Multiple sequence alignment - TraesCS6A01G059900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G059900 chr6A 100.000 2906 0 0 1 2906 31588949 31586044 0.000000e+00 5367.0
1 TraesCS6A01G059900 chr6A 95.160 1653 56 8 392 2029 31634996 31636639 0.000000e+00 2588.0
2 TraesCS6A01G059900 chr6A 92.963 270 17 2 1966 2233 31636514 31636783 2.710000e-105 392.0
3 TraesCS6A01G059900 chr6A 93.056 144 10 0 245 388 31634396 31634539 8.160000e-51 211.0
4 TraesCS6A01G059900 chr6A 89.683 126 12 1 1904 2029 31586984 31586860 3.000000e-35 159.0
5 TraesCS6A01G059900 chr6A 87.500 64 8 0 1904 1967 31636576 31636639 1.120000e-09 75.0
6 TraesCS6A01G059900 chrUn 97.084 1063 24 5 1181 2239 104052953 104051894 0.000000e+00 1784.0
7 TraesCS6A01G059900 chrUn 95.779 1066 41 4 1181 2244 76957148 76958211 0.000000e+00 1716.0
8 TraesCS6A01G059900 chrUn 93.572 809 15 7 392 1186 104053801 104053016 0.000000e+00 1171.0
9 TraesCS6A01G059900 chrUn 98.321 655 9 2 2253 2906 104051906 104051253 0.000000e+00 1147.0
10 TraesCS6A01G059900 chrUn 90.838 764 33 7 437 1186 76956345 76957085 0.000000e+00 989.0
11 TraesCS6A01G059900 chrUn 100.000 398 0 0 842 1239 478984254 478983857 0.000000e+00 736.0
12 TraesCS6A01G059900 chrUn 83.954 779 76 22 1181 1922 31352749 31353515 0.000000e+00 701.0
13 TraesCS6A01G059900 chrUn 97.015 402 12 0 2496 2897 76958558 76958959 0.000000e+00 676.0
14 TraesCS6A01G059900 chrUn 96.708 243 5 2 2255 2497 76958195 76958434 4.510000e-108 401.0
15 TraesCS6A01G059900 chrUn 93.464 153 10 0 245 397 104054400 104054248 8.100000e-56 228.0
16 TraesCS6A01G059900 chrUn 91.503 153 13 0 245 397 76955691 76955843 8.160000e-51 211.0
17 TraesCS6A01G059900 chrUn 94.400 125 7 0 1904 2028 104052165 104052041 2.960000e-45 193.0
18 TraesCS6A01G059900 chrUn 92.800 125 9 0 1905 2029 76957935 76958059 6.400000e-42 182.0
19 TraesCS6A01G059900 chrUn 90.625 128 9 2 1966 2090 104052229 104052102 1.790000e-37 167.0
20 TraesCS6A01G059900 chrUn 89.683 126 12 1 1966 2090 76957872 76957997 3.000000e-35 159.0
21 TraesCS6A01G059900 chr2D 84.987 746 76 12 1185 1895 631307119 631307863 0.000000e+00 725.0
22 TraesCS6A01G059900 chr2D 86.280 656 80 8 1303 1950 647974928 647974275 0.000000e+00 704.0
23 TraesCS6A01G059900 chr2D 86.014 143 20 0 1181 1323 647975082 647974940 1.390000e-33 154.0
24 TraesCS6A01G059900 chr2D 82.313 147 21 2 394 535 587009082 587008936 3.930000e-24 122.0
25 TraesCS6A01G059900 chr2D 94.872 39 2 0 2485 2523 178850943 178850981 8.700000e-06 62.1
26 TraesCS6A01G059900 chr2B 86.792 583 62 5 1327 1895 744318393 744317812 1.140000e-178 636.0
27 TraesCS6A01G059900 chr2B 82.853 764 77 20 1181 1895 774839221 774839979 1.140000e-178 636.0
28 TraesCS6A01G059900 chr2B 80.580 448 56 14 1188 1615 627836625 627837061 1.680000e-82 316.0
29 TraesCS6A01G059900 chr2B 82.927 123 10 6 713 834 781810404 781810516 1.840000e-17 100.0
30 TraesCS6A01G059900 chr1D 86.444 568 62 5 1342 1895 432550556 432549990 2.480000e-170 608.0
31 TraesCS6A01G059900 chr1D 86.713 143 18 1 1181 1323 432550749 432550608 1.080000e-34 158.0
32 TraesCS6A01G059900 chr1D 100.000 32 0 0 2491 2522 366473837 366473868 3.130000e-05 60.2
33 TraesCS6A01G059900 chr2A 76.923 533 66 31 1363 1861 770923340 770923849 1.730000e-62 250.0
34 TraesCS6A01G059900 chr6D 94.891 137 6 1 2099 2235 31635110 31634975 2.270000e-51 213.0
35 TraesCS6A01G059900 chr7B 78.289 152 26 5 393 538 730807357 730807207 1.110000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G059900 chr6A 31586044 31588949 2905 True 2763.000000 5367 94.841500 1 2906 2 chr6A.!!$R1 2905
