Multiple sequence alignment - TraesCS6A01G061100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G061100 chr6A 100.000 6688 0 0 1 6688 32815233 32808546 0.000000e+00 12351.0
1 TraesCS6A01G061100 chr6A 90.358 2209 186 17 3059 5256 32885541 32883349 0.000000e+00 2874.0
2 TraesCS6A01G061100 chr6A 86.744 2316 242 31 3059 5344 46698825 46696545 0.000000e+00 2516.0
3 TraesCS6A01G061100 chr6A 84.299 1312 166 31 4007 5300 31751847 31750558 0.000000e+00 1245.0
4 TraesCS6A01G061100 chr6A 87.818 944 60 13 1228 2154 32887504 32886599 0.000000e+00 1055.0
5 TraesCS6A01G061100 chr6A 90.183 601 43 9 2465 3062 32885821 32885234 0.000000e+00 769.0
6 TraesCS6A01G061100 chr6A 88.057 628 53 8 5862 6479 32882534 32881919 0.000000e+00 725.0
7 TraesCS6A01G061100 chr6A 93.291 313 16 3 2753 3062 32812175 32811865 2.200000e-124 457.0
8 TraesCS6A01G061100 chr6A 93.291 313 16 3 3059 3369 32812481 32812172 2.200000e-124 457.0
9 TraesCS6A01G061100 chr6A 82.927 410 37 20 898 1297 32739293 32739679 8.310000e-89 339.0
10 TraesCS6A01G061100 chr6A 90.204 245 22 1 2220 2464 32886112 32885870 1.080000e-82 318.0
11 TraesCS6A01G061100 chr6A 91.905 210 17 0 6479 6688 32881717 32881508 1.820000e-75 294.0
12 TraesCS6A01G061100 chr6A 83.041 342 37 12 5143 5482 46696691 46696369 2.360000e-74 291.0
13 TraesCS6A01G061100 chr6A 76.568 542 72 27 772 1288 31755420 31754909 5.180000e-61 246.0
14 TraesCS6A01G061100 chr6A 78.199 422 42 24 898 1288 32887957 32887555 2.430000e-54 224.0
15 TraesCS6A01G061100 chr6A 79.603 353 34 10 5702 6017 46695259 46694908 1.130000e-52 219.0
16 TraesCS6A01G061100 chr6A 84.120 233 22 9 919 1149 31756721 31756502 1.890000e-50 211.0
17 TraesCS6A01G061100 chr6A 91.034 145 11 2 5561 5705 32882817 32882675 1.900000e-45 195.0
18 TraesCS6A01G061100 chr6A 100.000 41 0 0 2151 2191 32813045 32813005 7.190000e-10 76.8
19 TraesCS6A01G061100 chr6A 100.000 41 0 0 2189 2229 32813083 32813043 7.190000e-10 76.8
20 TraesCS6A01G061100 chr6D 95.803 4027 127 18 2465 6479 29924988 29928984 0.000000e+00 6462.0
21 TraesCS6A01G061100 chr6D 89.977 2215 194 16 3056 5256 29851403 29853603 0.000000e+00 2835.0
22 TraesCS6A01G061100 chr6D 91.291 1642 77 16 358 1967 29921816 29923423 0.000000e+00 2180.0
23 TraesCS6A01G061100 chr6D 83.515 2293 287 59 3060 5300 31269365 31267112 0.000000e+00 2056.0
24 TraesCS6A01G061100 chr6D 85.266 957 76 25 1228 2154 29849417 29850338 0.000000e+00 926.0
25 TraesCS6A01G061100 chr6D 90.365 602 50 6 2465 3062 29851118 29851715 0.000000e+00 784.0
26 TraesCS6A01G061100 chr6D 82.346 895 107 28 3059 3925 31472278 31473149 0.000000e+00 730.0
27 TraesCS6A01G061100 chr6D 86.970 637 57 13 5859 6479 29854412 29855038 0.000000e+00 693.0
28 TraesCS6A01G061100 chr6D 94.937 316 15 1 3056 3370 29925270 29925585 1.680000e-135 494.0
29 TraesCS6A01G061100 chr6D 94.182 275 13 2 2190 2464 29924668 29924939 3.730000e-112 416.0
30 TraesCS6A01G061100 chr6D 84.874 357 43 4 2705 3055 30097398 30097047 3.840000e-92 350.0
31 TraesCS6A01G061100 chr6D 92.245 245 19 0 2220 2464 29850825 29851069 1.380000e-91 348.0
32 TraesCS6A01G061100 chr6D 94.634 205 11 0 6480 6684 29929191 29929395 1.080000e-82 318.0
33 TraesCS6A01G061100 chr6D 82.025 395 33 18 898 1288 31271636 31271276 1.090000e-77 302.0
34 TraesCS6A01G061100 chr6D 80.440 409 37 21 898 1288 29848983 29849366 8.550000e-69 272.0
35 TraesCS6A01G061100 chr6D 77.338 556 64 28 771 1288 31469570 31470101 8.550000e-69 272.0
36 TraesCS6A01G061100 chr6D 79.902 408 40 19 898 1288 30099812 30099430 1.850000e-65 261.0
37 TraesCS6A01G061100 chr6D 97.987 149 2 1 2007 2154 29923421 29923569 2.390000e-64 257.0
38 TraesCS6A01G061100 chr6D 92.857 168 9 3 368 534 29921621 29921786 2.410000e-59 241.0
39 TraesCS6A01G061100 chr6D 91.724 145 11 1 5561 5705 29854130 29854273 4.090000e-47 200.0
40 TraesCS6A01G061100 chr6D 80.296 203 18 12 64 261 29921311 29921496 4.210000e-27 134.0
41 TraesCS6A01G061100 chr6D 100.000 30 0 0 4 33 90436118 90436147 1.000000e-03 56.5
42 TraesCS6A01G061100 chr6B 94.626 4038 144 31 2465 6479 57734283 57730296 0.000000e+00 6187.0
43 TraesCS6A01G061100 chr6B 87.357 2278 233 32 3059 5300 79877918 79880176 0.000000e+00 2560.0
44 TraesCS6A01G061100 chr6B 91.506 1813 103 21 364 2154 57737518 57735735 0.000000e+00 2447.0
45 TraesCS6A01G061100 chr6B 84.402 1295 162 29 3917 5196 56396144 56394875 0.000000e+00 1236.0
46 TraesCS6A01G061100 chr6B 83.705 896 111 23 3060 3927 56397052 56396164 0.000000e+00 813.0
47 TraesCS6A01G061100 chr6B 94.872 312 15 1 3059 3369 57733998 57733687 2.800000e-133 486.0
48 TraesCS6A01G061100 chr6B 84.358 358 44 7 2705 3055 57417663 57418015 2.310000e-89 340.0
49 TraesCS6A01G061100 chr6B 80.244 491 49 13 5724 6168 79880967 79881455 6.470000e-85 326.0
50 TraesCS6A01G061100 chr6B 78.428 547 63 24 771 1287 56381700 56381179 8.430000e-79 305.0
51 TraesCS6A01G061100 chr6B 94.030 201 12 0 6488 6688 57729931 57729731 8.430000e-79 305.0
52 TraesCS6A01G061100 chr6B 79.192 495 45 28 813 1288 56399562 56399107 2.360000e-74 291.0
53 TraesCS6A01G061100 chr6B 89.083 229 24 1 2239 2466 79877295 79877523 3.950000e-72 283.0
54 TraesCS6A01G061100 chr6B 85.714 245 31 1 2220 2464 56379512 56379272 8.610000e-64 255.0
55 TraesCS6A01G061100 chr6B 92.857 168 9 3 368 534 57737719 57737554 2.410000e-59 241.0
56 TraesCS6A01G061100 chr6B 77.938 417 60 17 1231 1643 197773063 197772675 1.450000e-56 231.0
57 TraesCS6A01G061100 chr6B 84.163 221 22 8 57 273 57738043 57737832 1.140000e-47 202.0
58 TraesCS6A01G061100 chr6B 89.510 143 15 0 5563 5705 79880720 79880862 1.480000e-41 182.0
59 TraesCS6A01G061100 chr2D 88.953 2254 193 26 3080 5300 48565506 48567736 0.000000e+00 2732.0
60 TraesCS6A01G061100 chr2D 88.983 354 27 6 1810 2154 48564158 48564508 1.720000e-115 427.0
61 TraesCS6A01G061100 chr2D 92.653 245 16 1 2220 2464 48564989 48565231 1.070000e-92 351.0
62 TraesCS6A01G061100 chr2D 85.531 311 29 8 5189 5496 48567581 48567878 1.810000e-80 311.0
63 TraesCS6A01G061100 chr2D 81.159 414 41 12 898 1288 48562254 48562653 1.410000e-76 298.0
64 TraesCS6A01G061100 chr2D 94.483 145 8 0 5561 5705 48568273 48568417 2.430000e-54 224.0
65 TraesCS6A01G061100 chr2D 90.196 51 5 0 284 334 61766956 61766906 4.330000e-07 67.6
66 TraesCS6A01G061100 chr2D 100.000 30 0 0 4 33 641869530 641869559 1.000000e-03 56.5
67 TraesCS6A01G061100 chrUn 87.731 2274 229 28 3059 5300 27473598 27475853 0.000000e+00 2608.0
68 TraesCS6A01G061100 chrUn 81.864 601 81 21 2465 3055 137913607 137913025 1.300000e-131 481.0
69 TraesCS6A01G061100 chrUn 82.745 510 41 18 5702 6168 27477157 27477662 1.740000e-110 411.0
70 TraesCS6A01G061100 chrUn 87.805 246 28 2 2220 2464 27472951 27473195 3.050000e-73 287.0
71 TraesCS6A01G061100 chrUn 87.603 242 29 1 2220 2460 137913905 137913664 5.110000e-71 279.0
72 TraesCS6A01G061100 chrUn 81.955 266 35 7 5233 5496 137911208 137910954 5.250000e-51 213.0
73 TraesCS6A01G061100 chrUn 100.000 29 0 0 5 33 48670282 48670310 3.000000e-03 54.7
74 TraesCS6A01G061100 chr5B 83.527 947 105 21 1232 2154 660815579 660814660 0.000000e+00 837.0
75 TraesCS6A01G061100 chr5B 87.342 632 70 3 3059 3685 660813607 660812981 0.000000e+00 715.0
76 TraesCS6A01G061100 chr5B 85.871 637 60 15 2465 3082 660813905 660813280 0.000000e+00 651.0
77 TraesCS6A01G061100 chr5B 90.612 245 20 2 2220 2464 660814195 660813954 8.370000e-84 322.0
78 TraesCS6A01G061100 chr5B 100.000 32 0 0 4 35 274342473 274342504 7.240000e-05 60.2
79 TraesCS6A01G061100 chr5A 81.609 957 108 30 1228 2154 544450158 544449240 0.000000e+00 730.0
80 TraesCS6A01G061100 chr5A 83.871 155 18 6 1810 1960 655642600 655642751 2.510000e-29 141.0
81 TraesCS6A01G061100 chr5A 85.385 130 16 3 1810 1937 655641437 655641565 1.510000e-26 132.0
82 TraesCS6A01G061100 chr3A 80.488 943 101 28 1229 2154 290428541 290427665 0.000000e+00 645.0
83 TraesCS6A01G061100 chr3A 83.092 207 29 4 2476 2676 699755562 699755356 4.120000e-42 183.0
84 TraesCS6A01G061100 chr3A 100.000 32 0 0 4 35 677840643 677840674 7.240000e-05 60.2
85 TraesCS6A01G061100 chr3D 86.762 559 57 12 3124 3675 550357784 550358332 2.060000e-169 606.0
86 TraesCS6A01G061100 chr3D 86.111 108 12 3 1705 1812 565563067 565562963 5.480000e-21 113.0
