Multiple sequence alignment - TraesCS6A01G056100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G056100 chr6A 100.000 3126 0 0 1 3126 29577317 29580442 0.000000e+00 5773.0
1 TraesCS6A01G056100 chr6D 92.269 2600 65 26 3 2513 28310727 28308175 0.000000e+00 3563.0
2 TraesCS6A01G056100 chr6D 92.710 1605 61 21 682 2246 420225684 420224096 0.000000e+00 2265.0
3 TraesCS6A01G056100 chr6D 95.322 342 14 2 3 344 420228718 420228379 2.740000e-150 542.0
4 TraesCS6A01G056100 chr6D 89.433 388 31 10 623 1006 13921681 13922062 6.060000e-132 481.0
5 TraesCS6A01G056100 chr6D 94.330 194 5 2 2551 2738 28307603 28307410 3.050000e-75 292.0
6 TraesCS6A01G056100 chr6D 89.759 166 9 5 2680 2844 28305976 28305818 4.090000e-49 206.0
7 TraesCS6A01G056100 chr5D 90.465 2664 121 44 3 2561 441569777 441567142 0.000000e+00 3389.0
8 TraesCS6A01G056100 chr5D 90.375 1652 77 39 961 2561 490431474 490429854 0.000000e+00 2095.0
9 TraesCS6A01G056100 chr5D 91.866 922 37 8 3 890 490437551 490436634 0.000000e+00 1253.0
10 TraesCS6A01G056100 chr5D 78.276 290 39 13 2854 3122 412110971 412111257 6.940000e-37 165.0
11 TraesCS6A01G056100 chr7D 91.331 2480 117 32 3 2400 44717304 44714841 0.000000e+00 3299.0
12 TraesCS6A01G056100 chr7D 86.254 291 20 14 2291 2561 44714828 44714538 6.550000e-77 298.0
13 TraesCS6A01G056100 chr7D 78.596 285 36 11 2862 3124 508421618 508421337 6.940000e-37 165.0
14 TraesCS6A01G056100 chr5A 92.505 2295 83 28 345 2561 611977601 611975318 0.000000e+00 3203.0
15 TraesCS6A01G056100 chr5A 95.322 342 15 1 3 344 611978651 611978311 2.740000e-150 542.0
16 TraesCS6A01G056100 chr5B 92.081 2235 91 32 396 2561 604858080 604855863 0.000000e+00 3068.0
17 TraesCS6A01G056100 chr5B 92.111 431 19 5 3 418 604871936 604872366 7.460000e-166 593.0
18 TraesCS6A01G056100 chr5B 87.283 173 16 4 2685 2855 604855337 604855169 3.180000e-45 193.0
19 TraesCS6A01G056100 chr5B 94.340 53 3 0 2551 2603 604855388 604855336 7.190000e-12 82.4
20 TraesCS6A01G056100 chr7A 92.351 2144 92 25 3 2090 47295358 47293231 0.000000e+00 2985.0
21 TraesCS6A01G056100 chr7A 84.964 552 32 18 2046 2561 47293235 47292699 2.150000e-141 512.0
22 TraesCS6A01G056100 chr4A 80.255 785 113 34 918 1683 542044242 542043481 1.270000e-153 553.0
23 TraesCS6A01G056100 chr4A 94.152 342 19 1 3 344 581493314 581492974 1.280000e-143 520.0
24 TraesCS6A01G056100 chr4A 82.333 300 45 7 1742 2036 542043329 542043033 1.440000e-63 254.0
