Multiple sequence alignment - TraesCS6A01G061800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G061800 chr6A 100.000 3952 0 0 1 3952 33017658 33013707 0.000000e+00 7299.0
1 TraesCS6A01G061800 chr6A 82.958 1332 145 47 2009 3298 45414971 45413680 0.000000e+00 1127.0
2 TraesCS6A01G061800 chr6A 86.095 676 91 3 1007 1680 33404903 33405577 0.000000e+00 725.0
3 TraesCS6A01G061800 chr6A 86.398 669 81 7 1007 1667 33305902 33306568 0.000000e+00 723.0
4 TraesCS6A01G061800 chr6A 87.741 571 66 4 1007 1576 33530560 33531127 0.000000e+00 664.0
5 TraesCS6A01G061800 chr6A 83.806 494 38 16 3437 3898 45413680 45413197 7.850000e-117 431.0
6 TraesCS6A01G061800 chr6A 81.167 600 52 36 2009 2594 33405583 33406135 3.650000e-115 425.0
7 TraesCS6A01G061800 chr6A 83.406 458 55 10 2689 3141 33307489 33307930 4.760000e-109 405.0
8 TraesCS6A01G061800 chr6A 83.514 370 43 11 2739 3102 33531301 33531658 2.940000e-86 329.0
9 TraesCS6A01G061800 chr6A 82.902 386 45 12 2720 3099 33410136 33410506 1.060000e-85 327.0
10 TraesCS6A01G061800 chr6A 82.117 274 36 9 2825 3087 33185955 33185684 5.140000e-54 222.0
11 TraesCS6A01G061800 chr6A 76.943 386 60 20 2710 3087 47483545 47483181 4.030000e-45 193.0
12 TraesCS6A01G061800 chr6A 76.230 366 80 6 1161 1524 33187598 33187238 1.880000e-43 187.0
13 TraesCS6A01G061800 chr6A 84.706 170 23 1 3138 3304 33532293 33532462 2.440000e-37 167.0
14 TraesCS6A01G061800 chr6A 93.846 65 3 1 3889 3952 33013678 33013742 3.250000e-16 97.1
15 TraesCS6A01G061800 chr6A 95.652 46 2 0 1 46 595172284 595172329 1.520000e-09 75.0
16 TraesCS6A01G061800 chr6B 93.220 1003 34 10 2455 3431 59827527 59826533 0.000000e+00 1445.0
17 TraesCS6A01G061800 chr6B 84.099 1327 136 48 2009 3298 78447166 78445878 0.000000e+00 1212.0
18 TraesCS6A01G061800 chr6B 94.456 469 15 2 2009 2474 59828017 59827557 0.000000e+00 712.0
19 TraesCS6A01G061800 chr6B 96.253 427 16 0 1254 1680 59828449 59828023 0.000000e+00 701.0
20 TraesCS6A01G061800 chr6B 87.395 595 69 5 1007 1598 60623580 60624171 0.000000e+00 678.0
21 TraesCS6A01G061800 chr6B 87.801 582 65 6 1007 1586 60657826 60658403 0.000000e+00 676.0
22 TraesCS6A01G061800 chr6B 87.403 516 24 14 3478 3952 59826306 59825791 4.460000e-154 555.0
23 TraesCS6A01G061800 chr6B 82.863 531 55 24 2491 3000 78340356 78339841 1.010000e-120 444.0
24 TraesCS6A01G061800 chr6B 83.878 459 50 11 2688 3141 60633401 60633840 2.200000e-112 416.0
25 TraesCS6A01G061800 chr6B 87.826 345 40 2 1007 1350 60632329 60632672 1.710000e-108 403.0
26 TraesCS6A01G061800 chr6B 87.123 365 34 9 3437 3795 78445878 78445521 6.150000e-108 401.0
27 TraesCS6A01G061800 chr6B 83.619 409 46 11 2739 3141 60624321 60624714 8.070000e-97 364.0
28 TraesCS6A01G061800 chr6B 89.113 248 27 0 2998 3245 78293397 78293150 3.840000e-80 309.0
29 TraesCS6A01G061800 chr6B 89.113 248 27 0 2998 3245 78338842 78338595 3.840000e-80 309.0
30 TraesCS6A01G061800 chr6B 84.000 325 32 6 3593 3904 78336735 78336418 1.070000e-75 294.0
31 TraesCS6A01G061800 chr6B 90.868 219 13 3 1007 1219 59828666 59828449 1.800000e-73 287.0
32 TraesCS6A01G061800 chr6B 83.385 325 34 6 3593 3904 78291291 78290974 2.320000e-72 283.0
33 TraesCS6A01G061800 chr6B 78.685 441 67 20 2083 2510 78296731 78296305 6.510000e-68 268.0
34 TraesCS6A01G061800 chr6B 78.837 430 65 19 2083 2499 78342350 78341934 2.340000e-67 267.0
35 TraesCS6A01G061800 chr6B 90.972 144 12 1 140 283 364332920 364333062 4.030000e-45 193.0
36 TraesCS6A01G061800 chr6B 90.972 144 12 1 140 283 364340157 364340299 4.030000e-45 193.0
37 TraesCS6A01G061800 chr6B 93.548 124 8 0 2009 2132 60633137 60633260 6.740000e-43 185.0
38 TraesCS6A01G061800 chr6B 95.652 46 2 0 2 47 597082332 597082377 1.520000e-09 75.0
39 TraesCS6A01G061800 chrUn 82.980 1322 137 60 2009 3298 112530318 112531583 0.000000e+00 1114.0
40 TraesCS6A01G061800 chrUn 85.753 372 24 14 3437 3785 112531583 112531948 2.240000e-97 366.0
41 TraesCS6A01G061800 chrUn 81.894 359 47 2 1007 1365 27688162 27687822 1.800000e-73 287.0
42 TraesCS6A01G061800 chrUn 78.916 332 50 15 2691 3013 27076594 27076914 1.440000e-49 207.0
43 TraesCS6A01G061800 chrUn 79.487 156 28 4 2862 3014 27086258 27086412 1.500000e-19 108.0
44 TraesCS6A01G061800 chr6D 85.714 651 85 6 360 1005 29378645 29379292 0.000000e+00 680.0
45 TraesCS6A01G061800 chr6D 87.435 581 69 4 1007 1586 29093942 29093365 0.000000e+00 665.0
46 TraesCS6A01G061800 chr6D 87.891 256 28 2 1679 1933 470958520 470958773 8.300000e-77 298.0
47 TraesCS6A01G061800 chr6D 92.593 189 9 5 1848 2032 320601294 320601481 2.340000e-67 267.0
48 TraesCS6A01G061800 chr6D 82.946 258 36 7 2825 3076 29222233 29222488 3.970000e-55 226.0
49 TraesCS6A01G061800 chr6D 76.190 399 89 5 1125 1521 29205944 29206338 5.180000e-49 206.0
50 TraesCS6A01G061800 chr6D 87.407 135 13 4 3302 3433 445899933 445899800 6.840000e-33 152.0
51 TraesCS6A01G061800 chr6D 82.424 165 27 2 3141 3304 29098050 29097887 4.120000e-30 143.0
52 TraesCS6A01G061800 chr6D 82.482 137 20 2 2889 3022 27847189 27847324 2.500000e-22 117.0
53 TraesCS6A01G061800 chr6D 82.407 108 15 2 2905 3009 35715633 35715527 1.510000e-14 91.6
54 TraesCS6A01G061800 chr6D 80.159 126 19 3 2966 3087 29934319 29934442 5.440000e-14 89.8
55 TraesCS6A01G061800 chr6D 74.779 226 36 14 2715 2935 27125247 27125038 9.100000e-12 82.4
56 TraesCS6A01G061800 chr6D 82.716 81 13 1 2906 2986 35639756 35639677 1.970000e-08 71.3
57 TraesCS6A01G061800 chr1D 85.788 387 48 6 625 1008 254638424 254638042 1.710000e-108 403.0
58 TraesCS6A01G061800 chr1D 98.788 165 2 0 1847 2011 126223341 126223505 1.070000e-75 294.0
59 TraesCS6A01G061800 chr1D 98.214 168 3 0 1844 2011 160451491 160451658 1.070000e-75 294.0
60 TraesCS6A01G061800 chr1D 92.593 189 9 5 1848 2032 27020268 27020455 2.340000e-67 267.0
61 TraesCS6A01G061800 chr1D 87.660 235 15 7 1784 2010 415400186 415400414 1.090000e-65 261.0
62 TraesCS6A01G061800 chr1D 93.939 66 2 2 284 347 124919451 124919516 9.040000e-17 99.0
63 TraesCS6A01G061800 chr1D 97.826 46 1 0 1 46 314336729 314336684 3.270000e-11 80.5
64 TraesCS6A01G061800 chr3D 86.364 352 43 4 656 1005 452573100 452573448 2.880000e-101 379.0
65 TraesCS6A01G061800 chr3D 84.375 384 55 4 624 1005 581095638 581096018 4.820000e-99 372.0
66 TraesCS6A01G061800 chr3D 96.296 108 2 1 176 283 296181945 296181840 4.060000e-40 176.0
67 TraesCS6A01G061800 chr3D 95.238 63 3 0 57 119 296184016 296183954 2.510000e-17 100.0
68 TraesCS6A01G061800 chr3D 96.610 59 1 1 284 341 582884070 582884128 3.250000e-16 97.1
69 TraesCS6A01G061800 chr3D 95.745 47 2 0 1 47 91710929 91710883 4.230000e-10 76.8
70 TraesCS6A01G061800 chr7B 84.375 384 53 6 624 1004 332310928 332310549 1.730000e-98 370.0
71 TraesCS6A01G061800 chr7B 93.939 66 2 2 284 347 618450247 618450182 9.040000e-17 99.0
72 TraesCS6A01G061800 chr2A 84.156 385 54 6 624 1005 726299324 726299704 2.240000e-97 366.0
73 TraesCS6A01G061800 chr2A 92.737 179 13 0 1668 1846 683721314 683721492 3.920000e-65 259.0
74 TraesCS6A01G061800 chr2A 91.803 122 9 1 161 282 775731581 775731701 6.790000e-38 169.0
75 TraesCS6A01G061800 chr5D 83.763 388 57 5 624 1008 61485455 61485071 2.900000e-96 363.0
76 TraesCS6A01G061800 chr5D 92.899 169 10 2 1679 1846 97585838 97586005 1.100000e-60 244.0
77 TraesCS6A01G061800 chr5D 90.196 51 3 1 2085 2135 553759997 553760045 9.170000e-07 65.8
78 TraesCS6A01G061800 chr4A 83.763 388 57 5 624 1008 6819431 6819047 2.900000e-96 363.0
79 TraesCS6A01G061800 chr4A 89.706 68 5 2 3887 3952 200093609 200093542 7.040000e-13 86.1
80 TraesCS6A01G061800 chr4A 100.000 37 0 0 3916 3952 200093541 200093577 7.090000e-08 69.4
81 TraesCS6A01G061800 chr2D 83.896 385 56 5 624 1005 619938231 619938612 2.900000e-96 363.0
82 TraesCS6A01G061800 chr2D 84.699 366 50 5 646 1008 624783247 624782885 1.040000e-95 361.0
83 TraesCS6A01G061800 chr2D 93.939 66 2 2 284 347 16128796 16128731 9.040000e-17 99.0
84 TraesCS6A01G061800 chr2D 95.652 46 2 0 2 47 500793877 500793922 1.520000e-09 75.0
85 TraesCS6A01G061800 chr5B 77.419 527 87 19 2085 2598 697094138 697093631 6.460000e-73 285.0
86 TraesCS6A01G061800 chr5B 95.745 47 2 0 1 47 631892436 631892390 4.230000e-10 76.8
