Multiple sequence alignment - TraesCS6A01G056500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G056500 chr6A 100.000 4468 0 0 1 4468 29782795 29787262 0.000000e+00 8251.0
1 TraesCS6A01G056500 chr6A 82.050 1610 246 33 2301 3878 493842512 493844110 0.000000e+00 1332.0
2 TraesCS6A01G056500 chr6A 81.756 1617 251 31 2291 3878 493756326 493757927 0.000000e+00 1312.0
3 TraesCS6A01G056500 chr6A 81.666 1609 248 36 2307 3881 495154050 495152455 0.000000e+00 1293.0
4 TraesCS6A01G056500 chr6A 80.389 1234 198 32 2307 3507 494880609 494879387 0.000000e+00 898.0
5 TraesCS6A01G056500 chr6A 100.000 155 0 0 4722 4876 29787516 29787670 2.220000e-73 287.0
6 TraesCS6A01G056500 chr6A 100.000 78 0 0 4799 4876 29791506 29791429 1.410000e-30 145.0
7 TraesCS6A01G056500 chr6A 89.091 55 4 2 547 600 531789741 531789688 3.150000e-07 67.6
8 TraesCS6A01G056500 chr6D 90.308 3735 192 78 641 4299 28246529 28242889 0.000000e+00 4735.0
9 TraesCS6A01G056500 chr6D 81.948 1612 244 35 2301 3878 348861382 348862980 0.000000e+00 1321.0
10 TraesCS6A01G056500 chr6D 82.059 1583 239 33 2307 3877 350205034 350203485 0.000000e+00 1308.0
11 TraesCS6A01G056500 chr6D 81.750 1611 249 36 2301 3878 349031445 349033043 0.000000e+00 1304.0
12 TraesCS6A01G056500 chr6D 87.814 558 53 7 1 557 28248024 28247481 1.480000e-179 640.0
13 TraesCS6A01G056500 chr6D 78.442 552 65 39 624 1139 28249411 28248878 1.320000e-80 311.0
14 TraesCS6A01G056500 chr6B 89.595 3681 196 91 641 4233 52084821 52088402 0.000000e+00 4503.0
15 TraesCS6A01G056500 chr6B 81.801 1610 250 33 2301 3878 529774069 529775667 0.000000e+00 1310.0
16 TraesCS6A01G056500 chr6B 81.739 1610 249 33 2301 3877 529889896 529891493 0.000000e+00 1303.0
17 TraesCS6A01G056500 chr6B 81.512 1601 255 27 2307 3876 530852165 530850575 0.000000e+00 1279.0
18 TraesCS6A01G056500 chr6B 75.970 541 74 31 610 1122 52082127 52082639 1.370000e-55 228.0
19 TraesCS6A01G056500 chr6B 79.257 323 54 9 17 337 526042163 526041852 3.820000e-51 213.0
20 TraesCS6A01G056500 chr1D 79.822 337 65 3 3 337 470568071 470568406 4.880000e-60 243.0
21 TraesCS6A01G056500 chr4D 78.994 338 67 4 3 337 85855644 85855980 1.370000e-55 228.0
22 TraesCS6A01G056500 chr2D 97.647 85 1 1 4793 4876 34062498 34062414 1.410000e-30 145.0
23 TraesCS6A01G056500 chr2D 96.471 85 2 1 4793 4876 34089574 34089490 6.580000e-29 139.0
24 TraesCS6A01G056500 chr2D 95.556 45 2 0 570 614 191052280 191052236 6.770000e-09 73.1
25 TraesCS6A01G056500 chr7A 97.531 81 1 1 4797 4876 555089682 555089602 2.370000e-28 137.0
26 TraesCS6A01G056500 chr7A 97.436 78 2 0 4799 4876 555085703 555085780 3.060000e-27 134.0
27 TraesCS6A01G056500 chr7A 92.000 50 1 3 554 601 40876617 40876665 3.150000e-07 67.6
28 TraesCS6A01G056500 chr2B 96.203 79 3 0 4798 4876 40312997 40313075 3.960000e-26 130.0
29 TraesCS6A01G056500 chr1A 96.203 79 3 0 4798 4876 96433318 96433396 3.960000e-26 130.0
30 TraesCS6A01G056500 chr1A 93.478 46 3 0 556 601 57307344 57307299 8.760000e-08 69.4
31 TraesCS6A01G056500 chr5B 94.048 84 4 1 4793 4876 493688361 493688443 5.120000e-25 126.0
32 TraesCS6A01G056500 chr4A 93.103 87 5 1 4791 4876 320919783 320919869 5.120000e-25 126.0
33 TraesCS6A01G056500 chr4A 81.457 151 23 3 61 210 555507976 555508122 8.570000e-23 119.0
34 TraesCS6A01G056500 chr7D 80.357 112 22 0 37 148 166209312 166209201 8.700000e-13 86.1
35 TraesCS6A01G056500 chr2A 92.000 50 4 0 553 602 51639899 51639948 2.430000e-08 71.3
36 TraesCS6A01G056500 chr2A 91.667 48 4 0 554 601 109323369 109323416 3.150000e-07 67.6
37 TraesCS6A01G056500 chr3B 88.889 54 5 1 548 601 772382838 772382890 1.130000e-06 65.8
38 TraesCS6A01G056500 chr3A 90.000 50 5 0 552 601 408947006 408946957 1.130000e-06 65.8
39 TraesCS6A01G056500 chr3A 90.000 50 5 0 552 601 447274972 447274923 1.130000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G056500 chr6A 29782795 29787670 4875 False 4269.000000 8251 100.000000 1 4876 2 chr6A.!!$F3 4875
1 TraesCS6A01G056500 chr6A 493842512 493844110 1598 False 1332.000000 1332 82.050000 2301 3878 1 chr6A.!!$F2 1577
2 TraesCS6A01G056500 chr6A 493756326 493757927 1601 False 1312.000000 1312 81.756000 2291 3878 1 chr6A.!!$F1 1587
3 TraesCS6A01G056500 chr6A 495152455 495154050 1595 True 1293.000000 1293 81.666000 2307 3881 1 chr6A.!!$R3 1574
4 TraesCS6A01G056500 chr6A 494879387 494880609 1222 True 898.000000 898 80.389000 2307 3507 1 chr6A.!!$R2 1200
5 TraesCS6A01G056500 chr6D 28242889 28249411 6522 True 1895.333333 4735 85.521333 1 4299 3 chr6D.!!$R2 4298
6 TraesCS6A01G056500 chr6D 348861382 348862980 1598 False 1321.000000 1321 81.948000 2301 3878 1 chr6D.!!$F1 1577
7 TraesCS6A01G056500 chr6D 350203485 350205034 1549 True 1308.000000 1308 82.059000 2307 3877 1 chr6D.!!$R1 1570
8 TraesCS6A01G056500 chr6D 349031445 349033043 1598 False 1304.000000 1304 81.750000 2301 3878 1 chr6D.!!$F2 1577
9 TraesCS6A01G056500 chr6B 52082127 52088402 6275 False 2365.500000 4503 82.782500 610 4233 2 chr6B.!!$F3 3623
10 TraesCS6A01G056500 chr6B 529774069 529775667 1598 False 1310.000000 1310 81.801000 2301 3878 1 chr6B.!!$F1 1577
11 TraesCS6A01G056500 chr6B 529889896 529891493 1597 False 1303.000000 1303 81.739000 2301 3877 1 chr6B.!!$F2 1576
12 TraesCS6A01G056500 chr6B 530850575 530852165 1590 True 1279.000000 1279 81.512000 2307 3876 1 chr6B.!!$R2 1569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
531 1920 0.240678 TGAAAAATCGCATGCACGCT 59.759 45.0 19.57 0.00 0.00 5.07 F
978 3309 0.336392 TGGCTAGAGAAGAGGAGGCA 59.664 55.0 0.00 0.00 41.66 4.75 F
1561 3938 0.107703 TGTACGTAGGATCGGACGGT 60.108 55.0 18.68 9.41 46.28 4.83 F
1706 4089 0.175760 TCATGGCGGCTAACACTCTC 59.824 55.0 11.43 0.00 0.00 3.20 F
2309 4753 0.480690 TGGTGGTGCATGTAGGGTTT 59.519 50.0 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 3919 0.107703 ACCGTCCGATCCTACGTACA 60.108 55.000 12.05 0.0 37.40 2.90 R
1970 4390 1.394917 CCGCTCTTGGATCGTTTGAAG 59.605 52.381 0.00 0.0 0.00 3.02 R
2417 4861 1.521681 GTAGCTGGTGCCGATCCAC 60.522 63.158 0.00 0.0 40.80 4.02 R
2627 5096 2.689034 GCCACCAGGTAGAGCCCT 60.689 66.667 0.00 0.0 38.26 5.19 R
4066 6575 0.034670 GGATCTTGAGCACTGCCCTT 60.035 55.000 0.00 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 1420 3.230976 ACAGAGGGGAAATCCACAAAAC 58.769 45.455 4.20 0.00 43.57 2.43
45 1433 2.110213 AAAACAGTGGGCGAGCGA 59.890 55.556 0.00 0.00 0.00 4.93
54 1442 3.323136 GGCGAGCGACATAGTGCG 61.323 66.667 0.00 0.00 35.87 5.34
62 1450 1.125021 GCGACATAGTGCGTGATATGC 59.875 52.381 0.00 0.00 33.53 3.14
113 1501 4.202161 TGAGAGACTCCAAGAAACAGTGTC 60.202 45.833 0.00 0.00 32.00 3.67
122 1510 4.562757 CCAAGAAACAGTGTCCGGAGAATA 60.563 45.833 3.06 0.00 0.00 1.75
176 1564 2.962859 AGCCCACTCAACAATTTCCTT 58.037 42.857 0.00 0.00 0.00 3.36
187 1575 4.276058 ACAATTTCCTTCTGCCCAAATG 57.724 40.909 0.00 0.00 0.00 2.32
190 1578 2.380064 TTCCTTCTGCCCAAATGTGT 57.620 45.000 0.00 0.00 0.00 3.72
193 1581 1.270550 CCTTCTGCCCAAATGTGTGAC 59.729 52.381 0.00 0.00 0.00 3.67
219 1607 3.181418 ACAAGATGTTCCACCTCCCATTT 60.181 43.478 0.00 0.00 0.00 2.32
221 1609 3.434309 AGATGTTCCACCTCCCATTTTG 58.566 45.455 0.00 0.00 0.00 2.44
243 1631 2.889018 GTCGCGGAACCGGAATCC 60.889 66.667 9.46 14.95 40.19 3.01
245 1633 2.585247 CGCGGAACCGGAATCCTC 60.585 66.667 22.68 16.58 40.19 3.71
282 1670 3.889538 AGCAAAACAGACTAGGAAAACCC 59.110 43.478 0.00 0.00 0.00 4.11
284 1672 4.098807 GCAAAACAGACTAGGAAAACCCAA 59.901 41.667 0.00 0.00 37.41 4.12
295 1683 1.396607 AAAACCCAACCGAAGTGCCC 61.397 55.000 0.00 0.00 0.00 5.36
296 1684 4.636435 ACCCAACCGAAGTGCCCG 62.636 66.667 0.00 0.00 0.00 6.13
319 1708 3.286404 CAACCCATGGATCCAGCAA 57.714 52.632 21.33 0.00 0.00 3.91
320 1709 1.108776 CAACCCATGGATCCAGCAAG 58.891 55.000 21.33 11.07 0.00 4.01
321 1710 1.002069 AACCCATGGATCCAGCAAGA 58.998 50.000 21.33 0.00 0.00 3.02
322 1711 1.002069 ACCCATGGATCCAGCAAGAA 58.998 50.000 21.33 0.00 0.00 2.52
323 1712 1.572415 ACCCATGGATCCAGCAAGAAT 59.428 47.619 21.33 0.00 0.00 2.40
324 1713 2.023695 ACCCATGGATCCAGCAAGAATT 60.024 45.455 21.33 0.00 0.00 2.17
327 1716 3.181469 CCATGGATCCAGCAAGAATTTGG 60.181 47.826 21.33 15.06 34.79 3.28
338 1727 3.832490 GCAAGAATTTGGTACCTTCCCTT 59.168 43.478 14.36 7.30 34.79 3.95
411 1800 8.696043 ATGAAGCTAATGATATAAGTTTGGCA 57.304 30.769 0.00 0.00 0.00 4.92
412 1801 8.696043 TGAAGCTAATGATATAAGTTTGGCAT 57.304 30.769 0.00 0.00 0.00 4.40
414 1803 9.971922 GAAGCTAATGATATAAGTTTGGCATTT 57.028 29.630 0.00 0.00 0.00 2.32
415 1804 9.971922 AAGCTAATGATATAAGTTTGGCATTTC 57.028 29.630 0.00 0.00 0.00 2.17
417 1806 9.403110 GCTAATGATATAAGTTTGGCATTTCAG 57.597 33.333 0.00 0.00 0.00 3.02