25 TraesCS6A01G056100 chr3A 89.384 292 18 5 2006 2288 128520874 128520587 3.830000e-94 355.0
26 TraesCS6A01G056100 chr3A 84.071 113 16 2 2856 2968 598995918 598996028 1.190000e-19 108.0
27 TraesCS6A01G056100 chr1D 83.810 315 19 7 1713 2022 310148264 310148551 1.430000e-68 270.0
28 TraesCS6A01G056100 chr1A 93.923 181 8 3 2006 2184 389877111 389877290 1.430000e-68 270.0
29 TraesCS6A01G056100 chr1A 86.667 120 5 2 2177 2288 389877448 389877564 4.230000e-24 122.0
30 TraesCS6A01G056100 chr4D 86.603 209 21 3 918 1125 55035065 55035267 1.130000e-54 224.0
31 TraesCS6A01G056100 chr2B 85.437 206 18 4 345 540 138115667 138115464 1.470000e-48 204.0
32 TraesCS6A01G056100 chr3B 78.746 287 35 10 2862 3124 143307957 143308241 5.360000e-38 169.0
33 TraesCS6A01G056100 chr4B 90.833 120 10 1 1217 1335 81992899 81993018 3.230000e-35 159.0
34 TraesCS6A01G056100 chr2A 89.320 103 8 1 441 540 46323254 46323152 3.270000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G056100 chr6A 29577317 29580442 3125 False 5773.000000 5773 100.000000 1 3126 1 chr6A.!!$F1 3125
1 TraesCS6A01G056100 chr6D 420224096 420228718 4622 True 1403.500000 2265 94.016000 3 2246 2 chr6D.!!$R2 2243
2 TraesCS6A01G056100 chr6D 28305818 28310727 4909 True 1353.666667 3563 92.119333 3 2844 3 chr6D.!!$R1 2841
3 TraesCS6A01G056100 chr5D 441567142 441569777 2635 True 3389.000000 3389 90.465000 3 2561 1 chr5D.!!$R1 2558
4 TraesCS6A01G056100 chr5D 490429854 490431474 1620 True 2095.000000 2095 90.375000 961 2561 1 chr5D.!!$R2 1600
5 TraesCS6A01G056100 chr5D 490436634 490437551 917 True 1253.000000 1253 91.866000 3 890 1 chr5D.!!$R3 887
6 TraesCS6A01G056100 chr7D 44714538 44717304 2766 True 1798.500000 3299 88.792500 3 2561 2 chr7D.!!$R2 2558
7 TraesCS6A01G056100 chr5A 611975318 611978651 3333 True 1872.500000 3203 93.913500 3 2561 2 chr5A.!!$R1 2558
8 TraesCS6A01G056100 chr5B 604855169 604858080 2911 True 1114.466667 3068 91.234667 396 2855 3 chr5B.!!$R1 2459
9 TraesCS6A01G056100 chr7A 47292699 47295358 2659 True 1748.500000 2985 88.657500 3 2561 2 chr7A.!!$R1 2558
10 TraesCS6A01G056100 chr4A 542043033 542044242 1209 True 403.500000 553 81.294000 918 2036 2 chr4A.!!$R2 1118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 281 2.099756 GGGGTTGCTCATGAATTACAGC 59.9 50.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 4895 3.61754 TGCCGAACACACAACTTATTG 57.382 42.857 0.0 0.0 41.98 1.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 281 2.099756 GGGGTTGCTCATGAATTACAGC 59.900 50.000 0.00 0.00 0.00 4.40