1 TraesCS6A01G059900 chr6A 31634396 31636783 2387 False 816.500000 2588 92.169750 245 2233 4 chr6A.!!$F1 1988
2 TraesCS6A01G059900 chrUn 104051253 104054400 3147 True 781.666667 1784 94.577667 245 2906 6 chrUn.!!$R2 2661
3 TraesCS6A01G059900 chrUn 31352749 31353515 766 False 701.000000 701 83.954000 1181 1922 1 chrUn.!!$F1 741
4 TraesCS6A01G059900 chrUn 76955691 76958959 3268 False 619.142857 1716 93.475143 245 2897 7 chrUn.!!$F2 2652
5 TraesCS6A01G059900 chr2D 631307119 631307863 744 False 725.000000 725 84.987000 1185 1895 1 chr2D.!!$F2 710
6 TraesCS6A01G059900 chr2D 647974275 647975082 807 True 429.000000 704 86.147000 1181 1950 2 chr2D.!!$R2 769
7 TraesCS6A01G059900 chr2B 744317812 744318393 581 True 636.000000 636 86.792000 1327 1895 1 chr2B.!!$R1 568
8 TraesCS6A01G059900 chr2B 774839221 774839979 758 False 636.000000 636 82.853000 1181 1895 1 chr2B.!!$F2 714
9 TraesCS6A01G059900 chr1D 432549990 432550749 759 True 383.000000 608 86.578500 1181 1895 2 chr1D.!!$R1 714
10 TraesCS6A01G059900 chr2A 770923340 770923849 509 False 250.000000 250 76.923000 1363 1861 1 chr2A.!!$F1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.041047 CATCCACTGTGCAACACGTG 60.041 55.0 15.48 15.48 45.67 4.49 F
343 344 0.237235 CAACCGTGGAATGTGGTTCG 59.763 55.0 0.00 0.00 43.90 3.95 F
1564 2389 0.324943 AGACGCTGGTGCCAAATAGT 59.675 50.0 0.00 0.00 35.36 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 2025 0.250124 AATGTTCAAGGGCGACGTCA 60.250 50.000 17.16 0.0 0.00 4.35 R
1765 2624 1.656441 CACTGCTTGGGTGCAAGAC 59.344 57.895 0.00 0.0 42.83 3.01 R
2796 3783 0.893447 AAAGAGTAACCCCGACCTCG 59.107 55.000 0.00 0.0 39.44 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 9.627395 TTTTTGAAAACTATGAACAAGTTTCGA 57.373 25.926 2.02 0.00 44.35 3.71
69 70 9.627395 TTTTGAAAACTATGAACAAGTTTCGAA 57.373 25.926 0.00 0.00 44.35 3.71
70 71 9.627395 TTTGAAAACTATGAACAAGTTTCGAAA 57.373 25.926 6.47 6.47 44.35 3.46
71 72 9.796120 TTGAAAACTATGAACAAGTTTCGAAAT 57.204 25.926 14.69 0.00 44.35 2.17
72 73 9.796120 TGAAAACTATGAACAAGTTTCGAAATT 57.204 25.926 14.69 7.02 44.35 1.82
74 75 9.796120 AAAACTATGAACAAGTTTCGAAATTGA 57.204 25.926 25.90 10.42 44.35 2.57
75 76 9.965824 AAACTATGAACAAGTTTCGAAATTGAT 57.034 25.926 25.90 19.38 42.09 2.57
76 77 8.955061 ACTATGAACAAGTTTCGAAATTGATG 57.045 30.769 25.90 19.10 0.00 3.07
77 78 8.783093 ACTATGAACAAGTTTCGAAATTGATGA 58.217 29.630 25.90 16.20 0.00 2.92
78 79 9.611284 CTATGAACAAGTTTCGAAATTGATGAA 57.389 29.630 25.90 15.26 0.00 2.57
79 80 7.678194 TGAACAAGTTTCGAAATTGATGAAC 57.322 32.000 25.90 10.73 0.00 3.18
80 81 7.254137 TGAACAAGTTTCGAAATTGATGAACA 58.746 30.769 25.90 17.84 0.00 3.18
81 82 7.920151 TGAACAAGTTTCGAAATTGATGAACAT 59.080 29.630 25.90 9.99 0.00 2.71
82 83 8.647143 AACAAGTTTCGAAATTGATGAACATT 57.353 26.923 25.90 13.47 0.00 2.71
83 84 8.647143 ACAAGTTTCGAAATTGATGAACATTT 57.353 26.923 25.90 9.05 0.00 2.32
84 85 9.097257 ACAAGTTTCGAAATTGATGAACATTTT 57.903 25.926 25.90 8.58 35.61 1.82
85 86 9.571804 CAAGTTTCGAAATTGATGAACATTTTC 57.428 29.630 14.69 0.00 41.47 2.29
86 87 9.533253 AAGTTTCGAAATTGATGAACATTTTCT 57.467 25.926 14.69 0.00 42.10 2.52
87 88 9.533253 AGTTTCGAAATTGATGAACATTTTCTT 57.467 25.926 14.69 0.00 42.10 2.52
125 126 6.581171 AAAAATGTTTGGCACTTGGAAAAA 57.419 29.167 0.00 0.00 0.00 1.94
126 127 5.816449 AAATGTTTGGCACTTGGAAAAAG 57.184 34.783 0.00 0.00 0.00 2.27
127 128 4.751767 ATGTTTGGCACTTGGAAAAAGA 57.248 36.364 0.00 0.00 0.00 2.52
128 129 4.543590 TGTTTGGCACTTGGAAAAAGAA 57.456 36.364 0.00 0.00 0.00 2.52
129 130 4.899502 TGTTTGGCACTTGGAAAAAGAAA 58.100 34.783 0.00 0.00 0.00 2.52
