCTGCCT 60.393 55.000 0.00 0.00 37.78 4.75
425 426 0.392461 TCATTACGGAGTTGCCTGCC 60.392 55.000 0.00 0.00 37.78 4.85
426 427 0.727398 GTCATTACGGAGTTGCCTGC 59.273 55.000 0.00 0.00 37.78 4.85
427 428 2.093306 TGTCATTACGGAGTTGCCTG 57.907 50.000 0.00 0.00 37.78 4.85
428 429 2.632377 CATGTCATTACGGAGTTGCCT 58.368 47.619 0.00 0.00 37.78 4.75
429 430 1.670811 CCATGTCATTACGGAGTTGCC 59.329 52.381 0.00 0.00 37.78 4.52
430 431 1.064060 GCCATGTCATTACGGAGTTGC 59.936 52.381 0.00 0.00 37.78 4.17
431 432 2.632377 AGCCATGTCATTACGGAGTTG 58.368 47.619 0.00 0.00 37.78 3.16
432 433 4.481368 TTAGCCATGTCATTACGGAGTT 57.519 40.909 0.00 0.00 37.78 3.01
434 435 4.508124 GTCTTTAGCCATGTCATTACGGAG 59.492 45.833 0.00 0.00 0.00 4.63
435 436 4.439057 GTCTTTAGCCATGTCATTACGGA 58.561 43.478 0.00 0.00 0.00 4.69
436 437 3.560068 GGTCTTTAGCCATGTCATTACGG 59.440 47.826 0.00 0.00 0.00 4.02
437 438 4.188462 TGGTCTTTAGCCATGTCATTACG 58.812 43.478 0.00 0.00 0.00 3.18
438 439 4.035675 GCTGGTCTTTAGCCATGTCATTAC 59.964 45.833 0.00 0.00 35.19 1.89
439 440 4.080356 AGCTGGTCTTTAGCCATGTCATTA 60.080 41.667 0.00 0.00 42.07 1.90
440 441 3.019564 GCTGGTCTTTAGCCATGTCATT 58.980 45.455 0.00 0.00 35.19 2.57
441 442 2.240667 AGCTGGTCTTTAGCCATGTCAT 59.759 45.455 0.00 0.00 42.07 3.06
442 443 1.630369 AGCTGGTCTTTAGCCATGTCA 59.370 47.619 0.00 0.00 42.07 3.58
443 444 2.409948 AGCTGGTCTTTAGCCATGTC 57.590 50.000 0.00 0.00 42.07 3.06
444 445 2.571653 TGTAGCTGGTCTTTAGCCATGT 59.428 45.455 0.00 0.00 42.07 3.21
445 446 3.118629 TCTGTAGCTGGTCTTTAGCCATG 60.119 47.826 0.00 0.00 42.07 3.66
446 447 3.107601 TCTGTAGCTGGTCTTTAGCCAT 58.892 45.455 0.00 0.00 42.07 4.40
447 448 2.536066 TCTGTAGCTGGTCTTTAGCCA 58.464 47.619 0.00 0.00 42.07 4.75
448 449 3.462021 CATCTGTAGCTGGTCTTTAGCC 58.538 50.000 0.00 0.00 42.07 3.93
449 450 2.869192 GCATCTGTAGCTGGTCTTTAGC 59.131 50.000 0.00 0.00 41.43 3.09
450 451 3.868077 GTGCATCTGTAGCTGGTCTTTAG 59.132 47.826 0.00 0.00 0.00 1.85
451 452 3.260632 TGTGCATCTGTAGCTGGTCTTTA 59.739 43.478 0.00 0.00 0.00 1.85
452 453 2.038952 TGTGCATCTGTAGCTGGTCTTT 59.961 45.455 0.00 0.00 0.00 2.52
453 454 1.625315 TGTGCATCTGTAGCTGGTCTT 59.375 47.619 0.00 0.00 0.00 3.01
454 455 1.269958 TGTGCATCTGTAGCTGGTCT 58.730 50.000 0.00 0.00 0.00 3.85
455 456 1.734465 GTTGTGCATCTGTAGCTGGTC 59.266 52.381 0.00 0.00 0.00 4.02