87 TraesCS6A01G061100 chr3D 97.619 42 1 0 2604 2645 550357754 550357713 9.300000e-09 73.1
88 TraesCS6A01G061100 chr3B 87.450 502 52 8 3135 3630 558549426 558549922 9.730000e-158 568.0
89 TraesCS6A01G061100 chr3B 86.992 123 10 5 1498 1615 753581564 753581443 4.210000e-27 134.0
90 TraesCS6A01G061100 chr3B 86.726 113 7 5 1705 1812 753581387 753581278 1.180000e-22 119.0
91 TraesCS6A01G061100 chr3B 95.122 41 2 0 2604 2644 558549387 558549347 1.560000e-06 65.8
92 TraesCS6A01G061100 chr3B 96.875 32 1 0 4 35 206156780 206156749 3.000000e-03 54.7
93 TraesCS6A01G061100 chr7B 100.000 30 0 0 4 33 449480104 449480133 1.000000e-03 56.5
94 TraesCS6A01G061100 chr5D 94.444 36 2 0 4 39 496080546 496080511 1.000000e-03 56.5
95 TraesCS6A01G061100 chr2B 100.000 30 0 0 4 33 491057209 491057180 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G061100 chr6A 32808546 32815233 6687 True 2683.720000 12351 97.316400 1 6688 5 chr6A.!!$R2 6687
1 TraesCS6A01G061100 chr6A 46694908 46698825 3917 True 1008.666667 2516 83.129333 3059 6017 3 chr6A.!!$R4 2958
2 TraesCS6A01G061100 chr6A 32881508 32887957 6449 True 806.750000 2874 88.469750 898 6688 8 chr6A.!!$R3 5790
3 TraesCS6A01G061100 chr6A 31750558 31756721 6163 True 567.333333 1245 81.662333 772 5300 3 chr6A.!!$R1 4528
4 TraesCS6A01G061100 chr6D 29921311 29929395 8084 False 1312.750000 6462 92.748375 64 6684 8 chr6D.!!$F3 6620
5 TraesCS6A01G061100 chr6D 31267112 31271636 4524 True 1179.000000 2056 82.770000 898 5300 2 chr6D.!!$R2 4402
6 TraesCS6A01G061100 chr6D 29848983 29855038 6055 False 865.428571 2835 88.141000 898 6479 7 chr6D.!!$F2 5581
7 TraesCS6A01G061100 chr6D 31469570 31473149 3579 False 501.000000 730 79.842000 771 3925 2 chr6D.!!$F4 3154
8 TraesCS6A01G061100 chr6D 30097047 30099812 2765 True 305.500000 350 82.388000 898 3055 2 chr6D.!!$R1 2157
9 TraesCS6A01G061100 chr6B 57729731 57738043 8312 True 1644.666667 6187 92.009000 57 6688 6 chr6B.!!$R4 6631
10 TraesCS6A01G061100 chr6B 79877295 79881455 4160 False 837.750000 2560 86.548500 2239 6168 4 chr6B.!!$F2 3929
11 TraesCS6A01G061100 chr6B 56394875 56399562 4687 True 780.000000 1236 82.433000 813 5196 3 chr6B.!!$R3 4383
12 TraesCS6A01G061100 chr6B 56379272 56381700 2428 True 280.000000 305 82.071000 771 2464 2 chr6B.!!$R2 1693
13 TraesCS6A01G061100 chr2D 48562254 48568417 6163 False 723.833333 2732 88.627000 898 5705 6 chr2D.!!$F2 4807
14 TraesCS6A01G061100 chrUn 27472951 27477662 4711 False 1102.000000 2608 86.093667 2220 6168 3 chrUn.!!$F2 3948
15 TraesCS6A01G061100 chrUn 137910954 137913905 2951 True 324.333333 481 83.807333 2220 5496 3 chrUn.!!$R1 3276
16 TraesCS6A01G061100 chr5B 660812981 660815579 2598 True 631.250000 837 86.838000 1232 3685 4 chr5B.!!$R1 2453
17 TraesCS6A01G061100 chr5A 544449240 544450158 918 True 730.000000 730 81.609000 1228 2154 1 chr5A.!!$R1 926
18 TraesCS6A01G061100 chr3A 290427665 290428541 876 True 645.000000 645 80.488000 1229 2154 1 chr3A.!!$R1 925
19 TraesCS6A01G061100 chr3D 550357784 550358332 548 False 606.000000 606 86.762000 3124 3675 1 chr3D.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 268 0.387239 ACCGCGCTCAATCTTTTTGC 60.387 50.000 5.56 0.00 0.00 3.68 F
318 371 0.388134 TAACAGACGTCTGAAGCGCC 60.388 55.000 43.55 4.66 46.59 6.53 F
1167 1802 0.745845 CTCCAACGCCTCCTCCAATG 60.746 60.000 0.00 0.00 0.00 2.82 F
1168 1803 1.750399 CCAACGCCTCCTCCAATGG 60.750 63.158 0.00 0.00 0.00 3.16 F
2833 7658 0.033504 TTCAGAACGTGAGGAGCACC 59.966 55.000 0.00 0.00 44.85 5.01 F
2842 7667 0.108585 TGAGGAGCACCAGGTTTGTC 59.891 55.000 2.07 0.00 38.94 3.18 F
2846 7671 0.108585 GAGCACCAGGTTTGTCTCCA 59.891 55.000 0.00 0.00 0.00 3.86 F
5390 11183 0.593128 GCCGTTGAATGAGTGTTGCT 59.407 50.000 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 4927 0.550914 TGCAGTTGACTTCCCTTGGT 59.449 50.000 0.00 0.0 0.00 3.67 R
2155 4928 1.915141 ATGCAGTTGACTTCCCTTGG 58.085 50.000 0.00 0.0 0.00 3.61 R
2814 7639 0.033504 GGTGCTCCTCACGTTCTGAA 59.966 55.000 0.00 0.0 46.56 3.02 R
3123 8254 0.037303 CCTGGTGCTCCACATGTCTT 59.963 55.000 2.64 0.0 39.03 3.01 R
4623 10258 1.865865 TTTCTCACTGTCTTGCGTCC 58.134 50.000 0.00 0.0 0.00 4.79 R
4775 10413 3.308035 TGGTCGACCTCTGGTATATGT 57.692 47.619 33.39 0.0 35.25 2.29 R
5437 11233 8.803235 CACAAGTAAGTATATCCTATGCCTACA 58.197 37.037 0.00 0.0 0.00 2.74 R
6351 13289 0.112412 ACTGCCGATTCAGGGGTTTT 59.888 50.000 4.75 0.0 38.36 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 126 3.714280 TGGGGAAAGGGAAAAGGAAAAAG 59.286 43.478 0.00 0.00 0.00 2.27
123 127 3.072476 GGGGAAAGGGAAAAGGAAAAAGG 59.928 47.826 0.00 0.00 0.00 3.11
125 129 3.072476 GGAAAGGGAAAAGGAAAAAGGGG 59.928 47.826 0.00 0.00 0.00 4.79
126 130 3.717507 AAGGGAAAAGGAAAAAGGGGA 57.282 42.857 0.00 0.00 0.00 4.81
132 136 4.410883 GGAAAAGGAAAAAGGGGAAAAGGA 59.589 41.667 0.00 0.00 0.00 3.36
133 137 5.104277 GGAAAAGGAAAAAGGGGAAAAGGAA 60.104 40.000 0.00 0.00 0.00 3.36
134 138 6.395780 AAAAGGAAAAAGGGGAAAAGGAAA 57.604 33.333 0.00 0.00 0.00 3.13
212 216 2.808933 GCTGGTTGGTTAGTGCAGTGTA 60.809 50.000 3.69 0.00 0.00 2.90
232 237 1.379044 GTGCATCCAGGAGGTTGGG 60.379 63.158 2.38 0.00 38.81 4.12
247 252 2.094752 GGTTGGGATTCAATTCACACCG 60.095 50.000 0.00 0.00 37.73 4.94
261 266 0.951558 ACACCGCGCTCAATCTTTTT 59.048 45.000 5.56 0.00 0.00 1.94
263 268 0.387239 ACCGCGCTCAATCTTTTTGC 60.387 50.000 5.56 0.00 0.00 3.68
266 271 1.319374 CGCGCTCAATCTTTTTGCATG 59.681 47.619 5.56 0.00 0.00 4.06
269 274 3.184986 GCGCTCAATCTTTTTGCATGTTT 59.815 39.130 0.00 0.00 0.00 2.83
306 359 7.114811 CCATTTACAAAATGCACAGTAACAGAC 59.885 37.037 6.82 0.00 0.00 3.51
307 360 4.209452 ACAAAATGCACAGTAACAGACG 57.791 40.909 0.00 0.00 0.00 4.18
309 362 4.211389 CAAAATGCACAGTAACAGACGTC 58.789 43.478 7.70 7.70 0.00 4.34
310 363 3.386768 AATGCACAGTAACAGACGTCT 57.613 42.857 13.58 13.58 0.00 4.18
314 367 2.726760 GCACAGTAACAGACGTCTGAAG 59.273 50.000 43.55 29.18 46.59 3.02
315 368 2.726760 CACAGTAACAGACGTCTGAAGC 59.273 50.000 43.55 30.93 46.59 3.86
316 369 1.979469 CAGTAACAGACGTCTGAAGCG 59.021 52.381 43.55 25.77 46.59 4.68
317 370 0.708918 GTAACAGACGTCTGAAGCGC 59.291 55.000 43.55 25.95 46.59 5.92
318 371 0.388134 TAACAGACGTCTGAAGCGCC 60.388 55.000 43.55 4.66 46.59 6.53
353 406 2.842457 GGGAAACCGAACAAGTAGTGT 58.158 47.619 0.00 0.00 41.98 3.55
354 407 2.546789 GGGAAACCGAACAAGTAGTGTG 59.453 50.000 0.00 0.00 39.80 3.82
355 408 3.460103 GGAAACCGAACAAGTAGTGTGA 58.540 45.455 0.00 0.00 40.60 3.58
356 409 3.246936 GGAAACCGAACAAGTAGTGTGAC 59.753 47.826 0.00 0.00 40.60 3.67
357 410 2.129823 ACCGAACAAGTAGTGTGACG 57.870 50.000 0.00 0.00 40.60 4.35
358 411 1.406539 ACCGAACAAGTAGTGTGACGT 59.593 47.619 0.00 0.00 40.60 4.34
359 412 2.049228 CCGAACAAGTAGTGTGACGTC 58.951 52.381 9.11 9.11 40.60 4.34
360 413 2.542205 CCGAACAAGTAGTGTGACGTCA 60.542 50.000 15.76 15.76 40.60 4.35
364 417 3.902150 ACAAGTAGTGTGACGTCAGATG 58.098 45.455 20.73 14.69 39.72 2.90
365 418 3.568430 ACAAGTAGTGTGACGTCAGATGA 59.432 43.478 20.73 6.96 39.72 2.92
366 419 4.162072 CAAGTAGTGTGACGTCAGATGAG 58.838 47.826 20.73 2.55 0.00 2.90
374 427 4.944317 TGTGACGTCAGATGAGTTCTAGAT 59.056 41.667 20.73 0.00 31.77 1.98
458 716 7.280428 CACTTGCCATTAAATTCATTGCCATAA 59.720 33.333 0.00 0.00 0.00 1.90
476 734 9.814899 TTGCCATAAAATATTCAGTTACAATGG 57.185 29.630 0.00 0.00 0.00 3.16
596 854 9.474920 AAGATTTTAATGAAATTTCTTGCGTCA 57.525 25.926 18.64 0.00 38.06 4.35
638 896 2.242708 ACAACCACCCTTAAAGGACACA 59.757 45.455 0.00 0.00 37.67 3.72
686 944 2.851263 TTGTGATCAACGTAGGCCTT 57.149 45.000 12.58 0.00 0.00 4.35
704 962 2.108362 GTTCGATGGCTACCCCCG 59.892 66.667 0.00 0.00 0.00 5.73
706 964 1.991167 TTCGATGGCTACCCCCGTT 60.991 57.895 0.00 0.00 0.00 4.44
707 965 1.555477 TTCGATGGCTACCCCCGTTT 61.555 55.000 0.00 0.00 0.00 3.60
708 966 1.523032 CGATGGCTACCCCCGTTTC 60.523 63.158 0.00 0.00 0.00 2.78
767 1025 3.745799 TGACACGTGTTACCCATTCAAT 58.254 40.909 24.26 0.00 0.00 2.57
840 1374 1.533625 TGTGGGCTGTATCTGCAAAC 58.466 50.000 0.00 0.00 0.00 2.93
858 1395 2.661566 CGAGAAGTGTGTGCCTGCG 61.662 63.158 0.00 0.00 0.00 5.18
859 1396 1.300931 GAGAAGTGTGTGCCTGCGA 60.301 57.895 0.00 0.00 0.00 5.10
884 1450 6.775629 ACCTGTACTAATGTTTGGTTCAACAT 59.224 34.615 0.00 0.00 0.00 2.71
885 1451 7.083858 CCTGTACTAATGTTTGGTTCAACATG 58.916 38.462 0.00 0.00 0.00 3.21
