Multiple sequence alignment - TraesCS6A01G059800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G059800 chr6A 100.000 2591 0 0 1 2591 31585348 31582758 0.000000e+00 4785.0
1 TraesCS6A01G059800 chr6A 81.934 548 57 21 1716 2224 47441226 47441770 2.380000e-115 425.0
2 TraesCS6A01G059800 chr6A 82.075 530 62 20 1716 2224 47452975 47453492 3.080000e-114 422.0
3 TraesCS6A01G059800 chr6A 75.945 291 48 18 1325 1602 582516808 582517089 2.090000e-26 130.0
4 TraesCS6A01G059800 chr6A 77.640 161 31 3 1041 1197 582264833 582264992 2.750000e-15 93.5
5 TraesCS6A01G059800 chrUn 89.057 1654 84 35 46 1658 76959937 76961534 0.000000e+00 1962.0
6 TraesCS6A01G059800 chrUn 91.772 1033 41 15 648 1657 104042477 104041466 0.000000e+00 1397.0
7 TraesCS6A01G059800 chrUn 93.788 660 28 6 1 657 104044177 104043528 0.000000e+00 979.0
8 TraesCS6A01G059800 chrUn 83.333 588 52 16 1679 2224 89764372 89763789 3.850000e-138 501.0
9 TraesCS6A01G059800 chrUn 93.421 152 8 2 2224 2374 257855042 257855192 9.330000e-55 224.0
10 TraesCS6A01G059800 chrUn 92.763 152 9 2 2224 2374 223716080 223715930 4.340000e-53 219.0
11 TraesCS6A01G059800 chrUn 97.872 47 1 0 1 47 374277712 374277666 5.940000e-12 82.4
12 TraesCS6A01G059800 chr1D 83.305 587 54 12 1679 2224 192417203 192417786 3.850000e-138 501.0
13 TraesCS6A01G059800 chr1D 82.822 326 40 9 1684 2001 296162123 296161806 7.060000e-71 278.0
14 TraesCS6A01G059800 chr7D 81.104 598 57 30 1679 2224 426183587 426182994 6.630000e-116 427.0
15 TraesCS6A01G059800 chr7D 82.022 534 56 14 1678 2176 568533359 568532831 3.990000e-113 418.0
16 TraesCS6A01G059800 chr7D 86.726 226 20 4 2009 2224 199898288 199898513 2.580000e-60 243.0
17 TraesCS6A01G059800 chr7D 86.344 227 20 5 2009 2224 530582632 530582858 1.200000e-58 237.0
18 TraesCS6A01G059800 chr7D 93.421 152 8 2 2224 2374 203529643 203529793 9.330000e-55 224.0
19 TraesCS6A01G059800 chr7D 93.421 152 8 2 2224 2374 381881476 381881626 9.330000e-55 224.0
20 TraesCS6A01G059800 chr5B 80.628 573 71 19 1680 2224 13220060 13219500 8.630000e-110 407.0
21 TraesCS6A01G059800 chr5B 83.333 300 32 5 1319 1612 602649045 602648758 7.110000e-66 261.0
22 TraesCS6A01G059800 chr5B 82.667 300 34 7 1317 1610 602483856 602483569 1.540000e-62 250.0
23 TraesCS6A01G059800 chr5B 87.640 89 11 0 1106 1194 602649208 602649120 1.270000e-18 104.0
24 TraesCS6A01G059800 chr4A 80.656 579 63 29 1680 2224 589798500 589797937 1.120000e-108 403.0
25 TraesCS6A01G059800 chr2D 80.584 582 58 19 1685 2224 411754877 411754309 5.200000e-107 398.0
26 TraesCS6A01G059800 chr2D 80.873 481 38 27 1788 2224 76625545 76626015 1.920000e-86 329.0
27 TraesCS6A01G059800 chr2D 79.750 400 35 16 1869 2222 498869971 498870370 5.540000e-62 248.0
28 TraesCS6A01G059800 chr1B 79.218 563 86 19 1680 2224 460576097 460575548 1.900000e-96 363.0
29 TraesCS6A01G059800 chr1B 79.145 585 64 33 1679 2222 574259697 574260264 4.100000e-93 351.0
30 TraesCS6A01G059800 chr1B 93.421 152 8 2 2224 2374 638719035 638719185 9.330000e-55 224.0
31 TraesCS6A01G059800 chr1B 85.572 201 29 0 2374 2574 134732995 134733195 7.260000e-51 211.0
32 TraesCS6A01G059800 chr1B 100.000 47 0 0 1 47 9099333 9099287 1.280000e-13 87.9
33 TraesCS6A01G059800 chr4D 79.381 582 66 25 1678 2224 34598443 34597881 6.820000e-96 361.0
34 TraesCS6A01G059800 chr4D 93.421 152 8 2 2224 2374 123730664 123730814 9.330000e-55 224.0
35 TraesCS6A01G059800 chr4D 93.421 152 8 2 2224 2374 134969610 134969460 9.330000e-55 224.0
36 TraesCS6A01G059800 chr7A 78.547 592 69 34 1678 2222 683638251 683638831 1.150000e-88 337.0
37 TraesCS6A01G059800 chr7A 88.780 205 23 0 2374 2578 246714755 246714551 4.280000e-63 252.0
38 TraesCS6A01G059800 chr5D 78.559 569 62 29 1713 2224 367757738 367758303 1.160000e-83 320.0
39 TraesCS6A01G059800 chr5D 83.333 300 32 7 1319 1612 488938393 488938106 7.110000e-66 261.0
40 TraesCS6A01G059800 chr5D 82.109 313 31 9 1313 1612 489013482 489013182 7.160000e-61 244.0
41 TraesCS6A01G059800 chr5D 87.000 200 25 1 2375 2574 391316083 391316281 9.330000e-55 224.0
42 TraesCS6A01G059800 chr5D 80.892 314 30 8 1317 1612 489167079 489166778 1.210000e-53 220.0
43 TraesCS6A01G059800 chr5D 85.075 201 30 0 2374 2574 268187847 268187647 3.380000e-49 206.0
44 TraesCS6A01G059800 chr5D 87.952 83 8 2 1114 1195 450373850 450373931 2.120000e-16 97.1
45 TraesCS6A01G059800 chr5A 82.372 312 35 5 1317 1620 610185332 610185033 1.190000e-63 254.0
46 TraesCS6A01G059800 chr5A 81.667 300 37 6 1319 1612 610078779 610078492 1.550000e-57 233.0
47 TraesCS6A01G059800 chr5A 91.011 89 8 0 1106 1194 610078945 610078857 1.260000e-23 121.0
48 TraesCS6A01G059800 chr5A 87.952 83 8 2 1114 1195 569677592 569677673 2.120000e-16 97.1
49 TraesCS6A01G059800 chr6D 87.805 205 25 0 2374 2578 392574978 392574774 9.260000e-60 241.0
50 TraesCS6A01G059800 chr6D 85.572 201 29 0 2374 2574 363288748 363288548 7.260000e-51 211.0
51 TraesCS6A01G059800 chr6D 76.159 302 43 22 1325 1602 435962913 435962617 5.820000e-27 132.0
52 TraesCS6A01G059800 chr6D 76.555 209 30 13 1006 1197 435351119 435351325 2.120000e-16 97.1
53 TraesCS6A01G059800 chr3B 94.079 152 7 2 2224 2374 201605357 201605507 2.010000e-56 230.0
54 TraesCS6A01G059800 chr3B 100.000 47 0 0 1 47 650061132 650061086 1.280000e-13 87.9
55 TraesCS6A01G059800 chr3B 97.872 47 1 0 1 47 827276511 827276465 5.940000e-12 82.4
56 TraesCS6A01G059800 chr3B 97.872 47 1 0 1 47 827339532 827339486 5.940000e-12 82.4
57 TraesCS6A01G059800 chr3B 97.872 47 1 0 1 47 827344200 827344154 5.940000e-12 82.4
58 TraesCS6A01G059800 chr3B 97.872 47 1 0 1 47 827387930 827387884 5.940000e-12 82.4
59 TraesCS6A01G059800 chr6B 93.421 152 8 2 2224 2374 128411500 128411350 9.330000e-55 224.0
60 TraesCS6A01G059800 chr6B 86.341 205 28 0 2374 2578 492016817 492016613 9.330000e-55 224.0
61 TraesCS6A01G059800 chr6B 76.307 287 33 22 1325 1602 658530952 658531212 1.260000e-23 121.0
62 TraesCS6A01G059800 chr6B 77.033 209 29 11 1006 1197 658403071 658403277 4.560000e-18 102.0
63 TraesCS6A01G059800 chr3D 86.500 200 27 0 2375 2574 433296437 433296238 1.210000e-53 220.0
64 TraesCS6A01G059800 chr4B 84.878 205 30 1 2374 2578 442449707 442449504 3.380000e-49 206.0
65 TraesCS6A01G059800 chr3A 100.000 46 0 0 1 46 724835382 724835337 4.590000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G059800 chr6A 31582758 31585348 2590 True 4785 4785 100.000 1 2591 1 chr6A.!!$R1 2590
1 TraesCS6A01G059800 chr6A 47441226 47441770 544 False 425 425 81.934 1716 2224 1 chr6A.!!$F1 508
2 TraesCS6A01G059800 chr6A 47452975 47453492 517 False 422 422 82.075 1716 2224 1 chr6A.!!$F2 508
3 TraesCS6A01G059800 chrUn 76959937 76961534 1597 False 1962 1962 89.057 46 1658 1 chrUn.!!$F1 1612
4 TraesCS6A01G059800 chrUn 104041466 104044177 2711 True 1188 1397 92.780 1 1657 2 chrUn.!!$R4 1656