456 457 1.813513 GTTGTGCATCTGTAGCTGGT 58.186 50.000 0.00 0.00 0.00 4.00
457 458 0.723414 CGTTGTGCATCTGTAGCTGG 59.277 55.000 0.00 0.00 0.00 4.85
458 459 0.095935 GCGTTGTGCATCTGTAGCTG 59.904 55.000 0.00 0.00 45.45 4.24
459 460 2.460330 GCGTTGTGCATCTGTAGCT 58.540 52.632 0.00 0.00 45.45 3.32
469 470 2.405892 AAGATGACTTTGCGTTGTGC 57.594 45.000 0.00 0.00 46.70 4.57
518 519 5.144100 TGCTAACTGGATTTTCCCAAGAAA 58.856 37.500 0.00 0.00 40.26 2.52
519 520 4.735369 TGCTAACTGGATTTTCCCAAGAA 58.265 39.130 0.00 0.00 35.03 2.52
520 521 4.042809 TCTGCTAACTGGATTTTCCCAAGA 59.957 41.667 0.00 0.00 35.03 3.02
521 522 4.335416 TCTGCTAACTGGATTTTCCCAAG 58.665 43.478 0.00 0.00 35.03 3.61
522 523 4.380843 TCTGCTAACTGGATTTTCCCAA 57.619 40.909 0.00 0.00 35.03 4.12
523 524 4.042809 TCTTCTGCTAACTGGATTTTCCCA 59.957 41.667 0.00 0.00 35.03 4.37
524 525 4.589908 TCTTCTGCTAACTGGATTTTCCC 58.410 43.478 0.00 0.00 35.03 3.97
525 526 5.249420 ACTCTTCTGCTAACTGGATTTTCC 58.751 41.667 0.00 0.00 36.96 3.13
526 527 6.809630 AACTCTTCTGCTAACTGGATTTTC 57.190 37.500 0.00 0.00 0.00 2.29
527 528 6.372937 GCTAACTCTTCTGCTAACTGGATTTT 59.627 38.462 0.00 0.00 0.00 1.82
528 529 5.877564 GCTAACTCTTCTGCTAACTGGATTT 59.122 40.000 0.00 0.00 0.00 2.17
529 530 5.046304 TGCTAACTCTTCTGCTAACTGGATT 60.046 40.000 0.00 0.00 0.00 3.01
530 531 4.467795 TGCTAACTCTTCTGCTAACTGGAT 59.532 41.667 0.00 0.00 0.00 3.41
531 532 3.832490 TGCTAACTCTTCTGCTAACTGGA 59.168 43.478 0.00 0.00 0.00 3.86
537 538 7.721842 AGATACTATGTGCTAACTCTTCTGCTA 59.278 37.037 0.00 0.00 0.00 3.49
546 547 7.201530 GCGACAAAAAGATACTATGTGCTAACT 60.202 37.037 0.00 0.00 0.00 2.24
548 549 6.592220 TGCGACAAAAAGATACTATGTGCTAA 59.408 34.615 0.00 0.00 0.00 3.09
549 550 6.103330 TGCGACAAAAAGATACTATGTGCTA 58.897 36.000 0.00 0.00 0.00 3.49
550 551 4.935205 TGCGACAAAAAGATACTATGTGCT 59.065 37.500 0.00 0.00 0.00 4.40
551 552 5.216566 TGCGACAAAAAGATACTATGTGC 57.783 39.130 0.00 0.00 0.00 4.57
554 555 7.162546 CGATGTTTGCGACAAAAAGATACTATG 59.837 37.037 6.59 0.00 42.62 2.23
555 556 7.064134 TCGATGTTTGCGACAAAAAGATACTAT 59.936 33.333 6.59 0.00 42.62 2.12
556 557 6.366604 TCGATGTTTGCGACAAAAAGATACTA 59.633 34.615 6.59 0.00 42.62 1.82
557 558 5.178623 TCGATGTTTGCGACAAAAAGATACT 59.821 36.000 6.59 0.00 42.62 2.12