886 1452 6.976088 TGTACTAATGTTTGGTTCAACATGG 58.024 36.000 0.00 0.54 0.00 3.66
887 1453 6.773200 TGTACTAATGTTTGGTTCAACATGGA 59.227 34.615 0.00 0.00 0.00 3.41
888 1454 6.084326 ACTAATGTTTGGTTCAACATGGAC 57.916 37.500 0.00 0.00 0.00 4.02
889 1455 5.833131 ACTAATGTTTGGTTCAACATGGACT 59.167 36.000 0.00 0.00 0.00 3.85
890 1456 5.612725 AATGTTTGGTTCAACATGGACTT 57.387 34.783 0.00 0.00 0.00 3.01
891 1457 5.612725 ATGTTTGGTTCAACATGGACTTT 57.387 34.783 0.00 0.00 0.00 2.66
892 1458 5.413309 TGTTTGGTTCAACATGGACTTTT 57.587 34.783 0.00 0.00 0.00 2.27
893 1459 5.799213 TGTTTGGTTCAACATGGACTTTTT 58.201 33.333 0.00 0.00 0.00 1.94
981 1564 2.669240 CGTCAACCCTTCTCCCCC 59.331 66.667 0.00 0.00 0.00 5.40
1130 1732 1.378778 AGAACCGGTCGAGGAGGAG 60.379 63.158 8.04 0.00 34.73 3.69
1164 1799 3.003173 CCTCCAACGCCTCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
1165 1800 2.592993 CCTCCAACGCCTCCTCCAA 61.593 63.158 0.00 0.00 0.00 3.53
1166 1801 1.604378 CTCCAACGCCTCCTCCAAT 59.396 57.895 0.00 0.00 0.00 3.16
1167 1802 0.745845 CTCCAACGCCTCCTCCAATG 60.746 60.000 0.00 0.00 0.00 2.82
1168 1803 1.750399 CCAACGCCTCCTCCAATGG 60.750 63.158 0.00 0.00 0.00 3.16
1319 2176 2.359975 CCCTTTCCGCCACCTGTC 60.360 66.667 0.00 0.00 0.00 3.51
1672 3377 2.645838 TCTGGTCTTCTTGCTTGCTT 57.354 45.000 0.00 0.00 0.00 3.91
1739 3455 3.430929 GGCGTGGAACTGTGATCTCTTAT 60.431 47.826 0.00 0.00 31.75 1.73
1947 4635 7.897575 AACTGATTCTTCTATTCAGTGTGAC 57.102 36.000 5.64 0.00 44.29 3.67
1948 4636 7.238486 ACTGATTCTTCTATTCAGTGTGACT 57.762 36.000 4.15 0.00 43.71 3.41
1962 4666 6.230472 TCAGTGTGACTACATATTTTGCTGT 58.770 36.000 0.00 0.00 39.39 4.40
2117 4890 6.908825 TGAATGTTTGCACTGGATTACTTAC 58.091 36.000 0.00 0.00 0.00 2.34
2154 4927 3.587061 TCTGGATCCTCAGCCACTTTTAA 59.413 43.478 14.23 0.00 31.09 1.52
2155 4928 3.686016 TGGATCCTCAGCCACTTTTAAC 58.314 45.455 14.23 0.00 31.09 2.01
2159 4932 3.486383 TCCTCAGCCACTTTTAACCAAG 58.514 45.455 0.00 0.00 0.00 3.61
2160 4933 2.558359 CCTCAGCCACTTTTAACCAAGG 59.442 50.000 0.00 0.00 0.00 3.61
2162 4935 2.175931 TCAGCCACTTTTAACCAAGGGA 59.824 45.455 0.00 0.00 27.07 4.20
2163 4936 2.962421 CAGCCACTTTTAACCAAGGGAA 59.038 45.455 0.00 0.00 27.07 3.97
2164 4937 3.005791 CAGCCACTTTTAACCAAGGGAAG 59.994 47.826 0.00 0.00 27.07 3.46
2167 4940 4.211920 CCACTTTTAACCAAGGGAAGTCA 58.788 43.478 0.00 0.00 27.07 3.41
2169 4942 5.451381 CCACTTTTAACCAAGGGAAGTCAAC 60.451 44.000 0.00 0.00 27.07 3.18
2182 6031 5.045286 AGGGAAGTCAACTGCATAGAAAGAT 60.045 40.000 0.00 0.00 0.00 2.40
2183 6032 5.295540 GGGAAGTCAACTGCATAGAAAGATC 59.704 44.000 0.00 0.00 0.00 2.75
2184 6033 6.112058 GGAAGTCAACTGCATAGAAAGATCT 58.888 40.000 0.00 0.00 39.82 2.75
2185 6034 6.597280 GGAAGTCAACTGCATAGAAAGATCTT 59.403 38.462 0.88 0.88 37.10 2.40
2186 6035 6.981762 AGTCAACTGCATAGAAAGATCTTG 57.018 37.500 9.17 0.00 37.10 3.02
2187 6036 5.879223 AGTCAACTGCATAGAAAGATCTTGG 59.121 40.000 9.17 0.00 37.10 3.61
2188 6037 5.645497 GTCAACTGCATAGAAAGATCTTGGT 59.355 40.000 9.17 1.77 37.10 3.67
2218 6176 4.583871 AGGGAAGTCAACTGCATAGAAAG 58.416 43.478 0.00 0.00 0.00 2.62
2303 6262 2.546778 CAGTACACACGTCCTTGTTGT 58.453 47.619 0.00 0.00 0.00 3.32
2316 6275 5.660460 GTCCTTGTTGTTTGTGGATCTTTT 58.340 37.500 0.00 0.00 0.00 2.27
2389 6986 6.183360 TGCTGTCTGTAAAATGTGTGGAAATT 60.183 34.615 0.00 0.00 0.00 1.82
2470 7125 6.642683 ACGATCTTCCTTTGTAACATAACG 57.357 37.500 0.00 0.00 0.00 3.18
2543 7201 3.269178 CTTCAGGATCTGGTTGAGAAGC 58.731 50.000 0.00 0.00 33.12 3.86
2671 7427 6.714810 TGTGGTCTTGCTATTACATTCTTGTT 59.285 34.615 0.00 0.00 37.28 2.83
2672 7428 7.230510 TGTGGTCTTGCTATTACATTCTTGTTT 59.769 33.333 0.00 0.00 37.28 2.83
2673 7429 7.750903 GTGGTCTTGCTATTACATTCTTGTTTC 59.249 37.037 0.00 0.00 37.28 2.78
2754 7579 3.780294 ACTGCCAGGATGTATGGACTTTA 59.220 43.478 0.00 0.00 40.51 1.85
2755 7580 4.227300 ACTGCCAGGATGTATGGACTTTAA 59.773 41.667 0.00 0.00 40.51 1.52
2756 7581 4.523083 TGCCAGGATGTATGGACTTTAAC 58.477 43.478 0.00 0.00 40.51 2.01
2757 7582 4.227300 TGCCAGGATGTATGGACTTTAACT 59.773 41.667 0.00 0.00 40.51 2.24
2758 7583 5.193679 GCCAGGATGTATGGACTTTAACTT 58.806 41.667 0.00 0.00 40.51 2.66
2759 7584 5.297029 GCCAGGATGTATGGACTTTAACTTC 59.703 44.000 0.00 0.00 40.51 3.01
2760 7585 6.414732 CCAGGATGTATGGACTTTAACTTCA 58.585 40.000 0.00 0.00 40.51 3.02
2761 7586 7.056635 CCAGGATGTATGGACTTTAACTTCAT 58.943 38.462 0.00 0.00 40.51 2.57
2762 7587 7.557719 CCAGGATGTATGGACTTTAACTTCATT 59.442 37.037 0.00 0.00 40.51 2.57
2763 7588 8.616076 CAGGATGTATGGACTTTAACTTCATTC 58.384 37.037 0.00 0.00 0.00 2.67
2764 7589 8.552296 AGGATGTATGGACTTTAACTTCATTCT 58.448 33.333 0.00 0.00 0.00 2.40
2765 7590 8.616076 GGATGTATGGACTTTAACTTCATTCTG 58.384 37.037 0.00 0.00 0.00 3.02
2766 7591 9.167311 GATGTATGGACTTTAACTTCATTCTGT 57.833 33.333 0.00 0.00 0.00 3.41
2767 7592 8.918202 TGTATGGACTTTAACTTCATTCTGTT 57.082 30.769 0.00 0.00 0.00 3.16
2768 7593 8.999431 TGTATGGACTTTAACTTCATTCTGTTC 58.001 33.333 0.00 0.00 0.00 3.18
2769 7594 8.999431 GTATGGACTTTAACTTCATTCTGTTCA 58.001 33.333 0.00 0.00 0.00 3.18
2770 7595 8.641498 ATGGACTTTAACTTCATTCTGTTCAT 57.359 30.769 0.00 0.00 0.00 2.57
2771 7596 8.463930 TGGACTTTAACTTCATTCTGTTCATT 57.536 30.769 0.00 0.00 0.00 2.57
2772 7597 8.912988 TGGACTTTAACTTCATTCTGTTCATTT 58.087 29.630 0.00 0.00 0.00 2.32
2773 7598 9.399403 GGACTTTAACTTCATTCTGTTCATTTC 57.601 33.333 0.00 0.00 0.00 2.17
2778 7603 9.950680 TTAACTTCATTCTGTTCATTTCTTGTC 57.049 29.630 0.00 0.00 0.00 3.18
2779 7604 7.572523 ACTTCATTCTGTTCATTTCTTGTCA 57.427 32.000 0.00 0.00 0.00 3.58
2780 7605 7.999679 ACTTCATTCTGTTCATTTCTTGTCAA 58.000 30.769 0.00 0.00 0.00 3.18
2781 7606 8.469200 ACTTCATTCTGTTCATTTCTTGTCAAA 58.531 29.630 0.00 0.00 0.00 2.69
2782 7607 9.472361 CTTCATTCTGTTCATTTCTTGTCAAAT 57.528 29.630 0.00 0.00 0.00 2.32
2806 7631 8.916628 ATAGATTTTTCATAGAGAAGGAAGGC 57.083 34.615 0.00 0.00 37.57 4.35
2807 7632 6.725364 AGATTTTTCATAGAGAAGGAAGGCA 58.275 36.000 0.00 0.00 37.57 4.75
2808 7633 7.177878 AGATTTTTCATAGAGAAGGAAGGCAA 58.822 34.615 0.00 0.00 37.57 4.52
2809 7634 7.671398 AGATTTTTCATAGAGAAGGAAGGCAAA 59.329 33.333 0.00 0.00 37.57 3.68
2810 7635 7.781324 TTTTTCATAGAGAAGGAAGGCAAAT 57.219 32.000 0.00 0.00 37.57 2.32
2811 7636 8.877864 TTTTTCATAGAGAAGGAAGGCAAATA 57.122 30.769 0.00 0.00 37.57 1.40
2812 7637 9.479549 TTTTTCATAGAGAAGGAAGGCAAATAT 57.520 29.630 0.00 0.00 37.57 1.28
2813 7638 8.455903 TTTCATAGAGAAGGAAGGCAAATATG 57.544 34.615 0.00 0.00 37.57 1.78
2814 7639 7.141758 TCATAGAGAAGGAAGGCAAATATGT 57.858 36.000 0.00 0.00 0.00 2.29
2815 7640 7.577303 TCATAGAGAAGGAAGGCAAATATGTT 58.423 34.615 0.00 0.00 0.00 2.71
2816 7641 7.716998 TCATAGAGAAGGAAGGCAAATATGTTC 59.283 37.037 0.00 0.00 0.00 3.18
2817 7642 5.819991 AGAGAAGGAAGGCAAATATGTTCA 58.180 37.500 0.00 0.00 0.00 3.18
2818 7643 5.884792 AGAGAAGGAAGGCAAATATGTTCAG 59.115 40.000 0.00 0.00 0.00 3.02
2819 7644 5.819991 AGAAGGAAGGCAAATATGTTCAGA 58.180 37.500 0.00 0.00 0.00 3.27
2820 7645 6.248433 AGAAGGAAGGCAAATATGTTCAGAA 58.752 36.000 0.00 0.00 0.00 3.02
2821 7646 5.904362 AGGAAGGCAAATATGTTCAGAAC 57.096 39.130 6.32 6.32 0.00 3.01
2822 7647 4.396166 AGGAAGGCAAATATGTTCAGAACG 59.604 41.667 8.80 0.00 0.00 3.95
2823 7648 4.156008 GGAAGGCAAATATGTTCAGAACGT 59.844 41.667 12.73 12.73 0.00 3.99
2824 7649 4.685169 AGGCAAATATGTTCAGAACGTG 57.315 40.909 17.07 7.18 0.00 4.49
2825 7650 4.323417 AGGCAAATATGTTCAGAACGTGA 58.677 39.130 17.07 1.56 0.00 4.35
2826 7651 4.393062 AGGCAAATATGTTCAGAACGTGAG 59.607 41.667 17.07 6.22 36.21 3.51
2827 7652 4.437390 GGCAAATATGTTCAGAACGTGAGG 60.437 45.833 17.07 6.20 36.21 3.86
2828 7653 4.391830 GCAAATATGTTCAGAACGTGAGGA 59.608 41.667 17.07 0.00 36.21 3.71
2829 7654 5.446473 GCAAATATGTTCAGAACGTGAGGAG 60.446 44.000 17.07 5.62 36.21 3.69
2830 7655 2.086054 ATGTTCAGAACGTGAGGAGC 57.914 50.000 7.25 0.00 36.21 4.70
2831 7656 0.750249 TGTTCAGAACGTGAGGAGCA 59.250 50.000 8.80 0.00 36.21 4.26
2832 7657 1.140816 GTTCAGAACGTGAGGAGCAC 58.859 55.000 0.00 0.00 44.21 4.40
2833 7658 0.033504 TTCAGAACGTGAGGAGCACC 59.966 55.000 0.00 0.00 44.85 5.01
2834 7659 1.112916 TCAGAACGTGAGGAGCACCA 61.113 55.000 2.07 0.00 44.85 4.17
2835 7660 0.668706 CAGAACGTGAGGAGCACCAG 60.669 60.000 2.07 0.00 44.85 4.00