420 1809 9.976511 AATGATATAAGTTTGGCATTTCAGATG 57.023 29.630 0.00 0.00 0.00 2.90
421 1810 8.523915 TGATATAAGTTTGGCATTTCAGATGT 57.476 30.769 0.00 0.00 0.00 3.06
426 1815 7.894376 AAGTTTGGCATTTCAGATGTAAATG 57.106 32.000 0.00 0.00 43.87 2.32
427 1816 6.996509 AGTTTGGCATTTCAGATGTAAATGT 58.003 32.000 9.53 0.00 43.26 2.71
429 1818 7.385752 AGTTTGGCATTTCAGATGTAAATGTTG 59.614 33.333 9.53 0.00 43.26 3.33
430 1819 6.343716 TGGCATTTCAGATGTAAATGTTGT 57.656 33.333 9.53 0.00 43.26 3.32
434 1823 7.274250 GGCATTTCAGATGTAAATGTTGTTCTC 59.726 37.037 9.53 0.00 43.26 2.87
435 1824 8.025445 GCATTTCAGATGTAAATGTTGTTCTCT 58.975 33.333 9.53 0.00 43.26 3.10
451 1840 9.787532 TGTTGTTCTCTAAAAACTTGATCAAAG 57.212 29.630 9.88 2.96 42.07 2.77
463 1852 3.878086 TGATCAAAGTTTGTGACGCTC 57.122 42.857 15.08 5.22 0.00 5.03
464 1853 2.220824 TGATCAAAGTTTGTGACGCTCG 59.779 45.455 15.08 0.00 0.00 5.03
465 1854 1.929230 TCAAAGTTTGTGACGCTCGA 58.071 45.000 15.08 0.00 0.00 4.04
466 1855 1.591158 TCAAAGTTTGTGACGCTCGAC 59.409 47.619 15.08 0.00 0.00 4.20
470 1859 2.277084 AGTTTGTGACGCTCGACTTTT 58.723 42.857 0.00 0.00 0.00 2.27
471 1860 2.676342 AGTTTGTGACGCTCGACTTTTT 59.324 40.909 0.00 0.00 0.00 1.94
507 1896 6.245115 TGTGCAACATTATGAAACAGAGAG 57.755 37.500 0.00 0.00 45.67 3.20
508 1897 5.091431 GTGCAACATTATGAAACAGAGAGC 58.909 41.667 0.00 0.00 36.32 4.09
509 1898 4.142838 TGCAACATTATGAAACAGAGAGCG 60.143 41.667 0.00 0.00 0.00 5.03
510 1899 4.142816 GCAACATTATGAAACAGAGAGCGT 60.143 41.667 0.00 0.00 0.00 5.07
512 1901 6.238211 GCAACATTATGAAACAGAGAGCGTAT 60.238 38.462 0.00 0.00 0.00 3.06
513 1902 6.834959 ACATTATGAAACAGAGAGCGTATG 57.165 37.500 0.00 0.00 0.00 2.39
516 1905 7.549134 ACATTATGAAACAGAGAGCGTATGAAA 59.451 33.333 0.00 0.00 0.00 2.69
517 1906 7.899178 TTATGAAACAGAGAGCGTATGAAAA 57.101 32.000 0.00 0.00 0.00 2.29
518 1907 6.801539 ATGAAACAGAGAGCGTATGAAAAA 57.198 33.333 0.00 0.00 0.00 1.94
519 1908 6.801539 TGAAACAGAGAGCGTATGAAAAAT 57.198 33.333 0.00 0.00 0.00 1.82
521 1910 5.456192 AACAGAGAGCGTATGAAAAATCG 57.544 39.130 0.00 0.00 0.00 3.34
527 1916 2.449189 GCGTATGAAAAATCGCATGCA 58.551 42.857 19.57 5.34 46.40 3.96
528 1917 2.214020 GCGTATGAAAAATCGCATGCAC 59.786 45.455 19.57 2.87 46.40 4.57
529 1918 2.460041 CGTATGAAAAATCGCATGCACG 59.540 45.455 19.57 11.76 0.00 5.34
530 1919 1.270971 ATGAAAAATCGCATGCACGC 58.729 45.000 19.57 0.00 0.00 5.34
531 1920 0.240678 TGAAAAATCGCATGCACGCT 59.759 45.000 19.57 0.00 0.00 5.07
533 1922 1.720852 GAAAAATCGCATGCACGCTTT 59.279 42.857 19.57 11.15 33.23 3.51
535 1924 2.849880 AAATCGCATGCACGCTTTAT 57.150 40.000 19.57 0.00 30.38 1.40
536 1925 2.389713 AATCGCATGCACGCTTTATC 57.610 45.000 19.57 0.00 0.00 1.75
537 1926 1.298602 ATCGCATGCACGCTTTATCA 58.701 45.000 19.57 0.00 0.00 2.15
539 1928 1.466558 TCGCATGCACGCTTTATCAAA 59.533 42.857 19.57 0.00 0.00 2.69
542 1931 2.595536 GCATGCACGCTTTATCAAACAG 59.404 45.455 14.21 0.00 0.00 3.16
543 1932 2.330231 TGCACGCTTTATCAAACAGC 57.670 45.000 0.00 0.00 0.00 4.40
544 1933 1.606189 TGCACGCTTTATCAAACAGCA 59.394 42.857 0.00 0.00 32.71 4.41
545 1934 2.228582 TGCACGCTTTATCAAACAGCAT 59.771 40.909 0.00 0.00 32.71 3.79
547 1936 2.595536 CACGCTTTATCAAACAGCATGC 59.404 45.455 10.51 10.51 42.53 4.06
549 1938 2.850060 CGCTTTATCAAACAGCATGCAG 59.150 45.455 21.98 15.38 42.53 4.41
550 1939 3.671433 CGCTTTATCAAACAGCATGCAGT 60.671 43.478 21.98 16.18 42.53 4.40
554 1943 7.195646 GCTTTATCAAACAGCATGCAGTATAA 58.804 34.615 21.98 15.25 42.53 0.98
555 1944 7.864379 GCTTTATCAAACAGCATGCAGTATAAT 59.136 33.333 21.98 13.60 42.53 1.28
560 1949 8.900983 TCAAACAGCATGCAGTATAATATGTA 57.099 30.769 21.98 0.00 42.53 2.29
561 1950 8.773645 TCAAACAGCATGCAGTATAATATGTAC 58.226 33.333 21.98 0.00 42.53 2.90
563 1952 8.908786 AACAGCATGCAGTATAATATGTACTT 57.091 30.769 21.98 0.00 42.53 2.24
564 1953 8.539770 ACAGCATGCAGTATAATATGTACTTC 57.460 34.615 21.98 0.00 42.53 3.01
565 1954 7.604164 ACAGCATGCAGTATAATATGTACTTCC 59.396 37.037 21.98 0.00 42.53 3.46
566 1955 7.821359 CAGCATGCAGTATAATATGTACTTCCT 59.179 37.037 21.98 0.00 30.24 3.36
567 1956 8.378565 AGCATGCAGTATAATATGTACTTCCTT 58.621 33.333 21.98 0.00 30.24 3.36
568 1957 9.003658 GCATGCAGTATAATATGTACTTCCTTT 57.996 33.333 14.21 0.00 30.24 3.11
571 1960 9.542462 TGCAGTATAATATGTACTTCCTTTGTC 57.458 33.333 0.00 0.00 30.24 3.18
572 1961 9.765795 GCAGTATAATATGTACTTCCTTTGTCT 57.234 33.333 0.00 0.00 30.24 3.41
582 1971 8.974060 TGTACTTCCTTTGTCTCAAAATAAGT 57.026 30.769 17.50 17.50 33.37 2.24
583 1972 8.836413 TGTACTTCCTTTGTCTCAAAATAAGTG 58.164 33.333 19.96 2.96 32.16 3.16
584 1973 9.052759 GTACTTCCTTTGTCTCAAAATAAGTGA 57.947 33.333 19.96 10.01 32.16 3.41
585 1974 7.931275 ACTTCCTTTGTCTCAAAATAAGTGAC 58.069 34.615 14.91 0.00 30.25 3.67
586 1975 7.775561 ACTTCCTTTGTCTCAAAATAAGTGACT 59.224 33.333 14.91 0.00 30.25 3.41
587 1976 7.730364 TCCTTTGTCTCAAAATAAGTGACTC 57.270 36.000 0.00 0.00 32.38 3.36
588 1977 7.279615 TCCTTTGTCTCAAAATAAGTGACTCA 58.720 34.615 0.00 0.00 32.38 3.41
589 1978 7.773224 TCCTTTGTCTCAAAATAAGTGACTCAA 59.227 33.333 0.00 0.00 32.38 3.02
590 1979 8.072567 CCTTTGTCTCAAAATAAGTGACTCAAG 58.927 37.037 0.00 0.00 32.38 3.02
591 1980 8.506168 TTTGTCTCAAAATAAGTGACTCAAGT 57.494 30.769 0.00 0.00 32.38 3.16
592 1981 8.506168 TTGTCTCAAAATAAGTGACTCAAGTT 57.494 30.769 0.00 0.00 32.38 2.66
593 1982 8.506168 TGTCTCAAAATAAGTGACTCAAGTTT 57.494 30.769 0.00 0.00 32.38 2.66
594 1983 8.397906 TGTCTCAAAATAAGTGACTCAAGTTTG 58.602 33.333 11.98 11.98 32.38 2.93
595 1984 8.398665 GTCTCAAAATAAGTGACTCAAGTTTGT 58.601 33.333 15.56 0.00 0.00 2.83
596 1985 9.607988 TCTCAAAATAAGTGACTCAAGTTTGTA 57.392 29.630 15.56 7.24 0.00 2.41
597 1986 9.651718 CTCAAAATAAGTGACTCAAGTTTGTAC 57.348 33.333 15.56 0.00 0.00 2.90
598 1987 9.391006 TCAAAATAAGTGACTCAAGTTTGTACT 57.609 29.630 15.56 0.00 35.68 2.73
604 1993 8.594881 AAGTGACTCAAGTTTGTACTAATGAG 57.405 34.615 14.95 14.95 41.72 2.90
605 1994 7.155328 AGTGACTCAAGTTTGTACTAATGAGG 58.845 38.462 18.52 6.91 40.90 3.86
606 1995 6.369065 GTGACTCAAGTTTGTACTAATGAGGG 59.631 42.308 18.52 5.30 40.90 4.30
607 1996 6.269077 TGACTCAAGTTTGTACTAATGAGGGA 59.731 38.462 18.52 7.31 40.90 4.20
608 1997 6.702329 ACTCAAGTTTGTACTAATGAGGGAG 58.298 40.000 18.52 12.16 40.90 4.30
609 1998 6.270231 ACTCAAGTTTGTACTAATGAGGGAGT 59.730 38.462 18.52 12.60 40.90 3.85
610 1999 7.453752 ACTCAAGTTTGTACTAATGAGGGAGTA 59.546 37.037 18.52 0.00 40.90 2.59
611 2000 8.375493 TCAAGTTTGTACTAATGAGGGAGTAT 57.625 34.615 0.00 0.00 33.17 2.12
612 2001 8.822805 TCAAGTTTGTACTAATGAGGGAGTATT 58.177 33.333 0.00 0.00 33.17 1.89
613 2002 9.449719 CAAGTTTGTACTAATGAGGGAGTATTT 57.550 33.333 0.00 0.00 33.17 1.40
614 2003 9.449719 AAGTTTGTACTAATGAGGGAGTATTTG 57.550 33.333 0.00 0.00 33.17 2.32
615 2004 7.553044 AGTTTGTACTAATGAGGGAGTATTTGC 59.447 37.037 0.00 0.00 31.21 3.68
663 2981 7.560700 CGTTTTTATTTTTGAACTGGTAAGGC 58.439 34.615 0.00 0.00 0.00 4.35
673 2991 2.373224 ACTGGTAAGGCCGAGTACTAC 58.627 52.381 12.27 0.00 41.21 2.73
742 3063 3.896648 CGTTCTGGCGCCATTAATTAT 57.103 42.857 32.87 0.00 0.00 1.28
780 3102 2.154074 ACCCAGACCCAGTGGAACC 61.154 63.158 11.95 0.00 37.80 3.62
789 3111 2.572104 ACCCAGTGGAACCAGTCTATTC 59.428 50.000 11.95 0.00 37.80 1.75
824 3146 1.682684 CGACTCACCTACCCCTGCT 60.683 63.158 0.00 0.00 0.00 4.24
976 3307 1.039856 GCTGGCTAGAGAAGAGGAGG 58.960 60.000 0.00 0.00 0.00 4.30
978 3309 0.336392 TGGCTAGAGAAGAGGAGGCA 59.664 55.000 0.00 0.00 41.66 4.75
984 3315 4.087892 GAAGAGGAGGCAGGCGCA 62.088 66.667 10.83 0.00 41.24 6.09
986 3317 3.618780 AAGAGGAGGCAGGCGCAAG 62.619 63.158 10.83 0.81 41.24 4.01
987 3318 4.400961 GAGGAGGCAGGCGCAAGT 62.401 66.667 10.83 0.00 41.24 3.16
996 3327 2.126071 GGCGCAAGTCTACGAGCA 60.126 61.111 10.83 0.00 40.30 4.26
1020 3370 1.817357 TGAAGAAGCACAGCATCCAG 58.183 50.000 0.00 0.00 0.00 3.86
1151 3501 3.554692 CGGCTTTACAGCTCCGCG 61.555 66.667 0.00 0.00 46.44 6.46
1152 3502 3.195698 GGCTTTACAGCTCCGCGG 61.196 66.667 22.12 22.12 46.44 6.46
1153 3503 3.195698 GCTTTACAGCTCCGCGGG 61.196 66.667 27.83 17.41 43.51 6.13
1176 3531 1.470890 GTCCATCTCGATCGATCCCTC 59.529 57.143 19.78 4.59 0.00 4.30
1187 3542 3.878237 TCGATCCCTCCTTCTTAGCTA 57.122 47.619 0.00 0.00 0.00 3.32
1188 3543 4.390129 TCGATCCCTCCTTCTTAGCTAT 57.610 45.455 0.00 0.00 0.00 2.97
1190 3545 4.043561 TCGATCCCTCCTTCTTAGCTATCT 59.956 45.833 0.00 0.00 0.00 1.98
1192 3547 5.336372 CGATCCCTCCTTCTTAGCTATCTTG 60.336 48.000 0.00 0.00 0.00 3.02
1193 3548 3.643792 TCCCTCCTTCTTAGCTATCTTGC 59.356 47.826 0.00 0.00 0.00 4.01
1195 3550 4.041444 CCCTCCTTCTTAGCTATCTTGCAT 59.959 45.833 0.00 0.00 34.99 3.96
1196 3551 5.237048 CCTCCTTCTTAGCTATCTTGCATC 58.763 45.833 0.00 0.00 34.99 3.91