5 TraesCS6A01G059800 chrUn 89763789 89764372 583 True 501 501 83.333 1679 2224 1 chrUn.!!$R1 545
6 TraesCS6A01G059800 chr1D 192417203 192417786 583 False 501 501 83.305 1679 2224 1 chr1D.!!$F1 545
7 TraesCS6A01G059800 chr7D 426182994 426183587 593 True 427 427 81.104 1679 2224 1 chr7D.!!$R1 545
8 TraesCS6A01G059800 chr7D 568532831 568533359 528 True 418 418 82.022 1678 2176 1 chr7D.!!$R2 498
9 TraesCS6A01G059800 chr5B 13219500 13220060 560 True 407 407 80.628 1680 2224 1 chr5B.!!$R1 544
10 TraesCS6A01G059800 chr4A 589797937 589798500 563 True 403 403 80.656 1680 2224 1 chr4A.!!$R1 544
11 TraesCS6A01G059800 chr2D 411754309 411754877 568 True 398 398 80.584 1685 2224 1 chr2D.!!$R1 539
12 TraesCS6A01G059800 chr1B 460575548 460576097 549 True 363 363 79.218 1680 2224 1 chr1B.!!$R2 544
13 TraesCS6A01G059800 chr1B 574259697 574260264 567 False 351 351 79.145 1679 2222 1 chr1B.!!$F2 543
14 TraesCS6A01G059800 chr4D 34597881 34598443 562 True 361 361 79.381 1678 2224 1 chr4D.!!$R1 546
15 TraesCS6A01G059800 chr7A 683638251 683638831 580 False 337 337 78.547 1678 2222 1 chr7A.!!$F1 544
16 TraesCS6A01G059800 chr5D 367757738 367758303 565 False 320 320 78.559 1713 2224 1 chr5D.!!$F1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
730 1794 1.61363 AGTCACCGGCCTCCAGAAT 60.614 57.895 0.0 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2513 3723 0.030638 GGCGAACAAGCAATGTGTGT 59.969 50.0 0.0 0.0 42.99 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 5.105473 TCCTTTAGGTCTCACCATAAAGACG 60.105 44.000 17.44 8.68 41.95 4.18
77 78 4.970003 GTGTGCTTCTTGTGTTTGTATCAC 59.030 41.667 0.00 0.00 36.48 3.06
88 89 6.195868 TGTGTTTGTATCACGTTGATGTTTC 58.804 36.000 9.77 1.58 37.70 2.78
190 191 9.552695 TCTCCCAAATACATCAGAGATATATGT 57.447 33.333 0.00 0.00 37.58 2.29
201 202 7.320443 TCAGAGATATATGTTGTTTGTTGCC 57.680 36.000 0.00 0.00 0.00 4.52
281 282 3.181474 TGAACCAACCGGAAATCAAAACC 60.181 43.478 9.46 0.00 35.59 3.27
312 313 3.772572 TCTGGGATCAAATCGTGTAAGGA 59.227 43.478 0.00 0.00 33.98 3.36
358 359 8.352201 TGAAATTGTTAAATCTCAGTCAACTGG 58.648 33.333 10.13 1.98 43.91 4.00
365 366 2.036387 TCTCAGTCAACTGGGACGAAA 58.964 47.619 8.66 0.00 45.72 3.46
399 400 9.363763 CGATGCTACAGTCATGAAATCTTATAT 57.636 33.333 0.00 0.00 0.00 0.86
594 596 3.609409 GCCTTTTTCCGTTCTGCTTACAG 60.609 47.826 0.00 0.00 45.95 2.74
730 1794 1.613630 AGTCACCGGCCTCCAGAAT 60.614 57.895 0.00 0.00 0.00 2.40
1243 2333 8.690840 CATACTTCCATTTCAGAAAACGTTTTC 58.309 33.333 35.52 35.52 45.22 2.29
1257 2347 8.845942 GAAAACGTTTTCTTTGGTAGTATGTT 57.154 30.769 35.26 7.90 42.42 2.71
1258 2348 8.845942 AAAACGTTTTCTTTGGTAGTATGTTC 57.154 30.769 20.26 0.00 0.00 3.18
1259 2349 6.549912 ACGTTTTCTTTGGTAGTATGTTCC 57.450 37.500 0.00 0.00 0.00 3.62
1260 2350 6.056884 ACGTTTTCTTTGGTAGTATGTTCCA 58.943 36.000 0.00 0.00 0.00 3.53
1262 2352 6.204108 CGTTTTCTTTGGTAGTATGTTCCAGT 59.796 38.462 0.00 0.00 32.63 4.00
1263 2353 7.570691 CGTTTTCTTTGGTAGTATGTTCCAGTC 60.571 40.741 0.00 0.00 32.63 3.51
1290 2403 4.152580 CAGACATATGTGCATCTGCTGATC 59.847 45.833 14.43 0.00 42.66 2.92
1369 2483 0.391793 GAGGAAGAAGGGCGTGAAGG 60.392 60.000 0.00 0.00 0.00 3.46
1409 2523 2.260869 CCGGTGGCCACAAAGACAG 61.261 63.158 35.78 16.82 0.00 3.51
1410 2524 1.525995 CGGTGGCCACAAAGACAGT 60.526 57.895 35.78 0.00 0.00 3.55
1491 2605 4.779733 ACTGGGACCGGCGGAGAT 62.780 66.667 35.78 10.92 0.00 2.75
1627 2741 4.129737 TGTCCGCTGCCGACTAGC 62.130 66.667 19.10 0.00 37.80 3.42
1644 2766 3.841255 ACTAGCCCTCTTGAGTTAAGCTT 59.159 43.478 3.48 3.48 36.31 3.74
1664 2786 5.746539 GCTTGAGCTGAGTAAATAAGATGC 58.253 41.667 0.00 0.00 38.21 3.91
1665 2787 5.277731 GCTTGAGCTGAGTAAATAAGATGCC 60.278 44.000 0.00 0.00 38.21 4.40
1666 2788 5.620738 TGAGCTGAGTAAATAAGATGCCT 57.379 39.130 0.00 0.00 0.00 4.75
1667 2789 5.363101 TGAGCTGAGTAAATAAGATGCCTG 58.637 41.667 0.00 0.00 0.00 4.85
1668 2790 4.133078 AGCTGAGTAAATAAGATGCCTGC 58.867 43.478 0.00 0.00 0.00 4.85
1669 2791 3.059325 GCTGAGTAAATAAGATGCCTGCG 60.059 47.826 0.00 0.00 0.00 5.18
1670 2792 4.371786 CTGAGTAAATAAGATGCCTGCGA 58.628 43.478 0.00 0.00 0.00 5.10
1671 2793 4.765273 TGAGTAAATAAGATGCCTGCGAA 58.235 39.130 0.00 0.00 0.00 4.70
1672 2794 5.368145 TGAGTAAATAAGATGCCTGCGAAT 58.632 37.500 0.00 0.00 0.00 3.34
1673 2795 6.521162 TGAGTAAATAAGATGCCTGCGAATA 58.479 36.000 0.00 0.00 0.00 1.75
1674 2796 7.161404 TGAGTAAATAAGATGCCTGCGAATAT 58.839 34.615 0.00 0.00 0.00 1.28
1675 2797 7.661437 TGAGTAAATAAGATGCCTGCGAATATT 59.339 33.333 0.00 0.00 0.00 1.28
1676 2798 8.396272 AGTAAATAAGATGCCTGCGAATATTT 57.604 30.769 0.00 0.00 0.00 1.40
1725 2850 2.871133 AGTTGCATTGCATGTTCATCG 58.129 42.857 12.95 0.00 38.76 3.84
1730 2855 2.793585 GCATTGCATGTTCATCGTCAGG 60.794 50.000 3.15 0.00 0.00 3.86
1731 2856 1.452110 TTGCATGTTCATCGTCAGGG 58.548 50.000 0.00 0.00 0.00 4.45
1801 2926 2.592574 GCCTGCCTGCATCGCATA 60.593 61.111 8.87 0.00 38.13 3.14
1809 2935 0.321387 CTGCATCGCATAGAGGGCAT 60.321 55.000 0.00 0.00 40.66 4.40
1829 2959 4.738243 GCATTTACCCTTCGTGTTTGGTTT 60.738 41.667 0.00 0.00 32.27 3.27
1847 2978 4.158025 TGGTTTCCGTTTTTGTGCTTAGAA 59.842 37.500 0.00 0.00 0.00 2.10
1861 2992 6.529051 GTGCTTAGAATGTGAGCAGATGCG 62.529 50.000 0.00 0.00 46.06 4.73
1876 3011 3.730715 CAGATGCGAACTTTTGTTTGGTC 59.269 43.478 0.00 0.00 43.66 4.02
1904 3041 5.804639 ACAGTATTTATGTTCTGCTCACCA 58.195 37.500 0.00 0.00 0.00 4.17
1939 3080 1.299541 GCCTTACCACCACATGATCG 58.700 55.000 0.00 0.00 0.00 3.69
1991 3173 7.966246 ATCAAACAAATCAAGCAAGCAAATA 57.034 28.000 0.00 0.00 0.00 1.40
2042 3239 1.617536 AGCATCCTCCTTCCCTGCA 60.618 57.895 0.00 0.00 35.32 4.41
2050 3247 1.375523 CCTTCCCTGCACCACGTAC 60.376 63.158 0.00 0.00 0.00 3.67
2055 3262 2.579657 CCTGCACCACGTACCCTGA 61.580 63.158 0.00 0.00 0.00 3.86
2076 3283 6.209391 CCTGACCAAAATATGAACAAGTTCCT 59.791 38.462 10.19 3.52 38.77 3.36
2100 3310 3.368116 GCACAAGTACCCATAAGTCTCGT 60.368 47.826 0.00 0.00 0.00 4.18
2123 3333 9.161629 TCGTCACACATCATAAAAGTTCAATAT 57.838 29.630 0.00 0.00 0.00 1.28
2197 3407 2.844451 GCCTGCTGCAACGAAACCA 61.844 57.895 3.02 0.00 40.77 3.67
2204 3414 2.287308 GCTGCAACGAAACCAACACATA 60.287 45.455 0.00 0.00 0.00 2.29
2207 3417 3.378742 TGCAACGAAACCAACACATAACT 59.621 39.130 0.00 0.00 0.00 2.24
2224 3434 0.674534 ACTGAGGAGTCGTGGTTGTC 59.325 55.000 0.00 0.00 0.00 3.18
2225 3435 0.962489 CTGAGGAGTCGTGGTTGTCT 59.038 55.000 0.00 0.00 0.00 3.41
2226 3436 1.341531 CTGAGGAGTCGTGGTTGTCTT 59.658 52.381 0.00 0.00 0.00 3.01
2227 3437 2.557056 CTGAGGAGTCGTGGTTGTCTTA 59.443 50.000 0.00 0.00 0.00 2.10
2228 3438 3.162666 TGAGGAGTCGTGGTTGTCTTAT 58.837 45.455 0.00 0.00 0.00 1.73
2229 3439 3.576982 TGAGGAGTCGTGGTTGTCTTATT 59.423 43.478 0.00 0.00 0.00 1.40
2230 3440 4.768448 TGAGGAGTCGTGGTTGTCTTATTA 59.232 41.667 0.00 0.00 0.00 0.98