87 TraesCS6A01G061800 chr5B 78.448 116 18 6 2015 2126 697029313 697029201 7.090000e-08 69.4
88 TraesCS6A01G061800 chr7D 93.122 189 8 5 1848 2032 24559183 24559370 5.030000e-69 272.0
89 TraesCS6A01G061800 chr7D 90.608 181 16 1 1670 1849 404628493 404628673 5.100000e-59 239.0
90 TraesCS6A01G061800 chr7D 90.278 144 13 1 138 281 603280860 603280718 1.880000e-43 187.0
91 TraesCS6A01G061800 chr7D 95.652 46 2 0 2 47 596074651 596074606 1.520000e-09 75.0
92 TraesCS6A01G061800 chr4D 92.593 189 9 5 1848 2032 38630693 38630506 2.340000e-67 267.0
93 TraesCS6A01G061800 chr4D 92.593 189 8 6 1848 2032 117267358 117267172 2.340000e-67 267.0
94 TraesCS6A01G061800 chr4D 92.105 190 13 2 1848 2037 361460001 361459814 2.340000e-67 267.0
95 TraesCS6A01G061800 chr4D 90.110 182 16 2 1668 1848 70853861 70853681 6.600000e-58 235.0
96 TraesCS6A01G061800 chr4D 92.424 66 3 2 284 347 416061646 416061581 4.200000e-15 93.5
97 TraesCS6A01G061800 chr1B 92.982 171 11 1 1678 1847 242176184 242176014 8.480000e-62 248.0
98 TraesCS6A01G061800 chr1B 93.452 168 9 2 1677 1843 268402865 268402699 8.480000e-62 248.0
99 TraesCS6A01G061800 chr1B 91.429 140 10 2 144 283 143854018 143853881 1.450000e-44 191.0
100 TraesCS6A01G061800 chr1B 95.161 62 1 2 283 342 310100745 310100684 3.250000e-16 97.1
101 TraesCS6A01G061800 chr7A 91.813 171 13 1 1677 1846 14918288 14918118 1.840000e-58 237.0
102 TraesCS6A01G061800 chr7A 87.879 132 13 3 3304 3433 32830833 32830703 6.840000e-33 152.0
103 TraesCS6A01G061800 chr7A 87.879 132 13 3 3304 3433 32846606 32846476 6.840000e-33 152.0
104 TraesCS6A01G061800 chr3B 90.164 183 15 3 1668 1849 377110983 377111163 6.600000e-58 235.0
105 TraesCS6A01G061800 chr3B 95.745 47 2 0 1 47 526693528 526693574 4.230000e-10 76.8
106 TraesCS6A01G061800 chr1A 85.915 142 5 4 138 279 552254344 552254218 1.920000e-28 137.0
107 TraesCS6A01G061800 chr1A 97.727 44 1 0 2 45 581838207 581838164 4.230000e-10 76.8
108 TraesCS6A01G061800 chr3A 95.161 62 2 1 284 344 625536835 625536774 3.250000e-16 97.1
109 TraesCS6A01G061800 chr3A 93.750 64 3 1 284 346 450010384 450010447 1.170000e-15 95.3
110 TraesCS6A01G061800 chr2B 95.161 62 1 2 283 342 184910772 184910833 3.250000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G061800 chr6A 33013707 33017658 3951 True 7299.000000 7299 100.000000 1 3952 1 chr6A.!!$R1 3951
1 TraesCS6A01G061800 chr6A 45413197 45414971 1774 True 779.000000 1127 83.382000 2009 3898 2 chr6A.!!$R4 1889
2 TraesCS6A01G061800 chr6A 33404903 33406135 1232 False 575.000000 725 83.631000 1007 2594 2 chr6A.!!$F5 1587
3 TraesCS6A01G061800 chr6A 33305902 33307930 2028 False 564.000000 723 84.902000 1007 3141 2 chr6A.!!$F4 2134
4 TraesCS6A01G061800 chr6A 33530560 33532462 1902 False 386.666667 664 85.320333 1007 3304 3 chr6A.!!$F6 2297
5 TraesCS6A01G061800 chr6A 33185684 33187598 1914 True 204.500000 222 79.173500 1161 3087 2 chr6A.!!$R3 1926
6 TraesCS6A01G061800 chr6B 78445521 78447166 1645 True 806.500000 1212 85.611000 2009 3795 2 chr6B.!!$R4 1786
7 TraesCS6A01G061800 chr6B 59825791 59828666 2875 True 740.000000 1445 92.440000 1007 3952 5 chr6B.!!$R1 2945
8 TraesCS6A01G061800 chr6B 60657826 60658403 577 False 676.000000 676 87.801000 1007 1586 1 chr6B.!!$F1 579
9 TraesCS6A01G061800 chr6B 60623580 60624714 1134 False 521.000000 678 85.507000 1007 3141 2 chr6B.!!$F5 2134
10 TraesCS6A01G061800 chr6B 60632329 60633840 1511 False 334.666667 416 88.417333 1007 3141 3 chr6B.!!$F6 2134
11 TraesCS6A01G061800 chr6B 78336418 78342350 5932 True 328.500000 444 83.703250 2083 3904 4 chr6B.!!$R3 1821
12 TraesCS6A01G061800 chr6B 78290974 78296731 5757 True 286.666667 309 83.727667 2083 3904 3 chr6B.!!$R2 1821
13 TraesCS6A01G061800 chrUn 112530318 112531948 1630 False 740.000000 1114 84.366500 2009 3785 2 chrUn.!!$F3 1776
14 TraesCS6A01G061800 chr6D 29378645 29379292 647 False 680.000000 680 85.714000 360 1005 1 chr6D.!!$F4 645
15 TraesCS6A01G061800 chr6D 29093365 29098050 4685 True 404.000000 665 84.929500 1007 3304 2 chr6D.!!$R5 2297
16 TraesCS6A01G061800 chr5B 697093631 697094138 507 True 285.000000 285 77.419000 2085 2598 1 chr5B.!!$R3 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 871 0.110056 CACGCACCAGAACAGCAATC 60.110 55.000 0.0 0.0 0.00 2.67 F
1005 1009 1.142965 CACACGCCCACCGATGATA 59.857 57.895 0.0 0.0 41.02 2.15 F
1911 5195 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 5176 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.0 0.00 4.61 R
2272 6115 2.173569 AGAAAAACTGGACTGCAGGTCT 59.826 45.455 19.93 0.0 43.97 3.85 R
3455 10935 0.036732 AAGCAAGGCAGGTCGATGAA 59.963 50.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.508721 ACTTCCTCCCTTTCTAAATATAAGTCT 57.491 33.333 0.00 0.00 0.00 3.24
64 65 7.969387 TCAATATTTTAGAGTGCGAAAATGC 57.031 32.000 0.00 0.00 38.94 3.56
65 66 7.761409 TCAATATTTTAGAGTGCGAAAATGCT 58.239 30.769 0.00 0.00 38.94 3.79
67 68 4.419522 TTTTAGAGTGCGAAAATGCTCC 57.580 40.909 0.00 0.00 35.36 4.70
68 69 2.760634 TAGAGTGCGAAAATGCTCCA 57.239 45.000 0.00 0.00 35.36 3.86
69 70 1.160137 AGAGTGCGAAAATGCTCCAC 58.840 50.000 0.00 0.00 35.36 4.02
70 71 0.169009 GAGTGCGAAAATGCTCCACC 59.831 55.000 0.00 0.00 35.36 4.61
71 72 0.250901 AGTGCGAAAATGCTCCACCT 60.251 50.000 0.00 0.00 35.36 4.00
72 73 1.003118 AGTGCGAAAATGCTCCACCTA 59.997 47.619 0.00 0.00 35.36 3.08
73 74 1.130561 GTGCGAAAATGCTCCACCTAC 59.869 52.381 0.00 0.00 35.36 3.18
74 75 0.373716 GCGAAAATGCTCCACCTACG 59.626 55.000 0.00 0.00 0.00 3.51
76 77 1.404986 CGAAAATGCTCCACCTACGGA 60.405 52.381 0.00 0.00 0.00 4.69
77 78 2.007608 GAAAATGCTCCACCTACGGAC 58.992 52.381 0.00 0.00 0.00 4.79
79 80 0.968901 AATGCTCCACCTACGGACGA 60.969 55.000 0.00 0.00 0.00 4.20
80 81 1.664321 ATGCTCCACCTACGGACGAC 61.664 60.000 0.00 0.00 0.00 4.34
81 82 2.338015 GCTCCACCTACGGACGACA 61.338 63.158 0.00 0.00 0.00 4.35
82 83 1.505353 CTCCACCTACGGACGACAC 59.495 63.158 0.00 0.00 0.00 3.67
84 85 1.975407 CCACCTACGGACGACACCT 60.975 63.158 0.00 0.00 0.00 4.00
86 87 0.449388 CACCTACGGACGACACCTAC 59.551 60.000 0.00 0.00 0.00 3.18
87 88 1.021390 ACCTACGGACGACACCTACG 61.021 60.000 0.00 0.00 0.00 3.51
88 89 1.709147 CCTACGGACGACACCTACGG 61.709 65.000 0.00 0.00 34.93 4.02
89 90 0.740868 CTACGGACGACACCTACGGA 60.741 60.000 0.00 0.00 34.93 4.69
90 91 0.321210 TACGGACGACACCTACGGAA 60.321 55.000 0.00 0.00 34.93 4.30
91 92 1.172180 ACGGACGACACCTACGGAAA 61.172 55.000 0.00 0.00 34.93 3.13
92 93 0.730494 CGGACGACACCTACGGAAAC 60.730 60.000 0.00 0.00 34.93 2.78
93 94 0.600057 GGACGACACCTACGGAAACT 59.400 55.000 0.00 0.00 34.93 2.66
97 98 1.135460 CGACACCTACGGAAACTCTCC 60.135 57.143 0.00 0.00 41.40 3.71
101 102 0.179134 CCTACGGAAACTCTCCTGCG 60.179 60.000 0.00 0.00 42.85 5.18
102 103 0.179134 CTACGGAAACTCTCCTGCGG 60.179 60.000 0.00 0.00 42.85 5.69
103 104 0.609957 TACGGAAACTCTCCTGCGGA 60.610 55.000 0.00 0.00 42.85 5.54
105 106 1.671742 GGAAACTCTCCTGCGGACA 59.328 57.895 0.00 0.00 41.61 4.02
106 107 0.390472 GGAAACTCTCCTGCGGACAG 60.390 60.000 0.00 0.00 41.61 3.51
115 116 2.031012 TGCGGACAGACTTGGCTG 59.969 61.111 1.33 1.33 42.03 4.85
125 126 4.319177 ACAGACTTGGCTGTGTCTAATTC 58.681 43.478 8.50 0.00 46.72 2.17
126 127 4.202357 ACAGACTTGGCTGTGTCTAATTCA 60.202 41.667 8.50 0.00 46.72 2.57
127 128 4.153117 CAGACTTGGCTGTGTCTAATTCAC 59.847 45.833 7.14 0.00 41.06 3.18
128 129 3.412386 ACTTGGCTGTGTCTAATTCACC 58.588 45.455 0.00 0.00 35.25 4.02
129 130 3.181445 ACTTGGCTGTGTCTAATTCACCA 60.181 43.478 0.00 0.00 35.25 4.17
132 133 3.003480 GGCTGTGTCTAATTCACCACTC 58.997 50.000 0.00 0.00 35.25 3.51
133 134 3.003480 GCTGTGTCTAATTCACCACTCC 58.997 50.000 0.00 0.00 35.25 3.85
134 135 3.307059 GCTGTGTCTAATTCACCACTCCT 60.307 47.826 0.00 0.00 35.25 3.69
135 136 4.499183 CTGTGTCTAATTCACCACTCCTC 58.501 47.826 0.00 0.00 35.25 3.71
136 137 3.260884 TGTGTCTAATTCACCACTCCTCC 59.739 47.826 0.00 0.00 35.25 4.30
137 138 2.838202 TGTCTAATTCACCACTCCTCCC 59.162 50.000 0.00 0.00 0.00 4.30
138 139 3.108376 GTCTAATTCACCACTCCTCCCT 58.892 50.000 0.00 0.00 0.00 4.20
139 140 3.133183 GTCTAATTCACCACTCCTCCCTC 59.867 52.174 0.00 0.00 0.00 4.30
140 141 1.290134 AATTCACCACTCCTCCCTCC 58.710 55.000 0.00 0.00 0.00 4.30