298 302 6.058183 CAGCATTTAGGCTTACAGTAGGATT 58.942 40.000 0.00 0.00 42.71 3.01
306 310 5.130643 AGGCTTACAGTAGGATTAACTTCCC 59.869 44.000 0.00 0.00 36.35 3.97
391 1108 6.049955 AGGAATCCATCTCACGTTTTCTTA 57.950 37.500 0.61 0.00 0.00 2.10
740 3147 4.589908 AGAAAGCCGGTTAATCATTCAGT 58.410 39.130 1.90 0.00 0.00 3.41
741 3148 4.396166 AGAAAGCCGGTTAATCATTCAGTG 59.604 41.667 1.90 0.00 0.00 3.66
850 3264 2.488545 CTGTGGAGTAACTGTAGCTCGT 59.511 50.000 0.00 0.00 0.00 4.18
932 3374 2.268076 GGAATGTGTGGGTGCGCTT 61.268 57.895 9.73 0.00 0.00 4.68
1064 3509 2.423577 CCAAGTCTCGGTTAACCCTTG 58.576 52.381 23.87 23.87 33.87 3.61
1248 3694 7.916914 ATATACACGAAATAATGGCCTTACC 57.083 36.000 3.32 0.00 39.84 2.85
1415 3872 2.098770 GCATCCTGCCTGATGACTTTTC 59.901 50.000 14.75 0.00 43.94 2.29
1526 3990 3.227810 AGTAACGGGAGATTCGTCAAC 57.772 47.619 0.00 0.00 40.18 3.18
1564 4028 7.342026 ACCAGTTTATGATTTGGTAAGGAATCC 59.658 37.037 0.00 0.00 41.92 3.01
1655 4122 4.398988 CCAAATAGAGCTGGTGTTTGCATA 59.601 41.667 0.00 0.00 0.00 3.14
1929 4528 8.335532 TGAACTGTATTGAATTCTTGTAAGGG 57.664 34.615 7.05 0.00 0.00 3.95
1936 4535 9.120538 GTATTGAATTCTTGTAAGGGAGCATTA 57.879 33.333 7.05 0.00 0.00 1.90
2111 4757 1.337118 GTTGGATGTGCCCCAAGAAA 58.663 50.000 0.00 0.00 43.63 2.52
2241 4895 5.739161 CGAAAGTTCAAATGTTAGCATAGCC 59.261 40.000 0.00 0.00 34.39 3.93
2318 4973 7.497595 TCTGAAACTATTGTACTGTGAACTGT 58.502 34.615 0.00 0.00 0.00 3.55
2399 5214 1.853963 AGCAGGACTATTGACCGTCT 58.146 50.000 0.00 0.00 33.32 4.18
2401 5216 2.093973 AGCAGGACTATTGACCGTCTTG 60.094 50.000 0.00 0.00 39.41 3.02
2402 5217 2.094182 GCAGGACTATTGACCGTCTTGA 60.094 50.000 5.83 0.00 38.93 3.02
2403 5218 3.775202 CAGGACTATTGACCGTCTTGAG 58.225 50.000 0.00 0.00 38.93 3.02
2404 5219 3.444034 CAGGACTATTGACCGTCTTGAGA 59.556 47.826 0.00 0.00 38.93 3.27
2408 5229 5.292101 GGACTATTGACCGTCTTGAGAATTG 59.708 44.000 0.00 0.00 0.00 2.32
2614 5998 3.071459 GAGACATTGTGCCGCGTCG 62.071 63.158 4.92 0.00 33.56 5.12
2662 6047 0.657368 GCGTCCGCAAGTTTTGACTG 60.657 55.000 6.82 0.00 41.49 3.51
2721 6111 4.973396 TCTTCATGTTTAGCTGATTTGCG 58.027 39.130 0.00 0.00 38.13 4.85
2747 7629 9.856488 GTAATGCTAAGTACAATATGCTAGCTA 57.144 33.333 17.23 6.33 0.00 3.32