2231 3441 5.105877 TGAGGAGTCGTGGTTGTCTTATTAG 60.106 44.000 0.00 0.00 0.00 1.73
2232 3442 5.014858 AGGAGTCGTGGTTGTCTTATTAGA 58.985 41.667 0.00 0.00 0.00 2.10
2257 3467 9.729023 GACGAGAGATAGTCAATATGATATTGG 57.271 37.037 21.34 7.11 37.34 3.16
2258 3468 8.194104 ACGAGAGATAGTCAATATGATATTGGC 58.806 37.037 19.26 19.26 34.10 4.52
2259 3469 7.378194 CGAGAGATAGTCAATATGATATTGGCG 59.622 40.741 20.31 4.03 38.54 5.69
2260 3470 8.072321 AGAGATAGTCAATATGATATTGGCGT 57.928 34.615 20.31 14.66 38.54 5.68
2261 3471 7.978414 AGAGATAGTCAATATGATATTGGCGTG 59.022 37.037 20.31 0.21 38.54 5.34
2262 3472 7.044181 AGATAGTCAATATGATATTGGCGTGG 58.956 38.462 20.31 0.00 38.54 4.94
2263 3473 4.973168 AGTCAATATGATATTGGCGTGGT 58.027 39.130 20.31 4.22 38.54 4.16
2264 3474 5.376625 AGTCAATATGATATTGGCGTGGTT 58.623 37.500 20.31 3.89 38.54 3.67
2265 3475 5.470098 AGTCAATATGATATTGGCGTGGTTC 59.530 40.000 20.31 5.71 38.54 3.62
2266 3476 5.470098 GTCAATATGATATTGGCGTGGTTCT 59.530 40.000 21.34 0.00 0.00 3.01
2267 3477 6.649141 GTCAATATGATATTGGCGTGGTTCTA 59.351 38.462 21.34 0.00 0.00 2.10
2268 3478 6.649141 TCAATATGATATTGGCGTGGTTCTAC 59.351 38.462 21.34 0.00 0.00 2.59
2269 3479 3.188159 TGATATTGGCGTGGTTCTACC 57.812 47.619 0.00 0.00 39.22 3.18
2284 3494 6.463483 GGTTCTACCAACTAAACGAAGAAG 57.537 41.667 0.00 0.00 38.42 2.85
2285 3495 5.987953 GGTTCTACCAACTAAACGAAGAAGT 59.012 40.000 0.00 0.00 38.42 3.01
2286 3496 6.481313 GGTTCTACCAACTAAACGAAGAAGTT 59.519 38.462 0.00 0.00 38.42 2.66
2287 3497 7.011763 GGTTCTACCAACTAAACGAAGAAGTTT 59.988 37.037 0.00 0.78 41.50 2.66
2288 3498 8.393366 GTTCTACCAACTAAACGAAGAAGTTTT 58.607 33.333 0.34 0.00 43.30 2.43
2289 3499 8.496707 TCTACCAACTAAACGAAGAAGTTTTT 57.503 30.769 0.34 0.00 43.30 1.94
2290 3500 8.392612 TCTACCAACTAAACGAAGAAGTTTTTG 58.607 33.333 0.34 1.33 43.30 2.44
2291 3501 7.148355 ACCAACTAAACGAAGAAGTTTTTGA 57.852 32.000 0.34 0.00 43.30 2.69
2292 3502 7.768240 ACCAACTAAACGAAGAAGTTTTTGAT 58.232 30.769 0.34 0.00 43.30 2.57
2293 3503 8.248253 ACCAACTAAACGAAGAAGTTTTTGATT 58.752 29.630 0.34 0.00 43.30 2.57
2294 3504 8.531530 CCAACTAAACGAAGAAGTTTTTGATTG 58.468 33.333 0.34 2.18 43.30 2.67
2295 3505 8.531530 CAACTAAACGAAGAAGTTTTTGATTGG 58.468 33.333 0.34 0.00 43.30 3.16
2296 3506 7.992008 ACTAAACGAAGAAGTTTTTGATTGGA 58.008 30.769 0.34 0.00 43.30 3.53
2297 3507 8.630037 ACTAAACGAAGAAGTTTTTGATTGGAT 58.370 29.630 0.34 0.00 43.30 3.41
2300 3510 9.810545 AAACGAAGAAGTTTTTGATTGGATAAA 57.189 25.926 0.00 0.00 41.04 1.40
2301 3511 8.797266 ACGAAGAAGTTTTTGATTGGATAAAC 57.203 30.769 0.00 0.00 0.00 2.01
2302 3512 8.410141 ACGAAGAAGTTTTTGATTGGATAAACA 58.590 29.630 0.00 0.00 33.94 2.83
2303 3513 8.905702 CGAAGAAGTTTTTGATTGGATAAACAG 58.094 33.333 0.00 0.00 33.94 3.16
2304 3514 8.593492 AAGAAGTTTTTGATTGGATAAACAGC 57.407 30.769 0.00 0.00 33.94 4.40
2305 3515 6.863126 AGAAGTTTTTGATTGGATAAACAGCG 59.137 34.615 0.00 0.00 33.94 5.18
2306 3516 6.084326 AGTTTTTGATTGGATAAACAGCGT 57.916 33.333 0.00 0.00 33.94 5.07
2307 3517 7.209471 AGTTTTTGATTGGATAAACAGCGTA 57.791 32.000 0.00 0.00 33.94 4.42
2308 3518 7.826690 AGTTTTTGATTGGATAAACAGCGTAT 58.173 30.769 0.00 0.00 33.94 3.06
2309 3519 8.952278 AGTTTTTGATTGGATAAACAGCGTATA 58.048 29.630 0.00 0.00 33.94 1.47
2310 3520 9.562583 GTTTTTGATTGGATAAACAGCGTATAA 57.437 29.630 0.00 0.00 32.28 0.98
2312 3522 9.729023 TTTTGATTGGATAAACAGCGTATAATG 57.271 29.630 0.00 0.00 0.00 1.90
2313 3523 8.669946 TTGATTGGATAAACAGCGTATAATGA 57.330 30.769 0.00 0.00 0.00 2.57
2314 3524 8.846943 TGATTGGATAAACAGCGTATAATGAT 57.153 30.769 0.00 0.00 0.00 2.45
2315 3525 9.936759 TGATTGGATAAACAGCGTATAATGATA 57.063 29.630 0.00 0.00 0.00 2.15
2318 3528 9.990360 TTGGATAAACAGCGTATAATGATAAGA 57.010 29.630 0.00 0.00 0.00 2.10
2319 3529 9.419297 TGGATAAACAGCGTATAATGATAAGAC 57.581 33.333 0.00 0.00 0.00 3.01
2320 3530 8.584600 GGATAAACAGCGTATAATGATAAGACG 58.415 37.037 0.00 0.00 36.62 4.18
2328 3538 6.957770 CGTATAATGATAAGACGCTTCTTCG 58.042 40.000 8.98 0.00 41.48 3.79
2329 3539 6.032565 CGTATAATGATAAGACGCTTCTTCGG 59.967 42.308 8.98 0.00 41.48 4.30
2330 3540 1.922570 TGATAAGACGCTTCTTCGGC 58.077 50.000 8.98 1.22 41.48 5.54
2331 3541 1.203758 TGATAAGACGCTTCTTCGGCA 59.796 47.619 8.98 3.78 41.48 5.69
2332 3542 1.588861 GATAAGACGCTTCTTCGGCAC 59.411 52.381 8.98 0.00 41.48 5.01
2333 3543 0.315886 TAAGACGCTTCTTCGGCACA 59.684 50.000 8.98 0.00 41.48 4.57
2334 3544 1.222115 AAGACGCTTCTTCGGCACAC 61.222 55.000 0.00 0.00 37.55 3.82
2335 3545 1.954146 GACGCTTCTTCGGCACACA 60.954 57.895 0.00 0.00 37.45 3.72
2336 3546 1.291877 GACGCTTCTTCGGCACACAT 61.292 55.000 0.00 0.00 37.45 3.21
2337 3547 1.133253 CGCTTCTTCGGCACACATG 59.867 57.895 0.00 0.00 0.00 3.21
2338 3548 1.503542 GCTTCTTCGGCACACATGG 59.496 57.895 0.00 0.00 0.00 3.66
2339 3549 0.955428 GCTTCTTCGGCACACATGGA 60.955 55.000 0.00 0.00 0.00 3.41
2340 3550 1.522668 CTTCTTCGGCACACATGGAA 58.477 50.000 0.00 0.00 0.00 3.53
2341 3551 1.466167 CTTCTTCGGCACACATGGAAG 59.534 52.381 0.00 0.00 37.75 3.46
2342 3552 0.955428 TCTTCGGCACACATGGAAGC 60.955 55.000 0.00 0.00 36.66 3.86
2343 3553 1.228094 TTCGGCACACATGGAAGCA 60.228 52.632 0.00 0.00 0.00 3.91
2344 3554 0.608856 TTCGGCACACATGGAAGCAT 60.609 50.000 0.00 0.00 0.00 3.79
2345 3555 0.251634 TCGGCACACATGGAAGCATA 59.748 50.000 0.00 0.00 0.00 3.14
2346 3556 0.378257 CGGCACACATGGAAGCATAC 59.622 55.000 0.00 0.00 0.00 2.39
2347 3557 0.740737 GGCACACATGGAAGCATACC 59.259 55.000 0.00 0.00 0.00 2.73
2348 3558 1.683011 GGCACACATGGAAGCATACCT 60.683 52.381 0.00 0.00 0.00 3.08
2349 3559 1.672881 GCACACATGGAAGCATACCTC 59.327 52.381 0.00 0.00 0.00 3.85
2350 3560 2.292267 CACACATGGAAGCATACCTCC 58.708 52.381 0.00 0.00 0.00 4.30
2351 3561 2.092753 CACACATGGAAGCATACCTCCT 60.093 50.000 0.00 0.00 0.00 3.69
2352 3562 2.092753 ACACATGGAAGCATACCTCCTG 60.093 50.000 0.00 0.00 0.00 3.86
2353 3563 2.092753 CACATGGAAGCATACCTCCTGT 60.093 50.000 0.00 0.00 0.00 4.00
2354 3564 3.134623 CACATGGAAGCATACCTCCTGTA 59.865 47.826 0.00 0.00 0.00 2.74
2355 3565 3.389329 ACATGGAAGCATACCTCCTGTAG 59.611 47.826 0.00 0.00 31.61 2.74
2356 3566 3.398318 TGGAAGCATACCTCCTGTAGA 57.602 47.619 0.00 0.00 31.61 2.59
2357 3567 3.928754 TGGAAGCATACCTCCTGTAGAT 58.071 45.455 0.00 0.00 31.61 1.98
2358 3568 3.643320 TGGAAGCATACCTCCTGTAGATG 59.357 47.826 0.00 0.00 31.61 2.90
2359 3569 3.898123 GGAAGCATACCTCCTGTAGATGA 59.102 47.826 0.00 0.00 31.61 2.92
2360 3570 4.262249 GGAAGCATACCTCCTGTAGATGAC 60.262 50.000 0.00 0.00 31.61 3.06
2361 3571 4.191804 AGCATACCTCCTGTAGATGACT 57.808 45.455 0.00 0.00 31.61 3.41
2362 3572 4.148838 AGCATACCTCCTGTAGATGACTC 58.851 47.826 0.00 0.00 31.61 3.36
2363 3573 4.141041 AGCATACCTCCTGTAGATGACTCT 60.141 45.833 0.00 0.00 31.61 3.24
2364 3574 4.586841 GCATACCTCCTGTAGATGACTCTT 59.413 45.833 0.00 0.00 31.61 2.85