141 142 0.419459 ATTCACCACTCCTCCCTCCT 59.581 55.000 0.00 0.00 0.00 3.69
142 143 0.545309 TTCACCACTCCTCCCTCCTG 60.545 60.000 0.00 0.00 0.00 3.86
144 145 3.465403 CCACTCCTCCCTCCTGCG 61.465 72.222 0.00 0.00 0.00 5.18
145 146 3.465403 CACTCCTCCCTCCTGCGG 61.465 72.222 0.00 0.00 0.00 5.69
146 147 3.673597 ACTCCTCCCTCCTGCGGA 61.674 66.667 0.00 0.00 0.00 5.54
148 149 3.965026 CTCCTCCCTCCTGCGGACA 62.965 68.421 0.00 0.00 0.00 4.02
149 150 3.465403 CCTCCCTCCTGCGGACAG 61.465 72.222 0.00 0.00 44.05 3.51
158 159 3.985877 TGCGGACAGAATTGGCTG 58.014 55.556 0.00 0.00 42.03 4.85
161 162 2.034879 CGGACAGAATTGGCTGCGT 61.035 57.895 0.00 0.00 39.51 5.24
162 163 1.796796 GGACAGAATTGGCTGCGTC 59.203 57.895 0.00 0.00 39.51 5.19
163 164 0.674895 GGACAGAATTGGCTGCGTCT 60.675 55.000 0.00 0.00 39.51 4.18
164 165 1.405526 GGACAGAATTGGCTGCGTCTA 60.406 52.381 0.00 0.00 39.51 2.59
165 166 2.346803 GACAGAATTGGCTGCGTCTAA 58.653 47.619 0.00 0.00 39.51 2.10
167 168 3.347216 ACAGAATTGGCTGCGTCTAATT 58.653 40.909 0.00 0.00 39.51 1.40
168 169 3.375299 ACAGAATTGGCTGCGTCTAATTC 59.625 43.478 14.64 14.64 41.39 2.17
169 170 3.374988 CAGAATTGGCTGCGTCTAATTCA 59.625 43.478 20.55 1.49 42.64 2.57
170 171 3.375299 AGAATTGGCTGCGTCTAATTCAC 59.625 43.478 20.55 4.54 42.64 3.18
171 172 1.448985 TTGGCTGCGTCTAATTCACC 58.551 50.000 0.00 0.00 0.00 4.02
172 173 0.323302 TGGCTGCGTCTAATTCACCA 59.677 50.000 0.00 0.00 0.00 4.17
174 175 1.676014 GGCTGCGTCTAATTCACCACT 60.676 52.381 0.00 0.00 0.00 4.00
175 176 1.661112 GCTGCGTCTAATTCACCACTC 59.339 52.381 0.00 0.00 0.00 3.51
176 177 2.271800 CTGCGTCTAATTCACCACTCC 58.728 52.381 0.00 0.00 0.00 3.85
177 178 1.899814 TGCGTCTAATTCACCACTCCT 59.100 47.619 0.00 0.00 0.00 3.69
179 180 2.738964 GCGTCTAATTCACCACTCCTCC 60.739 54.545 0.00 0.00 0.00 4.30
180 181 2.159085 CGTCTAATTCACCACTCCTCCC 60.159 54.545 0.00 0.00 0.00 4.30
181 182 3.108376 GTCTAATTCACCACTCCTCCCT 58.892 50.000 0.00 0.00 0.00 4.20
182 183 3.107601 TCTAATTCACCACTCCTCCCTG 58.892 50.000 0.00 0.00 0.00 4.45
183 184 2.044793 AATTCACCACTCCTCCCTGA 57.955 50.000 0.00 0.00 0.00 3.86
184 185 2.044793 ATTCACCACTCCTCCCTGAA 57.955 50.000 0.00 0.00 0.00 3.02
185 186 2.044793 TTCACCACTCCTCCCTGAAT 57.955 50.000 0.00 0.00 0.00 2.57
187 188 2.348472 TCACCACTCCTCCCTGAATTT 58.652 47.619 0.00 0.00 0.00 1.82
201 202 1.177401 GAATTTCAGGTGTGGGGCTC 58.823 55.000 0.00 0.00 0.00 4.70
204 205 1.779061 TTTCAGGTGTGGGGCTCTCC 61.779 60.000 0.00 0.00 0.00 3.71
205 206 2.608988 CAGGTGTGGGGCTCTCCT 60.609 66.667 0.00 0.00 35.33 3.69
206 207 2.608988 AGGTGTGGGGCTCTCCTG 60.609 66.667 0.00 0.00 35.33 3.86
208 209 2.665603 GTGTGGGGCTCTCCTGTC 59.334 66.667 0.00 0.00 35.33 3.51
209 210 2.607750 TGTGGGGCTCTCCTGTCC 60.608 66.667 0.00 0.00 35.33 4.02
213 214 2.610859 GGGCTCTCCTGTCCCCAA 60.611 66.667 0.00 0.00 37.46 4.12
216 217 0.985490 GGCTCTCCTGTCCCCAATCT 60.985 60.000 0.00 0.00 0.00 2.40
217 218 1.692762 GGCTCTCCTGTCCCCAATCTA 60.693 57.143 0.00 0.00 0.00 1.98
218 219 2.119495 GCTCTCCTGTCCCCAATCTAA 58.881 52.381 0.00 0.00 0.00 2.10
219 220 2.708325 GCTCTCCTGTCCCCAATCTAAT 59.292 50.000 0.00 0.00 0.00 1.73
220 221 3.495806 GCTCTCCTGTCCCCAATCTAATG 60.496 52.174 0.00 0.00 0.00 1.90
221 222 3.969976 CTCTCCTGTCCCCAATCTAATGA 59.030 47.826 0.00 0.00 0.00 2.57
222 223 4.570926 TCTCCTGTCCCCAATCTAATGAT 58.429 43.478 0.00 0.00 33.70 2.45
223 224 4.349048 TCTCCTGTCCCCAATCTAATGATG 59.651 45.833 0.00 0.00 32.44 3.07
224 225 3.152341 CCTGTCCCCAATCTAATGATGC 58.848 50.000 0.00 0.00 32.44 3.91
225 226 3.152341 CTGTCCCCAATCTAATGATGCC 58.848 50.000 0.00 0.00 32.44 4.40
226 227 2.513317 TGTCCCCAATCTAATGATGCCA 59.487 45.455 0.00 0.00 32.44 4.92
227 228 2.887152 GTCCCCAATCTAATGATGCCAC 59.113 50.000 0.00 0.00 32.44 5.01
228 229 2.785269 TCCCCAATCTAATGATGCCACT 59.215 45.455 0.00 0.00 32.44 4.00
230 231 3.962718 CCCCAATCTAATGATGCCACTTT 59.037 43.478 0.00 0.00 32.44 2.66
231 232 4.038402 CCCCAATCTAATGATGCCACTTTC 59.962 45.833 0.00 0.00 32.44 2.62
235 236 6.444633 CAATCTAATGATGCCACTTTCATCC 58.555 40.000 0.00 0.00 39.54 3.51
236 237 4.129380 TCTAATGATGCCACTTTCATCCG 58.871 43.478 0.00 0.00 39.54 4.18
238 239 3.558931 ATGATGCCACTTTCATCCGTA 57.441 42.857 0.00 0.00 39.54 4.02
239 240 3.342377 TGATGCCACTTTCATCCGTAA 57.658 42.857 0.00 0.00 39.54 3.18
240 241 3.006940 TGATGCCACTTTCATCCGTAAC 58.993 45.455 0.00 0.00 39.54 2.50
243 244 2.007608 GCCACTTTCATCCGTAACCTC 58.992 52.381 0.00 0.00 0.00 3.85
244 245 2.629051 CCACTTTCATCCGTAACCTCC 58.371 52.381 0.00 0.00 0.00 4.30
247 248 2.844348 ACTTTCATCCGTAACCTCCCAT 59.156 45.455 0.00 0.00 0.00 4.00
248 249 3.118371 ACTTTCATCCGTAACCTCCCATC 60.118 47.826 0.00 0.00 0.00 3.51
249 250 1.420430 TCATCCGTAACCTCCCATCC 58.580 55.000 0.00 0.00 0.00 3.51
250 251 1.062428 TCATCCGTAACCTCCCATCCT 60.062 52.381 0.00 0.00 0.00 3.24
252 253 2.852714 TCCGTAACCTCCCATCCTTA 57.147 50.000 0.00 0.00 0.00 2.69
253 254 3.119009 TCCGTAACCTCCCATCCTTAA 57.881 47.619 0.00 0.00 0.00 1.85
254 255 3.452878 TCCGTAACCTCCCATCCTTAAA 58.547 45.455 0.00 0.00 0.00 1.52
256 257 4.289148 TCCGTAACCTCCCATCCTTAAAAA 59.711 41.667 0.00 0.00 0.00 1.94
285 286 5.869753 CTGTAAGTGTAGCATTGCTCTTT 57.130 39.130 15.81 8.05 40.44 2.52
286 287 6.968131 CTGTAAGTGTAGCATTGCTCTTTA 57.032 37.500 15.81 7.12 40.44 1.85
288 289 6.697395 TGTAAGTGTAGCATTGCTCTTTAGA 58.303 36.000 15.81 5.90 40.44 2.10
289 290 6.813649 TGTAAGTGTAGCATTGCTCTTTAGAG 59.186 38.462 15.81 2.33 44.75 2.43
301 302 5.114780 TGCTCTTTAGAGTGCAGATTCATC 58.885 41.667 5.96 0.00 44.78 2.92
302 303 5.114780 GCTCTTTAGAGTGCAGATTCATCA 58.885 41.667 8.45 0.00 43.85 3.07
304 305 6.260493 GCTCTTTAGAGTGCAGATTCATCATT 59.740 38.462 8.45 0.00 43.85 2.57
306 307 8.571461 TCTTTAGAGTGCAGATTCATCATTTT 57.429 30.769 0.00 0.00 0.00 1.82
307 308 8.456471 TCTTTAGAGTGCAGATTCATCATTTTG 58.544 33.333 0.00 0.00 0.00 2.44
308 309 4.995124 AGAGTGCAGATTCATCATTTTGC 58.005 39.130 0.00 0.00 0.00 3.68
309 310 4.705507 AGAGTGCAGATTCATCATTTTGCT 59.294 37.500 0.00 0.00 33.00 3.91
310 311 4.995124 AGTGCAGATTCATCATTTTGCTC 58.005 39.130 0.00 0.00 33.00 4.26
311 312 4.110482 GTGCAGATTCATCATTTTGCTCC 58.890 43.478 0.00 0.00 33.00 4.70
312 313 3.181494 TGCAGATTCATCATTTTGCTCCG 60.181 43.478 0.00 0.00 33.00 4.63
314 315 4.035558 GCAGATTCATCATTTTGCTCCGTA 59.964 41.667 0.00 0.00 0.00 4.02
316 317 6.140786 CAGATTCATCATTTTGCTCCGTATG 58.859 40.000 0.00 0.00 0.00 2.39
317 318 5.824624 AGATTCATCATTTTGCTCCGTATGT 59.175 36.000 0.00 0.00 0.00 2.29
318 319 6.992123 AGATTCATCATTTTGCTCCGTATGTA 59.008 34.615 0.00 0.00 0.00 2.29
319 320 6.603237 TTCATCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
320 321 5.670485 TCATCATTTTGCTCCGTATGTAGT 58.330 37.500 0.00 0.00 0.00 2.73
321 322 5.753438 TCATCATTTTGCTCCGTATGTAGTC 59.247 40.000 0.00 0.00 0.00 2.59
322 323 5.339008 TCATTTTGCTCCGTATGTAGTCT 57.661 39.130 0.00 0.00 0.00 3.24
323 324 6.459670 TCATTTTGCTCCGTATGTAGTCTA 57.540 37.500 0.00 0.00 0.00 2.59
325 326 8.173542 TCATTTTGCTCCGTATGTAGTCTATA 57.826 34.615 0.00 0.00 0.00 1.31
326 327 8.803235 TCATTTTGCTCCGTATGTAGTCTATAT 58.197 33.333 0.00 0.00 0.00 0.86
328 329 8.812147 TTTTGCTCCGTATGTAGTCTATATTG 57.188 34.615 0.00 0.00 0.00 1.90
329 330 7.754851 TTGCTCCGTATGTAGTCTATATTGA 57.245 36.000 0.00 0.00 0.00 2.57
333 334 9.291664 GCTCCGTATGTAGTCTATATTGAAATC 57.708 37.037 0.00 0.00 0.00 2.17
435 436 0.177604 GAGCTCATCTGTCCACCCAG 59.822 60.000 9.40 0.00 0.00 4.45
442 443 1.606601 CTGTCCACCCAGTCTCCGA 60.607 63.158 0.00 0.00 0.00 4.55
445 446 1.685765 TCCACCCAGTCTCCGATGG 60.686 63.158 0.00 0.00 36.27 3.51
508 509 0.531200 GTGGGTGAGGAGGTAGTTCG 59.469 60.000 0.00 0.00 0.00 3.95
511 512 2.225091 TGGGTGAGGAGGTAGTTCGTAA 60.225 50.000 0.00 0.00 0.00 3.18
546 547 3.181487 CCGACAACATTTCATGGGGATTC 60.181 47.826 0.00 0.00 33.60 2.52
557 558 2.323999 TGGGGATTCTGTTGCCATTT 57.676 45.000 0.00 0.00 0.00 2.32
581 582 3.069778 AGGTGCCCTCGACCTTTC 58.930 61.111 0.00 0.00 41.31 2.62
617 618 1.678970 GCTAGGGGGCTTTGTGGTG 60.679 63.158 0.00 0.00 0.00 4.17
619 620 1.776710 TAGGGGGCTTTGTGGTGGT 60.777 57.895 0.00 0.00 0.00 4.16
620 621 1.365105 TAGGGGGCTTTGTGGTGGTT 61.365 55.000 0.00 0.00 0.00 3.67
623 624 1.639722 GGGGCTTTGTGGTGGTTAAT 58.360 50.000 0.00 0.00 0.00 1.40