2748 7630 8.994429 AATGCTAAGTACAATATGCTAGCTAG 57.006 34.615 16.84 16.84 0.00 3.42
2766 7648 9.262358 GCTAGCTAGCTTTGTATATAACTTTGT 57.738 33.333 33.71 0.00 45.62 2.83
2822 7705 7.976734 TGTGAATTTTATTCCGAACACAAAAGT 59.023 29.630 0.00 0.00 34.81 2.66
2855 7738 1.487976 ACACATACAGGCTCATGAGGG 59.512 52.381 23.89 0.81 0.00 4.30
2856 7739 1.135094 ACATACAGGCTCATGAGGGG 58.865 55.000 23.89 0.02 0.00 4.79
2857 7740 1.344393 ACATACAGGCTCATGAGGGGA 60.344 52.381 23.89 1.42 0.00 4.81
2858 7741 1.770658 CATACAGGCTCATGAGGGGAA 59.229 52.381 23.89 0.00 0.00 3.97
2859 7742 1.500474 TACAGGCTCATGAGGGGAAG 58.500 55.000 23.89 0.00 0.00 3.46
2860 7743 0.548682 ACAGGCTCATGAGGGGAAGT 60.549 55.000 23.89 0.00 0.00 3.01
2861 7744 0.179936 CAGGCTCATGAGGGGAAGTC 59.820 60.000 23.89 5.34 0.00 3.01
2862 7745 0.985490 AGGCTCATGAGGGGAAGTCC 60.985 60.000 23.89 14.04 0.00 3.85
2863 7746 0.985490 GGCTCATGAGGGGAAGTCCT 60.985 60.000 23.89 0.00 40.43 3.85
2864 7747 1.692762 GGCTCATGAGGGGAAGTCCTA 60.693 57.143 23.89 0.00 37.25 2.94
2865 7748 2.334023 GCTCATGAGGGGAAGTCCTAT 58.666 52.381 23.89 0.00 37.25 2.57
2866 7749 3.511477 GCTCATGAGGGGAAGTCCTATA 58.489 50.000 23.89 0.00 37.25 1.31
2867 7750 3.259625 GCTCATGAGGGGAAGTCCTATAC 59.740 52.174 23.89 0.00 37.25 1.47
2868 7751 3.497332 TCATGAGGGGAAGTCCTATACG 58.503 50.000 0.00 0.00 37.25 3.06
2869 7752 3.139584 TCATGAGGGGAAGTCCTATACGA 59.860 47.826 0.00 0.00 37.25 3.43
2870 7753 2.941480 TGAGGGGAAGTCCTATACGAC 58.059 52.381 0.00 0.00 37.25 4.34
2871 7754 1.878734 GAGGGGAAGTCCTATACGACG 59.121 57.143 0.00 0.00 37.25 5.12
2872 7755 0.313357 GGGGAAGTCCTATACGACGC 59.687 60.000 0.00 0.00 37.85 5.19
2873 7756 1.316651 GGGAAGTCCTATACGACGCT 58.683 55.000 0.00 0.00 37.85 5.07
2874 7757 1.266446 GGGAAGTCCTATACGACGCTC 59.734 57.143 0.00 0.00 37.85 5.03
2875 7758 2.220313 GGAAGTCCTATACGACGCTCT 58.780 52.381 0.00 0.00 37.85 4.09
2876 7759 2.617774 GGAAGTCCTATACGACGCTCTT 59.382 50.000 0.00 0.00 37.85 2.85
2877 7760 3.066481 GGAAGTCCTATACGACGCTCTTT 59.934 47.826 0.00 0.00 37.85 2.52
2878 7761 3.694535 AGTCCTATACGACGCTCTTTG 57.305 47.619 0.00 0.00 37.85 2.77
2879 7762 2.117910 GTCCTATACGACGCTCTTTGC 58.882 52.381 0.00 0.00 38.57 3.68
2890 7773 2.056094 GCTCTTTGCGTCAAAATGCT 57.944 45.000 15.02 0.00 38.30 3.79
2891 7774 1.717645 GCTCTTTGCGTCAAAATGCTG 59.282 47.619 15.02 3.73 38.30 4.41