558 559 5.379003 TCGATGTTTGCGACAAAAAGATAC 58.621 37.500 6.59 0.00 42.62 2.24
578 579 2.353269 AGCGTCAACAAACAAACATCGA 59.647 40.909 0.00 0.00 0.00 3.59
616 617 8.616076 ACTTGCTTAGATTTCCAAAATCTATCG 58.384 33.333 18.09 14.26 38.58 2.92
653 654 6.781857 TCCTGTCTCTCTATATTGTCCCTA 57.218 41.667 0.00 0.00 0.00 3.53
655 656 8.474025 CAATATCCTGTCTCTCTATATTGTCCC 58.526 40.741 0.00 0.00 36.47 4.46
671 672 7.408756 TCATTTTAGCTTTGCAATATCCTGT 57.591 32.000 0.00 0.00 0.00 4.00
698 699 4.427312 GCCAATTGAGCACTATTTCCAAG 58.573 43.478 7.12 0.00 0.00 3.61
708 709 3.638484 AGTTTAAACGCCAATTGAGCAC 58.362 40.909 12.54 2.43 0.00 4.40
732 733 8.820933 TGCATACAATTTTCATCGAAACAAAAA 58.179 25.926 0.00 0.00 30.83 1.94
737 738 5.861251 TGGTGCATACAATTTTCATCGAAAC 59.139 36.000 0.00 0.00 30.83 2.78
740 741 4.699735 AGTGGTGCATACAATTTTCATCGA 59.300 37.500 6.80 0.00 0.00 3.59
804 809 7.385205 AGAGTCACGGATTGTATTGCATAATAC 59.615 37.037 2.16 2.16 45.71 1.89
838 2128 1.125711 ACGGCTTGTAGTGTTCCCCT 61.126 55.000 0.00 0.00 0.00 4.79
839 2129 0.609662 TACGGCTTGTAGTGTTCCCC 59.390 55.000 0.00 0.00 0.00 4.81
840 2130 2.071540 GTTACGGCTTGTAGTGTTCCC 58.928 52.381 0.00 0.00 33.75 3.97
944 2237 1.250328 CAGCAGCCCAAAGTGAATCA 58.750 50.000 0.00 0.00 0.00 2.57
971 2270 1.762858 TGGTGGGTGTGGAGTCGAA 60.763 57.895 0.00 0.00 0.00 3.71
972 2271 2.123208 TGGTGGGTGTGGAGTCGA 60.123 61.111 0.00 0.00 0.00 4.20
974 2273 0.321653 GATGTGGTGGGTGTGGAGTC 60.322 60.000 0.00 0.00 0.00 3.36
975 2274 1.761174 GATGTGGTGGGTGTGGAGT 59.239 57.895 0.00 0.00 0.00 3.85
976 2275 1.002134 GGATGTGGTGGGTGTGGAG 60.002 63.158 0.00 0.00 0.00 3.86
977 2276 2.534396 GGGATGTGGTGGGTGTGGA 61.534 63.158 0.00 0.00 0.00 4.02
978 2277 2.035626 GGGATGTGGTGGGTGTGG 59.964 66.667 0.00 0.00 0.00 4.17
979 2278 2.359850 CGGGATGTGGTGGGTGTG 60.360 66.667 0.00 0.00 0.00 3.82
980 2279 4.344865 GCGGGATGTGGTGGGTGT 62.345 66.667 0.00 0.00 0.00 4.16
1228 2562 0.893447 CGAAGAAACCGAGTAGGGGT 59.107 55.000 0.00 0.00 46.96 4.95
1388 2729 5.181433 GGATCTGGTTCTTAGGTTTGTTGAC 59.819 44.000 0.00 0.00 0.00 3.18
1525 2884 0.523072 CTTGGAAGTGTTGGGCATCG 59.477 55.000 0.00 0.00 0.00 3.84
1526 2885 1.620822 ACTTGGAAGTGTTGGGCATC 58.379 50.000 0.00 0.00 37.98 3.91
1548 2907 0.304705 GTTGTCTGCCACTGTCAACG 59.695 55.000 0.00 0.00 31.24 4.10