625 626 2.370519 GGGGCTTTGTGGTGGTTAATTT 59.629 45.455 0.00 0.00 0.00 1.82
627 628 4.456535 GGGCTTTGTGGTGGTTAATTTTT 58.543 39.130 0.00 0.00 0.00 1.94
652 653 6.525578 TGTGAGTAAACATCCGATCTAGTT 57.474 37.500 0.00 0.00 0.00 2.24
654 655 7.704271 TGTGAGTAAACATCCGATCTAGTTAG 58.296 38.462 0.00 0.00 0.00 2.34
666 667 6.265422 TCCGATCTAGTTAGCTTCAATCATGA 59.735 38.462 0.00 0.00 0.00 3.07
675 676 5.869753 AGCTTCAATCATGACAGTACAAC 57.130 39.130 0.00 0.00 34.61 3.32
676 677 4.389992 AGCTTCAATCATGACAGTACAACG 59.610 41.667 0.00 0.00 34.61 4.10
681 682 5.931724 TCAATCATGACAGTACAACGAACAT 59.068 36.000 0.00 0.00 0.00 2.71
682 683 6.426633 TCAATCATGACAGTACAACGAACATT 59.573 34.615 0.00 0.00 0.00 2.71
724 725 3.012502 TCCAGGTTCATAGACCACCTAGT 59.987 47.826 0.00 0.00 39.01 2.57
739 740 4.177026 CACCTAGTGATGACTACAAGCAC 58.823 47.826 0.00 0.00 35.23 4.40
746 747 2.169832 TGACTACAAGCACTGAAGCC 57.830 50.000 0.00 0.00 34.23 4.35
757 758 1.784062 CTGAAGCCAGTCGAAAGCG 59.216 57.895 0.00 0.00 35.70 4.68
759 760 2.280797 AAGCCAGTCGAAAGCGCA 60.281 55.556 11.47 0.00 37.46 6.09
784 785 2.202932 CATCGCCCCTTCCTCACG 60.203 66.667 0.00 0.00 0.00 4.35
789 790 3.787001 CCCCTTCCTCACGGGAGC 61.787 72.222 9.89 0.00 46.01 4.70
790 791 3.003173 CCCTTCCTCACGGGAGCA 61.003 66.667 9.89 0.00 46.01 4.26
791 792 2.370445 CCCTTCCTCACGGGAGCAT 61.370 63.158 9.89 0.00 46.01 3.79
793 794 1.153289 CTTCCTCACGGGAGCATGG 60.153 63.158 9.89 0.00 46.01 3.66
804 807 1.606224 GGGAGCATGGCAAACTTGTTG 60.606 52.381 0.00 0.00 0.00 3.33
814 817 5.373222 TGGCAAACTTGTTGTAGTAGACAT 58.627 37.500 0.00 0.00 38.07 3.06
817 820 6.017440 GGCAAACTTGTTGTAGTAGACATTCA 60.017 38.462 0.00 0.00 38.07 2.57
825 828 6.266786 TGTTGTAGTAGACATTCAGGAAGTCA 59.733 38.462 11.46 0.00 38.07 3.41
837 840 3.776969 TCAGGAAGTCATCATGCTAAGGT 59.223 43.478 0.00 0.00 39.66 3.50
838 841 4.225942 TCAGGAAGTCATCATGCTAAGGTT 59.774 41.667 0.00 0.00 39.66 3.50
839 842 4.574013 CAGGAAGTCATCATGCTAAGGTTC 59.426 45.833 0.00 0.00 32.40 3.62
849 852 2.124411 TGCTAAGGTTCCATAGGACCC 58.876 52.381 3.79 0.00 34.21 4.46
853 856 1.153229 GGTTCCATAGGACCCACGC 60.153 63.158 0.00 0.00 34.18 5.34
855 858 0.743345 GTTCCATAGGACCCACGCAC 60.743 60.000 0.00 0.00 0.00 5.34
867 870 1.518056 CCACGCACCAGAACAGCAAT 61.518 55.000 0.00 0.00 0.00 3.56
868 871 0.110056 CACGCACCAGAACAGCAATC 60.110 55.000 0.00 0.00 0.00 2.67
886 889 1.517257 CGCCGCTGGTGAAGAGTAG 60.517 63.158 2.49 0.00 34.74 2.57
895 898 4.682859 GCTGGTGAAGAGTAGCATTGATCT 60.683 45.833 0.00 0.00 36.24 2.75
920 923 2.480419 GGATTCAACCTGAAGACACACG 59.520 50.000 0.00 0.00 40.05 4.49
934 937 4.114073 AGACACACGAACATAAACGAACA 58.886 39.130 0.00 0.00 0.00 3.18
942 945 4.956778 CGAACATAAACGAACAACGAACAA 59.043 37.500 0.00 0.00 45.77 2.83
946 949 5.910723 ACATAAACGAACAACGAACAAATCC 59.089 36.000 0.00 0.00 45.77 3.01
958 961 3.181497 CGAACAAATCCGAGCAAATCCAT 60.181 43.478 0.00 0.00 0.00 3.41
964 967 2.368439 TCCGAGCAAATCCATCAAAGG 58.632 47.619 0.00 0.00 0.00 3.11
1005 1009 1.142965 CACACGCCCACCGATGATA 59.857 57.895 0.00 0.00 41.02 2.15
1012 4115 1.414919 GCCCACCGATGATACTGGTTA 59.585 52.381 0.00 0.00 32.48 2.85
1068 4177 3.026694 GGGTGGGATCCTTGAATTTGAG 58.973 50.000 12.58 0.00 0.00 3.02
1087 4196 6.560003 TTGAGATGGATAGGCAAAGACTAA 57.440 37.500 0.00 0.00 0.00 2.24
1088 4197 6.753913 TGAGATGGATAGGCAAAGACTAAT 57.246 37.500 0.00 0.00 0.00 1.73
1172 4287 2.555227 GCCTTGGAATTGGTCTCCTCAA 60.555 50.000 0.00 0.00 33.77 3.02
1384 4643 2.668457 GTCATGTTACAGCTTGAGTCGG 59.332 50.000 0.00 0.00 0.00 4.79
1426 4685 3.006940 GGAACCAACATCATCGCTTACA 58.993 45.455 0.00 0.00 0.00 2.41
1606 4874 3.499338 TGTGGCTTGATGACCTTTCAAT 58.501 40.909 0.00 0.00 34.61 2.57
1662 4945 1.210931 CTTGCATGCCACGGTCTTG 59.789 57.895 16.68 0.00 0.00 3.02
1680 4964 9.909644 ACGGTCTTGTGTAATATTATGATCTAC 57.090 33.333 0.00 0.00 0.00 2.59
1688 4972 9.737427 GTGTAATATTATGATCTACTCCATCCG 57.263 37.037 0.00 0.00 0.00 4.18
1689 4973 9.475620 TGTAATATTATGATCTACTCCATCCGT 57.524 33.333 0.00 0.00 0.00 4.69
1692 4976 8.830915 ATATTATGATCTACTCCATCCGTTCT 57.169 34.615 0.00 0.00 0.00 3.01
1693 4977 6.978674 TTATGATCTACTCCATCCGTTCTT 57.021 37.500 0.00 0.00 0.00 2.52
1694 4978 8.651589 ATTATGATCTACTCCATCCGTTCTTA 57.348 34.615 0.00 0.00 0.00 2.10
1695 4979 6.978674 ATGATCTACTCCATCCGTTCTTAA 57.021 37.500 0.00 0.00 0.00 1.85
1696 4980 6.785337 TGATCTACTCCATCCGTTCTTAAA 57.215 37.500 0.00 0.00 0.00 1.52
1697 4981 7.361457 TGATCTACTCCATCCGTTCTTAAAT 57.639 36.000 0.00 0.00 0.00 1.40
1698 4982 8.473358 TGATCTACTCCATCCGTTCTTAAATA 57.527 34.615 0.00 0.00 0.00 1.40
1700 4984 9.930693 GATCTACTCCATCCGTTCTTAAATATT 57.069 33.333 0.00 0.00 0.00 1.28
1702 4986 9.542462 TCTACTCCATCCGTTCTTAAATATTTG 57.458 33.333 11.05 0.00 0.00 2.32
1704 4988 8.209917 ACTCCATCCGTTCTTAAATATTTGTC 57.790 34.615 11.05 0.00 0.00 3.18
1705 4989 8.047310 ACTCCATCCGTTCTTAAATATTTGTCT 58.953 33.333 11.05 0.00 0.00 3.41
1706 4990 8.801882 TCCATCCGTTCTTAAATATTTGTCTT 57.198 30.769 11.05 0.00 0.00 3.01
1707 4991 9.238368 TCCATCCGTTCTTAAATATTTGTCTTT 57.762 29.630 11.05 0.00 0.00 2.52
1708 4992 9.503427 CCATCCGTTCTTAAATATTTGTCTTTC 57.497 33.333 11.05 0.00 0.00 2.62
1736 5020 9.212641 AGTCATTTCAAATAGATATCACATCCG 57.787 33.333 5.32 0.00 0.00 4.18
1737 5021 9.208022 GTCATTTCAAATAGATATCACATCCGA 57.792 33.333 5.32 0.00 0.00 4.55
1738 5022 9.777297 TCATTTCAAATAGATATCACATCCGAA 57.223 29.630 5.32 2.38 0.00 4.30
1748 5032 8.581253 AGATATCACATCCGAATGTATGTAGA 57.419 34.615 5.32 0.00 44.41 2.59
1749 5033 8.462811 AGATATCACATCCGAATGTATGTAGAC 58.537 37.037 5.32 0.00 44.41 2.59
1750 5034 5.845391 TCACATCCGAATGTATGTAGACA 57.155 39.130 0.00 0.00 44.41 3.41
1751 5035 6.405278 TCACATCCGAATGTATGTAGACAT 57.595 37.500 0.08 0.08 44.41 3.06
1752 5036 7.519032 TCACATCCGAATGTATGTAGACATA 57.481 36.000 0.00 0.00 44.41 2.29
1753 5037 8.122472 TCACATCCGAATGTATGTAGACATAT 57.878 34.615 5.69 0.00 44.41 1.78
1754 5038 8.585018 TCACATCCGAATGTATGTAGACATATT 58.415 33.333 5.69 0.00 44.41 1.28
1755 5039 9.208022 CACATCCGAATGTATGTAGACATATTT 57.792 33.333 5.69 3.75 44.41 1.40
1756 5040 9.778741 ACATCCGAATGTATGTAGACATATTTT 57.221 29.630 5.69 3.44 44.38 1.82
1783 5067 9.323985 AGAGTATAGATTCACTCATTTTGCTTC 57.676 33.333 4.70 0.00 42.99 3.86
1784 5068 8.136057 AGTATAGATTCACTCATTTTGCTTCG 57.864 34.615 0.00 0.00 0.00 3.79
1785 5069 6.992063 ATAGATTCACTCATTTTGCTTCGT 57.008 33.333 0.00 0.00 0.00 3.85
1786 5070 9.031360 GTATAGATTCACTCATTTTGCTTCGTA 57.969 33.333 0.00 0.00 0.00 3.43
1787 5071 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
1788 5072 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
1789 5073 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
1790 5074 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
1791 5075 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
1792 5076 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
1793 5077 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
1794 5078 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
1795 5079 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
1796 5080 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
1797 5081 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
1798 5082 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
1799 5083 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
1800 5084 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
1801 5085 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
1802 5086 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
1803 5087 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
1804 5088 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
1805 5089 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
1806 5090 9.135843 CTTCGTATGTAGTCACTTGTTGAAATA 57.864 33.333 0.00 0.00 35.39 1.40
1807 5091 9.647797 TTCGTATGTAGTCACTTGTTGAAATAT 57.352 29.630 0.00 0.00 35.39 1.28
1808 5092 9.297586 TCGTATGTAGTCACTTGTTGAAATATC 57.702 33.333 0.00 0.00 35.39 1.63
1809 5093 9.302345 CGTATGTAGTCACTTGTTGAAATATCT 57.698 33.333 0.00 0.00 35.39 1.98
1818 5102 9.996554 TCACTTGTTGAAATATCTAGAAAGACA 57.003 29.630 0.00 0.00 33.57 3.41