130 131 5.308825 TGTTTGGCACTTGGAAAAAGAAAA 58.691 33.333 0.00 0.00 0.00 2.29
131 132 5.942826 TGTTTGGCACTTGGAAAAAGAAAAT 59.057 32.000 0.00 0.00 0.00 1.82
132 133 6.432472 TGTTTGGCACTTGGAAAAAGAAAATT 59.568 30.769 0.00 0.00 0.00 1.82
133 134 6.676237 TTGGCACTTGGAAAAAGAAAATTC 57.324 33.333 0.00 0.00 0.00 2.17
134 135 5.738909 TGGCACTTGGAAAAAGAAAATTCA 58.261 33.333 0.00 0.00 0.00 2.57
135 136 6.176183 TGGCACTTGGAAAAAGAAAATTCAA 58.824 32.000 0.00 0.00 0.00 2.69
136 137 6.656693 TGGCACTTGGAAAAAGAAAATTCAAA 59.343 30.769 0.00 0.00 0.00 2.69
137 138 7.175641 TGGCACTTGGAAAAAGAAAATTCAAAA 59.824 29.630 0.00 0.00 0.00 2.44
138 139 8.026026 GGCACTTGGAAAAAGAAAATTCAAAAA 58.974 29.630 0.00 0.00 0.00 1.94
171 172 8.603898 AAAAAGTAAAGGAGGAGAAAAGGAAA 57.396 30.769 0.00 0.00 0.00 3.13
172 173 8.603898 AAAAGTAAAGGAGGAGAAAAGGAAAA 57.396 30.769 0.00 0.00 0.00 2.29
173 174 7.825331 AAGTAAAGGAGGAGAAAAGGAAAAG 57.175 36.000 0.00 0.00 0.00 2.27
174 175 7.150447 AGTAAAGGAGGAGAAAAGGAAAAGA 57.850 36.000 0.00 0.00 0.00 2.52
175 176 7.583625 AGTAAAGGAGGAGAAAAGGAAAAGAA 58.416 34.615 0.00 0.00 0.00 2.52
176 177 8.059461 AGTAAAGGAGGAGAAAAGGAAAAGAAA 58.941 33.333 0.00 0.00 0.00 2.52
177 178 7.733773 AAAGGAGGAGAAAAGGAAAAGAAAA 57.266 32.000 0.00 0.00 0.00 2.29
178 179 7.733773 AAGGAGGAGAAAAGGAAAAGAAAAA 57.266 32.000 0.00 0.00 0.00 1.94
197 198 5.529581 AAAAAGAAAAAGGGAATCGCTCA 57.470 34.783 0.00 0.00 0.00 4.26
198 199 4.773323 AAAGAAAAAGGGAATCGCTCAG 57.227 40.909 0.00 0.00 0.00 3.35
199 200 2.087646 AGAAAAAGGGAATCGCTCAGC 58.912 47.619 0.00 0.00 0.00 4.26
200 201 2.087646 GAAAAAGGGAATCGCTCAGCT 58.912 47.619 0.00 0.00 0.00 4.24
201 202 2.206576 AAAAGGGAATCGCTCAGCTT 57.793 45.000 0.00 0.00 0.00 3.74
202 203 1.743996 AAAGGGAATCGCTCAGCTTC 58.256 50.000 0.00 0.00 0.00 3.86
203 204 0.615331 AAGGGAATCGCTCAGCTTCA 59.385 50.000 0.00 0.00 0.00 3.02
204 205 0.615331 AGGGAATCGCTCAGCTTCAA 59.385 50.000 0.00 0.00 0.00 2.69
205 206 0.729690 GGGAATCGCTCAGCTTCAAC 59.270 55.000 0.00 0.00 0.00 3.18
206 207 0.371645 GGAATCGCTCAGCTTCAACG 59.628 55.000 0.00 0.00 0.00 4.10
207 208 1.071605 GAATCGCTCAGCTTCAACGT 58.928 50.000 0.00 0.00 0.00 3.99
208 209 1.059835 GAATCGCTCAGCTTCAACGTC 59.940 52.381 0.00 0.00 0.00 4.34
209 210 0.244994 ATCGCTCAGCTTCAACGTCT 59.755 50.000 0.00 0.00 0.00 4.18
210 211 0.664466 TCGCTCAGCTTCAACGTCTG 60.664 55.000 0.00 0.00 0.00 3.51
211 212 0.664466 CGCTCAGCTTCAACGTCTGA 60.664 55.000 0.00 4.11 35.74 3.27
212 213 1.502231 GCTCAGCTTCAACGTCTGAA 58.498 50.000 5.53 8.59 41.93 3.02
213 214 1.867233 GCTCAGCTTCAACGTCTGAAA 59.133 47.619 12.17 0.92 43.54 2.69
214 215 2.287915 GCTCAGCTTCAACGTCTGAAAA 59.712 45.455 12.17 2.02 43.54 2.29
215 216 3.242739 GCTCAGCTTCAACGTCTGAAAAA 60.243 43.478 12.17 1.78 43.54 1.94
216 217 4.521943 CTCAGCTTCAACGTCTGAAAAAG 58.478 43.478 12.17 4.87 43.54 2.27
217 218 4.188462 TCAGCTTCAACGTCTGAAAAAGA 58.812 39.130 12.17 8.39 43.54 2.52
218 219 4.271049 TCAGCTTCAACGTCTGAAAAAGAG 59.729 41.667 12.17 4.34 43.54 2.85
219 220 4.271049 CAGCTTCAACGTCTGAAAAAGAGA 59.729 41.667 12.17 0.00 43.54 3.10
220 221 4.271291 AGCTTCAACGTCTGAAAAAGAGAC 59.729 41.667 12.17 0.00 43.54 3.36
221 222 4.034048 GCTTCAACGTCTGAAAAAGAGACA 59.966 41.667 12.17 0.00 43.54 3.41
222 223 5.277538 GCTTCAACGTCTGAAAAAGAGACAT 60.278 40.000 12.17 0.00 43.54 3.06
223 224 5.907197 TCAACGTCTGAAAAAGAGACATC 57.093 39.130 0.00 0.00 39.99 3.06
224 225 4.750098 TCAACGTCTGAAAAAGAGACATCC 59.250 41.667 0.00 0.00 39.99 3.51
225 226 4.336889 ACGTCTGAAAAAGAGACATCCA 57.663 40.909 0.00 0.00 39.99 3.41