1609 2968 2.895865 CATGCGCCAGCCTCTGAG 60.896 66.667 4.18 0.00 44.33 3.35
1658 3017 3.416277 CAACATTACTCATTGGAACGCG 58.584 45.455 3.53 3.53 0.00 6.01
1706 3068 0.394352 GAATCCCCAATCAGCACGGT 60.394 55.000 0.00 0.00 0.00 4.83
1708 3070 2.408333 GGAATCCCCAATCAGCACG 58.592 57.895 0.00 0.00 34.14 5.34
1895 3257 3.384816 TCCATAACTGGATGCTGCG 57.615 52.632 0.00 0.00 46.95 5.18
1996 3358 9.442047 CCTTGTATTATTATGTCATTCTCCTCC 57.558 37.037 0.00 0.00 0.00 4.30
2014 3376 1.625884 CCCCATGGGCCCTTGTATT 59.374 57.895 30.31 4.72 35.35 1.89
2053 3415 4.581309 AAAGAGGATGTGATGTGTCCAT 57.419 40.909 0.00 0.00 34.42 3.41
2605 4049 6.431234 ACCACACAAGAATCAGAATAGAAACC 59.569 38.462 0.00 0.00 0.00 3.27
2933 4523 6.542821 TCTTCAACTTCCCACTATTTCATGT 58.457 36.000 0.00 0.00 0.00 3.21
2934 4524 7.337689 TCATCTTCAACTTCCCACTATTTCATG 59.662 37.037 0.00 0.00 0.00 3.07
2936 4526 6.655003 GTCATCTTCAACTTCCCACTATTTCA 59.345 38.462 0.00 0.00 0.00 2.69
2937 4527 6.881602 AGTCATCTTCAACTTCCCACTATTTC 59.118 38.462 0.00 0.00 0.00 2.17
2938 4528 6.784031 AGTCATCTTCAACTTCCCACTATTT 58.216 36.000 0.00 0.00 0.00 1.40
2939 4529 6.380079 AGTCATCTTCAACTTCCCACTATT 57.620 37.500 0.00 0.00 0.00 1.73
2940 4530 6.440647 TGTAGTCATCTTCAACTTCCCACTAT 59.559 38.462 0.00 0.00 0.00 2.12
2941 4531 5.778241 TGTAGTCATCTTCAACTTCCCACTA 59.222 40.000 0.00 0.00 0.00 2.74
2976 4566 4.292186 ACATGTGCCTATTGAGTTCACT 57.708 40.909 0.00 0.00 0.00 3.41
3109 4703 8.750298 TCAGTAGGACTCTTCTAAAAATGGTAG 58.250 37.037 0.00 0.00 0.00 3.18
3131 4725 4.067896 CAAATGCACTTGGTACTCTCAGT 58.932 43.478 0.00 0.00 0.00 3.41
3366 5189 9.476202 AAAAGATAAGCAAAACTACACCAATTC 57.524 29.630 0.00 0.00 0.00 2.17
3573 5424 3.074390 TCATGTTAGGGGATAATGGCAGG 59.926 47.826 0.00 0.00 0.00 4.85
3632 5483 6.349363 CCAAAAGTGCAGAAAATAGACTACCC 60.349 42.308 0.00 0.00 0.00 3.69
3825 5679 1.464608 CGGCCAAATATAGATGCACCG 59.535 52.381 2.24 0.00 0.00 4.94
3826 5680 2.778299 TCGGCCAAATATAGATGCACC 58.222 47.619 2.24 0.00 0.00 5.01
3827 5681 4.455533 TCATTCGGCCAAATATAGATGCAC 59.544 41.667 2.24 0.00 0.00 4.57
3837 5691 5.151297 AGAAACATTTCATTCGGCCAAAT 57.849 34.783 2.24 0.00 39.61 2.32
3840 5694 5.913137 AATAGAAACATTTCATTCGGCCA 57.087 34.783 2.24 0.00 39.61 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.