1838 5122 6.954232 AGACAAATATTTAGGAACGAAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
1841 5125 7.854337 ACAAATATTTAGGAACGAAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
1847 5131 6.616237 TTAGGAACGAAGGGAGTAGAAAAT 57.384 37.500 0.00 0.00 0.00 1.82
1862 5146 5.720520 AGTAGAAAATACTCCCTCCGTTTCT 59.279 40.000 0.00 0.00 38.50 2.52
1868 5152 9.557061 GAAAATACTCCCTCCGTTTCTAAATAT 57.443 33.333 0.00 0.00 0.00 1.28
1874 5158 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
1875 5159 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
1901 5185 7.967890 GTAGAGATTCTACTAGGTGGACTAC 57.032 44.000 8.60 0.00 44.45 2.73
1902 5186 6.578313 AGAGATTCTACTAGGTGGACTACA 57.422 41.667 0.00 0.00 0.00 2.74
1903 5187 7.156694 AGAGATTCTACTAGGTGGACTACAT 57.843 40.000 0.00 0.00 0.00 2.29
1906 5190 6.935771 AGATTCTACTAGGTGGACTACATACG 59.064 42.308 0.00 0.00 0.00 3.06
1907 5191 4.965814 TCTACTAGGTGGACTACATACGG 58.034 47.826 0.00 0.00 0.00 4.02
1909 5193 3.818180 ACTAGGTGGACTACATACGGAG 58.182 50.000 0.00 0.00 0.00 4.63
1911 5195 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
1914 5198 3.592059 GTGGACTACATACGGAGCAAAA 58.408 45.455 0.00 0.00 0.00 2.44
1915 5199 4.189231 GTGGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
1916 5200 5.353938 GTGGACTACATACGGAGCAAAATA 58.646 41.667 0.00 0.00 0.00 1.40
1917 5201 5.462398 GTGGACTACATACGGAGCAAAATAG 59.538 44.000 0.00 0.00 0.00 1.73
1918 5202 5.361571 TGGACTACATACGGAGCAAAATAGA 59.638 40.000 0.00 0.00 0.00 1.98
1919 5203 6.041637 TGGACTACATACGGAGCAAAATAGAT 59.958 38.462 0.00 0.00 0.00 1.98
1920 5204 6.366332 GGACTACATACGGAGCAAAATAGATG 59.634 42.308 0.00 0.00 0.00 2.90
1921 5205 7.050970 ACTACATACGGAGCAAAATAGATGA 57.949 36.000 0.00 0.00 0.00 2.92
1925 5209 7.220030 ACATACGGAGCAAAATAGATGAATCT 58.780 34.615 0.00 0.00 40.86 2.40
1926 5210 8.367911 ACATACGGAGCAAAATAGATGAATCTA 58.632 33.333 2.59 2.59 43.00 1.98
1927 5211 8.651588 CATACGGAGCAAAATAGATGAATCTAC 58.348 37.037 2.15 0.00 41.77 2.59
1928 5212 6.582636 ACGGAGCAAAATAGATGAATCTACA 58.417 36.000 2.15 0.00 41.77 2.74
1929 5213 6.480320 ACGGAGCAAAATAGATGAATCTACAC 59.520 38.462 2.15 0.00 41.77 2.90
1930 5214 6.703607 CGGAGCAAAATAGATGAATCTACACT 59.296 38.462 2.15 0.00 41.77 3.55
1931 5215 7.225538 CGGAGCAAAATAGATGAATCTACACTT 59.774 37.037 2.15 0.00 41.77 3.16
1932 5216 9.547753 GGAGCAAAATAGATGAATCTACACTTA 57.452 33.333 2.15 0.00 41.77 2.24
1942 5226 9.624373 AGATGAATCTACACTTAAAATGCATCT 57.376 29.630 0.00 0.00 34.85 2.90
1954 5238 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
1959 5243 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
1960 5244 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
1961 5245 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
1962 5246 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
1964 5248 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
1966 5250 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
1967 5251 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
1968 5252 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
1969 5253 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
1970 5254 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
1972 5256 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
1973 5257 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
1974 5258 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
1975 5259 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
1978 5262 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
1981 5265 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
1982 5266 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
1988 5272 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
2230 5978 3.492421 AATTTGACTATTGCCTGCGTG 57.508 42.857 0.00 0.00 0.00 5.34
2269 6112 6.780457 ATTGAATGGTTTTAGTGCATAGCT 57.220 33.333 0.00 0.00 0.00 3.32
2270 6113 5.565592 TGAATGGTTTTAGTGCATAGCTG 57.434 39.130 0.00 0.00 0.00 4.24
2524 8197 5.023452 TCACTTTTATGAGAGTCCCTGCTA 58.977 41.667 0.00 0.00 0.00 3.49
2548 8221 6.296026 ACAAGTAGCAAGTCATTTTCTACCA 58.704 36.000 0.00 0.00 32.31 3.25
2549 8222 6.204882 ACAAGTAGCAAGTCATTTTCTACCAC 59.795 38.462 0.00 0.00 32.31 4.16
2595 8271 6.651755 TCGTTTTAGGCTAAATTTACTCGG 57.348 37.500 19.65 4.47 0.00 4.63
2768 8616 8.736751 TGGTTTTATTTATCTTTTCTTCGTGC 57.263 30.769 0.00 0.00 0.00 5.34
2956 8819 6.899393 TCTTTTGCACAGGACATAAGATTT 57.101 33.333 0.00 0.00 32.46 2.17
3102 10032 3.094484 AGTACAAGAGAGGACCCAGAG 57.906 52.381 0.00 0.00 0.00 3.35
3169 10644 2.506061 CGCTCTCCTGGCAGGCTAT 61.506 63.158 29.02 0.00 34.61 2.97
3170 10645 1.835693 GCTCTCCTGGCAGGCTATT 59.164 57.895 29.02 0.00 34.61 1.73
3232 10710 3.815856 TTAGCAGCTCTCCATTCTCTG 57.184 47.619 0.00 0.00 0.00 3.35
3233 10711 1.570803 AGCAGCTCTCCATTCTCTGT 58.429 50.000 0.00 0.00 0.00 3.41
3298 10776 2.454772 TCTGCCCCCTCTCTATTGGATA 59.545 50.000 0.00 0.00 0.00 2.59
3305 10783 4.161942 CCCCTCTCTATTGGATATGCTCAG 59.838 50.000 0.00 0.00 0.00 3.35
3310 10788 1.888215 ATTGGATATGCTCAGTGGCG 58.112 50.000 0.00 0.00 34.52 5.69
3375 10853 2.945904 TTGGGGCAGGCCAATCCAT 61.946 57.895 16.36 0.00 37.98 3.41
3406 10886 7.867445 ACACCATTTTAGCAGAAAAATAACG 57.133 32.000 1.23 0.00 37.03 3.18
3454 10934 6.566197 ATTAGTGCTCTTTCACTTTCCTTG 57.434 37.500 1.55 0.00 44.26 3.61
3455 10935 3.891049 AGTGCTCTTTCACTTTCCTTGT 58.109 40.909 0.00 0.00 44.26 3.16
3457 10937 4.336713 AGTGCTCTTTCACTTTCCTTGTTC 59.663 41.667 0.00 0.00 44.26 3.18
3458 10938 4.096382 GTGCTCTTTCACTTTCCTTGTTCA 59.904 41.667 0.00 0.00 34.29 3.18
3460 10940 5.009010 TGCTCTTTCACTTTCCTTGTTCATC 59.991 40.000 0.00 0.00 0.00 2.92
3461 10941 5.673337 TCTTTCACTTTCCTTGTTCATCG 57.327 39.130 0.00 0.00 0.00 3.84
3463 10943 5.236478 TCTTTCACTTTCCTTGTTCATCGAC 59.764 40.000 0.00 0.00 0.00 4.20
3465 10945 3.071023 TCACTTTCCTTGTTCATCGACCT 59.929 43.478 0.00 0.00 0.00 3.85
3484 11144 1.541588 CTGCCTTGCTTTCAGTTACCC 59.458 52.381 0.00 0.00 0.00 3.69
3547 11220 4.339748 TCTCTGCTGACTGATGACTTAGT 58.660 43.478 0.00 0.00 0.00 2.24
3563 11237 4.994282 ACTTAGTACCCTTCCCCTTTTTG 58.006 43.478 0.00 0.00 0.00 2.44
3578 11252 4.083908 CCCTTTTTGTGCATATGTTTGTGC 60.084 41.667 4.29 0.00 40.14 4.57
3612 12985 7.512130 AGATGAGAATGATGCCATGTTTAGTA 58.488 34.615 0.00 0.00 32.36 1.82
3696 13069 4.255301 ACCATTTGCTACATTGCATTTGG 58.745 39.130 13.16 13.16 44.21 3.28
3820 13206 3.072768 ACCATTTGCCCATTTCACATTGT 59.927 39.130 0.00 0.00 0.00 2.71
3854 13253 8.786826 TTTGGTACCTAGTGAAATAATGACTG 57.213 34.615 14.36 0.00 0.00 3.51
3876 13275 3.308323 GCTACAGTACTTGAAGAGCATGC 59.692 47.826 10.51 10.51 33.63 4.06
3920 13323 5.046520 ACACCCTCTGTTCCTAATGTAAGAC 60.047 44.000 0.00 0.00 0.00 3.01
3927 13330 7.857569 TCTGTTCCTAATGTAAGACGTTTTTG 58.142 34.615 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.508721 AGACTTATATTTAGAAAGGGAGGAAGT 57.491 33.333 0.00 0.00 0.00 3.01
41 42 7.166473 GGAGCATTTTCGCACTCTAAAATATTG 59.834 37.037 0.00 0.00 34.40 1.90
42 43 7.148086 TGGAGCATTTTCGCACTCTAAAATATT 60.148 33.333 0.00 0.00 34.40 1.28
43 44 6.318648 TGGAGCATTTTCGCACTCTAAAATAT 59.681 34.615 0.00 0.00 34.40 1.28
44 45 5.645929 TGGAGCATTTTCGCACTCTAAAATA 59.354 36.000 0.00 0.00 34.40 1.40
45 46 4.458989 TGGAGCATTTTCGCACTCTAAAAT 59.541 37.500 0.00 0.00 36.08 1.82
46 47 3.818210 TGGAGCATTTTCGCACTCTAAAA 59.182 39.130 0.00 0.00 0.00 1.52
47 48 3.188460 GTGGAGCATTTTCGCACTCTAAA 59.812 43.478 0.00 0.00 0.00 1.85
48 49 2.742053 GTGGAGCATTTTCGCACTCTAA 59.258 45.455 0.00 0.00 0.00 2.10
49 50 2.346803 GTGGAGCATTTTCGCACTCTA 58.653 47.619 0.00 0.00 0.00 2.43
51 52 0.169009 GGTGGAGCATTTTCGCACTC 59.831 55.000 0.00 0.00 0.00 3.51
52 53 0.250901 AGGTGGAGCATTTTCGCACT 60.251 50.000 0.00 0.00 0.00 4.40
53 54 1.130561 GTAGGTGGAGCATTTTCGCAC 59.869 52.381 0.00 0.00 0.00 5.34
97 98 2.031516 CAGCCAAGTCTGTCCGCAG 61.032 63.158 0.00 0.00 43.87 5.18
101 102 0.394565 AGACACAGCCAAGTCTGTCC 59.605 55.000 2.16 0.00 44.81 4.02
102 103 3.386768 TTAGACACAGCCAAGTCTGTC 57.613 47.619 11.50 0.00 44.81 3.51
105 106 4.319177 GTGAATTAGACACAGCCAAGTCT 58.681 43.478 7.55 7.55 46.19 3.24
106 107 3.437049 GGTGAATTAGACACAGCCAAGTC 59.563 47.826 0.00 0.00 39.65 3.01