2365 3575 5.508825 GCATACCTCCTGTAGATGACTCTTG 60.509 48.000 0.00 0.00 31.61 3.02
2366 3576 4.323569 ACCTCCTGTAGATGACTCTTGA 57.676 45.455 0.00 0.00 32.66 3.02
2367 3577 4.678256 ACCTCCTGTAGATGACTCTTGAA 58.322 43.478 0.00 0.00 32.66 2.69
2368 3578 5.276440 ACCTCCTGTAGATGACTCTTGAAT 58.724 41.667 0.00 0.00 32.66 2.57
2369 3579 5.723887 ACCTCCTGTAGATGACTCTTGAATT 59.276 40.000 0.00 0.00 32.66 2.17
2370 3580 6.127196 ACCTCCTGTAGATGACTCTTGAATTC 60.127 42.308 0.00 0.00 32.66 2.17
2371 3581 6.127225 CCTCCTGTAGATGACTCTTGAATTCA 60.127 42.308 3.38 3.38 32.66 2.57
2372 3582 7.244886 TCCTGTAGATGACTCTTGAATTCAA 57.755 36.000 19.45 19.45 32.66 2.69
2387 3597 8.558973 CTTGAATTCAAGTAGATCTGAACCTT 57.441 34.615 31.54 0.00 46.11 3.50
2388 3598 8.553459 TTGAATTCAAGTAGATCTGAACCTTC 57.447 34.615 16.91 4.08 0.00 3.46
2389 3599 7.679783 TGAATTCAAGTAGATCTGAACCTTCA 58.320 34.615 5.45 6.45 35.57 3.02
2397 3607 3.885814 TGAACCTTCAGGCCGAGT 58.114 55.556 0.00 0.00 39.32 4.18
2398 3608 1.671742 TGAACCTTCAGGCCGAGTC 59.328 57.895 0.00 0.00 39.32 3.36
2399 3609 1.079057 GAACCTTCAGGCCGAGTCC 60.079 63.158 0.00 0.00 39.32 3.85
2400 3610 1.536662 AACCTTCAGGCCGAGTCCT 60.537 57.895 0.00 0.00 39.32 3.85
2406 3616 3.947173 AGGCCGAGTCCTGAGATG 58.053 61.111 0.00 0.00 34.56 2.90
2407 3617 2.107953 GGCCGAGTCCTGAGATGC 59.892 66.667 0.00 0.00 0.00 3.91
2408 3618 2.279120 GCCGAGTCCTGAGATGCG 60.279 66.667 0.00 0.00 0.00 4.73
2409 3619 2.279120 CCGAGTCCTGAGATGCGC 60.279 66.667 0.00 0.00 0.00 6.09
2410 3620 2.491621 CGAGTCCTGAGATGCGCA 59.508 61.111 14.96 14.96 0.00 6.09
2411 3621 1.067084 CGAGTCCTGAGATGCGCAT 59.933 57.895 25.66 25.66 0.00 4.73
2412 3622 0.312102 CGAGTCCTGAGATGCGCATA 59.688 55.000 25.40 7.07 0.00 3.14
2413 3623 1.269257 CGAGTCCTGAGATGCGCATAA 60.269 52.381 25.40 11.27 0.00 1.90
2414 3624 2.131183 GAGTCCTGAGATGCGCATAAC 58.869 52.381 25.40 19.78 0.00 1.89
2428 3638 3.854286 GCATAACGATAAGGTTGTCGG 57.146 47.619 12.61 0.00 44.55 4.79
2429 3639 2.542595 GCATAACGATAAGGTTGTCGGG 59.457 50.000 12.61 2.12 44.55 5.14
2430 3640 2.965572 TAACGATAAGGTTGTCGGGG 57.034 50.000 12.61 0.00 44.55 5.73
2431 3641 1.269012 AACGATAAGGTTGTCGGGGA 58.731 50.000 12.61 0.00 44.55 4.81
2432 3642 0.533951 ACGATAAGGTTGTCGGGGAC 59.466 55.000 12.61 0.00 44.55 4.46
2444 3654 4.530857 GGGGACGATCCAGTGGCG 62.531 72.222 3.51 5.91 38.64 5.69
2445 3655 3.458163 GGGACGATCCAGTGGCGA 61.458 66.667 15.07 0.00 38.64 5.54
2446 3656 2.202756 GGACGATCCAGTGGCGAC 60.203 66.667 15.07 9.20 36.28 5.19
2447 3657 2.579787 GACGATCCAGTGGCGACG 60.580 66.667 15.07 15.89 0.00 5.12
2448 3658 4.129737 ACGATCCAGTGGCGACGG 62.130 66.667 15.07 3.93 0.00 4.79
2450 3660 4.451150 GATCCAGTGGCGACGGCA 62.451 66.667 21.29 21.29 42.47 5.69
2451 3661 4.457496 ATCCAGTGGCGACGGCAG 62.457 66.667 25.68 13.89 42.47 4.85
2453 3663 4.680237 CCAGTGGCGACGGCAGAA 62.680 66.667 25.68 0.00 42.47 3.02
2454 3664 3.114616 CAGTGGCGACGGCAGAAG 61.115 66.667 25.68 13.37 42.47 2.85
2455 3665 3.616721 AGTGGCGACGGCAGAAGT 61.617 61.111 25.68 7.01 42.47 3.01
2456 3666 2.260434 GTGGCGACGGCAGAAGTA 59.740 61.111 25.68 0.00 42.47 2.24
2457 3667 1.805945 GTGGCGACGGCAGAAGTAG 60.806 63.158 25.68 0.00 42.47 2.57
2458 3668 2.273179 TGGCGACGGCAGAAGTAGT 61.273 57.895 21.29 0.00 42.47 2.73
2459 3669 1.080025 GGCGACGGCAGAAGTAGTT 60.080 57.895 17.49 0.00 42.47 2.24
2460 3670 1.077089 GGCGACGGCAGAAGTAGTTC 61.077 60.000 17.49 1.75 42.47 3.01
2461 3671 1.077089 GCGACGGCAGAAGTAGTTCC 61.077 60.000 6.68 0.00 39.62 3.62
2462 3672 0.242825 CGACGGCAGAAGTAGTTCCA 59.757 55.000 6.68 0.00 32.48 3.53
2463 3673 1.732732 CGACGGCAGAAGTAGTTCCAG 60.733 57.143 6.68 1.72 32.48 3.86
2464 3674 0.037232 ACGGCAGAAGTAGTTCCAGC 60.037 55.000 14.03 14.03 34.84 4.85
2465 3675 0.037326 CGGCAGAAGTAGTTCCAGCA 60.037 55.000 20.54 0.00 36.44 4.41
2466 3676 1.443802 GGCAGAAGTAGTTCCAGCAC 58.556 55.000 20.54 10.68 36.44 4.40
2467 3677 1.002544 GGCAGAAGTAGTTCCAGCACT 59.997 52.381 20.54 0.00 36.44 4.40
2468 3678 2.072298 GCAGAAGTAGTTCCAGCACTG 58.928 52.381 16.37 5.78 35.39 3.66
2477 3687 2.678934 CCAGCACTGGCCAAGCAT 60.679 61.111 26.33 12.41 44.73 3.79
2478 3688 2.707849 CCAGCACTGGCCAAGCATC 61.708 63.158 26.33 7.21 44.73 3.91
2479 3689 1.974875 CAGCACTGGCCAAGCATCA 60.975 57.895 26.33 0.00 42.56 3.07
2480 3690 1.000019 AGCACTGGCCAAGCATCAT 60.000 52.632 26.33 7.82 42.56 2.45
2481 3691 1.141019 GCACTGGCCAAGCATCATG 59.859 57.895 21.49 4.00 0.00 3.07
2482 3692 1.601419 GCACTGGCCAAGCATCATGT 61.601 55.000 21.49 4.65 0.00 3.21
2483 3693 0.172578 CACTGGCCAAGCATCATGTG 59.827 55.000 7.01 4.84 0.00 3.21
2492 3702 4.961637 CATCATGTGCCCCTCGAA 57.038 55.556 0.00 0.00 0.00 3.71
2493 3703 2.699073 CATCATGTGCCCCTCGAAG 58.301 57.895 0.00 0.00 0.00 3.79
2494 3704 0.107508 CATCATGTGCCCCTCGAAGT 60.108 55.000 0.00 0.00 0.00 3.01
2495 3705 0.620556 ATCATGTGCCCCTCGAAGTT 59.379 50.000 0.00 0.00 0.00 2.66
2496 3706 0.400213 TCATGTGCCCCTCGAAGTTT 59.600 50.000 0.00 0.00 0.00 2.66
2497 3707 1.202879 TCATGTGCCCCTCGAAGTTTT 60.203 47.619 0.00 0.00 0.00 2.43
2498 3708 2.039216 TCATGTGCCCCTCGAAGTTTTA 59.961 45.455 0.00 0.00 0.00 1.52
2499 3709 2.642154 TGTGCCCCTCGAAGTTTTAA 57.358 45.000 0.00 0.00 0.00 1.52
2500 3710 2.933573 TGTGCCCCTCGAAGTTTTAAA 58.066 42.857 0.00 0.00 0.00 1.52
2501 3711 2.619646 TGTGCCCCTCGAAGTTTTAAAC 59.380 45.455 0.00 0.00 0.00 2.01
2502 3712 2.030540 GTGCCCCTCGAAGTTTTAAACC 60.031 50.000 4.01 0.00 0.00 3.27
2503 3713 2.158579 TGCCCCTCGAAGTTTTAAACCT 60.159 45.455 4.01 0.00 0.00 3.50
2504 3714 2.228103 GCCCCTCGAAGTTTTAAACCTG 59.772 50.000 4.01 0.00 0.00 4.00
2505 3715 2.228103 CCCCTCGAAGTTTTAAACCTGC 59.772 50.000 4.01 0.00 0.00 4.85
2506 3716 2.882137 CCCTCGAAGTTTTAAACCTGCA 59.118 45.455 4.01 0.00 0.00 4.41
2507 3717 3.304458 CCCTCGAAGTTTTAAACCTGCAC 60.304 47.826 4.01 0.00 0.00 4.57
2508 3718 3.304458 CCTCGAAGTTTTAAACCTGCACC 60.304 47.826 4.01 0.00 0.00 5.01
2509 3719 2.619646 TCGAAGTTTTAAACCTGCACCC 59.380 45.455 4.01 0.00 0.00 4.61
2510 3720 2.359531 CGAAGTTTTAAACCTGCACCCA 59.640 45.455 4.01 0.00 0.00 4.51
2511 3721 3.550030 CGAAGTTTTAAACCTGCACCCAG 60.550 47.826 4.01 0.00 38.85 4.45
2512 3722 3.306472 AGTTTTAAACCTGCACCCAGA 57.694 42.857 4.01 0.00 41.77 3.86
2513 3723 3.637769 AGTTTTAAACCTGCACCCAGAA 58.362 40.909 4.01 0.00 41.77 3.02
2514 3724 3.383505 AGTTTTAAACCTGCACCCAGAAC 59.616 43.478 4.01 0.00 41.77 3.01
2515 3725 2.738587 TTAAACCTGCACCCAGAACA 57.261 45.000 0.00 0.00 41.77 3.18
2516 3726 1.975660 TAAACCTGCACCCAGAACAC 58.024 50.000 0.00 0.00 41.77 3.32
2517 3727 0.033601 AAACCTGCACCCAGAACACA 60.034 50.000 0.00 0.00 41.77 3.72
2518 3728 0.751643 AACCTGCACCCAGAACACAC 60.752 55.000 0.00 0.00 41.77 3.82
2519 3729 1.152984 CCTGCACCCAGAACACACA 60.153 57.895 0.00 0.00 41.77 3.72
2520 3730 0.538057 CCTGCACCCAGAACACACAT 60.538 55.000 0.00 0.00 41.77 3.21