2836 7661 1.374758 GAACGTGAGGAGCACCAGG 60.375 63.158 2.07 0.00 44.85 4.45
2837 7662 2.100879 GAACGTGAGGAGCACCAGGT 62.101 60.000 2.07 0.00 44.85 4.00
2838 7663 1.696097 AACGTGAGGAGCACCAGGTT 61.696 55.000 2.07 0.00 44.85 3.50
2839 7664 1.071471 CGTGAGGAGCACCAGGTTT 59.929 57.895 2.07 0.00 44.85 3.27
2840 7665 1.230635 CGTGAGGAGCACCAGGTTTG 61.231 60.000 2.07 0.00 44.85 2.93
2841 7666 0.179018 GTGAGGAGCACCAGGTTTGT 60.179 55.000 2.07 0.00 41.78 2.83
2842 7667 0.108585 TGAGGAGCACCAGGTTTGTC 59.891 55.000 2.07 0.00 38.94 3.18
2843 7668 0.398318 GAGGAGCACCAGGTTTGTCT 59.602 55.000 2.07 0.00 38.94 3.41
2844 7669 0.398318 AGGAGCACCAGGTTTGTCTC 59.602 55.000 2.07 0.00 38.94 3.36
2845 7670 0.606673 GGAGCACCAGGTTTGTCTCC 60.607 60.000 9.89 9.89 33.25 3.71
2846 7671 0.108585 GAGCACCAGGTTTGTCTCCA 59.891 55.000 0.00 0.00 0.00 3.86
2847 7672 0.773644 AGCACCAGGTTTGTCTCCAT 59.226 50.000 0.00 0.00 0.00 3.41
2848 7673 1.145738 AGCACCAGGTTTGTCTCCATT 59.854 47.619 0.00 0.00 0.00 3.16
2849 7674 1.963515 GCACCAGGTTTGTCTCCATTT 59.036 47.619 0.00 0.00 0.00 2.32
2850 7675 2.365293 GCACCAGGTTTGTCTCCATTTT 59.635 45.455 0.00 0.00 0.00 1.82
2851 7676 3.799917 GCACCAGGTTTGTCTCCATTTTG 60.800 47.826 0.00 0.00 0.00 2.44
2852 7677 2.365293 ACCAGGTTTGTCTCCATTTTGC 59.635 45.455 0.00 0.00 0.00 3.68
2853 7678 2.289010 CCAGGTTTGTCTCCATTTTGCC 60.289 50.000 0.00 0.00 0.00 4.52
2854 7679 2.629617 CAGGTTTGTCTCCATTTTGCCT 59.370 45.455 0.00 0.00 0.00 4.75
2855 7680 3.826157 CAGGTTTGTCTCCATTTTGCCTA 59.174 43.478 0.00 0.00 0.00 3.93
2856 7681 4.280677 CAGGTTTGTCTCCATTTTGCCTAA 59.719 41.667 0.00 0.00 0.00 2.69
2857 7682 5.047092 CAGGTTTGTCTCCATTTTGCCTAAT 60.047 40.000 0.00 0.00 0.00 1.73
2858 7683 5.047092 AGGTTTGTCTCCATTTTGCCTAATG 60.047 40.000 1.89 1.89 35.70 1.90
2859 7684 5.279456 GGTTTGTCTCCATTTTGCCTAATGT 60.279 40.000 7.01 0.00 34.42 2.71
2860 7685 5.389859 TTGTCTCCATTTTGCCTAATGTG 57.610 39.130 7.01 1.55 34.42 3.21
2861 7686 4.661222 TGTCTCCATTTTGCCTAATGTGA 58.339 39.130 7.01 3.34 34.42 3.58
2862 7687 5.076182 TGTCTCCATTTTGCCTAATGTGAA 58.924 37.500 7.01 0.00 34.42 3.18
2863 7688 5.048083 TGTCTCCATTTTGCCTAATGTGAAC 60.048 40.000 7.01 3.50 34.42 3.18
2864 7689 4.155826 TCTCCATTTTGCCTAATGTGAACG 59.844 41.667 7.01 0.00 34.42 3.95
2865 7690 3.823873 TCCATTTTGCCTAATGTGAACGT 59.176 39.130 7.01 0.00 34.42 3.99
2866 7691 4.279671 TCCATTTTGCCTAATGTGAACGTT 59.720 37.500 0.00 0.00 34.42 3.99
2867 7692 4.621034 CCATTTTGCCTAATGTGAACGTTC 59.379 41.667 21.42 21.42 34.42 3.95
2868 7693 4.902443 TTTTGCCTAATGTGAACGTTCA 57.098 36.364 26.53 26.53 34.20 3.18
2869 7694 4.902443 TTTGCCTAATGTGAACGTTCAA 57.098 36.364 31.20 20.94 39.21 2.69
2870 7695 4.902443 TTGCCTAATGTGAACGTTCAAA 57.098 36.364 31.20 27.07 39.21 2.69
2871 7696 5.446143 TTGCCTAATGTGAACGTTCAAAT 57.554 34.783 31.20 28.05 39.21 2.32
2872 7697 5.446143 TGCCTAATGTGAACGTTCAAATT 57.554 34.783 36.39 36.39 44.88 1.82
2873 7698 5.837437 TGCCTAATGTGAACGTTCAAATTT 58.163 33.333 38.27 28.27 41.20 1.82
2874 7699 5.689514 TGCCTAATGTGAACGTTCAAATTTG 59.310 36.000 38.27 34.78 41.20 2.32
2875 7700 5.918011 GCCTAATGTGAACGTTCAAATTTGA 59.082 36.000 38.27 25.91 41.20 2.69
2876 7701 6.586082 GCCTAATGTGAACGTTCAAATTTGAT 59.414 34.615 38.27 23.92 41.20 2.57
2877 7702 7.410728 GCCTAATGTGAACGTTCAAATTTGATG 60.411 37.037 38.27 27.33 41.20 3.07
2878 7703 7.594758 CCTAATGTGAACGTTCAAATTTGATGT 59.405 33.333 38.27 23.03 41.20 3.06
2879 7704 6.752335 ATGTGAACGTTCAAATTTGATGTG 57.248 33.333 31.20 15.36 39.21 3.21
2880 7705 4.502282 TGTGAACGTTCAAATTTGATGTGC 59.498 37.500 31.20 19.61 39.21 4.57
2881 7706 4.502282 GTGAACGTTCAAATTTGATGTGCA 59.498 37.500 31.20 21.98 39.21 4.57
2882 7707 5.175491 GTGAACGTTCAAATTTGATGTGCAT 59.825 36.000 31.20 13.59 39.21 3.96
2883 7708 5.175308 TGAACGTTCAAATTTGATGTGCATG 59.825 36.000 27.94 15.17 37.00 4.06
2884 7709 4.869215 ACGTTCAAATTTGATGTGCATGA 58.131 34.783 21.10 1.34 37.00 3.07
2885 7710 5.288015 ACGTTCAAATTTGATGTGCATGAA 58.712 33.333 21.10 0.61 37.00 2.57
2886 7711 5.752472 ACGTTCAAATTTGATGTGCATGAAA 59.248 32.000 21.10 0.00 37.00 2.69
2887 7712 6.424509 ACGTTCAAATTTGATGTGCATGAAAT 59.575 30.769 21.10 4.24 36.43 2.17
2888 7713 7.598118 ACGTTCAAATTTGATGTGCATGAAATA 59.402 29.630 21.10 0.00 34.36 1.40
2889 7714 8.597227 CGTTCAAATTTGATGTGCATGAAATAT 58.403 29.630 21.10 0.00 34.36 1.28
2890 7715 9.910511 GTTCAAATTTGATGTGCATGAAATATC 57.089 29.630 21.10 0.00 34.36 1.63
2891 7716 9.654663 TTCAAATTTGATGTGCATGAAATATCA 57.345 25.926 21.10 0.30 34.36 2.15
2892 7717 9.308318 TCAAATTTGATGTGCATGAAATATCAG 57.692 29.630 16.91 2.60 34.36 2.90
2893 7718 8.547894 CAAATTTGATGTGCATGAAATATCAGG 58.452 33.333 13.08 0.00 39.39 3.86
2894 7719 7.591421 ATTTGATGTGCATGAAATATCAGGA 57.409 32.000 7.61 0.00 39.70 3.86
2895 7720 7.591421 TTTGATGTGCATGAAATATCAGGAT 57.409 32.000 0.00 0.00 39.70 3.24
2896 7721 6.569179 TGATGTGCATGAAATATCAGGATG 57.431 37.500 0.00 0.00 39.70 3.51
2910 7735 3.365472 TCAGGATGAAAGTCCGAGATCA 58.635 45.455 0.00 0.00 45.97 2.92
2911 7736 3.131223 TCAGGATGAAAGTCCGAGATCAC 59.869 47.826 0.00 0.00 45.97 3.06
2912 7737 3.099905 AGGATGAAAGTCCGAGATCACA 58.900 45.455 0.00 0.00 43.27 3.58
2913 7738 3.515502 AGGATGAAAGTCCGAGATCACAA 59.484 43.478 0.00 0.00 43.27 3.33
2914 7739 3.868077 GGATGAAAGTCCGAGATCACAAG 59.132 47.826 0.00 0.00 0.00 3.16
2915 7740 4.382040 GGATGAAAGTCCGAGATCACAAGA 60.382 45.833 0.00 0.00 0.00 3.02
2916 7741 4.808414 TGAAAGTCCGAGATCACAAGAT 57.192 40.909 0.00 0.00 37.13 2.40
2917 7742 5.914898 TGAAAGTCCGAGATCACAAGATA 57.085 39.130 0.00 0.00 33.72 1.98
2918 7743 5.651530 TGAAAGTCCGAGATCACAAGATAC 58.348 41.667 0.00 0.00 33.72 2.24
2919 7744 5.419155 TGAAAGTCCGAGATCACAAGATACT 59.581 40.000 0.00 0.00 33.72 2.12
2920 7745 5.923733 AAGTCCGAGATCACAAGATACTT 57.076 39.130 0.00 0.00 33.72 2.24
2921 7746 5.923733 AGTCCGAGATCACAAGATACTTT 57.076 39.130 0.00 0.00 33.72 2.66
2922 7747 5.655488 AGTCCGAGATCACAAGATACTTTG 58.345 41.667 0.00 0.00 33.72 2.77
2923 7748 4.806247 GTCCGAGATCACAAGATACTTTGG 59.194 45.833 0.00 0.00 33.72 3.28
2924 7749 4.466370 TCCGAGATCACAAGATACTTTGGT 59.534 41.667 0.00 0.00 33.72 3.67
2925 7750 5.046591 TCCGAGATCACAAGATACTTTGGTT 60.047 40.000 0.00 0.00 33.72 3.67
2926 7751 5.292101 CCGAGATCACAAGATACTTTGGTTC 59.708 44.000 0.00 0.00 33.72 3.62
2927 7752 5.869344 CGAGATCACAAGATACTTTGGTTCA 59.131 40.000 0.00 0.00 33.72 3.18
2928 7753 6.536582 CGAGATCACAAGATACTTTGGTTCAT 59.463 38.462 0.00 0.00 33.72 2.57
2929 7754 7.465111 CGAGATCACAAGATACTTTGGTTCATG 60.465 40.741 0.00 0.00 33.72 3.07
2930 7755 6.600822 AGATCACAAGATACTTTGGTTCATGG 59.399 38.462 0.00 0.00 33.72 3.66
2931 7756 5.630121 TCACAAGATACTTTGGTTCATGGT 58.370 37.500 0.00 0.00 32.32 3.55
2932 7757 6.068010 TCACAAGATACTTTGGTTCATGGTT 58.932 36.000 0.00 0.00 32.32 3.67
2933 7758 6.206634 TCACAAGATACTTTGGTTCATGGTTC 59.793 38.462 0.00 0.00 32.32 3.62
2934 7759 5.476945 ACAAGATACTTTGGTTCATGGTTCC 59.523 40.000 0.00 0.00 32.32 3.62
2935 7760 5.520748 AGATACTTTGGTTCATGGTTCCT 57.479 39.130 0.00 0.00 0.00 3.36
2936 7761 5.256474 AGATACTTTGGTTCATGGTTCCTG 58.744 41.667 0.00 0.00 0.00 3.86
2937 7762 3.312736 ACTTTGGTTCATGGTTCCTGT 57.687 42.857 0.00 0.00 0.00 4.00
2938 7763 4.447138 ACTTTGGTTCATGGTTCCTGTA 57.553 40.909 0.00 0.00 0.00 2.74
2939 7764 4.142038 ACTTTGGTTCATGGTTCCTGTAC 58.858 43.478 0.00 0.00 0.00 2.90
2940 7765 2.465860 TGGTTCATGGTTCCTGTACG 57.534 50.000 0.00 0.00 0.00 3.67
2941 7766 1.972075 TGGTTCATGGTTCCTGTACGA 59.028 47.619 0.00 0.00 0.00 3.43
2942 7767 2.569853 TGGTTCATGGTTCCTGTACGAT 59.430 45.455 0.00 0.00 0.00 3.73
2943 7768 2.936498 GGTTCATGGTTCCTGTACGATG 59.064 50.000 0.00 0.00 36.09 3.84
2944 7769 3.369052 GGTTCATGGTTCCTGTACGATGA 60.369 47.826 0.00 0.00 40.17 2.92
2945 7770 4.250464 GTTCATGGTTCCTGTACGATGAA 58.750 43.478 9.22 9.22 45.12 2.57
2946 7771 3.857052 TCATGGTTCCTGTACGATGAAC 58.143 45.455 11.45 11.45 39.35 3.18
2947 7772 3.513912 TCATGGTTCCTGTACGATGAACT 59.486 43.478 16.59 1.86 39.35 3.01
2948 7773 3.313012 TGGTTCCTGTACGATGAACTG 57.687 47.619 16.59 0.00 38.68 3.16
2949 7774 2.631062 TGGTTCCTGTACGATGAACTGT 59.369 45.455 16.59 0.00 38.68 3.55
2950 7775 3.070446 TGGTTCCTGTACGATGAACTGTT 59.930 43.478 16.59 0.00 38.68 3.16
2951 7776 3.678548 GGTTCCTGTACGATGAACTGTTC 59.321 47.826 13.49 13.49 38.68 3.18