2892 7775 2.322161 CTCTTTGCGTCAAAATGCTGG 58.678 47.619 6.50 0.00 38.30 4.85
2893 7776 1.000385 TCTTTGCGTCAAAATGCTGGG 60.000 47.619 6.50 0.00 38.30 4.45
2894 7777 0.033228 TTTGCGTCAAAATGCTGGGG 59.967 50.000 3.08 0.00 38.30 4.96
2895 7778 2.125952 GCGTCAAAATGCTGGGGC 60.126 61.111 0.00 0.00 34.40 5.80
2896 7779 2.639327 GCGTCAAAATGCTGGGGCT 61.639 57.895 0.00 0.00 39.59 5.19
2897 7780 1.966762 CGTCAAAATGCTGGGGCTT 59.033 52.632 0.00 0.00 39.59 4.35
2898 7781 0.109132 CGTCAAAATGCTGGGGCTTC 60.109 55.000 0.00 0.00 39.59 3.86
2899 7782 0.109132 GTCAAAATGCTGGGGCTTCG 60.109 55.000 0.00 0.00 39.59 3.79
2900 7783 1.446618 CAAAATGCTGGGGCTTCGC 60.447 57.895 0.00 0.00 39.59 4.70
2901 7784 1.907807 AAAATGCTGGGGCTTCGCA 60.908 52.632 0.00 0.00 39.59 5.10
2902 7785 2.158561 AAAATGCTGGGGCTTCGCAC 62.159 55.000 0.00 0.00 39.59 5.34
2903 7786 3.866379 AATGCTGGGGCTTCGCACA 62.866 57.895 0.00 0.00 39.59 4.57
2905 7788 4.704833 GCTGGGGCTTCGCACAGA 62.705 66.667 12.04 0.00 37.29 3.41
2906 7789 2.435586 CTGGGGCTTCGCACAGAG 60.436 66.667 4.45 0.00 37.29 3.35
2907 7790 4.704833 TGGGGCTTCGCACAGAGC 62.705 66.667 0.00 0.00 40.87 4.09
2916 7799 4.663444 GCACAGAGCGTCTCAGTT 57.337 55.556 9.09 0.00 27.84 3.16
2917 7800 2.906047 GCACAGAGCGTCTCAGTTT 58.094 52.632 9.09 0.00 27.84 2.66
2918 7801 0.510359 GCACAGAGCGTCTCAGTTTG 59.490 55.000 9.09 2.24 27.84 2.93
2919 7802 0.510359 CACAGAGCGTCTCAGTTTGC 59.490 55.000 9.09 0.00 27.84 3.68
2920 7803 0.941463 ACAGAGCGTCTCAGTTTGCG 60.941 55.000 9.09 0.00 32.06 4.85
2921 7804 1.373497 AGAGCGTCTCAGTTTGCGG 60.373 57.895 9.09 0.00 32.06 5.69
2922 7805 2.357517 AGCGTCTCAGTTTGCGGG 60.358 61.111 0.00 0.00 0.00 6.13
2923 7806 4.090057 GCGTCTCAGTTTGCGGGC 62.090 66.667 0.00 0.00 0.00 6.13
2924 7807 2.357517 CGTCTCAGTTTGCGGGCT 60.358 61.111 0.00 0.00 0.00 5.19
2925 7808 1.961277 CGTCTCAGTTTGCGGGCTT 60.961 57.895 0.00 0.00 0.00 4.35
2926 7809 1.507141 CGTCTCAGTTTGCGGGCTTT 61.507 55.000 0.00 0.00 0.00 3.51
2927 7810 0.040067 GTCTCAGTTTGCGGGCTTTG 60.040 55.000 0.00 0.00 0.00 2.77
2928 7811 0.465460 TCTCAGTTTGCGGGCTTTGT 60.465 50.000 0.00 0.00 0.00 2.83
2929 7812 0.318107 CTCAGTTTGCGGGCTTTGTG 60.318 55.000 0.00 0.00 0.00 3.33
2930 7813 1.300080 CAGTTTGCGGGCTTTGTGG 60.300 57.895 0.00 0.00 0.00 4.17
2931 7814 2.028925 GTTTGCGGGCTTTGTGGG 59.971 61.111 0.00 0.00 0.00 4.61