1210 3568 2.672961 TGCATCTAGAACGAACCAGG 57.327 50.000 0.00 0.00 0.00 4.45
1212 3570 1.941325 CATCTAGAACGAACCAGGCC 58.059 55.000 0.00 0.00 0.00 5.19
1267 3628 5.244785 TGATCAGCTTGATTGAATTGCTC 57.755 39.130 0.00 0.00 37.20 4.26
1271 3632 2.421424 AGCTTGATTGAATTGCTCCGAC 59.579 45.455 0.00 0.00 0.00 4.79
1300 3661 1.135112 TCGGTCGATGGTCAACTCATG 60.135 52.381 0.00 0.00 0.00 3.07
1321 3684 3.147629 GAGCATCTTGAGATTGGGGATG 58.852 50.000 0.00 0.00 37.44 3.51
1369 3732 3.651480 GACTGTCAATGGCGTGCGC 62.651 63.158 8.17 8.17 41.06 6.09
1381 3748 1.347221 CGTGCGCCCGAACTTAATC 59.653 57.895 6.36 0.00 0.00 1.75
1390 3764 3.248602 GCCCGAACTTAATCAGTATGCAG 59.751 47.826 0.00 0.00 32.94 4.41
1465 3839 3.464907 AGCTGATCACGATCAAGATTGG 58.535 45.455 10.75 0.25 46.10 3.16
1471 3845 3.334691 TCACGATCAAGATTGGTTGACC 58.665 45.455 0.00 0.00 39.25 4.02
1542 3919 4.165950 TGAGGCATCAATGTTGGGTACTAT 59.834 41.667 0.00 0.00 30.61 2.12
1546 3923 5.238650 GGCATCAATGTTGGGTACTATGTAC 59.761 44.000 0.00 0.00 0.00 2.90
1547 3924 5.050363 GCATCAATGTTGGGTACTATGTACG 60.050 44.000 0.00 0.00 0.00 3.67
1548 3925 5.664294 TCAATGTTGGGTACTATGTACGT 57.336 39.130 0.00 0.00 0.00 3.57
1549 3926 6.772360 TCAATGTTGGGTACTATGTACGTA 57.228 37.500 0.00 0.00 0.00 3.57
1561 3938 0.107703 TGTACGTAGGATCGGACGGT 60.108 55.000 18.68 9.41 46.28 4.83
1562 3939 1.138069 TGTACGTAGGATCGGACGGTA 59.862 52.381 18.68 8.67 46.28 4.02
1563 3940 1.795286 GTACGTAGGATCGGACGGTAG 59.205 57.143 18.68 0.00 43.32 3.18
1564 3941 1.162800 ACGTAGGATCGGACGGTAGC 61.163 60.000 18.68 0.00 43.32 3.58
1565 3942 1.162181 CGTAGGATCGGACGGTAGCA 61.162 60.000 9.51 0.00 35.43 3.49
1566 3943 0.592148 GTAGGATCGGACGGTAGCAG 59.408 60.000 0.00 0.00 0.00 4.24
1567 3944 1.170919 TAGGATCGGACGGTAGCAGC 61.171 60.000 0.00 0.00 0.00 5.25
1568 3945 2.782222 GGATCGGACGGTAGCAGCA 61.782 63.158 0.00 0.00 0.00 4.41
1569 3946 1.299468 GATCGGACGGTAGCAGCAG 60.299 63.158 0.00 0.00 0.00 4.24
1570 3947 3.432051 ATCGGACGGTAGCAGCAGC 62.432 63.158 0.00 0.00 42.56 5.25
1607 3990 7.381139 AGACAACAAACACAAAAACAAGTACAG 59.619 33.333 0.00 0.00 0.00 2.74
1616 3999 0.682852 AACAAGTACAGCCAGCGGTA 59.317 50.000 0.00 0.00 0.00 4.02
1621 4004 0.529992 GTACAGCCAGCGGTACATCC 60.530 60.000 22.65 1.39 43.58 3.51
1639 4022 1.515521 CCGTCCAAAGGCTGACAACC 61.516 60.000 4.59 0.00 0.00 3.77
1653 4036 0.874390 ACAACCAAGTACGCATGCTG 59.126 50.000 17.13 11.87 0.00 4.41
1704 4087 0.940126 CATCATGGCGGCTAACACTC 59.060 55.000 11.43 0.00 0.00 3.51
1705 4088 0.833287 ATCATGGCGGCTAACACTCT 59.167 50.000 11.43 0.00 0.00 3.24
1706 4089 0.175760 TCATGGCGGCTAACACTCTC 59.824 55.000 11.43 0.00 0.00 3.20
1775 4167 1.000506 TCCTTCCAGTCTAACACGTGC 59.999 52.381 17.22 0.00 0.00 5.34
1785 4185 6.312918 CCAGTCTAACACGTGCTACATAAAAT 59.687 38.462 17.22 0.00 0.00 1.82
1816 4217 6.152831 TCAGAGATTCGTTCATTTCTACCAGA 59.847 38.462 0.00 0.00 0.00 3.86
1819 4220 8.138712 AGAGATTCGTTCATTTCTACCAGATAC 58.861 37.037 0.00 0.00 0.00 2.24
1820 4221 7.782049 AGATTCGTTCATTTCTACCAGATACA 58.218 34.615 0.00 0.00 0.00 2.29
1821 4222 7.923344 AGATTCGTTCATTTCTACCAGATACAG 59.077 37.037 0.00 0.00 0.00 2.74
1822 4223 6.525578 TCGTTCATTTCTACCAGATACAGT 57.474 37.500 0.00 0.00 0.00 3.55
1858 4274 7.816945 AGTTATGCAATTTGTTATTCAGTGC 57.183 32.000 0.00 0.00 33.64 4.40
1871 4287 4.679373 ATTCAGTGCCATACTCCTACTG 57.321 45.455 0.00 0.00 37.60 2.74
1873 4289 1.482182 CAGTGCCATACTCCTACTGCA 59.518 52.381 0.00 0.00 37.60 4.41
1874 4290 2.093500 CAGTGCCATACTCCTACTGCAA 60.093 50.000 0.00 0.00 37.60 4.08
1886 4302 5.663106 ACTCCTACTGCAATTATTCCTCTGA 59.337 40.000 0.00 0.00 0.00 3.27
1897 4313 6.581388 ATTATTCCTCTGATGTTCCTTGGA 57.419 37.500 0.00 0.00 0.00 3.53
1898 4314 6.581388 TTATTCCTCTGATGTTCCTTGGAT 57.419 37.500 0.00 0.00 0.00 3.41
1899 4315 4.934797 TTCCTCTGATGTTCCTTGGATT 57.065 40.909 0.00 0.00 0.00 3.01
1970 4390 1.427020 CTACCGTTCGTCTCCGTCC 59.573 63.158 0.00 0.00 35.01 4.79
1996 4416 3.077556 ATCCAAGAGCGGCCTCGT 61.078 61.111 0.00 0.00 43.05 4.18
2015 4435 4.798682 TCCCCCTCCTTCTCGGCC 62.799 72.222 0.00 0.00 0.00 6.13
2018 4438 2.364317 CCCTCCTTCTCGGCCTCA 60.364 66.667 0.00 0.00 0.00 3.86
2057 4477 1.134670 CCTTCCTTCTCCTACTTGGCG 60.135 57.143 0.00 0.00 35.26 5.69
2214 4634 1.445582 CCGTTCGTGGTGCTAGGTC 60.446 63.158 0.00 0.00 0.00 3.85
2309 4753 0.480690 TGGTGGTGCATGTAGGGTTT 59.519 50.000 0.00 0.00 0.00 3.27
3410 5894 4.458829 TCCATCTCCTCGGGCGGT 62.459 66.667 0.00 0.00 0.00 5.68
3824 6308 4.036498 GCCATCTCCATGATCAACTTCTTG 59.964 45.833 0.00 0.00 32.05 3.02
3836 6320 0.944311 ACTTCTTGGTGTACAGCGCG 60.944 55.000 19.43 12.78 0.00 6.86
3908 6407 1.956477 TGCTCTGCTTTTTGGTCCTTC 59.044 47.619 0.00 0.00 0.00 3.46
3909 6408 2.234143 GCTCTGCTTTTTGGTCCTTCT 58.766 47.619 0.00 0.00 0.00 2.85
3910 6409 2.625314 GCTCTGCTTTTTGGTCCTTCTT 59.375 45.455 0.00 0.00 0.00 2.52
3911 6410 3.068732 GCTCTGCTTTTTGGTCCTTCTTT 59.931 43.478 0.00 0.00 0.00 2.52
3912 6411 4.442052 GCTCTGCTTTTTGGTCCTTCTTTT 60.442 41.667 0.00 0.00 0.00 2.27
3913 6412 5.664457 CTCTGCTTTTTGGTCCTTCTTTTT 58.336 37.500 0.00 0.00 0.00 1.94
3950 6449 9.613428 TTGGTCCTTCATATAGTTGAGTATTTG 57.387 33.333 0.00 0.00 0.00 2.32
4065 6574 9.764363 TTACAGGATGAGTTTGTATGTATCATC 57.236 33.333 5.18 5.18 43.50 2.92
4066 6575 7.795047 ACAGGATGAGTTTGTATGTATCATCA 58.205 34.615 13.64 0.00 45.16 3.07
4067 6576 8.267183 ACAGGATGAGTTTGTATGTATCATCAA 58.733 33.333 13.64 0.00 45.16 2.57
4068 6577 8.771766 CAGGATGAGTTTGTATGTATCATCAAG 58.228 37.037 13.64 3.83 45.16 3.02
4081 6590 0.809385 CATCAAGGGCAGTGCTCAAG 59.191 55.000 19.27 9.17 0.00 3.02
4087 6596 0.106819 GGGCAGTGCTCAAGATCCAT 60.107 55.000 16.11 0.00 0.00 3.41
4134 6645 5.209659 AGTATCCTCCGGAACTGAAGTAAT 58.790 41.667 5.23 0.00 34.34 1.89
4135 6646 4.674281 ATCCTCCGGAACTGAAGTAATC 57.326 45.455 5.23 0.00 34.34 1.75
4139 6650 4.081642 CCTCCGGAACTGAAGTAATCTCAA 60.082 45.833 5.23 0.00 0.00 3.02
4152 6663 9.396022 TGAAGTAATCTCAAAGTTCAGTCTTTT 57.604 29.630 0.00 0.00 35.77 2.27
4189 6713 3.166657 GCATCGAATTGTTCAGTTCTGC 58.833 45.455 0.00 6.53 0.00 4.26
4209 6733 2.289010 GCCCCATGAAAAAGTTCACCAG 60.289 50.000 0.00 0.00 46.40 4.00
4213 6737 1.028905 TGAAAAAGTTCACCAGGCCG 58.971 50.000 0.00 0.00 38.88 6.13
4251 6775 1.646912 TGGATTCTGGACGGTAACCA 58.353 50.000 0.00 0.00 35.96 3.67
4263 6788 1.671979 GGTAACCAGAAATACCGGGC 58.328 55.000 6.32 0.00 32.84 6.13
4350 6875 8.600449 TTTTTACAAGGTAAGGCAATTTCATG 57.400 30.769 0.00 0.00 0.00 3.07
4351 6876 4.806640 ACAAGGTAAGGCAATTTCATGG 57.193 40.909 0.00 0.00 0.00 3.66
4352 6877 3.515104 ACAAGGTAAGGCAATTTCATGGG 59.485 43.478 0.00 0.00 0.00 4.00
4353 6878 2.750814 AGGTAAGGCAATTTCATGGGG 58.249 47.619 0.00 0.00 0.00 4.96
4354 6879 2.044353 AGGTAAGGCAATTTCATGGGGT 59.956 45.455 0.00 0.00 0.00 4.95
4355 6880 3.270960 AGGTAAGGCAATTTCATGGGGTA 59.729 43.478 0.00 0.00 0.00 3.69
4356 6881 3.383505 GGTAAGGCAATTTCATGGGGTAC 59.616 47.826 0.00 0.00 0.00 3.34
4369 6894 4.926207 GGTACCAAGATTCGCGGT 57.074 55.556 7.15 0.00 36.79 5.68
4371 6896 2.298411 GGTACCAAGATTCGCGGTAA 57.702 50.000 7.15 0.00 37.04 2.85
4372 6897 1.929169 GGTACCAAGATTCGCGGTAAC 59.071 52.381 7.15 7.56 37.04 2.50
4373 6898 2.417787 GGTACCAAGATTCGCGGTAACT 60.418 50.000 7.15 0.00 39.47 2.24
4374 6899 1.722011 ACCAAGATTCGCGGTAACTG 58.278 50.000 6.13 0.00 0.00 3.16
4375 6900 1.274167 ACCAAGATTCGCGGTAACTGA 59.726 47.619 6.13 0.00 0.00 3.41
4376 6901 2.289195 ACCAAGATTCGCGGTAACTGAA 60.289 45.455 6.13 0.00 33.89 3.02
4377 6902 2.093783 CCAAGATTCGCGGTAACTGAAC 59.906 50.000 6.13 0.00 32.46 3.18
4378 6903 2.993899 CAAGATTCGCGGTAACTGAACT 59.006 45.455 6.13 0.00 32.46 3.01
4379 6904 3.314541 AGATTCGCGGTAACTGAACTT 57.685 42.857 6.13 0.00 32.46 2.66
4380 6905 4.445452 AGATTCGCGGTAACTGAACTTA 57.555 40.909 6.13 0.00 32.46 2.24
4381 6906 5.007385 AGATTCGCGGTAACTGAACTTAT 57.993 39.130 6.13 0.00 32.46 1.73
4382 6907 5.041940 AGATTCGCGGTAACTGAACTTATC 58.958 41.667 6.13 0.00 32.46 1.75
4383 6908 2.789208 TCGCGGTAACTGAACTTATCG 58.211 47.619 6.13 0.00 34.03 2.92
4384 6909 2.992744 GCGGTAACTGAACTTATCGC 57.007 50.000 1.22 1.22 45.96 4.58
4385 6910 1.254570 GCGGTAACTGAACTTATCGCG 59.745 52.381 0.00 0.00 44.03 5.87
4386 6911 1.254570 CGGTAACTGAACTTATCGCGC 59.745 52.381 0.00 0.00 0.00 6.86
4387 6912 1.254570 GGTAACTGAACTTATCGCGCG 59.745 52.381 26.76 26.76 0.00 6.86
4388 6913 1.254570 GTAACTGAACTTATCGCGCGG 59.745 52.381 31.69 16.53 0.00 6.46
4389 6914 0.389426 AACTGAACTTATCGCGCGGT 60.389 50.000 31.69 27.77 0.00 5.68
4390 6915 0.452987 ACTGAACTTATCGCGCGGTA 59.547 50.000 31.69 26.39 0.00 4.02
4391 6916 1.135315 ACTGAACTTATCGCGCGGTAA 60.135 47.619 31.31 31.31 0.00 2.85