2952 7777 4.304110 GTTCCTGTACGATGAACTGTTCA 58.696 43.478 23.94 23.94 45.01 3.18
2953 7778 4.174411 TCCTGTACGATGAACTGTTCAG 57.826 45.455 25.40 16.45 43.98 3.02
2954 7779 3.824443 TCCTGTACGATGAACTGTTCAGA 59.176 43.478 25.40 13.38 43.98 3.27
2955 7780 4.279922 TCCTGTACGATGAACTGTTCAGAA 59.720 41.667 25.40 10.20 43.98 3.02
2956 7781 4.988540 CCTGTACGATGAACTGTTCAGAAA 59.011 41.667 25.40 10.51 43.98 2.52
2957 7782 5.119279 CCTGTACGATGAACTGTTCAGAAAG 59.881 44.000 25.40 18.12 43.98 2.62
2958 7783 5.838529 TGTACGATGAACTGTTCAGAAAGA 58.161 37.500 25.40 9.42 43.98 2.52
2959 7784 6.455647 TGTACGATGAACTGTTCAGAAAGAT 58.544 36.000 25.40 10.14 43.98 2.40
2960 7785 6.929049 TGTACGATGAACTGTTCAGAAAGATT 59.071 34.615 25.40 9.46 43.98 2.40
2961 7786 8.085909 TGTACGATGAACTGTTCAGAAAGATTA 58.914 33.333 25.40 9.17 43.98 1.75
2962 7787 9.088512 GTACGATGAACTGTTCAGAAAGATTAT 57.911 33.333 25.40 8.09 43.98 1.28
2963 7788 8.553459 ACGATGAACTGTTCAGAAAGATTATT 57.447 30.769 25.40 7.41 43.98 1.40
2964 7789 9.003658 ACGATGAACTGTTCAGAAAGATTATTT 57.996 29.630 25.40 6.93 43.98 1.40
2965 7790 9.831737 CGATGAACTGTTCAGAAAGATTATTTT 57.168 29.630 25.40 6.74 43.98 1.82
3013 7838 9.562408 TGTTAACTATTGGTTGTGATAGTTTGA 57.438 29.630 12.35 2.56 43.12 2.69
3016 7841 7.630242 ACTATTGGTTGTGATAGTTTGATGG 57.370 36.000 0.00 0.00 36.02 3.51
3017 7842 7.402054 ACTATTGGTTGTGATAGTTTGATGGA 58.598 34.615 0.00 0.00 36.02 3.41
3018 7843 7.888021 ACTATTGGTTGTGATAGTTTGATGGAA 59.112 33.333 0.00 0.00 36.02 3.53
3019 7844 6.573664 TTGGTTGTGATAGTTTGATGGAAG 57.426 37.500 0.00 0.00 0.00 3.46
3020 7845 4.458989 TGGTTGTGATAGTTTGATGGAAGC 59.541 41.667 0.00 0.00 0.00 3.86
3021 7846 4.702131 GGTTGTGATAGTTTGATGGAAGCT 59.298 41.667 0.00 0.00 0.00 3.74
3022 7847 5.392380 GGTTGTGATAGTTTGATGGAAGCTG 60.392 44.000 0.00 0.00 0.00 4.24
3023 7848 5.164620 TGTGATAGTTTGATGGAAGCTGA 57.835 39.130 0.00 0.00 0.00 4.26
3024 7849 5.559770 TGTGATAGTTTGATGGAAGCTGAA 58.440 37.500 0.00 0.00 0.00 3.02
3025 7850 6.182627 TGTGATAGTTTGATGGAAGCTGAAT 58.817 36.000 0.00 0.00 0.00 2.57
3026 7851 6.317140 TGTGATAGTTTGATGGAAGCTGAATC 59.683 38.462 0.00 0.00 0.00 2.52
3027 7852 5.525012 TGATAGTTTGATGGAAGCTGAATCG 59.475 40.000 0.00 0.00 0.00 3.34
3028 7853 3.679389 AGTTTGATGGAAGCTGAATCGT 58.321 40.909 0.00 0.00 0.00 3.73
3029 7854 4.832248 AGTTTGATGGAAGCTGAATCGTA 58.168 39.130 0.00 0.00 0.00 3.43
3030 7855 4.631813 AGTTTGATGGAAGCTGAATCGTAC 59.368 41.667 0.00 0.00 0.00 3.67
3031 7856 4.471904 TTGATGGAAGCTGAATCGTACT 57.528 40.909 0.00 0.00 0.00 2.73
3032 7857 4.471904 TGATGGAAGCTGAATCGTACTT 57.528 40.909 0.00 0.00 0.00 2.24
3033 7858 4.183865 TGATGGAAGCTGAATCGTACTTG 58.816 43.478 0.00 0.00 0.00 3.16
3034 7859 3.678056 TGGAAGCTGAATCGTACTTGT 57.322 42.857 0.00 0.00 0.00 3.16
3035 7860 4.794278 TGGAAGCTGAATCGTACTTGTA 57.206 40.909 0.00 0.00 0.00 2.41
3036 7861 4.491676 TGGAAGCTGAATCGTACTTGTAC 58.508 43.478 0.00 1.13 0.00 2.90
3037 7862 4.219944 TGGAAGCTGAATCGTACTTGTACT 59.780 41.667 8.94 0.00 0.00 2.73
3038 7863 4.563184 GGAAGCTGAATCGTACTTGTACTG 59.437 45.833 8.94 3.71 0.00 2.74
3039 7864 4.785511 AGCTGAATCGTACTTGTACTGT 57.214 40.909 8.94 0.00 0.00 3.55
3040 7865 5.135508 AGCTGAATCGTACTTGTACTGTT 57.864 39.130 8.94 4.06 0.00 3.16
3041 7866 4.923871 AGCTGAATCGTACTTGTACTGTTG 59.076 41.667 8.94 0.00 0.00 3.33
3042 7867 4.684703 GCTGAATCGTACTTGTACTGTTGT 59.315 41.667 8.94 0.00 0.00 3.32
3043 7868 5.176958 GCTGAATCGTACTTGTACTGTTGTT 59.823 40.000 8.94 0.00 0.00 2.83
3044 7869 6.519353 TGAATCGTACTTGTACTGTTGTTG 57.481 37.500 8.94 0.00 0.00 3.33
3045 7870 6.274579 TGAATCGTACTTGTACTGTTGTTGA 58.725 36.000 8.94 0.00 0.00 3.18
3046 7871 6.419710 TGAATCGTACTTGTACTGTTGTTGAG 59.580 38.462 8.94 0.00 0.00 3.02
3047 7872 5.252969 TCGTACTTGTACTGTTGTTGAGT 57.747 39.130 8.94 0.00 0.00 3.41
3048 7873 5.653507 TCGTACTTGTACTGTTGTTGAGTT 58.346 37.500 8.94 0.00 0.00 3.01
3049 7874 6.101332 TCGTACTTGTACTGTTGTTGAGTTT 58.899 36.000 8.94 0.00 0.00 2.66
3050 7875 7.257003 TCGTACTTGTACTGTTGTTGAGTTTA 58.743 34.615 8.94 0.00 0.00 2.01
3051 7876 7.922278 TCGTACTTGTACTGTTGTTGAGTTTAT 59.078 33.333 8.94 0.00 0.00 1.40
3052 7877 8.212495 CGTACTTGTACTGTTGTTGAGTTTATC 58.788 37.037 8.94 0.00 0.00 1.75
3053 7878 9.037737 GTACTTGTACTGTTGTTGAGTTTATCA 57.962 33.333 3.88 0.00 35.62 2.15
3054 7879 8.677148 ACTTGTACTGTTGTTGAGTTTATCAT 57.323 30.769 0.00 0.00 37.89 2.45
3055 7880 9.772973 ACTTGTACTGTTGTTGAGTTTATCATA 57.227 29.630 0.00 0.00 37.89 2.15
3057 7882 9.549078 TTGTACTGTTGTTGAGTTTATCATACA 57.451 29.630 0.00 0.00 37.89 2.29
3119 7944 9.661563 TTTTCGTAGAGAAGGAAAGCAAATATA 57.338 29.630 0.00 0.00 41.56 0.86
3120 8251 9.832445 TTTCGTAGAGAAGGAAAGCAAATATAT 57.168 29.630 0.00 0.00 40.40 0.86
3121 8252 9.832445 TTCGTAGAGAAGGAAAGCAAATATATT 57.168 29.630 0.00 0.00 38.43 1.28
3122 8253 9.477484 TCGTAGAGAAGGAAAGCAAATATATTC 57.523 33.333 0.00 0.00 0.00 1.75
3123 8254 9.261180 CGTAGAGAAGGAAAGCAAATATATTCA 57.739 33.333 0.00 0.00 0.00 2.57
3133 8264 9.241317 GAAAGCAAATATATTCAAGACATGTGG 57.759 33.333 1.15 0.00 0.00 4.17
3200 8333 7.465353 TTTGAAGTGCATGAAATATCAGGAA 57.535 32.000 0.00 0.00 39.70 3.36
3459 8924 7.170151 ACAGTGGTTTTAAAAACCGAATATTGC 59.830 33.333 13.33 0.00 43.15 3.56
3581 9057 4.516698 CCCATCAATGAAGTAAGGAATCGG 59.483 45.833 0.00 0.00 0.00 4.18
3606 9082 1.337447 TGGTTTCTTCTAACGAGGCGG 60.337 52.381 0.00 0.00 0.00 6.13
4623 10258 3.856521 CAGTTCTTCAGCACGTATGAGAG 59.143 47.826 3.22 4.94 0.00 3.20
4775 10413 2.496070 GCACAGTGAGGAGTATGTACCA 59.504 50.000 4.15 0.00 0.00 3.25
5390 11183 0.593128 GCCGTTGAATGAGTGTTGCT 59.407 50.000 0.00 0.00 0.00 3.91
5436 11232 0.680921 ATGCACCGATGAAGTTGGGG 60.681 55.000 0.00 0.00 37.90 4.96
5437 11233 1.303317 GCACCGATGAAGTTGGGGT 60.303 57.895 0.00 0.00 37.09 4.95
5559 11770 5.300286 AGCCATATACTTGTGCATTCTTTCC 59.700 40.000 0.00 0.00 0.00 3.13
5578 11814 1.431488 CGGTGCCACTGGATTGATCG 61.431 60.000 0.00 0.00 0.00 3.69
5649 11885 9.619316 CGTGATTGGTTTATTTGTGATTCTTTA 57.381 29.630 0.00 0.00 0.00 1.85
5796 12660 7.899178 TGAACATTTATACTCTTTCGCTTGA 57.101 32.000 0.00 0.00 0.00 3.02
5868 12733 4.180946 CCAGCTCTCGGACGACGG 62.181 72.222 0.00 0.00 44.45 4.79
6066 12996 7.332926 ACGTTCCAATATATCATTGCTCATCTC 59.667 37.037 0.00 0.00 0.00 2.75
6083 13013 3.603965 TCTCTCTAGTTCTGATCCCCC 57.396 52.381 0.00 0.00 0.00 5.40
6291 13229 0.321021 TTCGCCCGTTTGGTTAGCTA 59.679 50.000 0.00 0.00 36.04 3.32
6339 13277 0.465460 AACCTCAAAGCACCGCTCAA 60.465 50.000 0.00 0.00 38.25 3.02
6369 13307 0.811281 GAAAACCCCTGAATCGGCAG 59.189 55.000 0.00 0.00 35.66 4.85
6375 13313 0.322456 CCCTGAATCGGCAGTTTCCA 60.322 55.000 5.39 0.00 34.06 3.53
6376 13314 1.533625 CCTGAATCGGCAGTTTCCAA 58.466 50.000 5.39 0.00 34.06 3.53
6396 13334 4.113617 AGCCAAGCTCTCCGTGTA 57.886 55.556 0.00 0.00 30.62 2.90
6410 13348 0.611200 CGTGTACATGGAGGGGAACA 59.389 55.000 7.22 0.00 0.00 3.18
6450 13393 2.202756 GGGAGAGCGCGAAATCGT 60.203 61.111 12.10 0.00 42.22 3.73
6463 13406 3.642778 AATCGTGTGCGTCCCCGAG 62.643 63.158 0.00 0.00 39.49 4.63
6551 13856 6.641169 TGTTGTAGCCTAGATCTATGAGTG 57.359 41.667 9.02 0.00 0.00 3.51
6561 13866 7.144661 CCTAGATCTATGAGTGTGTGCTAAAG 58.855 42.308 2.11 0.00 0.00 1.85
6600 13905 4.900054 AGTAGTAGGGTAGGTTATGCAAGG 59.100 45.833 0.00 0.00 0.00 3.61
6627 13932 4.756642 TCTTCATGAATGTTGTGTGAGGAC 59.243 41.667 8.96 0.00 0.00 3.85
6684 13989 6.128117 GGTTTATGATAGGTTTTGCTTGTCGA 60.128 38.462 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 4.311613 TCCTTTTCCCTTTCCCCATTTTT 58.688 39.130 0.00 0.00 0.00 1.94
100 102 3.423058 TTTTCCTTTTCCCTTTCCCCA 57.577 42.857 0.00 0.00 0.00 4.96
101 103 3.072476 CCTTTTTCCTTTTCCCTTTCCCC 59.928 47.826 0.00 0.00 0.00 4.81
133 137 9.990360 TTACACCTTTTGTTCTTTTCTCTTTTT 57.010 25.926 0.00 0.00 39.91 1.94
134 138 9.990360 TTTACACCTTTTGTTCTTTTCTCTTTT 57.010 25.926 0.00 0.00 39.91 2.27
149 153 9.369904 GATTGCATACATCATTTTACACCTTTT 57.630 29.630 0.00 0.00 0.00 2.27
182 186 2.282462 CCAACCAGCCACCTCACC 60.282 66.667 0.00 0.00 0.00 4.02
183 187 0.109723 TAACCAACCAGCCACCTCAC 59.890 55.000 0.00 0.00 0.00 3.51
212 216 1.687612 CAACCTCCTGGATGCACCT 59.312 57.895 0.00 0.00 39.86 4.00
219 223 1.753903 TTGAATCCCAACCTCCTGGA 58.246 50.000 0.00 0.00 38.96 3.86