226 227 4.058817 ACGTCTGAAAAAGAGACATCCAC 58.941 43.478 0.00 0.00 39.99 4.02
227 228 4.202264 ACGTCTGAAAAAGAGACATCCACT 60.202 41.667 0.00 0.00 39.99 4.00
228 229 4.151335 CGTCTGAAAAAGAGACATCCACTG 59.849 45.833 0.00 0.00 39.99 3.66
229 230 5.059833 GTCTGAAAAAGAGACATCCACTGT 58.940 41.667 0.00 0.00 39.80 3.55
230 231 5.049818 GTCTGAAAAAGAGACATCCACTGTG 60.050 44.000 0.00 0.00 39.80 3.66
231 232 3.565482 TGAAAAAGAGACATCCACTGTGC 59.435 43.478 1.29 0.00 38.54 4.57
232 233 2.936919 AAAGAGACATCCACTGTGCA 57.063 45.000 1.29 0.00 38.54 4.57
233 234 2.936919 AAGAGACATCCACTGTGCAA 57.063 45.000 1.29 0.00 38.54 4.08
234 235 2.175878 AGAGACATCCACTGTGCAAC 57.824 50.000 1.29 0.00 38.54 4.17
236 237 1.532868 GAGACATCCACTGTGCAACAC 59.467 52.381 1.29 0.00 45.67 3.32
237 238 0.235665 GACATCCACTGTGCAACACG 59.764 55.000 1.29 0.00 45.67 4.49
238 239 0.463654 ACATCCACTGTGCAACACGT 60.464 50.000 1.29 0.00 45.67 4.49
239 240 0.041047 CATCCACTGTGCAACACGTG 60.041 55.000 15.48 15.48 45.67 4.49
240 241 0.463654 ATCCACTGTGCAACACGTGT 60.464 50.000 17.22 17.22 45.67 4.49
241 242 1.087202 TCCACTGTGCAACACGTGTC 61.087 55.000 23.61 11.25 45.67 3.67
242 243 1.351707 CACTGTGCAACACGTGTCC 59.648 57.895 23.61 16.34 45.67 4.02
243 244 1.078778 ACTGTGCAACACGTGTCCA 60.079 52.632 23.61 18.81 45.67 4.02
260 261 0.466007 CCATCCCAACATCGCCATCA 60.466 55.000 0.00 0.00 0.00 3.07
265 266 1.683943 CCAACATCGCCATCATCCTT 58.316 50.000 0.00 0.00 0.00 3.36
298 299 1.343069 CTCTCAGCCCCCTATGTACC 58.657 60.000 0.00 0.00 0.00 3.34
343 344 0.237235 CAACCGTGGAATGTGGTTCG 59.763 55.000 0.00 0.00 43.90 3.95
389 390 5.804979 GGGTTATGTCGGTCAAAATGATTTG 59.195 40.000 0.00 0.00 45.92 2.32
401 1074 3.536956 AATGATTTGAGGCAAGCATGG 57.463 42.857 0.00 0.00 0.00 3.66
447 1120 1.268778 GAAAGAAACTTGCCGCGTGC 61.269 55.000 4.92 9.16 41.77 5.34
586 1259 2.482721 GGCTACGTGTGCAAGTACAATT 59.517 45.455 15.35 0.00 31.36 2.32
693 1380 2.813908 CGGCAGTCTACGGGTTGC 60.814 66.667 0.00 0.00 35.87 4.17
738 1425 3.904136 AGACAAGAAAATCAAGGCACG 57.096 42.857 0.00 0.00 0.00 5.34
766 1453 2.294512 ACGTAGGCTATTAGGGCGTAAC 59.705 50.000 1.16 0.00 36.85 2.50
838 1526 1.146263 GGCCTGCCTACACGCTATT 59.854 57.895 0.00 0.00 0.00 1.73
839 1527 0.463833 GGCCTGCCTACACGCTATTT 60.464 55.000 0.00 0.00 0.00 1.40
840 1528 0.657840 GCCTGCCTACACGCTATTTG 59.342 55.000 0.00 0.00 0.00 2.32
1257 2025 3.503748 CCTTCCGAATTTCTCAGCTTGTT 59.496 43.478 0.00 0.00 0.00 2.83
1359 2177 9.130312 GCGAGTACTTAATACTTATGATTGAGG 57.870 37.037 0.00 0.00 44.64 3.86
1456 2280 1.404986 CGTCTGCATCGGTTTTAGGGA 60.405 52.381 0.00 0.00 0.00 4.20
1564 2389 0.324943 AGACGCTGGTGCCAAATAGT 59.675 50.000 0.00 0.00 35.36 2.12
1765 2624 5.522460 GCATTTTGTCCAGATGAATCCAATG 59.478 40.000 0.00 0.00 0.00 2.82
1912 2771 1.135112 CCGACGATCCATGACTCAACA 60.135 52.381 0.00 0.00 0.00 3.33
2003 2864 7.381789 TGTTATGGCCTATGGATTACAGTTA 57.618 36.000 3.32 0.00 0.00 2.24
2010 2871 9.295825 TGGCCTATGGATTACAGTTATAAAATG 57.704 33.333 3.32 0.00 0.00 2.32
2067 2928 4.422073 TGGCCTATGGATTACAGTTCTG 57.578 45.455 3.32 0.00 0.00 3.02
2213 3075 1.572085 GGGTGCAGCTATAGCGCATG 61.572 60.000 31.78 21.63 46.00 4.06
2225 3087 1.023513 AGCGCATGAGACCAGCTTTC 61.024 55.000 11.47 0.00 34.05 2.62
2226 3088 1.023513 GCGCATGAGACCAGCTTTCT 61.024 55.000 0.30 0.00 0.00 2.52
2227 3089 1.005340 CGCATGAGACCAGCTTTCTC 58.995 55.000 13.28 13.28 40.10 2.87
2228 3090 1.405256 CGCATGAGACCAGCTTTCTCT 60.405 52.381 18.72 4.35 40.30 3.10
2229 3091 2.278854 GCATGAGACCAGCTTTCTCTC 58.721 52.381 18.72 12.37 40.30 3.20
2230 3092 2.093553 GCATGAGACCAGCTTTCTCTCT 60.094 50.000 18.72 7.46 40.30 3.10