2521 3731 1.321474 CTGCACCCAGAACACACATT 58.679 50.000 0.00 0.00 41.77 2.71
2522 3732 1.001048 CTGCACCCAGAACACACATTG 60.001 52.381 0.00 0.00 41.77 2.82
2523 3733 0.318955 GCACCCAGAACACACATTGC 60.319 55.000 0.00 0.00 0.00 3.56
2524 3734 1.321474 CACCCAGAACACACATTGCT 58.679 50.000 0.00 0.00 0.00 3.91
2525 3735 1.682854 CACCCAGAACACACATTGCTT 59.317 47.619 0.00 0.00 0.00 3.91
2526 3736 1.682854 ACCCAGAACACACATTGCTTG 59.317 47.619 0.00 0.00 0.00 4.01
2527 3737 1.682854 CCCAGAACACACATTGCTTGT 59.317 47.619 0.00 0.00 39.91 3.16
2528 3738 2.101249 CCCAGAACACACATTGCTTGTT 59.899 45.455 3.73 3.73 36.00 2.83
2529 3739 3.374745 CCAGAACACACATTGCTTGTTC 58.625 45.455 17.35 17.35 46.31 3.18
2531 3741 1.780860 GAACACACATTGCTTGTTCGC 59.219 47.619 12.64 0.00 39.69 4.70
2532 3742 0.030638 ACACACATTGCTTGTTCGCC 59.969 50.000 0.00 0.00 36.00 5.54
2533 3743 0.998226 CACACATTGCTTGTTCGCCG 60.998 55.000 0.00 0.00 36.00 6.46
2534 3744 1.163420 ACACATTGCTTGTTCGCCGA 61.163 50.000 0.00 0.00 36.00 5.54
2535 3745 0.725784 CACATTGCTTGTTCGCCGAC 60.726 55.000 0.00 0.00 36.00 4.79
2536 3746 1.163420 ACATTGCTTGTTCGCCGACA 61.163 50.000 0.00 0.00 33.74 4.35
2537 3747 0.453282 CATTGCTTGTTCGCCGACAG 60.453 55.000 0.00 0.00 0.00 3.51
2538 3748 2.187599 ATTGCTTGTTCGCCGACAGC 62.188 55.000 5.40 5.40 38.52 4.40
2539 3749 4.090057 GCTTGTTCGCCGACAGCC 62.090 66.667 1.55 0.00 38.78 4.85
2540 3750 2.357517 CTTGTTCGCCGACAGCCT 60.358 61.111 0.00 0.00 38.78 4.58
2541 3751 1.080093 CTTGTTCGCCGACAGCCTA 60.080 57.895 0.00 0.00 38.78 3.93
2542 3752 0.669318 CTTGTTCGCCGACAGCCTAA 60.669 55.000 0.00 0.00 38.78 2.69
2543 3753 0.947180 TTGTTCGCCGACAGCCTAAC 60.947 55.000 0.00 0.00 38.78 2.34
2544 3754 2.098831 GTTCGCCGACAGCCTAACC 61.099 63.158 0.00 0.00 38.78 2.85
2545 3755 2.575893 TTCGCCGACAGCCTAACCA 61.576 57.895 0.00 0.00 38.78 3.67
2546 3756 2.775032 TTCGCCGACAGCCTAACCAC 62.775 60.000 0.00 0.00 38.78 4.16
2547 3757 2.813908 GCCGACAGCCTAACCACG 60.814 66.667 0.00 0.00 34.35 4.94
2548 3758 2.813908 CCGACAGCCTAACCACGC 60.814 66.667 0.00 0.00 0.00 5.34
2549 3759 3.179265 CGACAGCCTAACCACGCG 61.179 66.667 3.53 3.53 0.00 6.01
2550 3760 3.488090 GACAGCCTAACCACGCGC 61.488 66.667 5.73 0.00 0.00 6.86
2569 3779 2.245159 CGGGAGCTGCTTAATGATCA 57.755 50.000 2.53 0.00 0.00 2.92
2570 3780 2.141517 CGGGAGCTGCTTAATGATCAG 58.858 52.381 2.53 0.00 0.00 2.90
2575 3785 1.607628 GCTGCTTAATGATCAGCCAGG 59.392 52.381 0.09 0.00 45.34 4.45
2576 3786 2.928334 CTGCTTAATGATCAGCCAGGT 58.072 47.619 0.09 0.00 34.91 4.00
2577 3787 2.617308 CTGCTTAATGATCAGCCAGGTG 59.383 50.000 0.09 0.00 34.91 4.00
2578 3788 2.239402 TGCTTAATGATCAGCCAGGTGA 59.761 45.455 0.09 1.48 34.91 4.02
2579 3789 3.282021 GCTTAATGATCAGCCAGGTGAA 58.718 45.455 0.09 0.00 0.00 3.18
2580 3790 3.696051 GCTTAATGATCAGCCAGGTGAAA 59.304 43.478 0.09 0.00 0.00 2.69
2581 3791 4.340381 GCTTAATGATCAGCCAGGTGAAAT 59.660 41.667 0.09 0.00 0.00 2.17
2582 3792 5.163478 GCTTAATGATCAGCCAGGTGAAATT 60.163 40.000 0.09 9.32 0.00 1.82
2583 3793 4.730949 AATGATCAGCCAGGTGAAATTG 57.269 40.909 0.09 0.00 0.00 2.32
2584 3794 3.159213 TGATCAGCCAGGTGAAATTGT 57.841 42.857 3.33 0.00 0.00 2.71
2585 3795 2.821378 TGATCAGCCAGGTGAAATTGTG 59.179 45.455 3.33 0.00 0.00 3.33
2586 3796 2.655090 TCAGCCAGGTGAAATTGTGA 57.345 45.000 0.00 0.00 0.00 3.58
2587 3797 2.507484 TCAGCCAGGTGAAATTGTGAG 58.493 47.619 0.00 0.00 0.00 3.51
2588 3798 1.542915 CAGCCAGGTGAAATTGTGAGG 59.457 52.381 0.00 0.00 0.00 3.86
2589 3799 0.890683 GCCAGGTGAAATTGTGAGGG 59.109 55.000 0.00 0.00 0.00 4.30
2590 3800 1.547675 GCCAGGTGAAATTGTGAGGGA 60.548 52.381 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.609208 ACACAAGAAGCACACATCCC 58.391 50.000 0.00 0.00 0.00 3.85
77 78 6.471841 TGTTGACTCAAAATGAAACATCAACG 59.528 34.615 8.69 0.00 44.80 4.10
154 155 7.566569 TGATGTATTTGGGAGAAACCGTATTA 58.433 34.615 0.00 0.00 40.11 0.98
190 191 1.481871 TTAACGGGGGCAACAAACAA 58.518 45.000 0.00 0.00 39.74 2.83
191 192 1.136500 GTTTAACGGGGGCAACAAACA 59.864 47.619 0.00 0.00 39.74 2.83
201 202 5.466393 CGTATAAATGGTAGGTTTAACGGGG 59.534 44.000 0.00 0.00 30.79 5.73
312 313 4.968259 TCATATAAGCTTTGTACGCCCAT 58.032 39.130 3.20 0.00 0.00 4.00
481 483 3.559171 GGTGTGGCTAGATCCAACTCAAA 60.559 47.826 0.00 0.00 37.96 2.69
576 578 3.242936 GCAACTGTAAGCAGAACGGAAAA 60.243 43.478 1.30 0.00 45.28 2.29
578 580 1.871039 GCAACTGTAAGCAGAACGGAA 59.129 47.619 1.30 0.00 45.28 4.30
594 596 1.296867 CCGCGTGATCGATTGCAAC 60.297 57.895 0.00 0.00 39.71 4.17
730 1794 2.033448 CAGGTGCGCCTTGGGTTA 59.967 61.111 18.42 0.00 44.18 2.85
1243 2333 6.934645 TGAAAGACTGGAACATACTACCAAAG 59.065 38.462 0.00 0.00 38.20 2.77
1247 2337 6.282199 TCTGAAAGACTGGAACATACTACC 57.718 41.667 0.00 0.00 38.67 3.18
1262 2352 4.573607 GCAGATGCACATATGTCTGAAAGA 59.426 41.667 20.69 0.00 40.30 2.52
1263 2353 4.575236 AGCAGATGCACATATGTCTGAAAG 59.425 41.667 20.69 5.57 45.16 2.62
1290 2403 0.318360 TACACACAACAGCGACGGAG 60.318 55.000 0.00 0.00 0.00 4.63
1369 2483 4.058721 GGAGCTTCTCCTTGATCTTCTC 57.941 50.000 5.65 0.00 46.41 2.87
1392 2506 1.507141 GACTGTCTTTGTGGCCACCG 61.507 60.000 32.62 20.28 0.00 4.94
1409 2523 3.807538 CGGCCATGTGCTGCTGAC 61.808 66.667 2.24 0.00 40.07 3.51
1480 2594 3.534056 CCCGTAATCTCCGCCGGT 61.534 66.667 1.63 0.00 38.79 5.28
1491 2605 3.960136 TGCCCTTGCTGCCCGTAA 61.960 61.111 0.00 0.00 38.71 3.18
1621 2735 3.449377 AGCTTAACTCAAGAGGGCTAGTC 59.551 47.826 1.73 0.00 36.22 2.59
1627 2741 3.006247 GCTCAAGCTTAACTCAAGAGGG 58.994 50.000 0.00 0.00 36.22 4.30
1644 2766 5.363101 CAGGCATCTTATTTACTCAGCTCA 58.637 41.667 0.00 0.00 0.00 4.26
1658 2780 4.520492 CCCTTAAATATTCGCAGGCATCTT 59.480 41.667 0.00 0.00 0.00 2.40
1659 2781 4.074970 CCCTTAAATATTCGCAGGCATCT 58.925 43.478 0.00 0.00 0.00 2.90
1660 2782 3.821033 ACCCTTAAATATTCGCAGGCATC 59.179 43.478 0.00 0.00 0.00 3.91
1661 2783 3.569701 CACCCTTAAATATTCGCAGGCAT 59.430 43.478 0.00 0.00 0.00 4.40
1662 2784 2.948979 CACCCTTAAATATTCGCAGGCA 59.051 45.455 0.00 0.00 0.00 4.75
1663 2785 2.949644 ACACCCTTAAATATTCGCAGGC 59.050 45.455 0.00 0.00 0.00 4.85
1664 2786 3.945285 ACACACCCTTAAATATTCGCAGG 59.055 43.478 0.00 0.00 0.00 4.85
1665 2787 5.560966 AACACACCCTTAAATATTCGCAG 57.439 39.130 0.00 0.00 0.00 5.18
1666 2788 5.336055 CCAAACACACCCTTAAATATTCGCA 60.336 40.000 0.00 0.00 0.00 5.10
1667 2789 5.099575 CCAAACACACCCTTAAATATTCGC 58.900 41.667 0.00 0.00 0.00 4.70
1668 2790 6.262193 ACCAAACACACCCTTAAATATTCG 57.738 37.500 0.00 0.00 0.00 3.34
1669 2791 6.367695 GCAACCAAACACACCCTTAAATATTC 59.632 38.462 0.00 0.00 0.00 1.75
1670 2792 6.183361 TGCAACCAAACACACCCTTAAATATT 60.183 34.615 0.00 0.00 0.00 1.28
1671 2793 5.305644 TGCAACCAAACACACCCTTAAATAT 59.694 36.000 0.00 0.00 0.00 1.28
1672 2794 4.649674 TGCAACCAAACACACCCTTAAATA 59.350 37.500 0.00 0.00 0.00 1.40