4392 6917 1.517276 CTGAACTTATCGCGCGGTAAG 59.483 52.381 44.58 44.58 34.78 2.34
4393 6918 0.228994 GAACTTATCGCGCGGTAAGC 59.771 55.000 45.57 32.92 43.95 3.09
4414 6939 3.841643 CAAGACCTTGCATTTGGATCAC 58.158 45.455 7.74 0.00 33.45 3.06
4415 6940 2.086869 AGACCTTGCATTTGGATCACG 58.913 47.619 7.74 0.00 0.00 4.35
4416 6941 1.812571 GACCTTGCATTTGGATCACGT 59.187 47.619 7.74 0.00 0.00 4.49
4417 6942 3.006940 GACCTTGCATTTGGATCACGTA 58.993 45.455 7.74 0.00 0.00 3.57
4418 6943 3.620488 ACCTTGCATTTGGATCACGTAT 58.380 40.909 7.74 0.00 0.00 3.06
4419 6944 3.378112 ACCTTGCATTTGGATCACGTATG 59.622 43.478 7.74 0.00 0.00 2.39
4420 6945 3.627123 CCTTGCATTTGGATCACGTATGA 59.373 43.478 0.00 0.00 39.83 2.15
4421 6946 4.260907 CCTTGCATTTGGATCACGTATGAG 60.261 45.833 0.00 0.00 38.57 2.90
4422 6947 2.613595 TGCATTTGGATCACGTATGAGC 59.386 45.455 0.00 0.00 40.71 4.26
4423 6948 2.613595 GCATTTGGATCACGTATGAGCA 59.386 45.455 0.00 0.00 43.37 4.26
4424 6949 3.065233 GCATTTGGATCACGTATGAGCAA 59.935 43.478 0.00 0.00 43.37 3.91
4425 6950 4.787563 GCATTTGGATCACGTATGAGCAAG 60.788 45.833 0.00 0.00 43.37 4.01
4426 6951 3.885724 TTGGATCACGTATGAGCAAGA 57.114 42.857 0.00 0.00 43.37 3.02
4427 6952 3.885724 TGGATCACGTATGAGCAAGAA 57.114 42.857 0.00 0.00 43.37 2.52
4428 6953 3.785486 TGGATCACGTATGAGCAAGAAG 58.215 45.455 0.00 0.00 43.37 2.85
4429 6954 2.541762 GGATCACGTATGAGCAAGAAGC 59.458 50.000 0.00 0.00 43.37 3.86
4446 6971 8.620533 GCAAGAAGCGACATTTTCTTTATAAT 57.379 30.769 0.00 0.00 40.62 1.28
4447 6972 9.716507 GCAAGAAGCGACATTTTCTTTATAATA 57.283 29.630 0.00 0.00 40.62 0.98
4463 6988 8.225107 TCTTTATAATATTTGATTACACCGCGC 58.775 33.333 0.00 0.00 0.00 6.86
4464 6989 5.933187 ATAATATTTGATTACACCGCGCA 57.067 34.783 8.75 0.00 0.00 6.09
4465 6990 4.624336 AATATTTGATTACACCGCGCAA 57.376 36.364 8.75 0.00 0.00 4.85
4466 6991 4.829064 ATATTTGATTACACCGCGCAAT 57.171 36.364 8.75 0.00 0.00 3.56
4467 6992 2.254918 TTTGATTACACCGCGCAATG 57.745 45.000 8.75 7.36 0.00 2.82
4742 7267 4.806640 CAAGGGCATTTACAGGAAACAT 57.193 40.909 0.00 0.00 0.00 2.71
4743 7268 5.913137 CAAGGGCATTTACAGGAAACATA 57.087 39.130 0.00 0.00 0.00 2.29
4744 7269 6.469782 CAAGGGCATTTACAGGAAACATAT 57.530 37.500 0.00 0.00 0.00 1.78
4745 7270 7.581213 CAAGGGCATTTACAGGAAACATATA 57.419 36.000 0.00 0.00 0.00 0.86
4746 7271 8.006298 CAAGGGCATTTACAGGAAACATATAA 57.994 34.615 0.00 0.00 0.00 0.98
4747 7272 7.582667 AGGGCATTTACAGGAAACATATAAC 57.417 36.000 0.00 0.00 0.00 1.89
4748 7273 6.549736 AGGGCATTTACAGGAAACATATAACC 59.450 38.462 0.00 0.00 0.00 2.85
4749 7274 6.549736 GGGCATTTACAGGAAACATATAACCT 59.450 38.462 0.00 0.00 0.00 3.50
4750 7275 7.255486 GGGCATTTACAGGAAACATATAACCTC 60.255 40.741 0.00 0.00 0.00 3.85
4751 7276 7.284489 GGCATTTACAGGAAACATATAACCTCA 59.716 37.037 0.00 0.00 0.00 3.86
4752 7277 8.682710 GCATTTACAGGAAACATATAACCTCAA 58.317 33.333 0.00 0.00 0.00 3.02
4754 7279 8.801882 TTTACAGGAAACATATAACCTCAAGG 57.198 34.615 0.00 0.00 42.17 3.61
4755 7280 5.193679 ACAGGAAACATATAACCTCAAGGC 58.806 41.667 0.00 0.00 39.32 4.35
4756 7281 4.580580 CAGGAAACATATAACCTCAAGGCC 59.419 45.833 0.00 0.00 39.32 5.19
4757 7282 4.229582 AGGAAACATATAACCTCAAGGCCA 59.770 41.667 5.01 0.00 39.32 5.36
4758 7283 4.338400 GGAAACATATAACCTCAAGGCCAC 59.662 45.833 5.01 0.00 39.32 5.01
4759 7284 3.577805 ACATATAACCTCAAGGCCACC 57.422 47.619 5.01 0.00 39.32 4.61
4760 7285 3.123273 ACATATAACCTCAAGGCCACCT 58.877 45.455 5.01 0.00 39.32 4.00
4761 7286 4.303794 ACATATAACCTCAAGGCCACCTA 58.696 43.478 5.01 0.00 39.32 3.08
4762 7287 4.348168 ACATATAACCTCAAGGCCACCTAG 59.652 45.833 5.01 0.00 39.32 3.02
4763 7288 1.580059 TAACCTCAAGGCCACCTAGG 58.420 55.000 7.41 7.41 35.91 3.02
4773 7298 3.575506 CCACCTAGGCAATGCTCAA 57.424 52.632 9.30 0.00 0.00 3.02
4774 7299 1.386533 CCACCTAGGCAATGCTCAAG 58.613 55.000 9.30 0.10 0.00 3.02
4775 7300 1.065199 CCACCTAGGCAATGCTCAAGA 60.065 52.381 9.30 0.00 0.00 3.02
4776 7301 2.422519 CCACCTAGGCAATGCTCAAGAT 60.423 50.000 9.30 0.00 0.00 2.40
4777 7302 2.877168 CACCTAGGCAATGCTCAAGATC 59.123 50.000 9.30 0.00 0.00 2.75
4778 7303 2.158696 ACCTAGGCAATGCTCAAGATCC 60.159 50.000 9.30 0.00 0.00 3.36
4779 7304 2.141517 CTAGGCAATGCTCAAGATCCG 58.858 52.381 4.82 0.00 0.00 4.18
4780 7305 0.543277 AGGCAATGCTCAAGATCCGA 59.457 50.000 4.82 0.00 0.00 4.55
4781 7306 1.065199 AGGCAATGCTCAAGATCCGAA 60.065 47.619 4.82 0.00 0.00 4.30
4782 7307 1.332997 GGCAATGCTCAAGATCCGAAG 59.667 52.381 4.82 0.00 0.00 3.79
4783 7308 2.283298 GCAATGCTCAAGATCCGAAGA 58.717 47.619 0.00 0.00 0.00 2.87
4784 7309 2.877168 GCAATGCTCAAGATCCGAAGAT 59.123 45.455 0.00 0.00 34.57 2.40
4800 7325 7.795482 TCCGAAGATCAAAGTAAAACAAAGA 57.205 32.000 0.00 0.00 0.00 2.52
4801 7326 7.861630 TCCGAAGATCAAAGTAAAACAAAGAG 58.138 34.615 0.00 0.00 0.00 2.85
4802 7327 7.713507 TCCGAAGATCAAAGTAAAACAAAGAGA 59.286 33.333 0.00 0.00 0.00 3.10
4803 7328 8.342634 CCGAAGATCAAAGTAAAACAAAGAGAA 58.657 33.333 0.00 0.00 0.00 2.87
4804 7329 9.716507 CGAAGATCAAAGTAAAACAAAGAGAAA 57.283 29.630 0.00 0.00 0.00 2.52
4810 7335 9.651913 TCAAAGTAAAACAAAGAGAAAATTGCT 57.348 25.926 0.00 0.00 0.00 3.91
4813 7338 9.875691 AAGTAAAACAAAGAGAAAATTGCTTCT 57.124 25.926 0.00 0.00 38.39 2.85
4818 7343 9.914131 AAACAAAGAGAAAATTGCTTCTATACC 57.086 29.630 0.00 0.00 35.76 2.73
4819 7344 8.635765 ACAAAGAGAAAATTGCTTCTATACCA 57.364 30.769 0.00 0.00 35.76 3.25
4820 7345 9.247861 ACAAAGAGAAAATTGCTTCTATACCAT 57.752 29.630 0.00 0.00 35.76 3.55
4821 7346 9.727627 CAAAGAGAAAATTGCTTCTATACCATC 57.272 33.333 0.00 0.00 35.76 3.51
4822 7347 7.721286 AGAGAAAATTGCTTCTATACCATCG 57.279 36.000 0.00 0.00 35.76 3.84
4823 7348 7.500992 AGAGAAAATTGCTTCTATACCATCGA 58.499 34.615 0.00 0.00 35.76 3.59
4824 7349 7.439655 AGAGAAAATTGCTTCTATACCATCGAC 59.560 37.037 0.00 0.00 35.76 4.20
4825 7350 7.047891 AGAAAATTGCTTCTATACCATCGACA 58.952 34.615 0.00 0.00 33.81 4.35
4826 7351 7.552687 AGAAAATTGCTTCTATACCATCGACAA 59.447 33.333 0.00 0.00 33.81 3.18
4827 7352 6.604735 AATTGCTTCTATACCATCGACAAC 57.395 37.500 0.00 0.00 0.00 3.32
4828 7353 4.054780 TGCTTCTATACCATCGACAACC 57.945 45.455 0.00 0.00 0.00 3.77
4829 7354 3.704566 TGCTTCTATACCATCGACAACCT 59.295 43.478 0.00 0.00 0.00 3.50
4830 7355 4.202121 TGCTTCTATACCATCGACAACCTC 60.202 45.833 0.00 0.00 0.00 3.85
4831 7356 4.038162 GCTTCTATACCATCGACAACCTCT 59.962 45.833 0.00 0.00 0.00 3.69
4832 7357 5.515797 TTCTATACCATCGACAACCTCTG 57.484 43.478 0.00 0.00 0.00 3.35
4833 7358 2.604046 ATACCATCGACAACCTCTGC 57.396 50.000 0.00 0.00 0.00 4.26
4834 7359 1.262417 TACCATCGACAACCTCTGCA 58.738 50.000 0.00 0.00 0.00 4.41
4835 7360 0.396435 ACCATCGACAACCTCTGCAA 59.604 50.000 0.00 0.00 0.00 4.08
4836 7361 1.003580 ACCATCGACAACCTCTGCAAT 59.996 47.619 0.00 0.00 0.00 3.56
4837 7362 2.236146 ACCATCGACAACCTCTGCAATA 59.764 45.455 0.00 0.00 0.00 1.90
4838 7363 2.868583 CCATCGACAACCTCTGCAATAG 59.131 50.000 0.00 0.00 0.00 1.73
4839 7364 2.010145 TCGACAACCTCTGCAATAGC 57.990 50.000 0.00 0.00 42.57 2.97
4840 7365 1.550524 TCGACAACCTCTGCAATAGCT 59.449 47.619 0.00 0.00 42.74 3.32
4841 7366 1.929836 CGACAACCTCTGCAATAGCTC 59.070 52.381 0.00 0.00 42.74 4.09
4842 7367 2.675032 CGACAACCTCTGCAATAGCTCA 60.675 50.000 0.00 0.00 42.74 4.26
4843 7368 3.539604 GACAACCTCTGCAATAGCTCAT 58.460 45.455 0.00 0.00 42.74 2.90
4844 7369 3.944015 GACAACCTCTGCAATAGCTCATT 59.056 43.478 0.00 0.00 42.74 2.57
4845 7370 4.338879 ACAACCTCTGCAATAGCTCATTT 58.661 39.130 0.00 0.00 42.74 2.32
4846 7371 4.157289 ACAACCTCTGCAATAGCTCATTTG 59.843 41.667 0.00 0.00 42.74 2.32
4847 7372 2.686915 ACCTCTGCAATAGCTCATTTGC 59.313 45.455 17.47 17.47 46.53 3.68
4848 7373 2.034305 CCTCTGCAATAGCTCATTTGCC 59.966 50.000 20.05 8.18 45.94 4.52
4849 7374 2.686405 CTCTGCAATAGCTCATTTGCCA 59.314 45.455 20.05 10.20 45.94 4.92
4850 7375 3.293337 TCTGCAATAGCTCATTTGCCAT 58.707 40.909 20.05 0.00 45.94 4.40
4851 7376 3.317149 TCTGCAATAGCTCATTTGCCATC 59.683 43.478 20.05 1.44 45.94 3.51
4852 7377 2.363038 TGCAATAGCTCATTTGCCATCC 59.637 45.455 20.05 1.16 45.94 3.51
4853 7378 2.363038 GCAATAGCTCATTTGCCATCCA 59.637 45.455 14.74 0.00 41.82 3.41
4854 7379 3.181473 GCAATAGCTCATTTGCCATCCAA 60.181 43.478 14.74 0.00 41.82 3.53
4855 7380 4.365723 CAATAGCTCATTTGCCATCCAAC 58.634 43.478 0.00 0.00 31.97 3.77
4856 7381 1.927487 AGCTCATTTGCCATCCAACA 58.073 45.000 0.00 0.00 31.97 3.33
4857 7382 2.250031 AGCTCATTTGCCATCCAACAA 58.750 42.857 0.00 0.00 31.97 2.83
4858 7383 2.633967 AGCTCATTTGCCATCCAACAAA 59.366 40.909 0.00 0.00 39.87 2.83
4859 7384 2.997986 GCTCATTTGCCATCCAACAAAG 59.002 45.455 0.00 0.00 39.01 2.77
4860 7385 2.997986 CTCATTTGCCATCCAACAAAGC 59.002 45.455 0.00 0.00 39.01 3.51