2231 3093 3.784338 CATGAGACCAGCTTTCTCTCTC 58.216 50.000 18.72 8.94 40.30 3.20
2232 3094 3.168035 TGAGACCAGCTTTCTCTCTCT 57.832 47.619 18.72 0.00 40.30 3.10
2233 3095 3.088532 TGAGACCAGCTTTCTCTCTCTC 58.911 50.000 18.72 6.43 40.30 3.20
2234 3096 3.245229 TGAGACCAGCTTTCTCTCTCTCT 60.245 47.826 18.72 0.00 40.30 3.10
2235 3097 3.356290 AGACCAGCTTTCTCTCTCTCTC 58.644 50.000 0.00 0.00 0.00 3.20
2236 3098 3.010584 AGACCAGCTTTCTCTCTCTCTCT 59.989 47.826 0.00 0.00 0.00 3.10
2237 3099 3.356290 ACCAGCTTTCTCTCTCTCTCTC 58.644 50.000 0.00 0.00 0.00 3.20
2238 3100 3.010584 ACCAGCTTTCTCTCTCTCTCTCT 59.989 47.826 0.00 0.00 0.00 3.10
2239 3101 3.629398 CCAGCTTTCTCTCTCTCTCTCTC 59.371 52.174 0.00 0.00 0.00 3.20
2240 3102 4.521146 CAGCTTTCTCTCTCTCTCTCTCT 58.479 47.826 0.00 0.00 0.00 3.10
2241 3103 4.574013 CAGCTTTCTCTCTCTCTCTCTCTC 59.426 50.000 0.00 0.00 0.00 3.20
2242 3104 4.472833 AGCTTTCTCTCTCTCTCTCTCTCT 59.527 45.833 0.00 0.00 0.00 3.10
2243 3105 4.813697 GCTTTCTCTCTCTCTCTCTCTCTC 59.186 50.000 0.00 0.00 0.00 3.20
2244 3106 5.396213 GCTTTCTCTCTCTCTCTCTCTCTCT 60.396 48.000 0.00 0.00 0.00 3.10
2245 3107 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
2246 3108 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2247 3109 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2248 3110 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2249 3111 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2250 3112 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2251 3113 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2385 3247 2.290577 CCAAGCTAGGTTGAAGAAGGCT 60.291 50.000 31.19 0.00 0.00 4.58
2471 3333 2.677199 CAAGTTCTAAGAGTGCGAGCA 58.323 47.619 0.00 0.00 0.00 4.26
2690 3677 5.794894 AGTTCATTAGCCTATATTCCACCG 58.205 41.667 0.00 0.00 0.00 4.94
2796 3783 3.063316 GGCTTGATCTCGAAGCTCTTTTC 59.937 47.826 13.99 0.00 44.44 2.29
2874 3861 1.139058 GGTGCCATCGTCTGAACCTAT 59.861 52.381 0.00 0.00 31.88 2.57
2898 3885 1.616159 GCTGGTTGCTACTCCCAAAA 58.384 50.000 0.00 0.00 38.95 2.44
2899 3886 1.541588 GCTGGTTGCTACTCCCAAAAG 59.458 52.381 0.00 0.00 38.95 2.27
2900 3887 2.863809 CTGGTTGCTACTCCCAAAAGT 58.136 47.619 0.00 0.00 0.00 2.66
2902 3889 4.394729 CTGGTTGCTACTCCCAAAAGTTA 58.605 43.478 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.627395 TCGAAACTTGTTCATAGTTTTCAAAAA 57.373 25.926 0.00 0.00 43.76 1.94
43 44 9.627395 TTCGAAACTTGTTCATAGTTTTCAAAA 57.373 25.926 0.00 0.00 43.76 2.44
44 45 9.627395 TTTCGAAACTTGTTCATAGTTTTCAAA 57.373 25.926 6.47 0.00 43.76 2.69
45 46 9.796120 ATTTCGAAACTTGTTCATAGTTTTCAA 57.204 25.926 13.81 0.00 43.76 2.69
46 47 9.796120 AATTTCGAAACTTGTTCATAGTTTTCA 57.204 25.926 13.81 0.00 43.76 2.69
48 49 9.796120 TCAATTTCGAAACTTGTTCATAGTTTT 57.204 25.926 13.81 0.00 43.76 2.43
49 50 9.965824 ATCAATTTCGAAACTTGTTCATAGTTT 57.034 25.926 13.81 0.00 45.73 2.66
50 51 9.398170 CATCAATTTCGAAACTTGTTCATAGTT 57.602 29.630 13.81 0.00 37.43 2.24
51 52 8.783093 TCATCAATTTCGAAACTTGTTCATAGT 58.217 29.630 13.81 0.00 0.00 2.12
52 53 9.611284 TTCATCAATTTCGAAACTTGTTCATAG 57.389 29.630 13.81 7.40 0.00 2.23
53 54 9.393249 GTTCATCAATTTCGAAACTTGTTCATA 57.607 29.630 13.81 3.90 0.00 2.15
54 55 7.920151 TGTTCATCAATTTCGAAACTTGTTCAT 59.080 29.630 13.81 6.38 0.00 2.57
55 56 7.254137 TGTTCATCAATTTCGAAACTTGTTCA 58.746 30.769 13.81 8.97 0.00 3.18
56 57 7.678194 TGTTCATCAATTTCGAAACTTGTTC 57.322 32.000 13.81 6.96 0.00 3.18
57 58 8.647143 AATGTTCATCAATTTCGAAACTTGTT 57.353 26.923 13.81 10.71 0.00 2.83
58 59 8.647143 AAATGTTCATCAATTTCGAAACTTGT 57.353 26.923 13.81 7.30 0.00 3.16
59 60 9.571804 GAAAATGTTCATCAATTTCGAAACTTG 57.428 29.630 13.81 17.11 36.59 3.16