1673 2795 3.452627 TGCAACCAAACACACCCTTAAAT 59.547 39.130 0.00 0.00 0.00 1.40
1674 2796 2.832129 TGCAACCAAACACACCCTTAAA 59.168 40.909 0.00 0.00 0.00 1.52
1675 2797 2.428890 CTGCAACCAAACACACCCTTAA 59.571 45.455 0.00 0.00 0.00 1.85
1676 2798 2.028130 CTGCAACCAAACACACCCTTA 58.972 47.619 0.00 0.00 0.00 2.69
1730 2855 4.735873 GCTGCATTTAAAGAATCAGGCTCC 60.736 45.833 0.00 0.00 0.00 4.70
1731 2856 4.357996 GCTGCATTTAAAGAATCAGGCTC 58.642 43.478 0.00 0.00 0.00 4.70
1774 2899 0.680921 GCAGGCAGGCAACCTATTGA 60.681 55.000 0.00 0.00 38.15 2.57
1776 2901 1.383799 TGCAGGCAGGCAACCTATT 59.616 52.632 1.11 0.00 41.65 1.73
1777 2902 3.089838 TGCAGGCAGGCAACCTAT 58.910 55.556 1.11 0.00 41.65 2.57
1785 2910 0.949588 CTCTATGCGATGCAGGCAGG 60.950 60.000 18.51 13.88 43.65 4.85
1786 2911 0.949588 CCTCTATGCGATGCAGGCAG 60.950 60.000 18.51 8.06 43.65 4.85
1809 2935 3.380954 GGAAACCAAACACGAAGGGTAAA 59.619 43.478 0.00 0.00 32.21 2.01
1816 2944 3.572604 AAAACGGAAACCAAACACGAA 57.427 38.095 0.00 0.00 0.00 3.85
1819 2947 3.423776 GCACAAAAACGGAAACCAAACAC 60.424 43.478 0.00 0.00 0.00 3.32
1829 2959 4.576873 TCACATTCTAAGCACAAAAACGGA 59.423 37.500 0.00 0.00 0.00 4.69
1847 2978 2.105006 AAGTTCGCATCTGCTCACAT 57.895 45.000 0.09 0.00 39.32 3.21
1876 3011 5.631026 AGCAGAACATAAATACTGTTTGCG 58.369 37.500 0.00 0.00 40.90 4.85
1904 3041 4.649218 GGTAAGGCCACCACATTTGAATAT 59.351 41.667 5.01 0.00 38.55 1.28
1939 3080 1.062440 GCTTTGTTTTGCTGTTGTGCC 59.938 47.619 0.00 0.00 0.00 5.01
2042 3239 0.838608 TTTTGGTCAGGGTACGTGGT 59.161 50.000 0.00 0.00 45.22 4.16
2050 3247 5.982890 ACTTGTTCATATTTTGGTCAGGG 57.017 39.130 0.00 0.00 0.00 4.45
2055 3262 6.719370 TGCTAGGAACTTGTTCATATTTTGGT 59.281 34.615 14.38 0.00 41.75 3.67
2076 3283 4.097437 CGAGACTTATGGGTACTTGTGCTA 59.903 45.833 0.00 0.00 0.00 3.49
2197 3407 3.306088 CCACGACTCCTCAGTTATGTGTT 60.306 47.826 0.00 0.00 32.64 3.32
2204 3414 1.068741 GACAACCACGACTCCTCAGTT 59.931 52.381 0.00 0.00 30.63 3.16
2207 3417 1.410004 AAGACAACCACGACTCCTCA 58.590 50.000 0.00 0.00 0.00 3.86
2231 3441 9.729023 CCAATATCATATTGACTATCTCTCGTC 57.271 37.037 17.68 0.00 0.00 4.20
2232 3442 8.194104 GCCAATATCATATTGACTATCTCTCGT 58.806 37.037 17.68 0.00 0.00 4.18
2233 3443 7.378194 CGCCAATATCATATTGACTATCTCTCG 59.622 40.741 17.68 0.00 0.00 4.04
2234 3444 8.194104 ACGCCAATATCATATTGACTATCTCTC 58.806 37.037 17.68 0.00 0.00 3.20
2235 3445 7.978414 CACGCCAATATCATATTGACTATCTCT 59.022 37.037 17.68 0.00 0.00 3.10
2236 3446 7.223582 CCACGCCAATATCATATTGACTATCTC 59.776 40.741 17.68 0.00 0.00 2.75
2237 3447 7.044181 CCACGCCAATATCATATTGACTATCT 58.956 38.462 17.68 0.00 0.00 1.98
2238 3448 6.818644 ACCACGCCAATATCATATTGACTATC 59.181 38.462 17.68 2.44 0.00 2.08
2239 3449 6.711277 ACCACGCCAATATCATATTGACTAT 58.289 36.000 17.68 0.00 0.00 2.12
2240 3450 6.109156 ACCACGCCAATATCATATTGACTA 57.891 37.500 17.68 0.00 0.00 2.59
2241 3451 4.973168 ACCACGCCAATATCATATTGACT 58.027 39.130 17.68 0.00 0.00 3.41
2242 3452 5.470098 AGAACCACGCCAATATCATATTGAC 59.530 40.000 17.68 6.31 0.00 3.18
2243 3453 5.620206 AGAACCACGCCAATATCATATTGA 58.380 37.500 17.68 0.00 0.00 2.57
2244 3454 5.947228 AGAACCACGCCAATATCATATTG 57.053 39.130 10.12 10.12 0.00 1.90
2245 3455 5.938125 GGTAGAACCACGCCAATATCATATT 59.062 40.000 0.00 0.00 38.42 1.28
2246 3456 5.012664 TGGTAGAACCACGCCAATATCATAT 59.987 40.000 0.00 0.00 44.79 1.78
2247 3457 4.345547 TGGTAGAACCACGCCAATATCATA 59.654 41.667 0.00 0.00 44.79 2.15
2248 3458 3.135712 TGGTAGAACCACGCCAATATCAT 59.864 43.478 0.00 0.00 44.79 2.45
2249 3459 2.502130 TGGTAGAACCACGCCAATATCA 59.498 45.455 0.00 0.00 44.79 2.15
2250 3460 3.188159 TGGTAGAACCACGCCAATATC 57.812 47.619 0.00 0.00 44.79 1.63
2261 3471 5.987953 ACTTCTTCGTTTAGTTGGTAGAACC 59.012 40.000 0.00 0.00 39.22 3.62
2262 3472 7.474398 AACTTCTTCGTTTAGTTGGTAGAAC 57.526 36.000 0.00 0.00 31.31 3.01
2263 3473 8.496707 AAAACTTCTTCGTTTAGTTGGTAGAA 57.503 30.769 0.00 0.00 36.16 2.10
2264 3474 8.392612 CAAAAACTTCTTCGTTTAGTTGGTAGA 58.607 33.333 0.00 0.00 36.16 2.59
2265 3475 8.392612 TCAAAAACTTCTTCGTTTAGTTGGTAG 58.607 33.333 0.00 0.00 36.16 3.18
2266 3476 8.266392 TCAAAAACTTCTTCGTTTAGTTGGTA 57.734 30.769 0.00 0.00 36.16 3.25
2267 3477 7.148355 TCAAAAACTTCTTCGTTTAGTTGGT 57.852 32.000 0.00 0.00 36.16 3.67
2268 3478 8.531530 CAATCAAAAACTTCTTCGTTTAGTTGG 58.468 33.333 0.00 0.00 36.16 3.77
2269 3479 8.531530 CCAATCAAAAACTTCTTCGTTTAGTTG 58.468 33.333 0.00 0.00 36.16 3.16
2270 3480 8.463607 TCCAATCAAAAACTTCTTCGTTTAGTT 58.536 29.630 0.00 0.00 36.16 2.24
2271 3481 7.992008 TCCAATCAAAAACTTCTTCGTTTAGT 58.008 30.769 0.00 0.00 36.16 2.24
2274 3484 9.810545 TTTATCCAATCAAAAACTTCTTCGTTT 57.189 25.926 0.00 0.00 38.66 3.60
2275 3485 9.244799 GTTTATCCAATCAAAAACTTCTTCGTT 57.755 29.630 0.00 0.00 0.00 3.85
2276 3486 8.410141 TGTTTATCCAATCAAAAACTTCTTCGT 58.590 29.630 0.00 0.00 33.89 3.85
2277 3487 8.795786 TGTTTATCCAATCAAAAACTTCTTCG 57.204 30.769 0.00 0.00 33.89 3.79
2278 3488 8.703336 GCTGTTTATCCAATCAAAAACTTCTTC 58.297 33.333 0.00 0.00 33.89 2.87
2279 3489 7.382218 CGCTGTTTATCCAATCAAAAACTTCTT 59.618 33.333 0.00 0.00 33.89 2.52
2280 3490 6.863126 CGCTGTTTATCCAATCAAAAACTTCT 59.137 34.615 0.00 0.00 33.89 2.85
2281 3491 6.640907 ACGCTGTTTATCCAATCAAAAACTTC 59.359 34.615 0.00 0.00 33.89 3.01
2282 3492 6.512297 ACGCTGTTTATCCAATCAAAAACTT 58.488 32.000 0.00 0.00 33.89 2.66
2283 3493 6.084326 ACGCTGTTTATCCAATCAAAAACT 57.916 33.333 0.00 0.00 33.89 2.66
2284 3494 9.562583 TTATACGCTGTTTATCCAATCAAAAAC 57.437 29.630 0.00 0.00 33.46 2.43
2286 3496 9.729023 CATTATACGCTGTTTATCCAATCAAAA 57.271 29.630 0.00 0.00 0.00 2.44
2287 3497 9.114952 TCATTATACGCTGTTTATCCAATCAAA 57.885 29.630 0.00 0.00 0.00 2.69
2288 3498 8.669946 TCATTATACGCTGTTTATCCAATCAA 57.330 30.769 0.00 0.00 0.00 2.57
2289 3499 8.846943 ATCATTATACGCTGTTTATCCAATCA 57.153 30.769 0.00 0.00 0.00 2.57
2292 3502 9.990360 TCTTATCATTATACGCTGTTTATCCAA 57.010 29.630 0.00 0.00 0.00 3.53
2293 3503 9.419297 GTCTTATCATTATACGCTGTTTATCCA 57.581 33.333 0.00 0.00 0.00 3.41
2294 3504 8.584600 CGTCTTATCATTATACGCTGTTTATCC 58.415 37.037 0.00 0.00 0.00 2.59
2304 3514 6.032565 CCGAAGAAGCGTCTTATCATTATACG 59.967 42.308 15.11 10.42 44.42 3.06
2305 3515 6.183359 GCCGAAGAAGCGTCTTATCATTATAC 60.183 42.308 15.11 0.00 44.42 1.47
2306 3516 5.862323 GCCGAAGAAGCGTCTTATCATTATA 59.138 40.000 15.11 0.00 44.42 0.98
2307 3517 4.686554 GCCGAAGAAGCGTCTTATCATTAT 59.313 41.667 15.11 0.00 44.42 1.28
2308 3518 4.049186 GCCGAAGAAGCGTCTTATCATTA 58.951 43.478 15.11 0.00 44.42 1.90
2309 3519 2.866762 GCCGAAGAAGCGTCTTATCATT 59.133 45.455 15.11 0.00 44.42 2.57
2310 3520 2.159099 TGCCGAAGAAGCGTCTTATCAT 60.159 45.455 15.11 0.00 44.42 2.45
2311 3521 1.203758 TGCCGAAGAAGCGTCTTATCA 59.796 47.619 15.11 10.08 44.42 2.15
2312 3522 1.588861 GTGCCGAAGAAGCGTCTTATC 59.411 52.381 15.11 3.14 44.42 1.75