220 224 2.834638 ATTGAATCCCAACCTCCTGG 57.165 50.000 0.00 0.00 37.63 4.45
232 237 0.447801 AGCGCGGTGTGAATTGAATC 59.552 50.000 11.39 0.00 0.00 2.52
247 252 2.331194 ACATGCAAAAAGATTGAGCGC 58.669 42.857 0.00 0.00 0.00 5.92
261 266 1.268352 GGACGCCTGTTTAAACATGCA 59.732 47.619 33.35 11.43 46.55 3.96
263 268 3.848272 ATGGACGCCTGTTTAAACATG 57.152 42.857 20.83 18.51 38.41 3.21
266 271 5.110940 TGTAAATGGACGCCTGTTTAAAC 57.889 39.130 11.54 11.54 0.00 2.01
269 274 5.769484 TTTTGTAAATGGACGCCTGTTTA 57.231 34.783 0.00 0.00 0.00 2.01
279 331 7.013750 TCTGTTACTGTGCATTTTGTAAATGGA 59.986 33.333 12.53 7.97 0.00 3.41
306 359 0.652592 CCTATTTGGCGCTTCAGACG 59.347 55.000 7.64 0.00 0.00 4.18
307 360 2.024176 TCCTATTTGGCGCTTCAGAC 57.976 50.000 7.64 0.00 35.26 3.51
309 362 3.120060 GCATATCCTATTTGGCGCTTCAG 60.120 47.826 7.64 0.00 35.26 3.02
310 363 2.813754 GCATATCCTATTTGGCGCTTCA 59.186 45.455 7.64 0.00 35.26 3.02
311 364 2.162408 GGCATATCCTATTTGGCGCTTC 59.838 50.000 7.64 0.00 35.26 3.86
316 369 1.004277 TCCCGGCATATCCTATTTGGC 59.996 52.381 0.00 0.00 35.26 4.52
317 370 3.433306 TTCCCGGCATATCCTATTTGG 57.567 47.619 0.00 0.00 37.10 3.28
318 371 3.506067 GGTTTCCCGGCATATCCTATTTG 59.494 47.826 0.00 0.00 0.00 2.32
348 401 4.072839 AGAACTCATCTGACGTCACACTA 58.927 43.478 15.76 0.61 36.88 2.74
349 402 2.887783 AGAACTCATCTGACGTCACACT 59.112 45.455 15.76 0.00 36.88 3.55
350 403 3.290308 AGAACTCATCTGACGTCACAC 57.710 47.619 15.76 0.34 36.88 3.82
353 406 4.336713 CCATCTAGAACTCATCTGACGTCA 59.663 45.833 18.88 18.88 39.30 4.35
354 407 4.336993 ACCATCTAGAACTCATCTGACGTC 59.663 45.833 9.11 9.11 39.30 4.34
355 408 4.274147 ACCATCTAGAACTCATCTGACGT 58.726 43.478 0.00 0.00 39.30 4.34
356 409 4.261405 GGACCATCTAGAACTCATCTGACG 60.261 50.000 0.00 0.00 39.30 4.35
357 410 4.038642 GGGACCATCTAGAACTCATCTGAC 59.961 50.000 0.00 0.00 39.30 3.51
358 411 4.078922 AGGGACCATCTAGAACTCATCTGA 60.079 45.833 0.00 0.00 39.30 3.27
359 412 4.222336 AGGGACCATCTAGAACTCATCTG 58.778 47.826 0.00 0.00 39.30 2.90
360 413 4.551215 AGGGACCATCTAGAACTCATCT 57.449 45.455 0.00 0.00 42.48 2.90
432 485 4.936411 TGGCAATGAATTTAATGGCAAGTG 59.064 37.500 11.47 0.00 44.09 3.16
596 854 0.534203 ACTTGTCCAACCGTCGCAAT 60.534 50.000 0.00 0.00 0.00 3.56
605 863 1.404035 GGTGGTTGTCACTTGTCCAAC 59.596 52.381 0.00 0.00 45.38 3.77
686 944 2.727392 CGGGGGTAGCCATCGAACA 61.727 63.158 14.06 0.00 0.00 3.18
704 962 2.159382 TCCGGCCAATTCAAGAGAAAC 58.841 47.619 2.24 0.00 37.29 2.78
706 964 2.806945 ATCCGGCCAATTCAAGAGAA 57.193 45.000 2.24 0.00 38.31 2.87
707 965 2.503765 TGTATCCGGCCAATTCAAGAGA 59.496 45.455 2.24 0.00 0.00 3.10
708 966 2.917933 TGTATCCGGCCAATTCAAGAG 58.082 47.619 2.24 0.00 0.00 2.85
741 999 1.413077 TGGGTAACACGTGTCATGTCA 59.587 47.619 23.61 13.74 39.74 3.58
767 1025 3.687102 ACGCGACCAATCCACGGA 61.687 61.111 15.93 0.00 0.00 4.69
840 1374 2.661566 CGCAGGCACACACTTCTCG 61.662 63.158 0.00 0.00 0.00 4.04
858 1395 6.261381 TGTTGAACCAAACATTAGTACAGGTC 59.739 38.462 0.00 0.00 35.16 3.85
859 1396 6.123651 TGTTGAACCAAACATTAGTACAGGT 58.876 36.000 0.00 0.00 35.16 4.00
893 1459 4.389374 TGTTTTGCAACCAACTCCAAAAA 58.611 34.783 13.62 0.00 38.45 1.94
894 1460 3.999663 CTGTTTTGCAACCAACTCCAAAA 59.000 39.130 13.62 0.00 35.52 2.44
895 1461 3.594134 CTGTTTTGCAACCAACTCCAAA 58.406 40.909 13.62 0.00 31.02 3.28
896 1462 2.093764 CCTGTTTTGCAACCAACTCCAA 60.094 45.455 13.62 0.00 31.02 3.53
981 1564 2.052104 GGGGTGCGGGATGGAAAAG 61.052 63.158 0.00 0.00 0.00 2.27
1130 1732 4.179579 GCCGGTTCTTGGATGCGC 62.180 66.667 1.90 0.00 0.00 6.09
1158 1793 2.756042 CCCCATCGCCATTGGAGGA 61.756 63.158 6.95 2.96 36.26 3.71
1164 1799 2.203538 GCCATCCCCATCGCCATT 60.204 61.111 0.00 0.00 0.00 3.16
1165 1800 4.648626 CGCCATCCCCATCGCCAT 62.649 66.667 0.00 0.00 0.00 4.40
1301 2158 3.920093 GACAGGTGGCGGAAAGGGG 62.920 68.421 0.00 0.00 0.00 4.79
1624 3319 0.699981 TACCTTTTCCTTTCCCGGGG 59.300 55.000 23.50 6.77 0.00 5.73
1672 3377 1.955778 CCACACTCCAAATCACAAGCA 59.044 47.619 0.00 0.00 0.00 3.91
1739 3455 4.898265 TCATCCCCAAGATTTCAACAAACA 59.102 37.500 0.00 0.00 30.59 2.83
1948 4636 9.853555 CATTTTCCACTTACAGCAAAATATGTA 57.146 29.630 0.00 0.00 0.00 2.29
1962 4666 2.719705 ACCTCCCCACATTTTCCACTTA 59.280 45.455 0.00 0.00 0.00 2.24
2117 4890 5.011125 AGGATCCAGATAATGTACGTCAAGG 59.989 44.000 15.82 0.00 0.00 3.61
2154 4927 0.550914 TGCAGTTGACTTCCCTTGGT 59.449 50.000 0.00 0.00 0.00 3.67
2155 4928 1.915141 ATGCAGTTGACTTCCCTTGG 58.085 50.000 0.00 0.00 0.00 3.61
2159 4932 4.579869 TCTTTCTATGCAGTTGACTTCCC 58.420 43.478 0.00 0.00 0.00 3.97
2160 4933 6.112058 AGATCTTTCTATGCAGTTGACTTCC 58.888 40.000 0.00 0.00 0.00 3.46
2162 4935 6.373774 CCAAGATCTTTCTATGCAGTTGACTT 59.626 38.462 4.86 0.00 0.00 3.01
2163 4936 5.879223 CCAAGATCTTTCTATGCAGTTGACT 59.121 40.000 4.86 0.00 0.00 3.41
2164 4937 5.645497 ACCAAGATCTTTCTATGCAGTTGAC 59.355 40.000 4.86 0.00 0.00 3.18
2167 4940 8.515414 GTTAAACCAAGATCTTTCTATGCAGTT 58.485 33.333 4.86 0.00 0.00 3.16
2169 4942 7.475840 GGTTAAACCAAGATCTTTCTATGCAG 58.524 38.462 4.86 0.00 38.42 4.41
2186 6035 4.037565 CAGTTGACTTCCCTTGGTTAAACC 59.962 45.833 0.00 0.00 39.22 3.27
2187 6036 4.499188 GCAGTTGACTTCCCTTGGTTAAAC 60.499 45.833 0.00 0.00 0.00 2.01
2188 6037 3.634910 GCAGTTGACTTCCCTTGGTTAAA 59.365 43.478 0.00 0.00 0.00 1.52
2199 6157 7.413877 CCAAGATCTTTCTATGCAGTTGACTTC 60.414 40.741 4.86 0.00 0.00 3.01
2218 6176 4.439700 CCACATGATGCTCAAACCAAGATC 60.440 45.833 0.00 0.00 0.00 2.75
2303 6262 5.564651 GCCAGATTTCGAAAAGATCCACAAA 60.565 40.000 15.66 0.00 0.00 2.83
2316 6275 6.940831 TCAAAATATGATGCCAGATTTCGA 57.059 33.333 0.00 0.00 41.69 3.71
2389 6986 4.895889 CAGTAATCAGGACATGACCTCCTA 59.104 45.833 14.16 3.53 41.91 2.94
2497 7155 7.611467 AGTGGTCAGAGATTTTGCATGTAAATA 59.389 33.333 9.89 2.26 0.00 1.40
2531 7189 2.260844 TGGTGAAGCTTCTCAACCAG 57.739 50.000 25.55 0.00 31.56 4.00
2699 7455 6.899393 ATACAGAATCAACAAGAAGCCAAA 57.101 33.333 0.00 0.00 0.00 3.28
2754 7579 7.999679 TGACAAGAAATGAACAGAATGAAGTT 58.000 30.769 0.00 0.00 39.69 2.66
2755 7580 7.572523 TGACAAGAAATGAACAGAATGAAGT 57.427 32.000 0.00 0.00 39.69 3.01
2756 7581 8.861033 TTTGACAAGAAATGAACAGAATGAAG 57.139 30.769 0.00 0.00 39.69 3.02
2780 7605 9.348476 GCCTTCCTTCTCTATGAAAAATCTATT 57.652 33.333 0.00 0.00 33.79 1.73
2781 7606 8.497745 TGCCTTCCTTCTCTATGAAAAATCTAT 58.502 33.333 0.00 0.00 33.79 1.98
2782 7607 7.861629 TGCCTTCCTTCTCTATGAAAAATCTA 58.138 34.615 0.00 0.00 33.79 1.98
2783 7608 6.725364 TGCCTTCCTTCTCTATGAAAAATCT 58.275 36.000 0.00 0.00 33.79 2.40
2784 7609 7.396540 TTGCCTTCCTTCTCTATGAAAAATC 57.603 36.000 0.00 0.00 33.79 2.17
2785 7610 7.781324 TTTGCCTTCCTTCTCTATGAAAAAT 57.219 32.000 0.00 0.00 33.79 1.82
2786 7611 7.781324 ATTTGCCTTCCTTCTCTATGAAAAA 57.219 32.000 0.00 0.00 33.79 1.94
2787 7612 8.906867 CATATTTGCCTTCCTTCTCTATGAAAA 58.093 33.333 0.00 0.00 33.79 2.29
2788 7613 8.055181 ACATATTTGCCTTCCTTCTCTATGAAA 58.945 33.333 0.00 0.00 33.79 2.69
2789 7614 7.577303 ACATATTTGCCTTCCTTCTCTATGAA 58.423 34.615 0.00 0.00 0.00 2.57
2790 7615 7.141758 ACATATTTGCCTTCCTTCTCTATGA 57.858 36.000 0.00 0.00 0.00 2.15
2791 7616 7.500227 TGAACATATTTGCCTTCCTTCTCTATG 59.500 37.037 0.00 0.00 0.00 2.23
2792 7617 7.577303 TGAACATATTTGCCTTCCTTCTCTAT 58.423 34.615 0.00 0.00 0.00 1.98
2793 7618 6.957631 TGAACATATTTGCCTTCCTTCTCTA 58.042 36.000 0.00 0.00 0.00 2.43
2794 7619 5.819991 TGAACATATTTGCCTTCCTTCTCT 58.180 37.500 0.00 0.00 0.00 3.10
2795 7620 5.882557 TCTGAACATATTTGCCTTCCTTCTC 59.117 40.000 0.00 0.00 0.00 2.87
2796 7621 5.819991 TCTGAACATATTTGCCTTCCTTCT 58.180 37.500 0.00 0.00 0.00 2.85
2797 7622 6.325596 GTTCTGAACATATTTGCCTTCCTTC 58.674 40.000 15.34 0.00 0.00 3.46
2798 7623 5.106157 CGTTCTGAACATATTTGCCTTCCTT 60.106 40.000 19.56 0.00 0.00 3.36
2799 7624 4.396166 CGTTCTGAACATATTTGCCTTCCT 59.604 41.667 19.56 0.00 0.00 3.36
2800 7625 4.156008 ACGTTCTGAACATATTTGCCTTCC 59.844 41.667 19.56 0.00 0.00 3.46
2801 7626 5.088739 CACGTTCTGAACATATTTGCCTTC 58.911 41.667 19.56 0.00 0.00 3.46
2802 7627 4.759693 TCACGTTCTGAACATATTTGCCTT 59.240 37.500 19.56 0.00 0.00 4.35
2803 7628 4.323417 TCACGTTCTGAACATATTTGCCT 58.677 39.130 19.56 0.00 0.00 4.75
2804 7629 4.437390 CCTCACGTTCTGAACATATTTGCC 60.437 45.833 19.56 0.00 0.00 4.52
2805 7630 4.391830 TCCTCACGTTCTGAACATATTTGC 59.608 41.667 19.56 0.00 0.00 3.68