107 108 3.181445 TGGTGAATTAGACACAGCCAAGT 60.181 43.478 0.00 0.00 39.65 3.16
108 109 3.189287 GTGGTGAATTAGACACAGCCAAG 59.811 47.826 0.00 0.00 39.65 3.61
109 110 3.146066 GTGGTGAATTAGACACAGCCAA 58.854 45.455 0.00 0.00 39.65 4.52
110 111 2.371841 AGTGGTGAATTAGACACAGCCA 59.628 45.455 0.00 0.00 39.65 4.75
111 112 3.003480 GAGTGGTGAATTAGACACAGCC 58.997 50.000 0.00 0.00 39.65 4.85
112 113 3.003480 GGAGTGGTGAATTAGACACAGC 58.997 50.000 0.00 0.00 39.65 4.40
113 114 4.499183 GAGGAGTGGTGAATTAGACACAG 58.501 47.826 0.00 0.00 39.65 3.66
114 115 3.260884 GGAGGAGTGGTGAATTAGACACA 59.739 47.826 0.00 0.00 39.65 3.72
115 116 3.369576 GGGAGGAGTGGTGAATTAGACAC 60.370 52.174 0.00 0.00 37.51 3.67
117 118 3.108376 AGGGAGGAGTGGTGAATTAGAC 58.892 50.000 0.00 0.00 0.00 2.59
118 119 3.375699 GAGGGAGGAGTGGTGAATTAGA 58.624 50.000 0.00 0.00 0.00 2.10
119 120 2.436173 GGAGGGAGGAGTGGTGAATTAG 59.564 54.545 0.00 0.00 0.00 1.73
120 121 2.045885 AGGAGGGAGGAGTGGTGAATTA 59.954 50.000 0.00 0.00 0.00 1.40
121 122 1.203492 AGGAGGGAGGAGTGGTGAATT 60.203 52.381 0.00 0.00 0.00 2.17
122 123 0.419459 AGGAGGGAGGAGTGGTGAAT 59.581 55.000 0.00 0.00 0.00 2.57
125 126 2.664081 GCAGGAGGGAGGAGTGGTG 61.664 68.421 0.00 0.00 0.00 4.17
126 127 2.284995 GCAGGAGGGAGGAGTGGT 60.285 66.667 0.00 0.00 0.00 4.16
127 128 3.465403 CGCAGGAGGGAGGAGTGG 61.465 72.222 0.00 0.00 0.00 4.00
140 141 1.798735 CAGCCAATTCTGTCCGCAG 59.201 57.895 0.00 0.00 43.87 5.18
141 142 2.334946 GCAGCCAATTCTGTCCGCA 61.335 57.895 0.00 0.00 36.49 5.69
142 143 2.486966 GCAGCCAATTCTGTCCGC 59.513 61.111 0.00 0.00 36.49 5.54
144 145 0.674895 AGACGCAGCCAATTCTGTCC 60.675 55.000 0.00 0.00 36.49 4.02
145 146 2.010145 TAGACGCAGCCAATTCTGTC 57.990 50.000 0.00 0.00 36.49 3.51
146 147 2.472695 TTAGACGCAGCCAATTCTGT 57.527 45.000 0.00 0.00 36.49 3.41
148 149 3.375299 GTGAATTAGACGCAGCCAATTCT 59.625 43.478 13.44 3.18 37.94 2.40
149 150 3.487544 GGTGAATTAGACGCAGCCAATTC 60.488 47.826 8.47 8.47 37.71 2.17
150 151 2.423538 GGTGAATTAGACGCAGCCAATT 59.576 45.455 0.00 0.00 0.00 2.32
156 157 2.093973 AGGAGTGGTGAATTAGACGCAG 60.094 50.000 0.00 0.00 0.00 5.18
158 159 2.541556 GAGGAGTGGTGAATTAGACGC 58.458 52.381 0.00 0.00 0.00 5.19
159 160 2.159085 GGGAGGAGTGGTGAATTAGACG 60.159 54.545 0.00 0.00 0.00 4.18
161 162 3.107601 CAGGGAGGAGTGGTGAATTAGA 58.892 50.000 0.00 0.00 0.00 2.10
162 163 3.107601 TCAGGGAGGAGTGGTGAATTAG 58.892 50.000 0.00 0.00 0.00 1.73
163 164 3.199442 TCAGGGAGGAGTGGTGAATTA 57.801 47.619 0.00 0.00 0.00 1.40
164 165 2.044793 TCAGGGAGGAGTGGTGAATT 57.955 50.000 0.00 0.00 0.00 2.17
165 166 2.044793 TTCAGGGAGGAGTGGTGAAT 57.955 50.000 0.00 0.00 0.00 2.57
167 168 2.044793 AATTCAGGGAGGAGTGGTGA 57.955 50.000 0.00 0.00 0.00 4.02
168 169 2.040278 TGAAATTCAGGGAGGAGTGGTG 59.960 50.000 0.00 0.00 0.00 4.17
169 170 2.307098 CTGAAATTCAGGGAGGAGTGGT 59.693 50.000 14.85 0.00 40.71 4.16
170 171 2.996631 CTGAAATTCAGGGAGGAGTGG 58.003 52.381 14.85 0.00 40.71 4.00
180 181 0.890683 GCCCCACACCTGAAATTCAG 59.109 55.000 15.64 15.64 43.91 3.02
181 182 0.482446 AGCCCCACACCTGAAATTCA 59.518 50.000 0.00 0.00 0.00 2.57
182 183 1.177401 GAGCCCCACACCTGAAATTC 58.823 55.000 0.00 0.00 0.00 2.17
183 184 0.779997 AGAGCCCCACACCTGAAATT 59.220 50.000 0.00 0.00 0.00 1.82
184 185 0.329596 GAGAGCCCCACACCTGAAAT 59.670 55.000 0.00 0.00 0.00 2.17
185 186 1.761174 GAGAGCCCCACACCTGAAA 59.239 57.895 0.00 0.00 0.00 2.69
187 188 2.607750 GGAGAGCCCCACACCTGA 60.608 66.667 0.00 0.00 0.00 3.86
191 192 2.665603 GACAGGAGAGCCCCACAC 59.334 66.667 0.00 0.00 34.66 3.82
196 197 1.988982 GATTGGGGACAGGAGAGCCC 61.989 65.000 0.00 0.00 44.54 5.19
197 198 0.985490 AGATTGGGGACAGGAGAGCC 60.985 60.000 0.00 0.00 44.54 4.70
201 202 4.649692 CATCATTAGATTGGGGACAGGAG 58.350 47.826 0.00 0.00 44.54 3.69
204 205 3.152341 GGCATCATTAGATTGGGGACAG 58.848 50.000 0.00 0.00 44.54 3.51
205 206 2.513317 TGGCATCATTAGATTGGGGACA 59.487 45.455 0.00 0.00 39.83 4.02
206 207 2.887152 GTGGCATCATTAGATTGGGGAC 59.113 50.000 0.00 0.00 30.20 4.46
208 209 3.234234 AGTGGCATCATTAGATTGGGG 57.766 47.619 0.00 0.00 30.20 4.96
209 210 4.646040 TGAAAGTGGCATCATTAGATTGGG 59.354 41.667 0.00 0.00 30.20 4.12
211 212 6.444633 GGATGAAAGTGGCATCATTAGATTG 58.555 40.000 3.75 0.00 42.99 2.67
212 213 5.240183 CGGATGAAAGTGGCATCATTAGATT 59.760 40.000 3.75 0.00 42.99 2.40
213 214 4.758674 CGGATGAAAGTGGCATCATTAGAT 59.241 41.667 3.75 0.00 42.99 1.98
216 217 3.884895 ACGGATGAAAGTGGCATCATTA 58.115 40.909 3.75 0.00 42.99 1.90
217 218 2.726821 ACGGATGAAAGTGGCATCATT 58.273 42.857 3.75 0.00 42.99 2.57
218 219 2.425143 ACGGATGAAAGTGGCATCAT 57.575 45.000 1.83 1.83 42.99 2.45
219 220 3.006940 GTTACGGATGAAAGTGGCATCA 58.993 45.455 0.00 0.00 42.99 3.07
220 221 2.354821 GGTTACGGATGAAAGTGGCATC 59.645 50.000 0.00 0.00 41.03 3.91
221 222 2.026262 AGGTTACGGATGAAAGTGGCAT 60.026 45.455 0.00 0.00 0.00 4.40
222 223 1.349688 AGGTTACGGATGAAAGTGGCA 59.650 47.619 0.00 0.00 0.00 4.92
223 224 2.007608 GAGGTTACGGATGAAAGTGGC 58.992 52.381 0.00 0.00 0.00 5.01
224 225 2.629051 GGAGGTTACGGATGAAAGTGG 58.371 52.381 0.00 0.00 0.00 4.00
225 226 2.027561 TGGGAGGTTACGGATGAAAGTG 60.028 50.000 0.00 0.00 0.00 3.16
226 227 2.262637 TGGGAGGTTACGGATGAAAGT 58.737 47.619 0.00 0.00 0.00 2.66
227 228 3.467803 GATGGGAGGTTACGGATGAAAG 58.532 50.000 0.00 0.00 0.00 2.62
228 229 2.171870 GGATGGGAGGTTACGGATGAAA 59.828 50.000 0.00 0.00 0.00 2.69
230 231 1.062428 AGGATGGGAGGTTACGGATGA 60.062 52.381 0.00 0.00 0.00 2.92
231 232 1.424638 AGGATGGGAGGTTACGGATG 58.575 55.000 0.00 0.00 0.00 3.51
256 257 5.560183 GCAATGCTACACTTACAGTCGTTTT 60.560 40.000 0.00 0.00 0.00 2.43
257 258 4.084013 GCAATGCTACACTTACAGTCGTTT 60.084 41.667 0.00 0.00 0.00 3.60
258 259 3.432252 GCAATGCTACACTTACAGTCGTT 59.568 43.478 0.00 0.00 0.00 3.85
259 260 2.993899 GCAATGCTACACTTACAGTCGT 59.006 45.455 0.00 0.00 0.00 4.34
260 261 3.254060 AGCAATGCTACACTTACAGTCG 58.746 45.455 5.69 0.00 36.99 4.18
261 262 4.499183 AGAGCAATGCTACACTTACAGTC 58.501 43.478 8.12 0.00 39.88 3.51
262 263 4.543590 AGAGCAATGCTACACTTACAGT 57.456 40.909 8.12 0.00 39.88 3.55
263 264 5.869753 AAAGAGCAATGCTACACTTACAG 57.130 39.130 8.12 0.00 39.88 2.74
264 265 6.697395 TCTAAAGAGCAATGCTACACTTACA 58.303 36.000 8.12 0.00 39.88 2.41
265 266 6.814146 ACTCTAAAGAGCAATGCTACACTTAC 59.186 38.462 8.12 0.00 45.79 2.34
266 267 6.813649 CACTCTAAAGAGCAATGCTACACTTA 59.186 38.462 8.12 2.95 45.79 2.24
267 268 5.641209 CACTCTAAAGAGCAATGCTACACTT 59.359 40.000 8.12 4.64 45.79 3.16
269 270 4.201763 GCACTCTAAAGAGCAATGCTACAC 60.202 45.833 8.12 0.00 45.79 2.90
273 274 3.008330 CTGCACTCTAAAGAGCAATGCT 58.992 45.455 7.79 7.79 46.39 3.79
274 275 3.005554 TCTGCACTCTAAAGAGCAATGC 58.994 45.455 6.91 9.87 46.39 3.56
275 276 5.353400 TGAATCTGCACTCTAAAGAGCAATG 59.647 40.000 6.91 0.00 46.39 2.82
277 278 4.898320 TGAATCTGCACTCTAAAGAGCAA 58.102 39.130 6.91 0.00 46.39 3.91
282 283 7.220300 GCAAAATGATGAATCTGCACTCTAAAG 59.780 37.037 0.00 0.00 0.00 1.85
283 284 7.031372 GCAAAATGATGAATCTGCACTCTAAA 58.969 34.615 0.00 0.00 0.00 1.85
284 285 6.376299 AGCAAAATGATGAATCTGCACTCTAA 59.624 34.615 5.41 0.00 32.21 2.10
285 286 5.884232 AGCAAAATGATGAATCTGCACTCTA 59.116 36.000 5.41 0.00 32.21 2.43
286 287 4.705507 AGCAAAATGATGAATCTGCACTCT 59.294 37.500 5.41 0.00 32.21 3.24
288 289 4.142227 GGAGCAAAATGATGAATCTGCACT 60.142 41.667 5.41 0.00 32.21 4.40
289 290 4.110482 GGAGCAAAATGATGAATCTGCAC 58.890 43.478 5.41 0.13 32.21 4.57
293 294 5.824624 ACATACGGAGCAAAATGATGAATCT 59.175 36.000 0.00 0.00 0.00 2.40
294 295 6.064846 ACATACGGAGCAAAATGATGAATC 57.935 37.500 0.00 0.00 0.00 2.52
296 297 6.112734 ACTACATACGGAGCAAAATGATGAA 58.887 36.000 0.00 0.00 0.00 2.57
297 298 5.670485 ACTACATACGGAGCAAAATGATGA 58.330 37.500 0.00 0.00 0.00 2.92
298 299 5.755375 AGACTACATACGGAGCAAAATGATG 59.245 40.000 0.00 0.00 0.00 3.07
301 302 8.988064 ATATAGACTACATACGGAGCAAAATG 57.012 34.615 0.00 0.00 0.00 2.32
302 303 9.424319 CAATATAGACTACATACGGAGCAAAAT 57.576 33.333 0.00 0.00 0.00 1.82
304 305 8.173542 TCAATATAGACTACATACGGAGCAAA 57.826 34.615 0.00 0.00 0.00 3.68
306 307 7.754851 TTCAATATAGACTACATACGGAGCA 57.245 36.000 0.00 0.00 0.00 4.26
307 308 9.291664 GATTTCAATATAGACTACATACGGAGC 57.708 37.037 0.00 0.00 0.00 4.70