2313 3523 1.067142 TGTGCCGAAGAAGCGTCTTAT 60.067 47.619 15.11 0.00 44.42 1.73
2314 3524 0.315886 TGTGCCGAAGAAGCGTCTTA 59.684 50.000 15.11 0.00 44.42 2.10
2316 3526 1.664965 GTGTGCCGAAGAAGCGTCT 60.665 57.895 0.00 0.00 34.72 4.18
2317 3527 1.291877 ATGTGTGCCGAAGAAGCGTC 61.292 55.000 0.00 0.00 0.00 5.19
2318 3528 1.301716 ATGTGTGCCGAAGAAGCGT 60.302 52.632 0.00 0.00 0.00 5.07
2319 3529 1.133253 CATGTGTGCCGAAGAAGCG 59.867 57.895 0.00 0.00 0.00 4.68
2320 3530 0.955428 TCCATGTGTGCCGAAGAAGC 60.955 55.000 0.00 0.00 0.00 3.86
2321 3531 1.466167 CTTCCATGTGTGCCGAAGAAG 59.534 52.381 2.07 0.00 34.87 2.85
2322 3532 1.522668 CTTCCATGTGTGCCGAAGAA 58.477 50.000 2.07 0.00 34.87 2.52
2323 3533 0.955428 GCTTCCATGTGTGCCGAAGA 60.955 55.000 10.27 0.00 34.87 2.87
2324 3534 1.236616 TGCTTCCATGTGTGCCGAAG 61.237 55.000 3.56 3.56 35.81 3.79
2325 3535 0.608856 ATGCTTCCATGTGTGCCGAA 60.609 50.000 0.00 0.00 0.00 4.30
2326 3536 0.251634 TATGCTTCCATGTGTGCCGA 59.748 50.000 0.00 0.00 32.85 5.54
2327 3537 0.378257 GTATGCTTCCATGTGTGCCG 59.622 55.000 0.00 0.00 32.85 5.69
2328 3538 0.740737 GGTATGCTTCCATGTGTGCC 59.259 55.000 0.00 0.00 32.85 5.01
2329 3539 1.672881 GAGGTATGCTTCCATGTGTGC 59.327 52.381 0.00 0.00 32.85 4.57
2330 3540 2.092753 AGGAGGTATGCTTCCATGTGTG 60.093 50.000 14.35 0.00 42.72 3.82
2331 3541 2.092753 CAGGAGGTATGCTTCCATGTGT 60.093 50.000 14.35 0.00 42.72 3.72
2332 3542 2.092753 ACAGGAGGTATGCTTCCATGTG 60.093 50.000 14.35 6.45 42.72 3.21
2333 3543 2.200081 ACAGGAGGTATGCTTCCATGT 58.800 47.619 14.35 11.70 42.72 3.21
2334 3544 3.643320 TCTACAGGAGGTATGCTTCCATG 59.357 47.826 14.35 11.14 42.72 3.66
2335 3545 3.928754 TCTACAGGAGGTATGCTTCCAT 58.071 45.455 14.35 4.57 42.72 3.41
2336 3546 3.398318 TCTACAGGAGGTATGCTTCCA 57.602 47.619 14.35 0.00 42.72 3.53
2337 3547 3.898123 TCATCTACAGGAGGTATGCTTCC 59.102 47.826 3.58 3.58 40.80 3.46
2338 3548 4.586841 AGTCATCTACAGGAGGTATGCTTC 59.413 45.833 0.00 0.00 0.00 3.86
2339 3549 4.551671 AGTCATCTACAGGAGGTATGCTT 58.448 43.478 0.00 0.00 0.00 3.91
2340 3550 4.141041 AGAGTCATCTACAGGAGGTATGCT 60.141 45.833 0.00 0.00 32.54 3.79
2341 3551 4.148838 AGAGTCATCTACAGGAGGTATGC 58.851 47.826 0.00 0.00 32.54 3.14
2342 3552 5.830457 TCAAGAGTCATCTACAGGAGGTATG 59.170 44.000 0.00 0.00 33.45 2.39
2343 3553 6.019656 TCAAGAGTCATCTACAGGAGGTAT 57.980 41.667 0.00 0.00 33.45 2.73
2344 3554 5.452341 TCAAGAGTCATCTACAGGAGGTA 57.548 43.478 0.00 0.00 33.45 3.08
2345 3555 4.323569 TCAAGAGTCATCTACAGGAGGT 57.676 45.455 0.00 0.00 33.45 3.85
2346 3556 5.867903 ATTCAAGAGTCATCTACAGGAGG 57.132 43.478 0.00 0.00 33.45 4.30
2347 3557 6.871844 TGAATTCAAGAGTCATCTACAGGAG 58.128 40.000 5.45 0.00 33.45 3.69
2348 3558 6.857437 TGAATTCAAGAGTCATCTACAGGA 57.143 37.500 5.45 0.00 33.45 3.86
2363 3573 8.156820 TGAAGGTTCAGATCTACTTGAATTCAA 58.843 33.333 19.45 19.45 32.50 2.69
2364 3574 7.679783 TGAAGGTTCAGATCTACTTGAATTCA 58.320 34.615 3.38 3.38 32.50 2.57
2380 3590 1.671742 GACTCGGCCTGAAGGTTCA 59.328 57.895 0.00 0.00 37.57 3.18
2381 3591 1.079057 GGACTCGGCCTGAAGGTTC 60.079 63.158 0.00 0.00 37.57 3.62
2382 3592 1.536662 AGGACTCGGCCTGAAGGTT 60.537 57.895 0.00 0.00 36.76 3.50
2383 3593 2.120718 AGGACTCGGCCTGAAGGT 59.879 61.111 0.00 0.00 36.76 3.50
2389 3599 2.430610 GCATCTCAGGACTCGGCCT 61.431 63.158 0.00 0.00 39.37 5.19
2390 3600 2.107953 GCATCTCAGGACTCGGCC 59.892 66.667 0.00 0.00 0.00 6.13
2391 3601 2.279120 CGCATCTCAGGACTCGGC 60.279 66.667 0.00 0.00 0.00 5.54
2392 3602 2.279120 GCGCATCTCAGGACTCGG 60.279 66.667 0.30 0.00 0.00 4.63
2393 3603 0.312102 TATGCGCATCTCAGGACTCG 59.688 55.000 29.11 0.00 0.00 4.18
2394 3604 2.131183 GTTATGCGCATCTCAGGACTC 58.869 52.381 29.11 4.24 0.00 3.36
2395 3605 1.536922 CGTTATGCGCATCTCAGGACT 60.537 52.381 29.11 2.18 0.00 3.85
2396 3606 0.855349 CGTTATGCGCATCTCAGGAC 59.145 55.000 29.11 15.01 0.00 3.85
2397 3607 0.744281 TCGTTATGCGCATCTCAGGA 59.256 50.000 29.11 19.01 41.07 3.86
2398 3608 1.788258 ATCGTTATGCGCATCTCAGG 58.212 50.000 29.11 17.05 41.07 3.86
2399 3609 3.366121 CCTTATCGTTATGCGCATCTCAG 59.634 47.826 29.11 16.60 41.07 3.35
2400 3610 3.243737 ACCTTATCGTTATGCGCATCTCA 60.244 43.478 29.11 6.72 41.07 3.27
2401 3611 3.318017 ACCTTATCGTTATGCGCATCTC 58.682 45.455 29.11 19.21 41.07 2.75
2402 3612 3.386768 ACCTTATCGTTATGCGCATCT 57.613 42.857 29.11 7.63 41.07 2.90
2403 3613 3.247648 ACAACCTTATCGTTATGCGCATC 59.752 43.478 29.11 12.97 41.07 3.91
2404 3614 3.202906 ACAACCTTATCGTTATGCGCAT 58.797 40.909 28.23 28.23 41.07 4.73
2405 3615 2.605818 GACAACCTTATCGTTATGCGCA 59.394 45.455 14.96 14.96 41.07 6.09
2406 3616 2.347292 CGACAACCTTATCGTTATGCGC 60.347 50.000 0.00 0.00 41.07 6.09
2407 3617 2.217847 CCGACAACCTTATCGTTATGCG 59.782 50.000 0.00 0.00 43.01 4.73
2408 3618 2.542595 CCCGACAACCTTATCGTTATGC 59.457 50.000 0.00 0.00 36.60 3.14
2409 3619 3.128349 CCCCGACAACCTTATCGTTATG 58.872 50.000 0.00 0.00 36.60 1.90
2410 3620 3.033184 TCCCCGACAACCTTATCGTTAT 58.967 45.455 0.00 0.00 36.60 1.89
2411 3621 2.166254 GTCCCCGACAACCTTATCGTTA 59.834 50.000 0.00 0.00 36.60 3.18
2412 3622 1.066645 GTCCCCGACAACCTTATCGTT 60.067 52.381 0.00 0.00 36.60 3.85
2413 3623 0.533951 GTCCCCGACAACCTTATCGT 59.466 55.000 0.00 0.00 36.60 3.73
2414 3624 0.526954 CGTCCCCGACAACCTTATCG 60.527 60.000 0.00 0.00 38.08 2.92
2415 3625 0.819582 TCGTCCCCGACAACCTTATC 59.180 55.000 0.00 0.00 38.40 1.75
2416 3626 2.980541 TCGTCCCCGACAACCTTAT 58.019 52.632 0.00 0.00 38.40 1.73
2417 3627 4.517663 TCGTCCCCGACAACCTTA 57.482 55.556 0.00 0.00 38.40 2.69
2426 3636 4.530857 GCCACTGGATCGTCCCCG 62.531 72.222 0.00 0.00 35.03 5.73
2427 3637 4.530857 CGCCACTGGATCGTCCCC 62.531 72.222 0.00 0.00 35.03 4.81
2428 3638 3.458163 TCGCCACTGGATCGTCCC 61.458 66.667 0.00 0.00 35.03 4.46
2429 3639 2.202756 GTCGCCACTGGATCGTCC 60.203 66.667 0.00 0.00 36.96 4.79
2430 3640 2.579787 CGTCGCCACTGGATCGTC 60.580 66.667 0.00 0.00 0.00 4.20
2431 3641 4.129737 CCGTCGCCACTGGATCGT 62.130 66.667 0.00 0.00 0.00 3.73
2433 3643 4.451150 TGCCGTCGCCACTGGATC 62.451 66.667 0.00 0.00 0.00 3.36
2434 3644 4.457496 CTGCCGTCGCCACTGGAT 62.457 66.667 0.00 0.00 0.00 3.41
2436 3646 4.680237 TTCTGCCGTCGCCACTGG 62.680 66.667 0.00 0.00 0.00 4.00
2437 3647 2.486636 TACTTCTGCCGTCGCCACTG 62.487 60.000 0.00 0.00 0.00 3.66
2438 3648 2.214181 CTACTTCTGCCGTCGCCACT 62.214 60.000 0.00 0.00 0.00 4.00
2439 3649 1.805945 CTACTTCTGCCGTCGCCAC 60.806 63.158 0.00 0.00 0.00 5.01
2440 3650 1.812686 AACTACTTCTGCCGTCGCCA 61.813 55.000 0.00 0.00 0.00 5.69
2441 3651 1.077089 GAACTACTTCTGCCGTCGCC 61.077 60.000 0.00 0.00 0.00 5.54
2442 3652 1.077089 GGAACTACTTCTGCCGTCGC 61.077 60.000 0.00 0.00 0.00 5.19
2443 3653 0.242825 TGGAACTACTTCTGCCGTCG 59.757 55.000 0.00 0.00 0.00 5.12
2444 3654 1.997669 CTGGAACTACTTCTGCCGTC 58.002 55.000 0.00 0.00 0.00 4.79