2932 7815 3.922640 TTTGCGGGCTTTGTGGGC 61.923 61.111 0.00 0.00 0.00 5.36
2939 7822 3.230990 GCTTTGTGGGCCGGGTTT 61.231 61.111 2.18 0.00 0.00 3.27
2940 7823 2.802724 GCTTTGTGGGCCGGGTTTT 61.803 57.895 2.18 0.00 0.00 2.43
2941 7824 1.826709 CTTTGTGGGCCGGGTTTTT 59.173 52.632 2.18 0.00 0.00 1.94
2957 7840 1.769733 TTTTTCGACCGTACCGAGTG 58.230 50.000 0.00 0.00 37.35 3.51
2958 7841 0.039256 TTTTCGACCGTACCGAGTGG 60.039 55.000 0.00 0.00 42.84 4.00
2959 7842 2.476534 TTTCGACCGTACCGAGTGGC 62.477 60.000 0.00 0.00 39.70 5.01
2960 7843 3.437795 CGACCGTACCGAGTGGCT 61.438 66.667 0.00 0.00 39.70 4.75
2961 7844 2.488820 GACCGTACCGAGTGGCTC 59.511 66.667 0.00 0.00 39.70 4.70
2962 7845 3.061260 GACCGTACCGAGTGGCTCC 62.061 68.421 0.00 0.00 39.70 4.70
2963 7846 3.066190 CCGTACCGAGTGGCTCCA 61.066 66.667 0.00 0.00 39.70 3.86
2964 7847 2.642254 CCGTACCGAGTGGCTCCAA 61.642 63.158 0.00 0.00 39.70 3.53
2965 7848 1.290955 CGTACCGAGTGGCTCCAAA 59.709 57.895 0.00 0.00 39.70 3.28
2966 7849 0.320073 CGTACCGAGTGGCTCCAAAA 60.320 55.000 0.00 0.00 39.70 2.44
2967 7850 1.874739 CGTACCGAGTGGCTCCAAAAA 60.875 52.381 0.00 0.00 39.70 1.94
2998 7881 2.883572 TCCGTAGTGGAGAGAAGGC 58.116 57.895 0.00 0.00 43.74 4.35
2999 7882 1.030488 TCCGTAGTGGAGAGAAGGCG 61.030 60.000 0.00 0.00 43.74 5.52
3000 7883 1.030488 CCGTAGTGGAGAGAAGGCGA 61.030 60.000 0.00 0.00 42.00 5.54
3001 7884 1.025812 CGTAGTGGAGAGAAGGCGAT 58.974 55.000 0.00 0.00 0.00 4.58
3002 7885 2.219458 CGTAGTGGAGAGAAGGCGATA 58.781 52.381 0.00 0.00 0.00 2.92
3003 7886 2.031857 CGTAGTGGAGAGAAGGCGATAC 60.032 54.545 0.00 0.00 0.00 2.24
3004 7887 2.145397 AGTGGAGAGAAGGCGATACA 57.855 50.000 0.00 0.00 0.00 2.29
3005 7888 2.457598 AGTGGAGAGAAGGCGATACAA 58.542 47.619 0.00 0.00 0.00 2.41
3006 7889 2.166664 AGTGGAGAGAAGGCGATACAAC 59.833 50.000 0.00 0.00 0.00 3.32
3007 7890 1.480954 TGGAGAGAAGGCGATACAACC 59.519 52.381 0.00 0.00 0.00 3.77
3008 7891 1.480954 GGAGAGAAGGCGATACAACCA 59.519 52.381 0.00 0.00 0.00 3.67
3009 7892 2.093658 GGAGAGAAGGCGATACAACCAA 60.094 50.000 0.00 0.00 0.00 3.67
3010 7893 2.930682 GAGAGAAGGCGATACAACCAAC 59.069 50.000 0.00 0.00 0.00 3.77
3011 7894 2.567615 AGAGAAGGCGATACAACCAACT 59.432 45.455 0.00 0.00 0.00 3.16
3012 7895 2.673368 GAGAAGGCGATACAACCAACTG 59.327 50.000 0.00 0.00 0.00 3.16
3013 7896 2.301870 AGAAGGCGATACAACCAACTGA 59.698 45.455 0.00 0.00 0.00 3.41
3014 7897 2.386661 AGGCGATACAACCAACTGAG 57.613 50.000 0.00 0.00 0.00 3.35