60 61 9.533253 AGAAAATGTTCATCAATTTCGAAACTT 57.467 25.926 13.81 6.27 45.37 2.66
61 62 9.533253 AAGAAAATGTTCATCAATTTCGAAACT 57.467 25.926 13.81 0.00 45.37 2.66
102 103 6.432472 TCTTTTTCCAAGTGCCAAACATTTTT 59.568 30.769 0.00 0.00 0.00 1.94
103 104 5.942826 TCTTTTTCCAAGTGCCAAACATTTT 59.057 32.000 0.00 0.00 0.00 1.82
104 105 5.495640 TCTTTTTCCAAGTGCCAAACATTT 58.504 33.333 0.00 0.00 0.00 2.32
105 106 5.096443 TCTTTTTCCAAGTGCCAAACATT 57.904 34.783 0.00 0.00 0.00 2.71
106 107 4.751767 TCTTTTTCCAAGTGCCAAACAT 57.248 36.364 0.00 0.00 0.00 2.71
107 108 4.543590 TTCTTTTTCCAAGTGCCAAACA 57.456 36.364 0.00 0.00 0.00 2.83
108 109 5.871465 TTTTCTTTTTCCAAGTGCCAAAC 57.129 34.783 0.00 0.00 0.00 2.93
109 110 6.656693 TGAATTTTCTTTTTCCAAGTGCCAAA 59.343 30.769 0.00 0.00 0.00 3.28
110 111 6.176183 TGAATTTTCTTTTTCCAAGTGCCAA 58.824 32.000 0.00 0.00 0.00 4.52
111 112 5.738909 TGAATTTTCTTTTTCCAAGTGCCA 58.261 33.333 0.00 0.00 0.00 4.92
112 113 6.676237 TTGAATTTTCTTTTTCCAAGTGCC 57.324 33.333 0.00 0.00 0.00 5.01
113 114 8.962857 TTTTTGAATTTTCTTTTTCCAAGTGC 57.037 26.923 0.00 0.00 0.00 4.40
146 147 8.603898 TTTCCTTTTCTCCTCCTTTACTTTTT 57.396 30.769 0.00 0.00 0.00 1.94
147 148 8.603898 TTTTCCTTTTCTCCTCCTTTACTTTT 57.396 30.769 0.00 0.00 0.00 2.27
148 149 8.059461 TCTTTTCCTTTTCTCCTCCTTTACTTT 58.941 33.333 0.00 0.00 0.00 2.66
149 150 7.583625 TCTTTTCCTTTTCTCCTCCTTTACTT 58.416 34.615 0.00 0.00 0.00 2.24
150 151 7.150447 TCTTTTCCTTTTCTCCTCCTTTACT 57.850 36.000 0.00 0.00 0.00 2.24
151 152 7.818997 TTCTTTTCCTTTTCTCCTCCTTTAC 57.181 36.000 0.00 0.00 0.00 2.01
152 153 8.832458 TTTTCTTTTCCTTTTCTCCTCCTTTA 57.168 30.769 0.00 0.00 0.00 1.85
153 154 7.733773 TTTTCTTTTCCTTTTCTCCTCCTTT 57.266 32.000 0.00 0.00 0.00 3.11
154 155 7.733773 TTTTTCTTTTCCTTTTCTCCTCCTT 57.266 32.000 0.00 0.00 0.00 3.36
175 176 5.529581 TGAGCGATTCCCTTTTTCTTTTT 57.470 34.783 0.00 0.00 0.00 1.94
176 177 4.559502 GCTGAGCGATTCCCTTTTTCTTTT 60.560 41.667 0.00 0.00 0.00 2.27
177 178 3.057245 GCTGAGCGATTCCCTTTTTCTTT 60.057 43.478 0.00 0.00 0.00 2.52
178 179 2.489722 GCTGAGCGATTCCCTTTTTCTT 59.510 45.455 0.00 0.00 0.00 2.52
179 180 2.087646 GCTGAGCGATTCCCTTTTTCT 58.912 47.619 0.00 0.00 0.00 2.52
180 181 2.087646 AGCTGAGCGATTCCCTTTTTC 58.912 47.619 0.00 0.00 0.00 2.29
181 182 2.206576 AGCTGAGCGATTCCCTTTTT 57.793 45.000 0.00 0.00 0.00 1.94
182 183 2.087646 GAAGCTGAGCGATTCCCTTTT 58.912 47.619 0.00 0.00 31.94 2.27
183 184 1.003580 TGAAGCTGAGCGATTCCCTTT 59.996 47.619 0.00 0.00 37.22 3.11
184 185 0.615331 TGAAGCTGAGCGATTCCCTT 59.385 50.000 0.00 0.00 37.22 3.95
185 186 0.615331 TTGAAGCTGAGCGATTCCCT 59.385 50.000 0.00 0.00 37.22 4.20
186 187 0.729690 GTTGAAGCTGAGCGATTCCC 59.270 55.000 0.00 0.00 37.22 3.97
187 188 0.371645 CGTTGAAGCTGAGCGATTCC 59.628 55.000 0.00 0.00 37.22 3.01
188 189 1.059835 GACGTTGAAGCTGAGCGATTC 59.940 52.381 8.89 0.00 38.49 2.52
189 190 1.071605 GACGTTGAAGCTGAGCGATT 58.928 50.000 8.89 0.00 0.00 3.34
190 191 0.244994 AGACGTTGAAGCTGAGCGAT 59.755 50.000 8.89 0.00 0.00 4.58
191 192 0.664466 CAGACGTTGAAGCTGAGCGA 60.664 55.000 8.89 0.00 0.00 4.93
192 193 0.664466 TCAGACGTTGAAGCTGAGCG 60.664 55.000 0.00 0.00 34.02 5.03
193 194 1.502231 TTCAGACGTTGAAGCTGAGC 58.498 50.000 0.00 0.00 40.82 4.26
194 195 4.271049 TCTTTTTCAGACGTTGAAGCTGAG 59.729 41.667 11.25 9.02 46.01 3.35
195 196 4.188462 TCTTTTTCAGACGTTGAAGCTGA 58.812 39.130 11.25 6.55 46.01 4.26
196 197 4.271049 TCTCTTTTTCAGACGTTGAAGCTG 59.729 41.667 11.25 4.52 46.01 4.24
197 198 4.271291 GTCTCTTTTTCAGACGTTGAAGCT 59.729 41.667 11.25 0.00 46.01 3.74