2806 7631 5.446473 GCTCCTCACGTTCTGAACATATTTG 60.446 44.000 19.56 8.52 0.00 2.32
2807 7632 4.631813 GCTCCTCACGTTCTGAACATATTT 59.368 41.667 19.56 0.00 0.00 1.40
2808 7633 4.184629 GCTCCTCACGTTCTGAACATATT 58.815 43.478 19.56 0.00 0.00 1.28
2809 7634 3.195610 TGCTCCTCACGTTCTGAACATAT 59.804 43.478 19.56 2.59 0.00 1.78
2810 7635 2.560981 TGCTCCTCACGTTCTGAACATA 59.439 45.455 19.56 4.20 0.00 2.29
2811 7636 1.344438 TGCTCCTCACGTTCTGAACAT 59.656 47.619 19.56 1.91 0.00 2.71
2812 7637 0.750249 TGCTCCTCACGTTCTGAACA 59.250 50.000 19.56 0.47 0.00 3.18
2813 7638 1.140816 GTGCTCCTCACGTTCTGAAC 58.859 55.000 10.48 10.48 35.76 3.18
2814 7639 0.033504 GGTGCTCCTCACGTTCTGAA 59.966 55.000 0.00 0.00 46.56 3.02
2815 7640 1.112916 TGGTGCTCCTCACGTTCTGA 61.113 55.000 6.34 0.00 46.56 3.27
2816 7641 0.668706 CTGGTGCTCCTCACGTTCTG 60.669 60.000 6.34 0.00 46.56 3.02
2817 7642 1.668294 CTGGTGCTCCTCACGTTCT 59.332 57.895 6.34 0.00 46.56 3.01
2818 7643 1.374758 CCTGGTGCTCCTCACGTTC 60.375 63.158 6.34 0.00 46.56 3.95
2819 7644 1.696097 AACCTGGTGCTCCTCACGTT 61.696 55.000 0.00 0.68 46.56 3.99
2820 7645 1.696097 AAACCTGGTGCTCCTCACGT 61.696 55.000 0.00 0.00 46.56 4.49
2821 7646 1.071471 AAACCTGGTGCTCCTCACG 59.929 57.895 0.00 0.00 46.56 4.35
2822 7647 0.179018 ACAAACCTGGTGCTCCTCAC 60.179 55.000 0.00 0.00 44.90 3.51
2823 7648 0.108585 GACAAACCTGGTGCTCCTCA 59.891 55.000 0.00 0.00 34.23 3.86
2824 7649 0.398318 AGACAAACCTGGTGCTCCTC 59.602 55.000 0.00 0.00 34.23 3.71
2825 7650 0.398318 GAGACAAACCTGGTGCTCCT 59.602 55.000 0.00 0.00 34.23 3.69
2826 7651 0.606673 GGAGACAAACCTGGTGCTCC 60.607 60.000 17.11 17.11 34.45 4.70
2827 7652 0.108585 TGGAGACAAACCTGGTGCTC 59.891 55.000 0.00 5.48 37.44 4.26
2828 7653 2.230664 TGGAGACAAACCTGGTGCT 58.769 52.632 0.00 0.00 37.44 4.40
2829 7654 4.898607 TGGAGACAAACCTGGTGC 57.101 55.556 0.00 0.00 37.44 5.01
2840 7665 5.402398 GTTCACATTAGGCAAAATGGAGAC 58.598 41.667 14.59 7.63 40.48 3.36
2841 7666 4.155826 CGTTCACATTAGGCAAAATGGAGA 59.844 41.667 14.59 10.11 40.48 3.71
2842 7667 4.082787 ACGTTCACATTAGGCAAAATGGAG 60.083 41.667 14.59 8.44 40.48 3.86
2843 7668 3.823873 ACGTTCACATTAGGCAAAATGGA 59.176 39.130 14.59 7.98 40.48 3.41
2844 7669 4.173036 ACGTTCACATTAGGCAAAATGG 57.827 40.909 14.59 6.28 40.48 3.16
2845 7670 5.218885 TGAACGTTCACATTAGGCAAAATG 58.781 37.500 26.53 10.09 41.65 2.32
2846 7671 5.446143 TGAACGTTCACATTAGGCAAAAT 57.554 34.783 26.53 0.00 31.01 1.82
2847 7672 4.902443 TGAACGTTCACATTAGGCAAAA 57.098 36.364 26.53 0.00 31.01 2.44
2848 7673 4.902443 TTGAACGTTCACATTAGGCAAA 57.098 36.364 29.74 9.12 36.83 3.68
2849 7674 4.902443 TTTGAACGTTCACATTAGGCAA 57.098 36.364 29.74 15.97 36.83 4.52
2850 7675 5.446143 AATTTGAACGTTCACATTAGGCA 57.554 34.783 31.18 14.34 36.22 4.75
2851 7676 5.918011 TCAAATTTGAACGTTCACATTAGGC 59.082 36.000 31.92 6.94 36.78 3.93
2852 7677 7.594758 ACATCAAATTTGAACGTTCACATTAGG 59.405 33.333 31.92 26.91 41.13 2.69
2853 7678 8.419435 CACATCAAATTTGAACGTTCACATTAG 58.581 33.333 31.92 24.75 41.13 1.73
2854 7679 7.096271 GCACATCAAATTTGAACGTTCACATTA 60.096 33.333 31.92 22.32 41.13 1.90
2855 7680 6.292274 GCACATCAAATTTGAACGTTCACATT 60.292 34.615 28.39 28.39 41.13 2.71
2856 7681 5.175491 GCACATCAAATTTGAACGTTCACAT 59.825 36.000 29.74 25.19 41.13 3.21
2857 7682 4.502282 GCACATCAAATTTGAACGTTCACA 59.498 37.500 29.74 24.06 41.13 3.58
2858 7683 4.502282 TGCACATCAAATTTGAACGTTCAC 59.498 37.500 29.74 14.21 41.13 3.18
2859 7684 4.676546 TGCACATCAAATTTGAACGTTCA 58.323 34.783 26.53 26.53 41.13 3.18
2860 7685 5.401972 TCATGCACATCAAATTTGAACGTTC 59.598 36.000 23.91 21.42 41.13 3.95
2861 7686 5.288015 TCATGCACATCAAATTTGAACGTT 58.712 33.333 23.91 0.00 41.13 3.99
2862 7687 4.869215 TCATGCACATCAAATTTGAACGT 58.131 34.783 23.91 19.83 41.13 3.99
2863 7688 5.825905 TTCATGCACATCAAATTTGAACG 57.174 34.783 23.91 19.24 41.13 3.95
2864 7689 9.910511 GATATTTCATGCACATCAAATTTGAAC 57.089 29.630 23.91 14.11 41.13 3.18
2865 7690 9.654663 TGATATTTCATGCACATCAAATTTGAA 57.345 25.926 23.91 8.39 41.13 2.69
2866 7691 9.308318 CTGATATTTCATGCACATCAAATTTGA 57.692 29.630 22.52 22.52 42.14 2.69
2867 7692 8.547894 CCTGATATTTCATGCACATCAAATTTG 58.452 33.333 12.15 12.15 0.00 2.32
2868 7693 8.479689 TCCTGATATTTCATGCACATCAAATTT 58.520 29.630 0.00 0.00 0.00 1.82
2869 7694 8.014070 TCCTGATATTTCATGCACATCAAATT 57.986 30.769 0.00 0.00 0.00 1.82
2870 7695 7.591421 TCCTGATATTTCATGCACATCAAAT 57.409 32.000 0.00 0.00 0.00 2.32
2871 7696 7.285858 TCATCCTGATATTTCATGCACATCAAA 59.714 33.333 0.00 0.00 0.00 2.69
2872 7697 6.773685 TCATCCTGATATTTCATGCACATCAA 59.226 34.615 0.00 0.00 0.00 2.57
2873 7698 6.300703 TCATCCTGATATTTCATGCACATCA 58.699 36.000 0.00 0.00 0.00 3.07
2874 7699 6.812879 TCATCCTGATATTTCATGCACATC 57.187 37.500 0.00 0.00 0.00 3.06
2875 7700 7.287005 ACTTTCATCCTGATATTTCATGCACAT 59.713 33.333 0.00 0.00 0.00 3.21
2876 7701 6.604396 ACTTTCATCCTGATATTTCATGCACA 59.396 34.615 0.00 0.00 0.00 4.57
2877 7702 7.035840 ACTTTCATCCTGATATTTCATGCAC 57.964 36.000 0.00 0.00 0.00 4.57
2878 7703 6.263842 GGACTTTCATCCTGATATTTCATGCA 59.736 38.462 0.00 0.00 35.68 3.96
2879 7704 6.567321 CGGACTTTCATCCTGATATTTCATGC 60.567 42.308 0.00 0.00 36.52 4.06
2880 7705 6.707608 TCGGACTTTCATCCTGATATTTCATG 59.292 38.462 0.00 0.00 36.52 3.07
2881 7706 6.830912 TCGGACTTTCATCCTGATATTTCAT 58.169 36.000 0.00 0.00 36.52 2.57
2882 7707 6.098266 TCTCGGACTTTCATCCTGATATTTCA 59.902 38.462 0.00 0.00 36.52 2.69
2883 7708 6.516718 TCTCGGACTTTCATCCTGATATTTC 58.483 40.000 0.00 0.00 36.52 2.17
2884 7709 6.485830 TCTCGGACTTTCATCCTGATATTT 57.514 37.500 0.00 0.00 36.52 1.40
2885 7710 6.268617 TGATCTCGGACTTTCATCCTGATATT 59.731 38.462 0.00 0.00 36.52 1.28
2886 7711 5.777223 TGATCTCGGACTTTCATCCTGATAT 59.223 40.000 0.00 0.00 36.52 1.63
2887 7712 5.010112 GTGATCTCGGACTTTCATCCTGATA 59.990 44.000 0.00 0.00 36.52 2.15
2888 7713 3.963374 TGATCTCGGACTTTCATCCTGAT 59.037 43.478 0.00 0.00 36.52 2.90
2889 7714 3.131223 GTGATCTCGGACTTTCATCCTGA 59.869 47.826 0.00 0.00 36.52 3.86
2890 7715 3.118992 TGTGATCTCGGACTTTCATCCTG 60.119 47.826 0.00 0.00 36.52 3.86
2891 7716 3.099905 TGTGATCTCGGACTTTCATCCT 58.900 45.455 0.00 0.00 36.52 3.24
2892 7717 3.526931 TGTGATCTCGGACTTTCATCC 57.473 47.619 0.00 0.00 35.16 3.51
2893 7718 4.748892 TCTTGTGATCTCGGACTTTCATC 58.251 43.478 0.00 0.00 0.00 2.92
2894 7719 4.808414 TCTTGTGATCTCGGACTTTCAT 57.192 40.909 0.00 0.00 0.00 2.57
2895 7720 4.808414 ATCTTGTGATCTCGGACTTTCA 57.192 40.909 0.00 0.00 0.00 2.69
2896 7721 5.897050 AGTATCTTGTGATCTCGGACTTTC 58.103 41.667 0.00 0.00 34.32 2.62
2897 7722 5.923733 AGTATCTTGTGATCTCGGACTTT 57.076 39.130 0.00 0.00 34.32 2.66
2898 7723 5.923733 AAGTATCTTGTGATCTCGGACTT 57.076 39.130 0.00 0.00 34.32 3.01
2899 7724 5.394663 CCAAAGTATCTTGTGATCTCGGACT 60.395 44.000 0.00 0.00 34.32 3.85
2900 7725 4.806247 CCAAAGTATCTTGTGATCTCGGAC 59.194 45.833 0.00 0.00 34.32 4.79
2901 7726 4.466370 ACCAAAGTATCTTGTGATCTCGGA 59.534 41.667 0.00 0.00 34.32 4.55
2902 7727 4.759782 ACCAAAGTATCTTGTGATCTCGG 58.240 43.478 0.00 0.00 34.32 4.63
2903 7728 5.869344 TGAACCAAAGTATCTTGTGATCTCG 59.131 40.000 0.00 0.00 34.32 4.04
2904 7729 7.201679 CCATGAACCAAAGTATCTTGTGATCTC 60.202 40.741 0.00 0.00 34.32 2.75
2905 7730 6.600822 CCATGAACCAAAGTATCTTGTGATCT 59.399 38.462 0.00 0.00 34.32 2.75
2906 7731 6.375455 ACCATGAACCAAAGTATCTTGTGATC 59.625 38.462 0.00 0.00 34.32 2.92
2907 7732 6.248433 ACCATGAACCAAAGTATCTTGTGAT 58.752 36.000 0.00 0.00 36.74 3.06
2908 7733 5.630121 ACCATGAACCAAAGTATCTTGTGA 58.370 37.500 0.00 0.00 0.00 3.58
2909 7734 5.964958 ACCATGAACCAAAGTATCTTGTG 57.035 39.130 0.00 0.00 0.00 3.33
2910 7735 5.476945 GGAACCATGAACCAAAGTATCTTGT 59.523 40.000 0.00 0.00 0.00 3.16
2911 7736 5.711976 AGGAACCATGAACCAAAGTATCTTG 59.288 40.000 0.00 0.00 0.00 3.02
2912 7737 5.711976 CAGGAACCATGAACCAAAGTATCTT 59.288 40.000 0.00 0.00 0.00 2.40
2913 7738 5.222130 ACAGGAACCATGAACCAAAGTATCT 60.222 40.000 0.00 0.00 0.00 1.98
2914 7739 5.010282 ACAGGAACCATGAACCAAAGTATC 58.990 41.667 0.00 0.00 0.00 2.24
2915 7740 4.998051 ACAGGAACCATGAACCAAAGTAT 58.002 39.130 0.00 0.00 0.00 2.12
2916 7741 4.447138 ACAGGAACCATGAACCAAAGTA 57.553 40.909 0.00 0.00 0.00 2.24
2917 7742 3.312736 ACAGGAACCATGAACCAAAGT 57.687 42.857 0.00 0.00 0.00 2.66