4861 7386 2.633967 TCATTTGCCATCCAACAAAGCT 59.366 40.909 0.00 0.00 39.01 3.74
4862 7387 2.529780 TTTGCCATCCAACAAAGCTG 57.470 45.000 0.00 0.00 32.28 4.24
4863 7388 0.033781 TTGCCATCCAACAAAGCTGC 59.966 50.000 0.00 0.00 0.00 5.25
4864 7389 1.114119 TGCCATCCAACAAAGCTGCA 61.114 50.000 1.02 0.00 0.00 4.41
4865 7390 0.389426 GCCATCCAACAAAGCTGCAG 60.389 55.000 10.11 10.11 0.00 4.41
4866 7391 0.963962 CCATCCAACAAAGCTGCAGT 59.036 50.000 16.64 0.00 0.00 4.40
4867 7392 1.336517 CCATCCAACAAAGCTGCAGTG 60.337 52.381 16.64 8.48 0.00 3.66
4868 7393 0.316204 ATCCAACAAAGCTGCAGTGC 59.684 50.000 16.64 8.58 0.00 4.40
4869 7394 0.752743 TCCAACAAAGCTGCAGTGCT 60.753 50.000 17.60 4.88 46.40 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.370445 CCCTCTGTCGAAGGCCCAT 61.370 63.158 0.00 0.00 0.00 4.00
1 2 3.003173 CCCTCTGTCGAAGGCCCA 61.003 66.667 0.00 0.00 0.00 5.36
2 3 3.787001 CCCCTCTGTCGAAGGCCC 61.787 72.222 0.00 0.00 0.00 5.80
3 4 1.838073 TTTCCCCTCTGTCGAAGGCC 61.838 60.000 0.00 0.00 0.00 5.19
10 1398 2.879103 TTGTGGATTTCCCCTCTGTC 57.121 50.000 0.00 0.00 34.29 3.51
32 1420 1.589993 CTATGTCGCTCGCCCACTG 60.590 63.158 0.00 0.00 0.00 3.66
39 1427 0.592500 ATCACGCACTATGTCGCTCG 60.593 55.000 0.00 0.00 0.00 5.03
42 1430 1.125021 GCATATCACGCACTATGTCGC 59.875 52.381 0.00 0.00 0.00 5.19
45 1433 1.339929 TCGGCATATCACGCACTATGT 59.660 47.619 0.00 0.00 0.00 2.29
54 1442 1.209128 CCGTCAGTTCGGCATATCAC 58.791 55.000 0.00 0.00 43.96 3.06
102 1490 3.367087 CGTATTCTCCGGACACTGTTTCT 60.367 47.826 0.00 0.00 0.00 2.52
149 1537 3.788227 TTGTTGAGTGGGCTAGATTGT 57.212 42.857 0.00 0.00 0.00 2.71
176 1564 0.888736 CCGTCACACATTTGGGCAGA 60.889 55.000 0.00 0.00 0.00 4.26
219 1607 4.011517 GGTTCCGCGACCTCCCAA 62.012 66.667 8.23 0.00 36.73 4.12
229 1617 2.585247 CGAGGATTCCGGTTCCGC 60.585 66.667 16.96 16.51 38.36 5.54
243 1631 0.249238 GCTATCTGCACTGACCCGAG 60.249 60.000 0.00 0.00 42.31 4.63
245 1633 4.427394 GCTATCTGCACTGACCCG 57.573 61.111 0.00 0.00 42.31 5.28
266 1654 2.224450 CGGTTGGGTTTTCCTAGTCTGT 60.224 50.000 0.00 0.00 40.46 3.41
267 1655 2.038033 TCGGTTGGGTTTTCCTAGTCTG 59.962 50.000 0.00 0.00 40.46 3.51
295 1683 4.141876 ATCCATGGGTTGGGGGCG 62.142 66.667 13.02 0.00 46.45 6.13
296 1684 2.123295 GATCCATGGGTTGGGGGC 60.123 66.667 13.02 0.00 46.45 5.80
297 1685 2.302517 CTGGATCCATGGGTTGGGGG 62.303 65.000 16.63 0.00 46.45 5.40
298 1686 1.231068 CTGGATCCATGGGTTGGGG 59.769 63.158 16.63 0.00 46.45 4.96
317 1706 8.996651 ATATAAGGGAAGGTACCAAATTCTTG 57.003 34.615 15.94 0.00 0.00 3.02
323 1712 9.901651 TGTAGATATATAAGGGAAGGTACCAAA 57.098 33.333 15.94 0.00 0.00 3.28
324 1713 9.901651 TTGTAGATATATAAGGGAAGGTACCAA 57.098 33.333 15.94 0.00 0.00 3.67
401 1790 8.584157 ACATTTACATCTGAAATGCCAAACTTA 58.416 29.630 7.77 0.00 44.59 2.24
403 1792 6.996509 ACATTTACATCTGAAATGCCAAACT 58.003 32.000 7.77 0.00 44.59 2.66
404 1793 7.171337 ACAACATTTACATCTGAAATGCCAAAC 59.829 33.333 7.77 0.00 44.59 2.93
406 1795 6.757237 ACAACATTTACATCTGAAATGCCAA 58.243 32.000 7.77 0.00 44.59 4.52
407 1796 6.343716 ACAACATTTACATCTGAAATGCCA 57.656 33.333 7.77 0.00 44.59 4.92
408 1797 7.092716 AGAACAACATTTACATCTGAAATGCC 58.907 34.615 7.77 0.00 44.59 4.40
409 1798 8.025445 AGAGAACAACATTTACATCTGAAATGC 58.975 33.333 7.77 0.00 44.59 3.56
426 1815 9.788960 ACTTTGATCAAGTTTTTAGAGAACAAC 57.211 29.630 8.41 0.00 43.89 3.32
441 1830 4.214437 GAGCGTCACAAACTTTGATCAAG 58.786 43.478 8.41 5.87 38.64 3.02
443 1832 2.220824 CGAGCGTCACAAACTTTGATCA 59.779 45.455 8.55 0.00 0.00 2.92
444 1833 2.475111 TCGAGCGTCACAAACTTTGATC 59.525 45.455 8.55 0.00 0.00 2.92
445 1834 2.221055 GTCGAGCGTCACAAACTTTGAT 59.779 45.455 8.55 0.00 0.00 2.57
446 1835 1.591158 GTCGAGCGTCACAAACTTTGA 59.409 47.619 8.55 0.00 0.00 2.69
447 1836 1.593006 AGTCGAGCGTCACAAACTTTG 59.407 47.619 0.00 0.00 0.00 2.77
450 1839 1.935933 AAAGTCGAGCGTCACAAACT 58.064 45.000 0.00 0.00 0.00 2.66
451 1840 2.732001 AAAAGTCGAGCGTCACAAAC 57.268 45.000 0.00 0.00 0.00 2.93
454 1843 4.861389 TTTTAAAAAGTCGAGCGTCACA 57.139 36.364 0.00 0.00 0.00 3.58
477 1866 6.208402 TGTTTCATAATGTTGCACATGTAGGT 59.792 34.615 0.00 0.00 37.97 3.08
479 1868 7.529158 TCTGTTTCATAATGTTGCACATGTAG 58.471 34.615 0.00 0.00 37.97 2.74
480 1869 7.390162 TCTCTGTTTCATAATGTTGCACATGTA 59.610 33.333 0.00 0.00 37.97 2.29
481 1870 6.207221 TCTCTGTTTCATAATGTTGCACATGT 59.793 34.615 0.00 0.00 37.97 3.21
482 1871 6.614160 TCTCTGTTTCATAATGTTGCACATG 58.386 36.000 3.08 0.00 37.97 3.21
483 1872 6.624423 GCTCTCTGTTTCATAATGTTGCACAT 60.624 38.462 0.00 0.00 41.31 3.21
484 1873 5.335113 GCTCTCTGTTTCATAATGTTGCACA 60.335 40.000 0.00 0.00 0.00 4.57
485 1874 5.091431 GCTCTCTGTTTCATAATGTTGCAC 58.909 41.667 0.00 0.00 0.00 4.57
486 1875 4.142838 CGCTCTCTGTTTCATAATGTTGCA 60.143 41.667 0.00 0.00 0.00 4.08
487 1876 4.142816 ACGCTCTCTGTTTCATAATGTTGC 60.143 41.667 0.00 0.00 0.00 4.17
488 1877 5.536554 ACGCTCTCTGTTTCATAATGTTG 57.463 39.130 0.00 0.00 0.00 3.33
491 1880 7.468922 TTCATACGCTCTCTGTTTCATAATG 57.531 36.000 0.00 0.00 0.00 1.90
492 1881 8.492673 TTTTCATACGCTCTCTGTTTCATAAT 57.507 30.769 0.00 0.00 0.00 1.28
494 1883 7.899178 TTTTTCATACGCTCTCTGTTTCATA 57.101 32.000 0.00 0.00 0.00 2.15
495 1884 6.801539 TTTTTCATACGCTCTCTGTTTCAT 57.198 33.333 0.00 0.00 0.00 2.57
496 1885 6.401047 CGATTTTTCATACGCTCTCTGTTTCA 60.401 38.462 0.00 0.00 0.00 2.69
497 1886 5.954349 CGATTTTTCATACGCTCTCTGTTTC 59.046 40.000 0.00 0.00 0.00 2.78
500 1889 3.307242 GCGATTTTTCATACGCTCTCTGT 59.693 43.478 0.00 0.00 46.06 3.41
501 1890 3.854881 GCGATTTTTCATACGCTCTCTG 58.145 45.455 0.00 0.00 46.06 3.35
508 1897 2.460041 CGTGCATGCGATTTTTCATACG 59.540 45.455 14.09 9.27 0.00 3.06
509 1898 2.214020 GCGTGCATGCGATTTTTCATAC 59.786 45.455 16.43 0.04 0.00 2.39
510 1899 2.097304 AGCGTGCATGCGATTTTTCATA 59.903 40.909 24.51 0.00 40.67 2.15
512 1901 0.240678 AGCGTGCATGCGATTTTTCA 59.759 45.000 24.51 0.00 40.67 2.69
513 1902 1.339711 AAGCGTGCATGCGATTTTTC 58.660 45.000 24.51 0.00 37.15 2.29
517 1906 1.670295 TGATAAAGCGTGCATGCGATT 59.330 42.857 24.51 23.42 42.48 3.34
518 1907 1.298602 TGATAAAGCGTGCATGCGAT 58.701 45.000 24.51 18.48 40.67 4.58
519 1908 1.082690 TTGATAAAGCGTGCATGCGA 58.917 45.000 24.51 14.62 40.67 5.10
521 1910 2.594321 TGTTTGATAAAGCGTGCATGC 58.406 42.857 23.58 23.58 0.00 4.06
522 1911 2.595536 GCTGTTTGATAAAGCGTGCATG 59.404 45.455 0.09 0.09 0.00 4.06
523 1912 2.228582 TGCTGTTTGATAAAGCGTGCAT 59.771 40.909 0.00 0.00 39.88 3.96
524 1913 1.606189 TGCTGTTTGATAAAGCGTGCA 59.394 42.857 0.00 0.00 39.88 4.57
525 1914 2.330231 TGCTGTTTGATAAAGCGTGC 57.670 45.000 0.00 0.00 39.88 5.34
527 1916 2.228582 TGCATGCTGTTTGATAAAGCGT 59.771 40.909 20.33 0.00 39.88 5.07
528 1917 2.850060 CTGCATGCTGTTTGATAAAGCG 59.150 45.455 20.33 0.00 39.88 4.68
529 1918 3.841643 ACTGCATGCTGTTTGATAAAGC 58.158 40.909 22.97 0.00 37.46 3.51
533 1922 9.506018 ACATATTATACTGCATGCTGTTTGATA 57.494 29.630 31.36 26.69 0.00 2.15
535 1924 7.806409 ACATATTATACTGCATGCTGTTTGA 57.194 32.000 31.36 21.60 0.00 2.69
536 1925 8.777413 AGTACATATTATACTGCATGCTGTTTG 58.223 33.333 31.36 20.54 31.54 2.93
537 1926 8.908786 AGTACATATTATACTGCATGCTGTTT 57.091 30.769 31.36 25.63 31.54 2.83
539 1928 7.604164 GGAAGTACATATTATACTGCATGCTGT 59.396 37.037 29.56 29.56 33.11 4.40
542 1931 8.553459 AAGGAAGTACATATTATACTGCATGC 57.447 34.615 11.82 11.82 33.11 4.06
545 1934 9.542462 GACAAAGGAAGTACATATTATACTGCA 57.458 33.333 0.00 0.00 33.11 4.41
556 1945 9.574516 ACTTATTTTGAGACAAAGGAAGTACAT 57.425 29.630 16.55 0.00 0.00 2.29
557 1946 8.836413 CACTTATTTTGAGACAAAGGAAGTACA 58.164 33.333 17.12 0.00 0.00 2.90
558 1947 9.052759 TCACTTATTTTGAGACAAAGGAAGTAC 57.947 33.333 17.12 0.00 0.00 2.73
560 1949 7.775561 AGTCACTTATTTTGAGACAAAGGAAGT 59.224 33.333 14.28 14.28 0.00 3.01
561 1950 8.159344 AGTCACTTATTTTGAGACAAAGGAAG 57.841 34.615 0.00 0.00 0.00 3.46
563 1952 7.279615 TGAGTCACTTATTTTGAGACAAAGGA 58.720 34.615 0.00 0.00 0.00 3.36
564 1953 7.496529 TGAGTCACTTATTTTGAGACAAAGG 57.503 36.000 0.00 0.00 0.00 3.11
565 1954 8.616076 ACTTGAGTCACTTATTTTGAGACAAAG 58.384 33.333 0.00 0.00 34.29 2.77
566 1955 8.506168 ACTTGAGTCACTTATTTTGAGACAAA 57.494 30.769 0.00 0.00 0.00 2.83
567 1956 8.506168 AACTTGAGTCACTTATTTTGAGACAA 57.494 30.769 0.00 0.00 0.00 3.18
568 1957 8.397906 CAAACTTGAGTCACTTATTTTGAGACA 58.602 33.333 0.00 0.00 0.00 3.41
569 1958 8.398665 ACAAACTTGAGTCACTTATTTTGAGAC 58.601 33.333 11.12 0.00 0.00 3.36
570 1959 8.506168 ACAAACTTGAGTCACTTATTTTGAGA 57.494 30.769 11.12 0.00 0.00 3.27
571 1960 9.651718 GTACAAACTTGAGTCACTTATTTTGAG 57.348 33.333 11.12 0.00 0.00 3.02
572 1961 9.391006 AGTACAAACTTGAGTCACTTATTTTGA 57.609 29.630 11.12 0.00 29.00 2.69