198 199 4.034048 TGTCTCTTTTTCAGACGTTGAAGC 59.966 41.667 11.25 0.00 46.01 3.86
199 200 5.718649 TGTCTCTTTTTCAGACGTTGAAG 57.281 39.130 11.25 3.69 46.01 3.02
200 201 5.236478 GGATGTCTCTTTTTCAGACGTTGAA 59.764 40.000 8.47 8.47 42.91 2.69
201 202 4.750098 GGATGTCTCTTTTTCAGACGTTGA 59.250 41.667 0.00 0.00 42.91 3.18
202 203 4.511454 TGGATGTCTCTTTTTCAGACGTTG 59.489 41.667 0.00 0.00 42.91 4.10
203 204 4.511826 GTGGATGTCTCTTTTTCAGACGTT 59.488 41.667 0.00 0.00 42.91 3.99
204 205 4.058817 GTGGATGTCTCTTTTTCAGACGT 58.941 43.478 0.00 0.00 42.91 4.34
205 206 4.151335 CAGTGGATGTCTCTTTTTCAGACG 59.849 45.833 0.00 0.00 42.91 4.18
206 207 5.049818 CACAGTGGATGTCTCTTTTTCAGAC 60.050 44.000 0.00 0.00 41.41 3.51
207 208 5.059161 CACAGTGGATGTCTCTTTTTCAGA 58.941 41.667 0.00 0.00 41.41 3.27
208 209 4.320057 GCACAGTGGATGTCTCTTTTTCAG 60.320 45.833 1.84 0.00 41.41 3.02
209 210 3.565482 GCACAGTGGATGTCTCTTTTTCA 59.435 43.478 1.84 0.00 41.41 2.69
210 211 3.565482 TGCACAGTGGATGTCTCTTTTTC 59.435 43.478 1.84 0.00 41.41 2.29
211 212 3.554934 TGCACAGTGGATGTCTCTTTTT 58.445 40.909 1.84 0.00 41.41 1.94
212 213 3.213206 TGCACAGTGGATGTCTCTTTT 57.787 42.857 1.84 0.00 41.41 2.27
213 214 2.880890 GTTGCACAGTGGATGTCTCTTT 59.119 45.455 1.84 0.00 41.41 2.52
214 215 2.158769 TGTTGCACAGTGGATGTCTCTT 60.159 45.455 1.84 0.00 41.41 2.85
215 216 1.417517 TGTTGCACAGTGGATGTCTCT 59.582 47.619 1.84 0.00 41.41 3.10
216 217 1.532868 GTGTTGCACAGTGGATGTCTC 59.467 52.381 1.84 0.00 41.41 3.36
217 218 1.597742 GTGTTGCACAGTGGATGTCT 58.402 50.000 1.84 0.00 41.41 3.41
218 219 0.235665 CGTGTTGCACAGTGGATGTC 59.764 55.000 1.84 0.00 41.41 3.06
219 220 0.463654 ACGTGTTGCACAGTGGATGT 60.464 50.000 1.84 0.00 45.43 3.06
220 221 0.041047 CACGTGTTGCACAGTGGATG 60.041 55.000 7.58 0.00 36.27 3.51
221 222 0.463654 ACACGTGTTGCACAGTGGAT 60.464 50.000 17.22 0.00 40.35 3.41
222 223 1.078778 ACACGTGTTGCACAGTGGA 60.079 52.632 17.22 0.00 40.35 4.02
223 224 1.351707 GACACGTGTTGCACAGTGG 59.648 57.895 24.26 0.00 40.35 4.00
224 225 1.351707 GGACACGTGTTGCACAGTG 59.648 57.895 24.26 16.34 41.11 3.66
225 226 0.463654 ATGGACACGTGTTGCACAGT 60.464 50.000 24.26 0.00 33.40 3.55
226 227 0.235665 GATGGACACGTGTTGCACAG 59.764 55.000 24.26 0.00 33.40 3.66
227 228 1.163420 GGATGGACACGTGTTGCACA 61.163 55.000 24.26 18.79 33.40 4.57
228 229 1.574428 GGATGGACACGTGTTGCAC 59.426 57.895 24.26 13.84 0.00 4.57
229 230 1.599518 GGGATGGACACGTGTTGCA 60.600 57.895 24.26 17.54 0.00 4.08
230 231 1.169661 TTGGGATGGACACGTGTTGC 61.170 55.000 24.26 12.33 0.00 4.17
231 232 0.591170 GTTGGGATGGACACGTGTTG 59.409 55.000 24.26 0.00 0.00 3.33
232 233 0.181587 TGTTGGGATGGACACGTGTT 59.818 50.000 24.26 6.90 0.00 3.32
233 234 0.400213 ATGTTGGGATGGACACGTGT 59.600 50.000 23.64 23.64 0.00 4.49
234 235 1.086696 GATGTTGGGATGGACACGTG 58.913 55.000 15.48 15.48 0.00 4.49
235 236 0.391130 CGATGTTGGGATGGACACGT 60.391 55.000 0.00 0.00 0.00 4.49
236 237 1.705337 GCGATGTTGGGATGGACACG 61.705 60.000 0.00 0.00 0.00 4.49
237 238 1.376609 GGCGATGTTGGGATGGACAC 61.377 60.000 0.00 0.00 0.00 3.67
238 239 1.077787 GGCGATGTTGGGATGGACA 60.078 57.895 0.00 0.00 0.00 4.02
239 240 0.466189 ATGGCGATGTTGGGATGGAC 60.466 55.000 0.00 0.00 0.00 4.02
240 241 0.179020 GATGGCGATGTTGGGATGGA 60.179 55.000 0.00 0.00 0.00 3.41
241 242 0.466007 TGATGGCGATGTTGGGATGG 60.466 55.000 0.00 0.00 0.00 3.51
242 243 1.538512 GATGATGGCGATGTTGGGATG 59.461 52.381 0.00 0.00 0.00 3.51
243 244 1.546323 GGATGATGGCGATGTTGGGAT 60.546 52.381 0.00 0.00 0.00 3.85
260 261 1.515954 CCGTAGTCGTGGCAAGGAT 59.484 57.895 0.00 0.00 35.01 3.24
343 344 1.212616 CTTCCCATTCATCTCGCGAC 58.787 55.000 3.71 0.00 0.00 5.19