2918 7743 3.188460 CGTACAGGAACCATGAACCAAAG 59.812 47.826 0.00 0.00 0.00 2.77
2919 7744 3.142951 CGTACAGGAACCATGAACCAAA 58.857 45.455 0.00 0.00 0.00 3.28
2920 7745 2.369203 TCGTACAGGAACCATGAACCAA 59.631 45.455 0.00 0.00 0.00 3.67
2921 7746 1.972075 TCGTACAGGAACCATGAACCA 59.028 47.619 0.00 0.00 0.00 3.67
2922 7747 2.754946 TCGTACAGGAACCATGAACC 57.245 50.000 0.00 0.00 0.00 3.62
2923 7748 3.857052 TCATCGTACAGGAACCATGAAC 58.143 45.455 0.00 0.00 0.00 3.18
2924 7749 4.020573 AGTTCATCGTACAGGAACCATGAA 60.021 41.667 14.76 6.83 41.32 2.57
2925 7750 3.513912 AGTTCATCGTACAGGAACCATGA 59.486 43.478 14.76 2.46 41.32 3.07
2926 7751 3.618594 CAGTTCATCGTACAGGAACCATG 59.381 47.826 14.76 7.78 41.32 3.66
2927 7752 3.260884 ACAGTTCATCGTACAGGAACCAT 59.739 43.478 14.76 5.51 41.32 3.55
2928 7753 2.631062 ACAGTTCATCGTACAGGAACCA 59.369 45.455 14.76 0.00 41.32 3.67
2929 7754 3.314541 ACAGTTCATCGTACAGGAACC 57.685 47.619 14.76 0.00 41.32 3.62
2930 7755 4.304110 TGAACAGTTCATCGTACAGGAAC 58.696 43.478 12.24 12.08 40.84 3.62
2931 7756 4.279922 TCTGAACAGTTCATCGTACAGGAA 59.720 41.667 16.53 0.00 39.30 3.36
2932 7757 3.824443 TCTGAACAGTTCATCGTACAGGA 59.176 43.478 16.53 5.11 39.30 3.86
2933 7758 4.174411 TCTGAACAGTTCATCGTACAGG 57.826 45.455 16.53 2.77 39.30 4.00
2934 7759 5.920840 TCTTTCTGAACAGTTCATCGTACAG 59.079 40.000 16.53 3.48 39.30 2.74
2935 7760 5.838529 TCTTTCTGAACAGTTCATCGTACA 58.161 37.500 16.53 0.00 39.30 2.90
2936 7761 6.952935 ATCTTTCTGAACAGTTCATCGTAC 57.047 37.500 16.53 0.00 39.30 3.67
2937 7762 9.653287 AATAATCTTTCTGAACAGTTCATCGTA 57.347 29.630 16.53 2.69 39.30 3.43
2938 7763 8.553459 AATAATCTTTCTGAACAGTTCATCGT 57.447 30.769 16.53 1.62 39.30 3.73
2939 7764 9.831737 AAAATAATCTTTCTGAACAGTTCATCG 57.168 29.630 16.53 6.34 39.30 3.84
2987 7812 9.562408 TCAAACTATCACAACCAATAGTTAACA 57.438 29.630 8.61 0.00 44.13 2.41
2990 7815 9.173021 CCATCAAACTATCACAACCAATAGTTA 57.827 33.333 7.88 0.00 44.13 2.24
2991 7816 7.888021 TCCATCAAACTATCACAACCAATAGTT 59.112 33.333 2.70 2.70 45.87 2.24
2992 7817 7.402054 TCCATCAAACTATCACAACCAATAGT 58.598 34.615 0.00 0.00 39.74 2.12
2993 7818 7.864108 TCCATCAAACTATCACAACCAATAG 57.136 36.000 0.00 0.00 0.00 1.73
2994 7819 7.148086 GCTTCCATCAAACTATCACAACCAATA 60.148 37.037 0.00 0.00 0.00 1.90
2995 7820 6.350445 GCTTCCATCAAACTATCACAACCAAT 60.350 38.462 0.00 0.00 0.00 3.16
2996 7821 5.048083 GCTTCCATCAAACTATCACAACCAA 60.048 40.000 0.00 0.00 0.00 3.67
2997 7822 4.458989 GCTTCCATCAAACTATCACAACCA 59.541 41.667 0.00 0.00 0.00 3.67
2998 7823 4.702131 AGCTTCCATCAAACTATCACAACC 59.298 41.667 0.00 0.00 0.00 3.77
2999 7824 5.412594 TCAGCTTCCATCAAACTATCACAAC 59.587 40.000 0.00 0.00 0.00 3.32
3000 7825 5.559770 TCAGCTTCCATCAAACTATCACAA 58.440 37.500 0.00 0.00 0.00 3.33
3001 7826 5.164620 TCAGCTTCCATCAAACTATCACA 57.835 39.130 0.00 0.00 0.00 3.58
3002 7827 6.510799 CGATTCAGCTTCCATCAAACTATCAC 60.511 42.308 0.00 0.00 0.00 3.06
3003 7828 5.525012 CGATTCAGCTTCCATCAAACTATCA 59.475 40.000 0.00 0.00 0.00 2.15
3004 7829 5.525378 ACGATTCAGCTTCCATCAAACTATC 59.475 40.000 0.00 0.00 0.00 2.08
3005 7830 5.431765 ACGATTCAGCTTCCATCAAACTAT 58.568 37.500 0.00 0.00 0.00 2.12
3006 7831 4.832248 ACGATTCAGCTTCCATCAAACTA 58.168 39.130 0.00 0.00 0.00 2.24
3007 7832 3.679389 ACGATTCAGCTTCCATCAAACT 58.321 40.909 0.00 0.00 0.00 2.66
3008 7833 4.631813 AGTACGATTCAGCTTCCATCAAAC 59.368 41.667 0.00 0.00 0.00 2.93
3009 7834 4.832248 AGTACGATTCAGCTTCCATCAAA 58.168 39.130 0.00 0.00 0.00 2.69
3010 7835 4.471904 AGTACGATTCAGCTTCCATCAA 57.528 40.909 0.00 0.00 0.00 2.57
3011 7836 4.183865 CAAGTACGATTCAGCTTCCATCA 58.816 43.478 0.00 0.00 0.00 3.07
3012 7837 4.184629 ACAAGTACGATTCAGCTTCCATC 58.815 43.478 0.00 0.00 0.00 3.51
3013 7838 4.207891 ACAAGTACGATTCAGCTTCCAT 57.792 40.909 0.00 0.00 0.00 3.41
3014 7839 3.678056 ACAAGTACGATTCAGCTTCCA 57.322 42.857 0.00 0.00 0.00 3.53
3015 7840 4.563184 CAGTACAAGTACGATTCAGCTTCC 59.437 45.833 4.85 0.00 40.80 3.46
3016 7841 5.162075 ACAGTACAAGTACGATTCAGCTTC 58.838 41.667 4.85 0.00 40.80 3.86
3017 7842 5.135508 ACAGTACAAGTACGATTCAGCTT 57.864 39.130 4.85 0.00 40.80 3.74
3018 7843 4.785511 ACAGTACAAGTACGATTCAGCT 57.214 40.909 4.85 0.00 40.80 4.24
3019 7844 4.684703 ACAACAGTACAAGTACGATTCAGC 59.315 41.667 4.85 0.00 40.80 4.26
3020 7845 6.419710 TCAACAACAGTACAAGTACGATTCAG 59.580 38.462 4.85 0.00 40.80 3.02
3021 7846 6.274579 TCAACAACAGTACAAGTACGATTCA 58.725 36.000 4.85 0.00 40.80 2.57
3022 7847 6.420008 ACTCAACAACAGTACAAGTACGATTC 59.580 38.462 4.85 0.00 40.80 2.52
3023 7848 6.278363 ACTCAACAACAGTACAAGTACGATT 58.722 36.000 4.85 1.48 40.80 3.34
3024 7849 5.839621 ACTCAACAACAGTACAAGTACGAT 58.160 37.500 4.85 0.00 40.80 3.73
3025 7850 5.252969 ACTCAACAACAGTACAAGTACGA 57.747 39.130 4.85 0.00 40.80 3.43
3026 7851 5.961395 AACTCAACAACAGTACAAGTACG 57.039 39.130 4.85 3.42 40.80 3.67
3027 7852 9.037737 TGATAAACTCAACAACAGTACAAGTAC 57.962 33.333 2.18 2.18 36.35 2.73
3028 7853 9.772973 ATGATAAACTCAACAACAGTACAAGTA 57.227 29.630 0.00 0.00 37.44 2.24
3029 7854 8.677148 ATGATAAACTCAACAACAGTACAAGT 57.323 30.769 0.00 0.00 37.44 3.16
3031 7856 9.549078 TGTATGATAAACTCAACAACAGTACAA 57.451 29.630 0.00 0.00 37.44 2.41
3032 7857 9.719355 ATGTATGATAAACTCAACAACAGTACA 57.281 29.630 0.00 0.00 37.44 2.90
3110 7935 7.255381 GCTCCACATGTCTTGAATATATTTGCT 60.255 37.037 0.00 0.00 0.00 3.91
3119 7944 2.224843 TGGTGCTCCACATGTCTTGAAT 60.225 45.455 2.64 0.00 39.03 2.57
3120 8251 1.142667 TGGTGCTCCACATGTCTTGAA 59.857 47.619 2.64 0.00 39.03 2.69
3121 8252 0.764271 TGGTGCTCCACATGTCTTGA 59.236 50.000 2.64 0.00 39.03 3.02
3122 8253 1.162698 CTGGTGCTCCACATGTCTTG 58.837 55.000 2.64 0.00 39.03 3.02
3123 8254 0.037303 CCTGGTGCTCCACATGTCTT 59.963 55.000 2.64 0.00 39.03 3.01
3124 8255 1.130054 ACCTGGTGCTCCACATGTCT 61.130 55.000 2.64 0.00 39.03 3.41
3125 8256 0.250901 AACCTGGTGCTCCACATGTC 60.251 55.000 2.64 0.00 39.03 3.06
3133 8264 0.108585 TGGAGACAAACCTGGTGCTC 59.891 55.000 0.00 5.48 37.44 4.26
3200 8333 5.596361 AGTATCTTGTGATCTCGGACATTCT 59.404 40.000 0.00 0.00 34.32 2.40
3429 8875 5.583495 TCGGTTTTTAAAACCACTGTCATG 58.417 37.500 31.03 16.75 40.28 3.07
3459 8924 8.661352 AGGTGATGGAAAGTTTGTTTTTATTG 57.339 30.769 0.00 0.00 0.00 1.90
3581 9057 5.401674 CGCCTCGTTAGAAGAAACCATATAC 59.598 44.000 0.00 0.00 0.00 1.47
3606 9082 3.070018 CCGAATAGGCATCAAGATGGTC 58.930 50.000 11.66 0.00 39.16 4.02
3854 9335 4.982241 AACTCAGAGTTCCATCCAAGAA 57.018 40.909 10.27 0.00 31.77 2.52
4154 9745 2.292103 TTGCTGTTGTTCCTTTGCAC 57.708 45.000 0.00 0.00 0.00 4.57
4623 10258 1.865865 TTTCTCACTGTCTTGCGTCC 58.134 50.000 0.00 0.00 0.00 4.79
4775 10413 3.308035 TGGTCGACCTCTGGTATATGT 57.692 47.619 33.39 0.00 35.25 2.29
5436 11232 8.804204 ACAAGTAAGTATATCCTATGCCTACAC 58.196 37.037 0.00 0.00 0.00 2.90
5437 11233 8.803235 CACAAGTAAGTATATCCTATGCCTACA 58.197 37.037 0.00 0.00 0.00 2.74
5559 11770 1.431488 CGATCAATCCAGTGGCACCG 61.431 60.000 15.27 3.38 0.00 4.94
5578 11814 6.882610 TTCATCCTTGTATATGTGCCAATC 57.117 37.500 0.00 0.00 0.00 2.67
5796 12660 2.621526 GTTTCCACAACTTGGGACGATT 59.378 45.455 0.00 0.00 46.92 3.34
5868 12733 3.320673 TTCCTTCTTCTTCTCCTTCGC 57.679 47.619 0.00 0.00 0.00 4.70
6066 12996 2.703007 CCAAGGGGGATCAGAACTAGAG 59.297 54.545 0.00 0.00 40.01 2.43
6083 13013 6.484977 GCTCTATCCCAATAGTTTCTTCCAAG 59.515 42.308 0.00 0.00 36.90 3.61
6097 13027 6.430000 GTGTAGAAAAAGTTGCTCTATCCCAA 59.570 38.462 0.00 0.00 0.00 4.12
6291 13229 2.027837 GGCCAAGATTTCAATGCAACCT 60.028 45.455 0.00 0.00 0.00 3.50
6339 13277 4.539235 GGTTTTCCCATGGCTGGT 57.461 55.556 6.09 0.00 41.37 4.00
6350 13288 0.811281 CTGCCGATTCAGGGGTTTTC 59.189 55.000 0.00 0.00 0.00 2.29
6351 13289 0.112412 ACTGCCGATTCAGGGGTTTT 59.888 50.000 4.75 0.00 38.36 2.43
6359 13297 1.073125 TCCTTGGAAACTGCCGATTCA 59.927 47.619 0.88 0.00 0.00 2.57
6369 13307 3.042481 AGCTTGGCTCCTTGGAAAC 57.958 52.632 0.00 0.00 30.62 2.78
6396 13334 3.077907 CCGTGTTCCCCTCCATGT 58.922 61.111 0.00 0.00 0.00 3.21
6410 13348 3.121030 GCACGAGCTTGATGCCGT 61.121 61.111 8.31 0.00 44.78 5.68
6463 13406 2.952310 GAGGCATACTCCCACCAATTTC 59.048 50.000 0.00 0.00 40.49 2.17
6600 13905 6.805271 CCTCACACAACATTCATGAAGAAATC 59.195 38.462 14.54 0.00 40.22 2.17
6627 13932 1.645034 CTGCCAACTGATCTACCACG 58.355 55.000 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.