379 380 2.344592 TGTTGACCAGGTAACCCATCT 58.655 47.619 0.00 0.00 37.17 2.90
406 407 1.741770 GATGAGCTCACCGGCGTTT 60.742 57.895 20.97 0.00 37.29 3.60
435 436 0.105039 CTACAAGGGCCATCGGAGAC 59.895 60.000 6.18 0.00 42.51 3.36
442 443 1.149174 CCGCATCTACAAGGGCCAT 59.851 57.895 6.18 0.00 0.00 4.40
445 446 1.227674 CTCCCGCATCTACAAGGGC 60.228 63.158 0.00 0.00 43.46 5.19
466 467 1.960250 GAGGAGCAGCATCCATCGC 60.960 63.158 11.98 0.00 42.26 4.58
467 468 1.664017 CGAGGAGCAGCATCCATCG 60.664 63.158 11.98 12.63 42.26 3.84
493 494 4.780275 AACTTACGAACTACCTCCTCAC 57.220 45.455 0.00 0.00 0.00 3.51
496 497 4.704057 CACCTAACTTACGAACTACCTCCT 59.296 45.833 0.00 0.00 0.00 3.69
508 509 4.114058 TGTCGGCATACACCTAACTTAC 57.886 45.455 0.00 0.00 0.00 2.34
511 512 2.300723 TGTTGTCGGCATACACCTAACT 59.699 45.455 0.00 0.00 0.00 2.24
598 599 2.438434 CCACAAAGCCCCCTAGCG 60.438 66.667 0.00 0.00 38.01 4.26
604 605 1.639722 ATTAACCACCACAAAGCCCC 58.360 50.000 0.00 0.00 0.00 5.80
625 626 7.876068 ACTAGATCGGATGTTTACTCACAAAAA 59.124 33.333 0.00 0.00 0.00 1.94
627 628 6.931838 ACTAGATCGGATGTTTACTCACAAA 58.068 36.000 0.00 0.00 0.00 2.83
630 631 6.637658 GCTAACTAGATCGGATGTTTACTCAC 59.362 42.308 0.00 0.00 0.00 3.51
631 632 6.546403 AGCTAACTAGATCGGATGTTTACTCA 59.454 38.462 0.00 0.00 0.00 3.41
633 634 6.963083 AGCTAACTAGATCGGATGTTTACT 57.037 37.500 0.00 0.00 0.00 2.24
635 636 7.342769 TGAAGCTAACTAGATCGGATGTTTA 57.657 36.000 0.00 0.00 0.00 2.01
639 640 6.450545 TGATTGAAGCTAACTAGATCGGATG 58.549 40.000 0.00 0.00 0.00 3.51
644 645 7.925483 ACTGTCATGATTGAAGCTAACTAGATC 59.075 37.037 0.00 0.00 32.48 2.75
652 653 5.576774 CGTTGTACTGTCATGATTGAAGCTA 59.423 40.000 0.00 0.00 32.48 3.32
654 655 4.388773 TCGTTGTACTGTCATGATTGAAGC 59.611 41.667 0.00 0.00 32.48 3.86
699 700 2.565841 GTGGTCTATGAACCTGGATGC 58.434 52.381 0.00 0.00 40.20 3.91
702 703 2.642171 AGGTGGTCTATGAACCTGGA 57.358 50.000 0.00 0.00 42.78 3.86
707 708 5.361285 AGTCATCACTAGGTGGTCTATGAAC 59.639 44.000 0.00 0.00 33.87 3.18
724 725 3.329386 GCTTCAGTGCTTGTAGTCATCA 58.671 45.455 0.00 0.00 0.00 3.07
739 740 1.784062 CGCTTTCGACTGGCTTCAG 59.216 57.895 0.00 0.00 43.84 3.02
766 767 2.721167 CGTGAGGAAGGGGCGATGA 61.721 63.158 0.00 0.00 0.00 2.92
784 785 0.681175 AACAAGTTTGCCATGCTCCC 59.319 50.000 0.00 0.00 0.00 4.30
789 790 5.238432 TGTCTACTACAACAAGTTTGCCATG 59.762 40.000 0.00 0.00 34.29 3.66
790 791 5.373222 TGTCTACTACAACAAGTTTGCCAT 58.627 37.500 0.00 0.00 34.29 4.40
791 792 4.771903 TGTCTACTACAACAAGTTTGCCA 58.228 39.130 0.00 0.00 34.29 4.92
793 794 6.954944 TGAATGTCTACTACAACAAGTTTGC 58.045 36.000 0.00 0.00 42.70 3.68
804 807 7.101652 TGATGACTTCCTGAATGTCTACTAC 57.898 40.000 0.00 0.00 0.00 2.73
814 817 4.225942 ACCTTAGCATGATGACTTCCTGAA 59.774 41.667 0.00 0.00 0.00 3.02
817 820 4.384647 GGAACCTTAGCATGATGACTTCCT 60.385 45.833 0.00 0.00 0.00 3.36
825 828 4.042187 GGTCCTATGGAACCTTAGCATGAT 59.958 45.833 0.00 0.00 32.29 2.45
837 840 1.600107 GTGCGTGGGTCCTATGGAA 59.400 57.895 0.00 0.00 31.38 3.53
838 841 2.363975 GGTGCGTGGGTCCTATGGA 61.364 63.158 0.00 0.00 0.00 3.41
839 842 2.189521 GGTGCGTGGGTCCTATGG 59.810 66.667 0.00 0.00 0.00 2.74
849 852 0.110056 GATTGCTGTTCTGGTGCGTG 60.110 55.000 0.00 0.00 0.00 5.34
853 856 1.503542 GGCGATTGCTGTTCTGGTG 59.496 57.895 4.59 0.00 42.25 4.17
855 858 2.787249 CGGCGATTGCTGTTCTGG 59.213 61.111 0.00 0.00 42.79 3.86
867 870 1.934220 CTACTCTTCACCAGCGGCGA 61.934 60.000 12.98 0.00 0.00 5.54
868 871 1.517257 CTACTCTTCACCAGCGGCG 60.517 63.158 0.51 0.51 0.00 6.46
876 879 5.523188 CCTTCAGATCAATGCTACTCTTCAC 59.477 44.000 0.00 0.00 0.00 3.18
886 889 4.643784 AGGTTGAATCCTTCAGATCAATGC 59.356 41.667 0.00 0.00 41.38 3.56
895 898 4.141505 TGTGTCTTCAGGTTGAATCCTTCA 60.142 41.667 0.00 0.00 35.59 3.02
920 923 6.777827 TTTGTTCGTTGTTCGTTTATGTTC 57.222 33.333 0.00 0.00 40.80 3.18
934 937 3.365969 GGATTTGCTCGGATTTGTTCGTT 60.366 43.478 0.00 0.00 0.00 3.85
942 945 3.382546 CCTTTGATGGATTTGCTCGGATT 59.617 43.478 0.00 0.00 0.00 3.01
946 949 1.473677 TGCCTTTGATGGATTTGCTCG 59.526 47.619 0.00 0.00 0.00 5.03
964 967 1.080995 GTGTGTCTCTGGCGATCTGC 61.081 60.000 0.00 1.55 45.38 4.26
974 978 2.041976 CGTGTGGAGGTGTGTCTCT 58.958 57.895 0.00 0.00 34.39 3.10
1005 1009 4.286291 CAGTAAAGAGAACCCCTAACCAGT 59.714 45.833 0.00 0.00 0.00 4.00
1012 4115 2.224793 GCAACCAGTAAAGAGAACCCCT 60.225 50.000 0.00 0.00 0.00 4.79
1068 4177 6.767902 TCACAATTAGTCTTTGCCTATCCATC 59.232 38.462 0.00 0.00 0.00 3.51
1087 4196 7.445402 GTCATTTACTGGCATAGGTATCACAAT 59.555 37.037 0.00 0.00 0.00 2.71
1088 4197 6.765989 GTCATTTACTGGCATAGGTATCACAA 59.234 38.462 0.00 0.00 0.00 3.33
1153 4268 5.990120 AAATTGAGGAGACCAATTCCAAG 57.010 39.130 0.00 0.00 41.71 3.61
1154 4269 7.181361 TGATAAATTGAGGAGACCAATTCCAA 58.819 34.615 0.00 0.00 41.71 3.53
1384 4643 5.365619 TCCCAAGACTTTCTCAAACTGTAC 58.634 41.667 0.00 0.00 0.00 2.90
1426 4685 8.470805 AGTATAGACACTTTCGAATGAGTGATT 58.529 33.333 28.22 19.46 44.65 2.57
1606 4874 1.741528 CAGCACAGCATCACCATACA 58.258 50.000 0.00 0.00 0.00 2.29
1662 4945 9.737427 CGGATGGAGTAGATCATAATATTACAC 57.263 37.037 0.00 0.00 0.00 2.90
1680 4964 8.438676 AGACAAATATTTAAGAACGGATGGAG 57.561 34.615 0.00 0.00 0.00 3.86
1681 4965 8.801882 AAGACAAATATTTAAGAACGGATGGA 57.198 30.769 0.00 0.00 0.00 3.41
1682 4966 9.503427 GAAAGACAAATATTTAAGAACGGATGG 57.497 33.333 0.00 0.00 0.00 3.51
1710 4994 9.212641 CGGATGTGATATCTATTTGAAATGACT 57.787 33.333 3.98 0.00 0.00 3.41
1711 4995 9.208022 TCGGATGTGATATCTATTTGAAATGAC 57.792 33.333 3.98 0.00 0.00 3.06
1712 4996 9.777297 TTCGGATGTGATATCTATTTGAAATGA 57.223 29.630 3.98 0.00 0.00 2.57
1715 4999 9.559732 ACATTCGGATGTGATATCTATTTGAAA 57.440 29.630 9.01 0.00 44.64 2.69
1722 5006 9.681062 TCTACATACATTCGGATGTGATATCTA 57.319 33.333 19.98 0.00 45.80 1.98
1723 5007 8.462811 GTCTACATACATTCGGATGTGATATCT 58.537 37.037 19.98 0.00 45.80 1.98
1724 5008 8.244113 TGTCTACATACATTCGGATGTGATATC 58.756 37.037 19.98 4.77 45.80 1.63
1725 5009 8.122472 TGTCTACATACATTCGGATGTGATAT 57.878 34.615 19.98 1.93 45.80 1.63
1726 5010 7.519032 TGTCTACATACATTCGGATGTGATA 57.481 36.000 19.98 7.80 45.80 2.15
1727 5011 6.405278 TGTCTACATACATTCGGATGTGAT 57.595 37.500 19.98 7.03 45.80 3.06
1728 5012 5.845391 TGTCTACATACATTCGGATGTGA 57.155 39.130 19.98 4.62 45.80 3.58
1729 5013 8.763049 AATATGTCTACATACATTCGGATGTG 57.237 34.615 19.98 6.17 45.80 3.21
1757 5041 9.323985 GAAGCAAAATGAGTGAATCTATACTCT 57.676 33.333 0.00 0.00 42.86 3.24
1758 5042 8.272176 CGAAGCAAAATGAGTGAATCTATACTC 58.728 37.037 0.00 0.00 42.77 2.59
1759 5043 7.766278 ACGAAGCAAAATGAGTGAATCTATACT 59.234 33.333 0.00 0.00 0.00 2.12
1760 5044 7.910304 ACGAAGCAAAATGAGTGAATCTATAC 58.090 34.615 0.00 0.00 0.00 1.47
1761 5045 9.764363 ATACGAAGCAAAATGAGTGAATCTATA 57.236 29.630 0.00 0.00 0.00 1.31
1762 5046 6.992063 ACGAAGCAAAATGAGTGAATCTAT 57.008 33.333 0.00 0.00 0.00 1.98
1763 5047 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
1764 5048 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
1765 5049 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
1766 5050 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
1767 5051 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
1768 5052 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
1769 5053 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
1770 5054 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
1771 5055 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
1772 5056 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
1773 5057 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
1774 5058 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
1775 5059 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
1776 5060 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
1777 5061 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
1778 5062 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
1779 5063 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
1780 5064 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
1781 5065 7.956420 ATTTCAACAAGTGACTACATACGAA 57.044 32.000 0.00 0.00 35.39 3.85
1782 5066 9.297586 GATATTTCAACAAGTGACTACATACGA 57.702 33.333 0.00 0.00 35.39 3.43