389 390 0.319405 AAAGTTGCCATGCTTGCCTC 59.681 50.000 0.00 0.00 0.00 4.70
401 1074 4.782156 ACAAACAAAAGCACAAAAGTTGC 58.218 34.783 0.00 0.00 40.52 4.17
447 1120 3.181483 GCAAGGATGGCAAATTCTAGTGG 60.181 47.826 0.00 0.00 32.79 4.00
693 1380 6.564709 TGTTTCTCAAATCTCTGGTGATTG 57.435 37.500 0.00 0.00 36.84 2.67
838 1526 4.142359 ACGTTTGTTTATGCTCCACAACAA 60.142 37.500 0.00 0.00 37.35 2.83
839 1527 3.378742 ACGTTTGTTTATGCTCCACAACA 59.621 39.130 0.00 0.00 30.12 3.33
840 1528 3.959943 ACGTTTGTTTATGCTCCACAAC 58.040 40.909 0.00 0.00 30.12 3.32
1257 2025 0.250124 AATGTTCAAGGGCGACGTCA 60.250 50.000 17.16 0.00 0.00 4.35
1359 2177 2.123342 CTCAGCGATCGATCTCAAACC 58.877 52.381 21.57 0.00 0.00 3.27
1456 2280 2.224450 CCGAGGTGGTACCAGAAAGTTT 60.224 50.000 16.93 0.00 41.95 2.66
1564 2389 5.580691 CCTAAGATAGTGCATGTTTCAACGA 59.419 40.000 0.00 0.00 0.00 3.85
1765 2624 1.656441 CACTGCTTGGGTGCAAGAC 59.344 57.895 0.00 0.00 42.83 3.01
1912 2771 4.680278 ATCCATGGGCCATAACATATGT 57.320 40.909 20.73 1.41 0.00 2.29
2010 2871 7.808856 AGTCGAGTCAAGTAGAAAAACATACTC 59.191 37.037 0.00 0.00 31.03 2.59
2024 2885 6.507900 CCATAACATATGAGTCGAGTCAAGT 58.492 40.000 25.83 20.22 0.00 3.16
2213 3075 3.356290 AGAGAGAGAGAAAGCTGGTCTC 58.644 50.000 16.50 16.50 41.62 3.36
2225 3087 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2226 3088 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2227 3089 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2228 3090 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2229 3091 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2230 3092 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2231 3093 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2232 3094 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2233 3095 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2234 3096 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2235 3097 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2236 3098 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2237 3099 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2238 3100 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2239 3101 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2240 3102 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2241 3103 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2242 3104 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2243 3105 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
2244 3106 7.921041 AATAAGAGAGAGAGAGAGAGAGAGA 57.079 40.000 0.00 0.00 0.00 3.10
2245 3107 8.206867 TGAAATAAGAGAGAGAGAGAGAGAGAG 58.793 40.741 0.00 0.00 0.00 3.20
2246 3108 8.089625 TGAAATAAGAGAGAGAGAGAGAGAGA 57.910 38.462 0.00 0.00 0.00 3.10
2247 3109 7.989741 ACTGAAATAAGAGAGAGAGAGAGAGAG 59.010 40.741 0.00 0.00 0.00 3.20
2248 3110 7.770433 CACTGAAATAAGAGAGAGAGAGAGAGA 59.230 40.741 0.00 0.00 0.00 3.10
2249 3111 7.012704 CCACTGAAATAAGAGAGAGAGAGAGAG 59.987 44.444 0.00 0.00 0.00 3.20
2250 3112 6.828273 CCACTGAAATAAGAGAGAGAGAGAGA 59.172 42.308 0.00 0.00 0.00 3.10
2251 3113 6.603201 ACCACTGAAATAAGAGAGAGAGAGAG 59.397 42.308 0.00 0.00 0.00 3.20
2311 3173 7.798710 AGGCTAGCTAGTCATTATTATTGGA 57.201 36.000 26.47 0.00 0.00 3.53
2385 3247 3.133362 ACCAACTTTGTAGTCTTGACGGA 59.867 43.478 0.00 0.00 31.99 4.69
2708 3695 3.569491 AGGGCAAATCCATGTATCCAAG 58.431 45.455 0.00 0.00 36.21 3.61
2796 3783 0.893447 AAAGAGTAACCCCGACCTCG 59.107 55.000 0.00 0.00 39.44 4.63
2834 3821 5.175127 CACCAACTTAGCAAAAAGGTTGTT 58.825 37.500 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.