578 1967 9.692749 CTCATTAGTACAAACTTGAGTCACTTA 57.307 33.333 0.00 0.00 36.47 2.24
579 1968 7.657761 CCTCATTAGTACAAACTTGAGTCACTT 59.342 37.037 0.00 0.00 38.27 3.16
580 1969 7.155328 CCTCATTAGTACAAACTTGAGTCACT 58.845 38.462 0.00 0.00 38.27 3.41
581 1970 6.369065 CCCTCATTAGTACAAACTTGAGTCAC 59.631 42.308 0.00 0.00 38.27 3.67
582 1971 6.269077 TCCCTCATTAGTACAAACTTGAGTCA 59.731 38.462 0.00 0.00 38.27 3.41
583 1972 6.698380 TCCCTCATTAGTACAAACTTGAGTC 58.302 40.000 0.00 0.00 38.27 3.36
584 1973 6.270231 ACTCCCTCATTAGTACAAACTTGAGT 59.730 38.462 0.00 0.00 38.27 3.41
585 1974 6.702329 ACTCCCTCATTAGTACAAACTTGAG 58.298 40.000 0.00 0.41 39.08 3.02
586 1975 6.681729 ACTCCCTCATTAGTACAAACTTGA 57.318 37.500 0.00 0.00 37.15 3.02
587 1976 9.449719 AAATACTCCCTCATTAGTACAAACTTG 57.550 33.333 0.00 0.00 37.15 3.16
588 1977 9.449719 CAAATACTCCCTCATTAGTACAAACTT 57.550 33.333 0.00 0.00 37.15 2.66
589 1978 7.553044 GCAAATACTCCCTCATTAGTACAAACT 59.447 37.037 0.00 0.00 39.91 2.66
590 1979 7.465513 CGCAAATACTCCCTCATTAGTACAAAC 60.466 40.741 0.00 0.00 31.30 2.93
591 1980 6.537301 CGCAAATACTCCCTCATTAGTACAAA 59.463 38.462 0.00 0.00 31.30 2.83
592 1981 6.046593 CGCAAATACTCCCTCATTAGTACAA 58.953 40.000 0.00 0.00 31.30 2.41
593 1982 5.361571 TCGCAAATACTCCCTCATTAGTACA 59.638 40.000 0.00 0.00 31.30 2.90
594 1983 5.839621 TCGCAAATACTCCCTCATTAGTAC 58.160 41.667 0.00 0.00 31.30 2.73
595 1984 6.127281 TGTTCGCAAATACTCCCTCATTAGTA 60.127 38.462 0.00 0.00 32.98 1.82
596 1985 5.116882 GTTCGCAAATACTCCCTCATTAGT 58.883 41.667 0.00 0.00 0.00 2.24
597 1986 5.116180 TGTTCGCAAATACTCCCTCATTAG 58.884 41.667 0.00 0.00 0.00 1.73
598 1987 5.092554 TGTTCGCAAATACTCCCTCATTA 57.907 39.130 0.00 0.00 0.00 1.90
599 1988 3.941483 CTGTTCGCAAATACTCCCTCATT 59.059 43.478 0.00 0.00 0.00 2.57
600 1989 3.535561 CTGTTCGCAAATACTCCCTCAT 58.464 45.455 0.00 0.00 0.00 2.90
601 1990 2.935238 GCTGTTCGCAAATACTCCCTCA 60.935 50.000 0.00 0.00 38.92 3.86
602 1991 1.666189 GCTGTTCGCAAATACTCCCTC 59.334 52.381 0.00 0.00 38.92 4.30
603 1992 1.279271 AGCTGTTCGCAAATACTCCCT 59.721 47.619 0.00 0.00 42.61 4.20
604 1993 1.398390 CAGCTGTTCGCAAATACTCCC 59.602 52.381 5.25 0.00 42.61 4.30
605 1994 2.076863 ACAGCTGTTCGCAAATACTCC 58.923 47.619 15.25 0.00 42.61 3.85
606 1995 3.927142 ACTACAGCTGTTCGCAAATACTC 59.073 43.478 27.06 0.00 42.61 2.59
607 1996 3.679980 CACTACAGCTGTTCGCAAATACT 59.320 43.478 27.06 0.00 42.61 2.12
608 1997 3.432252 ACACTACAGCTGTTCGCAAATAC 59.568 43.478 27.06 0.00 42.61 1.89
609 1998 3.659786 ACACTACAGCTGTTCGCAAATA 58.340 40.909 27.06 2.69 42.61 1.40
610 1999 2.494059 ACACTACAGCTGTTCGCAAAT 58.506 42.857 27.06 0.00 42.61 2.32
611 2000 1.948104 ACACTACAGCTGTTCGCAAA 58.052 45.000 27.06 4.38 42.61 3.68
612 2001 2.804697 TACACTACAGCTGTTCGCAA 57.195 45.000 27.06 5.23 42.61 4.85
613 2002 2.295070 TCTTACACTACAGCTGTTCGCA 59.705 45.455 27.06 5.67 42.61 5.10
614 2003 2.942710 TCTTACACTACAGCTGTTCGC 58.057 47.619 27.06 0.00 39.57 4.70
615 2004 4.201628 GCAATCTTACACTACAGCTGTTCG 60.202 45.833 27.06 18.56 0.00 3.95
697 3017 1.320507 AACGCCACGGGTTGTTATTT 58.679 45.000 0.00 0.00 37.32 1.40
706 3026 4.383602 CGCTTCAAACGCCACGGG 62.384 66.667 0.00 0.00 0.00 5.28
780 3102 0.030908 GTCTCGCCGGGAATAGACTG 59.969 60.000 2.18 0.00 36.32 3.51
824 3146 1.142262 CATGTGATGGATGGAGCAGGA 59.858 52.381 0.00 0.00 0.00 3.86
924 3246 4.456806 GGAGACGCACAACAACCT 57.543 55.556 0.00 0.00 0.00 3.50
954 3280 1.286257 TCCTCTTCTCTAGCCAGCTCA 59.714 52.381 0.00 0.00 0.00 4.26
960 3286 1.039856 CTGCCTCCTCTTCTCTAGCC 58.960 60.000 0.00 0.00 0.00 3.93
961 3287 1.039856 CCTGCCTCCTCTTCTCTAGC 58.960 60.000 0.00 0.00 0.00 3.42
976 3307 2.126071 TCGTAGACTTGCGCCTGC 60.126 61.111 4.18 0.00 43.20 4.85
978 3309 2.182030 GCTCGTAGACTTGCGCCT 59.818 61.111 4.18 0.00 32.07 5.52
984 3315 1.095600 TCATCGCTGCTCGTAGACTT 58.904 50.000 0.00 0.00 39.67 3.01
986 3317 1.064208 TCTTCATCGCTGCTCGTAGAC 59.936 52.381 0.00 0.00 39.67 2.59
987 3318 1.379527 TCTTCATCGCTGCTCGTAGA 58.620 50.000 0.00 0.00 39.67 2.59
988 3319 2.115595 CTTCTTCATCGCTGCTCGTAG 58.884 52.381 0.00 0.00 39.67 3.51
990 3321 1.080995 GCTTCTTCATCGCTGCTCGT 61.081 55.000 0.00 0.00 39.67 4.18
991 3322 1.080435 TGCTTCTTCATCGCTGCTCG 61.080 55.000 0.00 0.00 40.15 5.03
992 3323 0.373024 GTGCTTCTTCATCGCTGCTC 59.627 55.000 0.00 0.00 0.00 4.26
993 3324 0.321034 TGTGCTTCTTCATCGCTGCT 60.321 50.000 0.00 0.00 0.00 4.24
994 3325 0.096628 CTGTGCTTCTTCATCGCTGC 59.903 55.000 0.00 0.00 0.00 5.25
995 3326 0.096628 GCTGTGCTTCTTCATCGCTG 59.903 55.000 0.00 0.00 0.00 5.18
996 3327 0.321034 TGCTGTGCTTCTTCATCGCT 60.321 50.000 0.00 0.00 0.00 4.93
1151 3501 1.164662 TCGATCGAGATGGACGACCC 61.165 60.000 15.15 0.00 42.37 4.46
1152 3502 0.875728 ATCGATCGAGATGGACGACC 59.124 55.000 23.84 0.00 42.37 4.79
1153 3503 1.135916 GGATCGATCGAGATGGACGAC 60.136 57.143 23.84 5.89 42.37 4.34
1176 3531 7.225784 TCTAGATGCAAGATAGCTAAGAAGG 57.774 40.000 0.00 0.00 34.99 3.46
1187 3542 4.437239 CTGGTTCGTTCTAGATGCAAGAT 58.563 43.478 0.00 0.00 0.00 2.40
1188 3543 3.368427 CCTGGTTCGTTCTAGATGCAAGA 60.368 47.826 0.00 0.00 0.00 3.02
1190 3545 2.935238 GCCTGGTTCGTTCTAGATGCAA 60.935 50.000 0.00 0.00 0.00 4.08
1192 3547 1.291132 GCCTGGTTCGTTCTAGATGC 58.709 55.000 0.00 0.00 0.00 3.91
1193 3548 1.802880 CGGCCTGGTTCGTTCTAGATG 60.803 57.143 0.00 0.00 0.00 2.90
1195 3550 1.601419 CCGGCCTGGTTCGTTCTAGA 61.601 60.000 0.00 0.00 0.00 2.43
1196 3551 1.153628 CCGGCCTGGTTCGTTCTAG 60.154 63.158 0.00 0.00 0.00 2.43
1237 3595 5.692814 TCAATCAAGCTGATCAAAAGTTCG 58.307 37.500 0.00 0.00 35.76 3.95
1240 3598 6.367969 GCAATTCAATCAAGCTGATCAAAAGT 59.632 34.615 0.00 0.00 35.76 2.66
1300 3661 3.147629 CATCCCCAATCTCAAGATGCTC 58.852 50.000 0.00 0.00 34.49 4.26
1321 3684 4.748102 TGATTGAACCAGTCGTACAAACTC 59.252 41.667 0.00 0.00 0.00 3.01
1369 3732 4.442706 ACTGCATACTGATTAAGTTCGGG 58.557 43.478 0.00 0.00 40.56 5.14
1487 3861 3.490933 CCAACCGATCGTGATGTGTATCT 60.491 47.826 15.09 0.00 34.31 1.98
1489 3863 2.167693 ACCAACCGATCGTGATGTGTAT 59.832 45.455 15.09 0.00 0.00 2.29
1542 3919 0.107703 ACCGTCCGATCCTACGTACA 60.108 55.000 12.05 0.00 37.40 2.90
1546 3923 1.162181 TGCTACCGTCCGATCCTACG 61.162 60.000 7.36 7.36 38.80 3.51
1547 3924 0.592148 CTGCTACCGTCCGATCCTAC 59.408 60.000 0.00 0.00 0.00 3.18
1548 3925 1.170919 GCTGCTACCGTCCGATCCTA 61.171 60.000 0.00 0.00 0.00 2.94
1549 3926 2.491022 GCTGCTACCGTCCGATCCT 61.491 63.158 0.00 0.00 0.00 3.24
1584 3967 6.295857 GCTGTACTTGTTTTTGTGTTTGTTG 58.704 36.000 0.00 0.00 0.00 3.33
1616 3999 0.321653 GTCAGCCTTTGGACGGATGT 60.322 55.000 0.00 0.00 38.96 3.06
1621 4004 0.817634 TGGTTGTCAGCCTTTGGACG 60.818 55.000 7.30 0.00 36.83 4.79
1639 4022 2.337583 ACTGTACAGCATGCGTACTTG 58.662 47.619 32.53 28.25 42.53 3.16
1704 4087 4.456911 TGAAAGTAGAGCCAAATTGCAGAG 59.543 41.667 0.00 0.00 0.00 3.35
1705 4088 4.397420 TGAAAGTAGAGCCAAATTGCAGA 58.603 39.130 0.00 0.00 0.00 4.26
1706 4089 4.771590 TGAAAGTAGAGCCAAATTGCAG 57.228 40.909 0.00 0.00 0.00 4.41
1757 4149 2.440539 AGCACGTGTTAGACTGGAAG 57.559 50.000 18.38 0.00 42.29 3.46
1790 4191 6.878317 TGGTAGAAATGAACGAATCTCTGAT 58.122 36.000 0.00 0.00 0.00 2.90
1858 4274 6.773638 AGGAATAATTGCAGTAGGAGTATGG 58.226 40.000 0.00 0.00 0.00 2.74
1871 4287 6.460676 CCAAGGAACATCAGAGGAATAATTGC 60.461 42.308 0.00 0.00 0.00 3.56
1873 4289 6.973642 TCCAAGGAACATCAGAGGAATAATT 58.026 36.000 0.00 0.00 0.00 1.40
1874 4290 6.581388 TCCAAGGAACATCAGAGGAATAAT 57.419 37.500 0.00 0.00 0.00 1.28
1886 4302 4.170468 AGCCGAATAATCCAAGGAACAT 57.830 40.909 0.00 0.00 0.00 2.71
1897 4313 5.091261 ACAGAGTGAGAAAGCCGAATAAT 57.909 39.130 0.00 0.00 0.00 1.28
1898 4314 4.537135 ACAGAGTGAGAAAGCCGAATAA 57.463 40.909 0.00 0.00 0.00 1.40
1899 4315 4.537135 AACAGAGTGAGAAAGCCGAATA 57.463 40.909 0.00 0.00 0.00 1.75
1970 4390 1.394917 CCGCTCTTGGATCGTTTGAAG 59.605 52.381 0.00 0.00 0.00 3.02
1996 4416 2.690452 CCGAGAAGGAGGGGGAGA 59.310 66.667 0.00 0.00 45.00 3.71
2015 4435 2.896443 GCCGAGAAGGAGGGTGAG 59.104 66.667 0.00 0.00 45.00 3.51
2018 4438 3.069318 GACGCCGAGAAGGAGGGT 61.069 66.667 0.00 0.00 44.78 4.34
2148 4568 4.189188 GAGAAGCGGCGGTAGCGA 62.189 66.667 20.16 0.00 46.35 4.93
2198 4618 3.123674 CTGACCTAGCACCACGAAC 57.876 57.895 0.00 0.00 0.00 3.95
2214 4634 1.421480 TGGAGATGGAGATGGAGCTG 58.579 55.000 0.00 0.00 0.00 4.24
2417 4861 1.521681 GTAGCTGGTGCCGATCCAC 60.522 63.158 0.00 0.00 40.80 4.02
2627 5096 2.689034 GCCACCAGGTAGAGCCCT 60.689 66.667 0.00 0.00 38.26 5.19
3459 5943 3.032609 CGCGATCGCCATGGAGAC 61.033 66.667 32.63 13.19 37.98 3.36
3914 6413 8.646900 ACTATATGAAGGACCAAAAAGCAAAAA 58.353 29.630 0.00 0.00 0.00 1.94
3915 6414 8.189119 ACTATATGAAGGACCAAAAAGCAAAA 57.811 30.769 0.00 0.00 0.00 2.44