2445 3655 0.037232 GCTGGAACTACTTCTGCCGT 60.037 55.000 0.00 0.00 0.00 5.68
2446 3656 0.037326 TGCTGGAACTACTTCTGCCG 60.037 55.000 0.00 0.00 0.00 5.69
2447 3657 1.002544 AGTGCTGGAACTACTTCTGCC 59.997 52.381 0.00 0.00 0.00 4.85
2448 3658 2.072298 CAGTGCTGGAACTACTTCTGC 58.928 52.381 0.00 0.00 0.00 4.26
2461 3671 1.320344 ATGATGCTTGGCCAGTGCTG 61.320 55.000 26.01 9.92 37.74 4.41
2462 3672 1.000019 ATGATGCTTGGCCAGTGCT 60.000 52.632 26.01 15.55 37.74 4.40
2463 3673 1.141019 CATGATGCTTGGCCAGTGC 59.859 57.895 21.38 21.38 0.00 4.40
2464 3674 0.172578 CACATGATGCTTGGCCAGTG 59.827 55.000 5.11 4.09 0.00 3.66
2465 3675 2.575108 CACATGATGCTTGGCCAGT 58.425 52.632 5.11 0.00 0.00 4.00
2475 3685 0.107508 ACTTCGAGGGGCACATGATG 60.108 55.000 0.00 0.00 0.00 3.07
2476 3686 0.620556 AACTTCGAGGGGCACATGAT 59.379 50.000 0.00 0.00 0.00 2.45
2477 3687 0.400213 AAACTTCGAGGGGCACATGA 59.600 50.000 0.00 0.00 0.00 3.07
2478 3688 1.247567 AAAACTTCGAGGGGCACATG 58.752 50.000 0.00 0.00 0.00 3.21
2479 3689 2.871096 TAAAACTTCGAGGGGCACAT 57.129 45.000 0.00 0.00 0.00 3.21
2480 3690 2.619646 GTTTAAAACTTCGAGGGGCACA 59.380 45.455 0.00 0.00 0.00 4.57
2481 3691 2.030540 GGTTTAAAACTTCGAGGGGCAC 60.031 50.000 0.00 0.00 0.00 5.01
2482 3692 2.158579 AGGTTTAAAACTTCGAGGGGCA 60.159 45.455 0.00 0.00 0.00 5.36
2483 3693 2.228103 CAGGTTTAAAACTTCGAGGGGC 59.772 50.000 2.08 0.00 0.00 5.80
2484 3694 2.228103 GCAGGTTTAAAACTTCGAGGGG 59.772 50.000 2.08 0.00 0.00 4.79
2485 3695 2.882137 TGCAGGTTTAAAACTTCGAGGG 59.118 45.455 2.08 0.00 0.00 4.30
2486 3696 3.304458 GGTGCAGGTTTAAAACTTCGAGG 60.304 47.826 2.08 0.00 0.00 4.63
2487 3697 3.304458 GGGTGCAGGTTTAAAACTTCGAG 60.304 47.826 2.08 0.00 0.00 4.04
2488 3698 2.619646 GGGTGCAGGTTTAAAACTTCGA 59.380 45.455 2.08 0.00 0.00 3.71
2489 3699 2.359531 TGGGTGCAGGTTTAAAACTTCG 59.640 45.455 2.08 0.00 0.00 3.79
2490 3700 3.634910 TCTGGGTGCAGGTTTAAAACTTC 59.365 43.478 2.08 0.00 0.00 3.01
2491 3701 3.637769 TCTGGGTGCAGGTTTAAAACTT 58.362 40.909 2.08 0.00 0.00 2.66
2492 3702 3.306472 TCTGGGTGCAGGTTTAAAACT 57.694 42.857 0.00 0.00 0.00 2.66
2493 3703 3.131400 TGTTCTGGGTGCAGGTTTAAAAC 59.869 43.478 0.00 0.00 0.00 2.43
2494 3704 3.131400 GTGTTCTGGGTGCAGGTTTAAAA 59.869 43.478 0.00 0.00 0.00 1.52
2495 3705 2.691011 GTGTTCTGGGTGCAGGTTTAAA 59.309 45.455 0.00 0.00 0.00 1.52
2496 3706 2.303175 GTGTTCTGGGTGCAGGTTTAA 58.697 47.619 0.00 0.00 0.00 1.52
2497 3707 1.213182 TGTGTTCTGGGTGCAGGTTTA 59.787 47.619 0.00 0.00 0.00 2.01
2498 3708 0.033601 TGTGTTCTGGGTGCAGGTTT 60.034 50.000 0.00 0.00 0.00 3.27
2499 3709 0.751643 GTGTGTTCTGGGTGCAGGTT 60.752 55.000 0.00 0.00 0.00 3.50
2500 3710 1.152963 GTGTGTTCTGGGTGCAGGT 60.153 57.895 0.00 0.00 0.00 4.00
2501 3711 0.538057 ATGTGTGTTCTGGGTGCAGG 60.538 55.000 0.00 0.00 0.00 4.85
2502 3712 1.001048 CAATGTGTGTTCTGGGTGCAG 60.001 52.381 0.00 0.00 0.00 4.41
2503 3713 1.031235 CAATGTGTGTTCTGGGTGCA 58.969 50.000 0.00 0.00 0.00 4.57
2504 3714 0.318955 GCAATGTGTGTTCTGGGTGC 60.319 55.000 0.00 0.00 0.00 5.01
2505 3715 1.321474 AGCAATGTGTGTTCTGGGTG 58.679 50.000 0.00 0.00 0.00 4.61
2506 3716 1.682854 CAAGCAATGTGTGTTCTGGGT 59.317 47.619 0.00 0.00 0.00 4.51
2507 3717 1.682854 ACAAGCAATGTGTGTTCTGGG 59.317 47.619 0.00 0.00 41.93 4.45
2508 3718 3.374745 GAACAAGCAATGTGTGTTCTGG 58.625 45.455 17.79 0.00 44.95 3.86
2509 3719 3.038017 CGAACAAGCAATGTGTGTTCTG 58.962 45.455 20.55 13.93 45.76 3.02
2510 3720 2.541588 GCGAACAAGCAATGTGTGTTCT 60.542 45.455 20.55 0.00 45.76 3.01
2511 3721 1.780860 GCGAACAAGCAATGTGTGTTC 59.219 47.619 16.13 16.13 42.99 3.18
2512 3722 1.535860 GGCGAACAAGCAATGTGTGTT 60.536 47.619 3.89 3.89 42.99 3.32
2513 3723 0.030638 GGCGAACAAGCAATGTGTGT 59.969 50.000 0.00 0.00 42.99 3.72
2514 3724 0.998226 CGGCGAACAAGCAATGTGTG 60.998 55.000 0.00 0.00 42.99 3.82
2515 3725 1.163420 TCGGCGAACAAGCAATGTGT 61.163 50.000 7.35 0.00 42.99 3.72
2516 3726 0.725784 GTCGGCGAACAAGCAATGTG 60.726 55.000 12.92 0.00 42.99 3.21
2517 3727 1.163420 TGTCGGCGAACAAGCAATGT 61.163 50.000 12.92 0.00 46.82 2.71
2518 3728 0.453282 CTGTCGGCGAACAAGCAATG 60.453 55.000 12.92 0.00 39.27 2.82
2519 3729 1.868997 CTGTCGGCGAACAAGCAAT 59.131 52.632 12.92 0.00 39.27 3.56
2520 3730 2.892334 GCTGTCGGCGAACAAGCAA 61.892 57.895 26.12 0.00 39.27 3.91
2521 3731 3.345808 GCTGTCGGCGAACAAGCA 61.346 61.111 26.12 14.30 39.27 3.91
2522 3732 4.090057 GGCTGTCGGCGAACAAGC 62.090 66.667 24.21 24.21 42.94 4.01
2523 3733 0.669318 TTAGGCTGTCGGCGAACAAG 60.669 55.000 12.92 11.21 42.94 3.16
2524 3734 0.947180 GTTAGGCTGTCGGCGAACAA 60.947 55.000 12.92 0.00 45.94 2.83
2525 3735 1.373748 GTTAGGCTGTCGGCGAACA 60.374 57.895 12.92 11.53 45.94 3.18
2526 3736 2.098831 GGTTAGGCTGTCGGCGAAC 61.099 63.158 12.92 3.76 45.94 3.95
2527 3737 2.263540 GGTTAGGCTGTCGGCGAA 59.736 61.111 12.92 0.87 42.94 4.70
2528 3738 2.992689 TGGTTAGGCTGTCGGCGA 60.993 61.111 4.99 4.99 42.94 5.54
2529 3739 2.813908 GTGGTTAGGCTGTCGGCG 60.814 66.667 0.00 0.00 42.94 6.46
2530 3740 2.813908 CGTGGTTAGGCTGTCGGC 60.814 66.667 0.00 0.00 40.90 5.54
2531 3741 2.813908 GCGTGGTTAGGCTGTCGG 60.814 66.667 0.00 0.00 34.94 4.79
2532 3742 3.179265 CGCGTGGTTAGGCTGTCG 61.179 66.667 0.00 0.00 35.61 4.35
2533 3743 3.488090 GCGCGTGGTTAGGCTGTC 61.488 66.667 8.43 0.00 35.61 3.51
2547 3757 2.897350 ATTAAGCAGCTCCCGCGC 60.897 61.111 0.00 0.00 42.32 6.86
2548 3758 0.882042 ATCATTAAGCAGCTCCCGCG 60.882 55.000 0.00 0.00 42.32 6.46
2549 3759 0.871057 GATCATTAAGCAGCTCCCGC 59.129 55.000 0.00 0.00 0.00 6.13
2550 3760 2.141517 CTGATCATTAAGCAGCTCCCG 58.858 52.381 0.00 0.00 0.00 5.14
2556 3766 2.617308 CACCTGGCTGATCATTAAGCAG 59.383 50.000 0.00 0.00 41.36 4.24
2557 3767 2.239402 TCACCTGGCTGATCATTAAGCA 59.761 45.455 0.00 0.00 41.36 3.91
2558 3768 2.923121 TCACCTGGCTGATCATTAAGC 58.077 47.619 0.00 0.00 38.76 3.09
2559 3769 6.127535 ACAATTTCACCTGGCTGATCATTAAG 60.128 38.462 0.00 0.00 0.00 1.85
2560 3770 5.716228 ACAATTTCACCTGGCTGATCATTAA 59.284 36.000 0.00 0.00 0.00 1.40
2561 3771 5.125900 CACAATTTCACCTGGCTGATCATTA 59.874 40.000 0.00 0.00 0.00 1.90
2562 3772 4.081862 CACAATTTCACCTGGCTGATCATT 60.082 41.667 0.00 0.00 0.00 2.57
2563 3773 3.446161 CACAATTTCACCTGGCTGATCAT 59.554 43.478 0.00 0.00 0.00 2.45
2564 3774 2.821378 CACAATTTCACCTGGCTGATCA 59.179 45.455 0.00 0.00 0.00 2.92
2565 3775 3.084039 TCACAATTTCACCTGGCTGATC 58.916 45.455 0.00 0.00 0.00 2.92
2566 3776 3.087031 CTCACAATTTCACCTGGCTGAT 58.913 45.455 0.00 0.00 0.00 2.90
2567 3777 2.507484 CTCACAATTTCACCTGGCTGA 58.493 47.619 0.00 0.00 0.00 4.26
2568 3778 1.542915 CCTCACAATTTCACCTGGCTG 59.457 52.381 0.00 0.00 0.00 4.85
2569 3779 1.548582 CCCTCACAATTTCACCTGGCT 60.549 52.381 0.00 0.00 0.00 4.75
2570 3780 0.890683 CCCTCACAATTTCACCTGGC 59.109 55.000 0.00 0.00 0.00 4.85
2571 3781 2.584835 TCCCTCACAATTTCACCTGG 57.415 50.000 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.