1783 5067 9.302345 AGATATTTCAACAAGTGACTACATACG 57.698 33.333 0.00 0.00 35.39 3.06
1792 5076 9.996554 TGTCTTTCTAGATATTTCAACAAGTGA 57.003 29.630 0.00 0.00 31.86 3.41
1810 5094 8.947115 CCTTCGTTCCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
1811 5095 8.182227 CCCTTCGTTCCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
1812 5096 7.886446 TCCCTTCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
1813 5097 7.399634 TCCCTTCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
1814 5098 6.954232 TCCCTTCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
1815 5099 6.822170 ACTCCCTTCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
1816 5100 6.718294 ACTCCCTTCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
1817 5101 8.202137 TCTACTCCCTTCGTTCCTAAATATTTG 58.798 37.037 11.05 1.40 0.00 2.32
1818 5102 8.315220 TCTACTCCCTTCGTTCCTAAATATTT 57.685 34.615 5.89 5.89 0.00 1.40
1819 5103 7.909485 TCTACTCCCTTCGTTCCTAAATATT 57.091 36.000 0.00 0.00 0.00 1.28
1820 5104 7.909485 TTCTACTCCCTTCGTTCCTAAATAT 57.091 36.000 0.00 0.00 0.00 1.28
1821 5105 7.722949 TTTCTACTCCCTTCGTTCCTAAATA 57.277 36.000 0.00 0.00 0.00 1.40
1822 5106 6.616237 TTTCTACTCCCTTCGTTCCTAAAT 57.384 37.500 0.00 0.00 0.00 1.40
1823 5107 6.423776 TTTTCTACTCCCTTCGTTCCTAAA 57.576 37.500 0.00 0.00 0.00 1.85
1824 5108 6.616237 ATTTTCTACTCCCTTCGTTCCTAA 57.384 37.500 0.00 0.00 0.00 2.69
1825 5109 6.894103 AGTATTTTCTACTCCCTTCGTTCCTA 59.106 38.462 0.00 0.00 0.00 2.94
1826 5110 5.720520 AGTATTTTCTACTCCCTTCGTTCCT 59.279 40.000 0.00 0.00 0.00 3.36
1827 5111 5.975282 AGTATTTTCTACTCCCTTCGTTCC 58.025 41.667 0.00 0.00 0.00 3.62
1838 5122 5.720520 AGAAACGGAGGGAGTATTTTCTACT 59.279 40.000 0.00 0.00 32.78 2.57
1841 5125 6.616237 TTAGAAACGGAGGGAGTATTTTCT 57.384 37.500 0.00 0.00 37.18 2.52
1847 5131 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
1881 5165 6.935771 CGTATGTAGTCCACCTAGTAGAATCT 59.064 42.308 0.00 0.00 0.00 2.40
1882 5166 6.149142 CCGTATGTAGTCCACCTAGTAGAATC 59.851 46.154 0.00 0.00 0.00 2.52
1884 5168 5.130975 TCCGTATGTAGTCCACCTAGTAGAA 59.869 44.000 0.00 0.00 0.00 2.10
1885 5169 4.655649 TCCGTATGTAGTCCACCTAGTAGA 59.344 45.833 0.00 0.00 0.00 2.59
1886 5170 4.965814 TCCGTATGTAGTCCACCTAGTAG 58.034 47.826 0.00 0.00 0.00 2.57
1889 5173 2.553172 GCTCCGTATGTAGTCCACCTAG 59.447 54.545 0.00 0.00 0.00 3.02
1891 5175 1.341679 TGCTCCGTATGTAGTCCACCT 60.342 52.381 0.00 0.00 0.00 4.00
1892 5176 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
1896 5180 7.145985 TCATCTATTTTGCTCCGTATGTAGTC 58.854 38.462 0.00 0.00 0.00 2.59
1898 5182 7.946655 TTCATCTATTTTGCTCCGTATGTAG 57.053 36.000 0.00 0.00 0.00 2.74
1899 5183 8.367911 AGATTCATCTATTTTGCTCCGTATGTA 58.632 33.333 0.00 0.00 34.85 2.29
1901 5185 7.664082 AGATTCATCTATTTTGCTCCGTATG 57.336 36.000 0.00 0.00 34.85 2.39
1902 5186 8.367911 TGTAGATTCATCTATTTTGCTCCGTAT 58.632 33.333 0.00 0.00 41.09 3.06
1903 5187 7.652105 GTGTAGATTCATCTATTTTGCTCCGTA 59.348 37.037 0.00 0.00 41.09 4.02
1906 5190 8.443953 AAGTGTAGATTCATCTATTTTGCTCC 57.556 34.615 0.00 0.00 41.09 4.70
1916 5200 9.624373 AGATGCATTTTAAGTGTAGATTCATCT 57.376 29.630 0.00 0.00 40.86 2.90
1928 5212 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
1932 5216 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
1933 5217 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
1935 5219 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
1936 5220 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
1937 5221 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
1938 5222 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
1939 5223 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
1940 5224 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
1941 5225 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
1942 5226 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
1944 5228 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
1945 5229 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
1946 5230 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
1948 5232 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
1949 5233 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
1951 5235 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
1952 5236 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
1953 5237 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
1954 5238 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
1955 5239 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
1957 5241 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
1958 5242 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
1959 5243 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
1960 5244 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
1961 5245 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
1962 5246 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
1978 5262 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1981 5265 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1982 5266 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1988 5272 6.563163 AGATACTCCCTCCGTTCCTAAATAT 58.437 40.000 0.00 0.00 0.00 1.28
1994 5278 2.850695 AAGATACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
1997 5281 4.161754 CCACTAAAAGATACTCCCTCCGTT 59.838 45.833 0.00 0.00 0.00 4.44
2230 5978 4.771590 TTCAATTCCTGCAGATGTCAAC 57.228 40.909 17.39 0.00 0.00 3.18
2272 6115 2.173569 AGAAAAACTGGACTGCAGGTCT 59.826 45.455 19.93 0.00 43.97 3.85
2273 6116 2.550180 GAGAAAAACTGGACTGCAGGTC 59.450 50.000 19.93 12.72 43.79 3.85
2274 6117 2.173569 AGAGAAAAACTGGACTGCAGGT 59.826 45.455 19.93 2.70 0.00 4.00
2275 6118 2.810852 GAGAGAAAAACTGGACTGCAGG 59.189 50.000 19.93 1.96 0.00 4.85
2524 8197 6.204882 GTGGTAGAAAATGACTTGCTACTTGT 59.795 38.462 0.00 0.00 33.68 3.16
2548 8221 9.855021 CGAAATGAATTTATTAGTTTTCCCTGT 57.145 29.630 0.00 0.00 0.00 4.00
2549 8222 9.855021 ACGAAATGAATTTATTAGTTTTCCCTG 57.145 29.630 0.00 0.00 0.00 4.45
2959 8822 6.822442 TCACAATAGCATATCTAACCGGAAA 58.178 36.000 9.46 0.00 0.00 3.13
3053 9921 8.421002 AGAAATAGCAGTAAAAAGGAAAGCAAA 58.579 29.630 0.00 0.00 0.00 3.68
3102 10032 6.370166 AGCTAAGCAAAGTGTCATAGAGAAAC 59.630 38.462 0.00 0.00 34.45 2.78
3169 10644 7.831691 TGGTGTCCAGAAAAGATCAAATAAA 57.168 32.000 0.00 0.00 0.00 1.40
3170 10645 7.577426 GCATGGTGTCCAGAAAAGATCAAATAA 60.577 37.037 0.00 0.00 36.75 1.40
3232 10710 1.212935 AGGTGGGTGAAGGCATGATAC 59.787 52.381 0.00 0.00 0.00 2.24
3233 10711 1.490490 GAGGTGGGTGAAGGCATGATA 59.510 52.381 0.00 0.00 0.00 2.15
3310 10788 2.675348 CTCGTCTGATTTTTCTGGCTCC 59.325 50.000 0.00 0.00 0.00 4.70
3337 10815 4.403453 CAACAAGGTTTAGCAATACTCGC 58.597 43.478 0.00 0.00 0.00 5.03
3435 10915 4.096382 TGAACAAGGAAAGTGAAAGAGCAC 59.904 41.667 0.00 0.00 39.05 4.40
3436 10916 4.269183 TGAACAAGGAAAGTGAAAGAGCA 58.731 39.130 0.00 0.00 0.00 4.26
3437 10917 4.900635 TGAACAAGGAAAGTGAAAGAGC 57.099 40.909 0.00 0.00 0.00 4.09
3454 10934 0.674895 AGCAAGGCAGGTCGATGAAC 60.675 55.000 0.00 0.00 0.00 3.18
3455 10935 0.036732 AAGCAAGGCAGGTCGATGAA 59.963 50.000 0.00 0.00 0.00 2.57
3457 10937 0.449388 GAAAGCAAGGCAGGTCGATG 59.551 55.000 0.00 0.00 0.00 3.84
3458 10938 0.036732 TGAAAGCAAGGCAGGTCGAT 59.963 50.000 0.00 0.00 0.00 3.59
3460 10940 0.886490 ACTGAAAGCAAGGCAGGTCG 60.886 55.000 0.00 0.00 37.60 4.79
3461 10941 1.322442 AACTGAAAGCAAGGCAGGTC 58.678 50.000 0.00 0.00 37.60 3.85
3463 10943 1.541588 GGTAACTGAAAGCAAGGCAGG 59.458 52.381 0.00 0.00 37.60 4.85
3465 10945 1.144913 AGGGTAACTGAAAGCAAGGCA 59.855 47.619 0.00 0.00 37.60 4.75
3484 11144 7.514721 AGGAACTAGGAGAGTACTAATGAGAG 58.485 42.308 0.00 0.00 37.44 3.20
3547 11220 1.218196 TGCACAAAAAGGGGAAGGGTA 59.782 47.619 0.00 0.00 0.00 3.69
3563 11237 1.203052 AGCAGGCACAAACATATGCAC 59.797 47.619 1.58 0.00 43.93 4.57
3730 13108 7.451255 TGAGAGGGAACAACATACAAATCAAAT 59.549 33.333 0.00 0.00 0.00 2.32
3798 13184 3.072768 ACAATGTGAAATGGGCAAATGGT 59.927 39.130 0.00 0.00 0.00 3.55
3854 13253 3.308323 GCATGCTCTTCAAGTACTGTAGC 59.692 47.826 11.37 2.32 0.00 3.58
3876 13275 7.390718 AGGGTGTAGTATTTACTGAAAGCAAAG 59.609 37.037 0.45 0.00 31.72 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.