3916 6415 7.775053 ACTATATGAAGGACCAAAAAGCAAA 57.225 32.000 0.00 0.00 0.00 3.68
3917 6416 7.450014 TCAACTATATGAAGGACCAAAAAGCAA 59.550 33.333 0.00 0.00 0.00 3.91
3918 6417 6.945435 TCAACTATATGAAGGACCAAAAAGCA 59.055 34.615 0.00 0.00 0.00 3.91
3919 6418 7.121315 ACTCAACTATATGAAGGACCAAAAAGC 59.879 37.037 0.00 0.00 0.00 3.51
3920 6419 8.567285 ACTCAACTATATGAAGGACCAAAAAG 57.433 34.615 0.00 0.00 0.00 2.27
3924 6423 9.613428 CAAATACTCAACTATATGAAGGACCAA 57.387 33.333 0.00 0.00 0.00 3.67
3925 6424 8.988060 TCAAATACTCAACTATATGAAGGACCA 58.012 33.333 0.00 0.00 0.00 4.02
3939 6438 6.304126 CGGTGTGTGTAATCAAATACTCAAC 58.696 40.000 0.00 0.00 32.81 3.18
3950 6449 2.414029 CCATTGTGCGGTGTGTGTAATC 60.414 50.000 0.00 0.00 0.00 1.75
4063 6572 0.694771 TCTTGAGCACTGCCCTTGAT 59.305 50.000 0.00 0.00 0.00 2.57
4064 6573 0.694771 ATCTTGAGCACTGCCCTTGA 59.305 50.000 0.00 0.00 0.00 3.02
4065 6574 1.093159 GATCTTGAGCACTGCCCTTG 58.907 55.000 0.00 0.00 0.00 3.61
4066 6575 0.034670 GGATCTTGAGCACTGCCCTT 60.035 55.000 0.00 0.00 0.00 3.95
4067 6576 1.203441 TGGATCTTGAGCACTGCCCT 61.203 55.000 0.00 0.00 0.00 5.19
4068 6577 0.106819 ATGGATCTTGAGCACTGCCC 60.107 55.000 0.00 0.00 0.00 5.36
4081 6590 7.224557 GCATTGGGTATTTGTTTTACATGGATC 59.775 37.037 0.00 0.00 0.00 3.36
4087 6596 7.770897 ACTTTTGCATTGGGTATTTGTTTTACA 59.229 29.630 0.00 0.00 0.00 2.41
4165 6688 5.214417 CAGAACTGAACAATTCGATGCAAA 58.786 37.500 0.00 0.00 0.00 3.68
4189 6713 2.299867 CCTGGTGAACTTTTTCATGGGG 59.700 50.000 0.00 0.00 43.72 4.96
4209 6733 2.988684 TTGGTCCAATGCACGGCC 60.989 61.111 0.00 0.00 0.00 6.13
4213 6737 2.482864 CAAAACCTTGGTCCAATGCAC 58.517 47.619 4.34 0.00 0.00 4.57
4325 6850 7.659390 CCATGAAATTGCCTTACCTTGTAAAAA 59.341 33.333 0.00 0.00 0.00 1.94
4326 6851 7.158021 CCATGAAATTGCCTTACCTTGTAAAA 58.842 34.615 0.00 0.00 0.00 1.52
4327 6852 6.295575 CCCATGAAATTGCCTTACCTTGTAAA 60.296 38.462 0.00 0.00 0.00 2.01
4328 6853 5.186797 CCCATGAAATTGCCTTACCTTGTAA 59.813 40.000 0.00 0.00 0.00 2.41
4329 6854 4.709397 CCCATGAAATTGCCTTACCTTGTA 59.291 41.667 0.00 0.00 0.00 2.41
4330 6855 3.515104 CCCATGAAATTGCCTTACCTTGT 59.485 43.478 0.00 0.00 0.00 3.16
4331 6856 3.118665 CCCCATGAAATTGCCTTACCTTG 60.119 47.826 0.00 0.00 0.00 3.61
4332 6857 3.106827 CCCCATGAAATTGCCTTACCTT 58.893 45.455 0.00 0.00 0.00 3.50
4333 6858 2.044353 ACCCCATGAAATTGCCTTACCT 59.956 45.455 0.00 0.00 0.00 3.08
4334 6859 2.466846 ACCCCATGAAATTGCCTTACC 58.533 47.619 0.00 0.00 0.00 2.85
4335 6860 3.383505 GGTACCCCATGAAATTGCCTTAC 59.616 47.826 0.00 0.00 0.00 2.34
4336 6861 3.011821 TGGTACCCCATGAAATTGCCTTA 59.988 43.478 10.07 0.00 35.17 2.69
4337 6862 2.225496 TGGTACCCCATGAAATTGCCTT 60.225 45.455 10.07 0.00 35.17 4.35
4338 6863 1.360852 TGGTACCCCATGAAATTGCCT 59.639 47.619 10.07 0.00 35.17 4.75
4339 6864 1.859302 TGGTACCCCATGAAATTGCC 58.141 50.000 10.07 0.00 35.17 4.52
4340 6865 3.096092 TCTTGGTACCCCATGAAATTGC 58.904 45.455 10.07 0.00 40.80 3.56
4341 6866 5.450412 CGAATCTTGGTACCCCATGAAATTG 60.450 44.000 10.07 0.00 45.15 2.32
4342 6867 4.644685 CGAATCTTGGTACCCCATGAAATT 59.355 41.667 10.07 0.00 45.15 1.82
4343 6868 4.207165 CGAATCTTGGTACCCCATGAAAT 58.793 43.478 10.07 0.00 45.15 2.17
4344 6869 3.616219 CGAATCTTGGTACCCCATGAAA 58.384 45.455 10.07 0.00 45.15 2.69
4345 6870 2.682563 GCGAATCTTGGTACCCCATGAA 60.683 50.000 10.07 0.00 45.15 2.57
4346 6871 1.134220 GCGAATCTTGGTACCCCATGA 60.134 52.381 10.07 2.60 45.82 3.07
4347 6872 1.308998 GCGAATCTTGGTACCCCATG 58.691 55.000 10.07 0.00 41.49 3.66
4348 6873 0.179056 CGCGAATCTTGGTACCCCAT 60.179 55.000 10.07 0.00 41.49 4.00
4349 6874 1.219664 CGCGAATCTTGGTACCCCA 59.780 57.895 10.07 0.00 39.65 4.96
4350 6875 1.523032 CCGCGAATCTTGGTACCCC 60.523 63.158 8.23 0.00 0.00 4.95
4351 6876 0.461135 TACCGCGAATCTTGGTACCC 59.539 55.000 8.23 0.00 37.20 3.69
4352 6877 1.929169 GTTACCGCGAATCTTGGTACC 59.071 52.381 8.23 4.43 37.95 3.34
4353 6878 2.601763 CAGTTACCGCGAATCTTGGTAC 59.398 50.000 8.23 0.00 37.95 3.34
4354 6879 2.492881 TCAGTTACCGCGAATCTTGGTA 59.507 45.455 8.23 0.00 37.20 3.25
4355 6880 1.274167 TCAGTTACCGCGAATCTTGGT 59.726 47.619 8.23 0.00 39.80 3.67
4356 6881 2.004583 TCAGTTACCGCGAATCTTGG 57.995 50.000 8.23 0.00 0.00 3.61
4357 6882 2.993899 AGTTCAGTTACCGCGAATCTTG 59.006 45.455 8.23 0.00 0.00 3.02
4358 6883 3.314541 AGTTCAGTTACCGCGAATCTT 57.685 42.857 8.23 0.00 0.00 2.40
4359 6884 3.314541 AAGTTCAGTTACCGCGAATCT 57.685 42.857 8.23 0.00 0.00 2.40
4360 6885 4.085721 CGATAAGTTCAGTTACCGCGAATC 60.086 45.833 8.23 0.00 0.00 2.52
4361 6886 3.795101 CGATAAGTTCAGTTACCGCGAAT 59.205 43.478 8.23 0.00 0.00 3.34
4362 6887 3.173599 CGATAAGTTCAGTTACCGCGAA 58.826 45.455 8.23 0.00 0.00 4.70
4363 6888 2.789208 CGATAAGTTCAGTTACCGCGA 58.211 47.619 8.23 0.00 0.00 5.87
4364 6889 1.254570 GCGATAAGTTCAGTTACCGCG 59.745 52.381 0.00 0.00 32.24 6.46
4365 6890 1.254570 CGCGATAAGTTCAGTTACCGC 59.745 52.381 0.00 3.39 38.27 5.68
4366 6891 1.254570 GCGCGATAAGTTCAGTTACCG 59.745 52.381 12.10 0.00 0.00 4.02
4367 6892 1.254570 CGCGCGATAAGTTCAGTTACC 59.745 52.381 28.94 0.00 0.00 2.85
4368 6893 1.254570 CCGCGCGATAAGTTCAGTTAC 59.745 52.381 34.63 0.00 0.00 2.50
4369 6894 1.135315 ACCGCGCGATAAGTTCAGTTA 60.135 47.619 34.63 0.00 0.00 2.24
4370 6895 0.389426 ACCGCGCGATAAGTTCAGTT 60.389 50.000 34.63 0.00 0.00 3.16
4371 6896 0.452987 TACCGCGCGATAAGTTCAGT 59.547 50.000 34.63 19.25 0.00 3.41
4372 6897 1.517276 CTTACCGCGCGATAAGTTCAG 59.483 52.381 31.32 14.80 0.00 3.02
4373 6898 1.552226 CTTACCGCGCGATAAGTTCA 58.448 50.000 31.32 3.92 0.00 3.18
4374 6899 0.228994 GCTTACCGCGCGATAAGTTC 59.771 55.000 36.79 22.26 32.07 3.01
4375 6900 0.458889 TGCTTACCGCGCGATAAGTT 60.459 50.000 36.79 15.49 43.27 2.66
4376 6901 0.458889 TTGCTTACCGCGCGATAAGT 60.459 50.000 36.79 25.95 43.27 2.24
4377 6902 0.229753 CTTGCTTACCGCGCGATAAG 59.770 55.000 34.36 34.36 43.27 1.73
4378 6903 0.179132 TCTTGCTTACCGCGCGATAA 60.179 50.000 34.63 25.61 43.27 1.75
4379 6904 0.868602 GTCTTGCTTACCGCGCGATA 60.869 55.000 34.63 18.43 43.27 2.92
4380 6905 2.165301 GTCTTGCTTACCGCGCGAT 61.165 57.895 34.63 19.98 43.27 4.58
4381 6906 2.807895 GTCTTGCTTACCGCGCGA 60.808 61.111 34.63 9.90 43.27 5.87
4382 6907 3.849953 GGTCTTGCTTACCGCGCG 61.850 66.667 25.67 25.67 43.27 6.86
4383 6908 2.033194 AAGGTCTTGCTTACCGCGC 61.033 57.895 0.00 0.00 42.15 6.86
4384 6909 1.787847 CAAGGTCTTGCTTACCGCG 59.212 57.895 0.00 0.00 42.15 6.46
4393 6918 3.671433 CGTGATCCAAATGCAAGGTCTTG 60.671 47.826 6.36 6.36 43.14 3.02
4394 6919 2.489329 CGTGATCCAAATGCAAGGTCTT 59.511 45.455 0.00 0.00 0.00 3.01
4395 6920 2.086869 CGTGATCCAAATGCAAGGTCT 58.913 47.619 0.00 0.00 0.00 3.85
4396 6921 1.812571 ACGTGATCCAAATGCAAGGTC 59.187 47.619 0.00 0.00 0.00 3.85
4397 6922 1.909700 ACGTGATCCAAATGCAAGGT 58.090 45.000 0.00 0.00 0.00 3.50
4398 6923 3.627123 TCATACGTGATCCAAATGCAAGG 59.373 43.478 0.00 0.00 0.00 3.61
4399 6924 4.787563 GCTCATACGTGATCCAAATGCAAG 60.788 45.833 0.00 0.00 32.98 4.01
4400 6925 3.065233 GCTCATACGTGATCCAAATGCAA 59.935 43.478 0.00 0.00 32.98 4.08
4401 6926 2.613595 GCTCATACGTGATCCAAATGCA 59.386 45.455 0.00 0.00 32.98 3.96
4402 6927 2.613595 TGCTCATACGTGATCCAAATGC 59.386 45.455 0.00 0.00 32.98 3.56
4403 6928 4.571984 TCTTGCTCATACGTGATCCAAATG 59.428 41.667 0.00 0.00 32.98 2.32
4404 6929 4.769688 TCTTGCTCATACGTGATCCAAAT 58.230 39.130 0.00 0.00 32.98 2.32
4405 6930 4.200838 TCTTGCTCATACGTGATCCAAA 57.799 40.909 0.00 0.00 32.98 3.28
4406 6931 3.885724 TCTTGCTCATACGTGATCCAA 57.114 42.857 0.00 0.00 32.98 3.53
4407 6932 3.785486 CTTCTTGCTCATACGTGATCCA 58.215 45.455 0.00 0.00 32.98 3.41
4408 6933 2.541762 GCTTCTTGCTCATACGTGATCC 59.458 50.000 0.00 0.00 38.95 3.36
4409 6934 2.217393 CGCTTCTTGCTCATACGTGATC 59.783 50.000 0.00 0.00 40.11 2.92
4410 6935 2.159240 TCGCTTCTTGCTCATACGTGAT 60.159 45.455 0.00 0.00 40.11 3.06
4411 6936 1.201414 TCGCTTCTTGCTCATACGTGA 59.799 47.619 0.00 0.00 40.11 4.35
4412 6937 1.321743 GTCGCTTCTTGCTCATACGTG 59.678 52.381 0.00 0.00 40.11 4.49
4413 6938 1.067846 TGTCGCTTCTTGCTCATACGT 60.068 47.619 0.00 0.00 40.11 3.57
4414 6939 1.629013 TGTCGCTTCTTGCTCATACG 58.371 50.000 0.00 0.00 40.11 3.06
4415 6940 4.606457 AAATGTCGCTTCTTGCTCATAC 57.394 40.909 0.00 0.00 40.11 2.39
4416 6941 4.937620 AGAAAATGTCGCTTCTTGCTCATA 59.062 37.500 0.00 0.00 40.11 2.15
4417 6942 3.755378 AGAAAATGTCGCTTCTTGCTCAT 59.245 39.130 0.00 0.00 40.11 2.90
4418 6943 3.141398 AGAAAATGTCGCTTCTTGCTCA 58.859 40.909 0.00 0.00 40.11 4.26
4419 6944 3.820777 AGAAAATGTCGCTTCTTGCTC 57.179 42.857 0.00 0.00 40.11 4.26
4420 6945 4.574599 AAAGAAAATGTCGCTTCTTGCT 57.425 36.364 0.00 0.00 40.23 3.91
4421 6946 8.620533 ATTATAAAGAAAATGTCGCTTCTTGC 57.379 30.769 0.00 0.00 40.23 4.01
4437 6962 8.225107 GCGCGGTGTAATCAAATATTATAAAGA 58.775 33.333 8.83 0.00 0.00 2.52
4438 6963 8.012809 TGCGCGGTGTAATCAAATATTATAAAG 58.987 33.333 8.83 0.00 0.00 1.85
4439 6964 7.862648 TGCGCGGTGTAATCAAATATTATAAA 58.137 30.769 8.83 0.00 0.00 1.40
4440 6965 7.422878 TGCGCGGTGTAATCAAATATTATAA 57.577 32.000 8.83 0.00 0.00 0.98
4441 6966 7.422878 TTGCGCGGTGTAATCAAATATTATA 57.577 32.000 8.83 0.00 0.00 0.98
4442 6967 5.933187 TGCGCGGTGTAATCAAATATTAT 57.067 34.783 8.83 0.00 0.00 1.28
4443 6968 5.736486 TTGCGCGGTGTAATCAAATATTA 57.264 34.783 8.83 0.00 0.00 0.98
4444 6969 4.624336 TTGCGCGGTGTAATCAAATATT 57.376 36.364 8.83 0.00 0.00 1.28
4445 6970 4.536065 CATTGCGCGGTGTAATCAAATAT 58.464 39.130 8.83 0.00 29.63 1.28
4446 6971 3.946402 CATTGCGCGGTGTAATCAAATA 58.054 40.909 8.83 0.00 29.63 1.40
4447 6972 2.796304 CATTGCGCGGTGTAATCAAAT 58.204 42.857 8.83 0.00 29.63 2.32
4448 6973 2.254918 CATTGCGCGGTGTAATCAAA 57.745 45.000 8.83 0.00 29.63 2.69
4449 6974 3.986374 CATTGCGCGGTGTAATCAA 57.014 47.368 8.83 1.23 29.63 2.57
4721 7246 4.806640 ATGTTTCCTGTAAATGCCCTTG 57.193 40.909 0.00 0.00 0.00 3.61
4722 7247 7.069455 GGTTATATGTTTCCTGTAAATGCCCTT 59.931 37.037 0.00 0.00 0.00 3.95
4723 7248 6.549736 GGTTATATGTTTCCTGTAAATGCCCT 59.450 38.462 0.00 0.00 0.00 5.19
4724 7249 6.549736 AGGTTATATGTTTCCTGTAAATGCCC 59.450 38.462 0.00 0.00 0.00 5.36
4725 7250 7.284489 TGAGGTTATATGTTTCCTGTAAATGCC 59.716 37.037 0.00 0.00 0.00 4.40
4726 7251 8.220755 TGAGGTTATATGTTTCCTGTAAATGC 57.779 34.615 0.00 0.00 0.00 3.56
4728 7253 9.408648 CCTTGAGGTTATATGTTTCCTGTAAAT 57.591 33.333 0.00 0.00 0.00 1.40
4729 7254 7.338449 GCCTTGAGGTTATATGTTTCCTGTAAA 59.662 37.037 0.00 0.00 37.57 2.01
4730 7255 6.826741 GCCTTGAGGTTATATGTTTCCTGTAA 59.173 38.462 0.00 0.00 37.57 2.41
4731 7256 6.354130 GCCTTGAGGTTATATGTTTCCTGTA 58.646 40.000 0.00 0.00 37.57 2.74
4732 7257 5.193679 GCCTTGAGGTTATATGTTTCCTGT 58.806 41.667 0.00 0.00 37.57 4.00
4733 7258 4.580580 GGCCTTGAGGTTATATGTTTCCTG 59.419 45.833 0.00 0.00 37.57 3.86
4734 7259 4.229582 TGGCCTTGAGGTTATATGTTTCCT 59.770 41.667 3.32 0.00 37.57 3.36
4735 7260 4.338400 GTGGCCTTGAGGTTATATGTTTCC 59.662 45.833 3.32 0.00 37.57 3.13
4736 7261 4.338400 GGTGGCCTTGAGGTTATATGTTTC 59.662 45.833 3.32 0.00 37.57 2.78
4737 7262 4.017499 AGGTGGCCTTGAGGTTATATGTTT 60.017 41.667 3.32 0.00 37.57 2.83
4738 7263 3.527665 AGGTGGCCTTGAGGTTATATGTT 59.472 43.478 3.32 0.00 37.57 2.71
4739 7264 3.123273 AGGTGGCCTTGAGGTTATATGT 58.877 45.455 3.32 0.00 37.57 2.29
4740 7265 3.864789 AGGTGGCCTTGAGGTTATATG 57.135 47.619 3.32 0.00 37.57 1.78
4741 7266 3.910627 CCTAGGTGGCCTTGAGGTTATAT 59.089 47.826 3.32 0.00 34.61 0.86
4742 7267 3.314693 CCTAGGTGGCCTTGAGGTTATA 58.685 50.000 3.32 0.00 34.61 0.98
4743 7268 2.127708 CCTAGGTGGCCTTGAGGTTAT 58.872 52.381 3.32 0.00 34.61 1.89
4744 7269 1.580059 CCTAGGTGGCCTTGAGGTTA 58.420 55.000 3.32 0.00 34.61 2.85
4745 7270 2.387952 CCTAGGTGGCCTTGAGGTT 58.612 57.895 3.32 0.00 34.61 3.50
4746 7271 4.153957 CCTAGGTGGCCTTGAGGT 57.846 61.111 3.32 0.00 34.61 3.85
4755 7280 1.065199 TCTTGAGCATTGCCTAGGTGG 60.065 52.381 11.31 0.00 39.35 4.61
4756 7281 2.408271 TCTTGAGCATTGCCTAGGTG 57.592 50.000 11.31 1.66 0.00 4.00
4757 7282 2.158696 GGATCTTGAGCATTGCCTAGGT 60.159 50.000 11.31 0.00 0.00 3.08
4758 7283 2.502295 GGATCTTGAGCATTGCCTAGG 58.498 52.381 3.67 3.67 0.00 3.02
4759 7284 2.141517 CGGATCTTGAGCATTGCCTAG 58.858 52.381 4.70 3.93 0.00 3.02
4760 7285 1.762370 TCGGATCTTGAGCATTGCCTA 59.238 47.619 4.70 0.00 0.00 3.93
4761 7286 0.543277 TCGGATCTTGAGCATTGCCT 59.457 50.000 4.70 0.00 0.00 4.75
4762 7287 1.332997 CTTCGGATCTTGAGCATTGCC 59.667 52.381 4.70 0.00 0.00 4.52
4763 7288 2.283298 TCTTCGGATCTTGAGCATTGC 58.717 47.619 0.00 0.00 0.00 3.56
4764 7289 4.728917 GATCTTCGGATCTTGAGCATTG 57.271 45.455 0.00 0.00 45.34 2.82
4775 7300 8.391075 TCTTTGTTTTACTTTGATCTTCGGAT 57.609 30.769 0.00 0.00 37.39 4.18
4776 7301 7.713507 TCTCTTTGTTTTACTTTGATCTTCGGA 59.286 33.333 0.00 0.00 0.00 4.55
4777 7302 7.861630 TCTCTTTGTTTTACTTTGATCTTCGG 58.138 34.615 0.00 0.00 0.00 4.30
4778 7303 9.716507 TTTCTCTTTGTTTTACTTTGATCTTCG 57.283 29.630 0.00 0.00 0.00 3.79
4784 7309 9.651913 AGCAATTTTCTCTTTGTTTTACTTTGA 57.348 25.926 0.00 0.00 0.00 2.69
4787 7312 9.875691 AGAAGCAATTTTCTCTTTGTTTTACTT 57.124 25.926 0.00 0.00 31.97 2.24
4792 7317 9.914131 GGTATAGAAGCAATTTTCTCTTTGTTT 57.086 29.630 0.00 0.00 38.35 2.83
4793 7318 9.077885 TGGTATAGAAGCAATTTTCTCTTTGTT 57.922 29.630 0.00 0.00 38.35 2.83
4794 7319 8.635765 TGGTATAGAAGCAATTTTCTCTTTGT 57.364 30.769 0.00 0.00 38.35 2.83
4795 7320 9.727627 GATGGTATAGAAGCAATTTTCTCTTTG 57.272 33.333 0.00 0.00 39.48 2.77
4796 7321 8.616076 CGATGGTATAGAAGCAATTTTCTCTTT 58.384 33.333 0.00 0.00 39.48 2.52
4797 7322 7.987458 TCGATGGTATAGAAGCAATTTTCTCTT 59.013 33.333 0.00 0.00 39.48 2.85
4798 7323 7.439655 GTCGATGGTATAGAAGCAATTTTCTCT 59.560 37.037 0.00 0.00 39.48 3.10
4799 7324 7.224753 TGTCGATGGTATAGAAGCAATTTTCTC 59.775 37.037 0.00 0.00 39.48 2.87
4800 7325 7.047891 TGTCGATGGTATAGAAGCAATTTTCT 58.952 34.615 0.00 0.00 39.48 2.52
4801 7326 7.246674 TGTCGATGGTATAGAAGCAATTTTC 57.753 36.000 0.00 0.00 39.48 2.29
4802 7327 7.415206 GGTTGTCGATGGTATAGAAGCAATTTT 60.415 37.037 0.00 0.00 39.48 1.82
4803 7328 6.038271 GGTTGTCGATGGTATAGAAGCAATTT 59.962 38.462 0.00 0.00 39.48 1.82
4804 7329 5.527582 GGTTGTCGATGGTATAGAAGCAATT 59.472 40.000 0.00 0.00 39.48 2.32
4805 7330 5.057149 GGTTGTCGATGGTATAGAAGCAAT 58.943 41.667 0.00 0.00 39.48 3.56
4806 7331 4.161565 AGGTTGTCGATGGTATAGAAGCAA 59.838 41.667 0.00 0.00 39.48 3.91
4807 7332 3.704566 AGGTTGTCGATGGTATAGAAGCA 59.295 43.478 0.00 0.00 40.55 3.91
4808 7333 4.038162 AGAGGTTGTCGATGGTATAGAAGC 59.962 45.833 0.00 0.00 0.00 3.86
4809 7334 5.524284 CAGAGGTTGTCGATGGTATAGAAG 58.476 45.833 0.00 0.00 0.00 2.85
4810 7335 4.202121 GCAGAGGTTGTCGATGGTATAGAA 60.202 45.833 0.00 0.00 0.00 2.10
4811 7336 3.318275 GCAGAGGTTGTCGATGGTATAGA 59.682 47.826 0.00 0.00 0.00 1.98
4812 7337 3.068165 TGCAGAGGTTGTCGATGGTATAG 59.932 47.826 0.00 0.00 0.00 1.31
4813 7338 3.028130 TGCAGAGGTTGTCGATGGTATA 58.972 45.455 0.00 0.00 0.00 1.47
4814 7339 1.831106 TGCAGAGGTTGTCGATGGTAT 59.169 47.619 0.00 0.00 0.00 2.73
4815 7340 1.262417 TGCAGAGGTTGTCGATGGTA 58.738 50.000 0.00 0.00 0.00 3.25
4816 7341 0.396435 TTGCAGAGGTTGTCGATGGT 59.604 50.000 0.00 0.00 0.00 3.55
4817 7342 1.742761 ATTGCAGAGGTTGTCGATGG 58.257 50.000 0.00 0.00 0.00 3.51
4818 7343 2.286294 GCTATTGCAGAGGTTGTCGATG 59.714 50.000 0.00 0.00 39.41 3.84
4819 7344 2.169352 AGCTATTGCAGAGGTTGTCGAT 59.831 45.455 1.12 0.00 42.74 3.59
4820 7345 1.550524 AGCTATTGCAGAGGTTGTCGA 59.449 47.619 1.12 0.00 42.74 4.20
4821 7346 1.929836 GAGCTATTGCAGAGGTTGTCG 59.070 52.381 1.12 0.00 42.74 4.35
4822 7347 2.977914 TGAGCTATTGCAGAGGTTGTC 58.022 47.619 1.12 0.00 42.74 3.18
4823 7348 3.641434 ATGAGCTATTGCAGAGGTTGT 57.359 42.857 1.12 0.00 42.74 3.32
4824 7349 4.669318 CAAATGAGCTATTGCAGAGGTTG 58.331 43.478 1.12 0.00 42.74 3.77
4825 7350 4.978083 CAAATGAGCTATTGCAGAGGTT 57.022 40.909 1.12 0.00 42.74 3.50
4833 7358 4.142116 TGTTGGATGGCAAATGAGCTATTG 60.142 41.667 0.00 0.00 35.73 1.90
4834 7359 4.025360 TGTTGGATGGCAAATGAGCTATT 58.975 39.130 0.00 0.00 35.73 1.73
4835 7360 3.634504 TGTTGGATGGCAAATGAGCTAT 58.365 40.909 0.00 0.00 38.50 2.97
4836 7361 3.084536 TGTTGGATGGCAAATGAGCTA 57.915 42.857 0.00 0.00 34.17 3.32
4837 7362 1.927487 TGTTGGATGGCAAATGAGCT 58.073 45.000 0.00 0.00 34.17 4.09
4838 7363 2.747396 TTGTTGGATGGCAAATGAGC 57.253 45.000 0.00 0.00 0.00 4.26
4839 7364 2.997986 GCTTTGTTGGATGGCAAATGAG 59.002 45.455 0.00 0.00 34.60 2.90
4840 7365 2.633967 AGCTTTGTTGGATGGCAAATGA 59.366 40.909 0.00 0.00 34.60 2.57
4841 7366 2.739913 CAGCTTTGTTGGATGGCAAATG 59.260 45.455 0.00 0.00 34.60 2.32
4842 7367 2.872842 GCAGCTTTGTTGGATGGCAAAT 60.873 45.455 0.00 0.00 34.60 2.32
4843 7368 1.540797 GCAGCTTTGTTGGATGGCAAA 60.541 47.619 0.00 0.00 34.05 3.68
4844 7369 0.033781 GCAGCTTTGTTGGATGGCAA 59.966 50.000 0.00 0.00 0.00 4.52
4845 7370 1.114119 TGCAGCTTTGTTGGATGGCA 61.114 50.000 0.00 0.00 0.00 4.92
4846 7371 0.389426 CTGCAGCTTTGTTGGATGGC 60.389 55.000 0.00 0.00 0.00 4.40
4847 7372 0.963962 ACTGCAGCTTTGTTGGATGG 59.036 50.000 15.27 0.00 0.00 3.51
4848 7373 1.933500 GCACTGCAGCTTTGTTGGATG 60.934 52.381 15.27 1.05 0.00 3.51
4849 7374 0.316204 GCACTGCAGCTTTGTTGGAT 59.684 50.000 15.27 0.00 0.00 3.41
4850 7375 0.752743 AGCACTGCAGCTTTGTTGGA 60.753 50.000 15.27 0.00 43.70 3.53
4851 7376 1.737816 AGCACTGCAGCTTTGTTGG 59.262 52.632 15.27 0.00 43.70 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.