3015 7898 0.727398 GGCGATACAACCAACTGAGC 59.273 55.000 0.00 0.00 0.00 4.26
3016 7899 1.676014 GGCGATACAACCAACTGAGCT 60.676 52.381 0.00 0.00 0.00 4.09
3017 7900 2.418197 GGCGATACAACCAACTGAGCTA 60.418 50.000 0.00 0.00 0.00 3.32
3018 7901 2.860735 GCGATACAACCAACTGAGCTAG 59.139 50.000 0.00 0.00 0.00 3.42
3019 7902 3.676324 GCGATACAACCAACTGAGCTAGT 60.676 47.826 0.00 0.00 42.89 2.57
3020 7903 3.859961 CGATACAACCAACTGAGCTAGTG 59.140 47.826 0.00 0.00 40.26 2.74
3021 7904 4.380550 CGATACAACCAACTGAGCTAGTGA 60.381 45.833 0.00 0.00 40.26 3.41
3022 7905 3.393089 ACAACCAACTGAGCTAGTGAG 57.607 47.619 0.00 0.00 40.26 3.51
3038 7921 6.459257 CTAGTGAGCATCGGTGATTATTTC 57.541 41.667 0.00 0.00 38.61 2.17
3039 7922 4.769688 AGTGAGCATCGGTGATTATTTCA 58.230 39.130 0.00 0.00 38.61 2.69
3060 7943 6.870971 TCACAACACCAACTATTAAGAACC 57.129 37.500 0.00 0.00 0.00 3.62
3061 7944 6.358178 TCACAACACCAACTATTAAGAACCA 58.642 36.000 0.00 0.00 0.00 3.67
3062 7945 6.829298 TCACAACACCAACTATTAAGAACCAA 59.171 34.615 0.00 0.00 0.00 3.67
3063 7946 7.339721 TCACAACACCAACTATTAAGAACCAAA 59.660 33.333 0.00 0.00 0.00 3.28
3064 7947 7.647715 CACAACACCAACTATTAAGAACCAAAG 59.352 37.037 0.00 0.00 0.00 2.77
3065 7948 7.340999 ACAACACCAACTATTAAGAACCAAAGT 59.659 33.333 0.00 0.00 0.00 2.66
3066 7949 7.506328 ACACCAACTATTAAGAACCAAAGTC 57.494 36.000 0.00 0.00 0.00 3.01
3067 7950 6.489022 ACACCAACTATTAAGAACCAAAGTCC 59.511 38.462 0.00 0.00 0.00 3.85
3068 7951 6.488683 CACCAACTATTAAGAACCAAAGTCCA 59.511 38.462 0.00 0.00 0.00 4.02
3069 7952 6.715264 ACCAACTATTAAGAACCAAAGTCCAG 59.285 38.462 0.00 0.00 0.00 3.86
3070 7953 6.349363 CCAACTATTAAGAACCAAAGTCCAGC 60.349 42.308 0.00 0.00 0.00 4.85
3071 7954 5.876357 ACTATTAAGAACCAAAGTCCAGCA 58.124 37.500 0.00 0.00 0.00 4.41
3072 7955 5.705905 ACTATTAAGAACCAAAGTCCAGCAC 59.294 40.000 0.00 0.00 0.00 4.40
3073 7956 2.435372 AAGAACCAAAGTCCAGCACA 57.565 45.000 0.00 0.00 0.00 4.57
3074 7957 1.972872 AGAACCAAAGTCCAGCACAG 58.027 50.000 0.00 0.00 0.00 3.66
3075 7958 1.490490 AGAACCAAAGTCCAGCACAGA 59.510 47.619 0.00 0.00 0.00 3.41
3076 7959 2.107204 AGAACCAAAGTCCAGCACAGAT 59.893 45.455 0.00 0.00 0.00 2.90
3077 7960 2.664402 ACCAAAGTCCAGCACAGATT 57.336 45.000 0.00 0.00 0.00 2.40
3078 7961 2.949447 ACCAAAGTCCAGCACAGATTT 58.051 42.857 0.00 0.00 0.00 2.17
3079 7962 2.624838 ACCAAAGTCCAGCACAGATTTG 59.375 45.455 0.00 0.00 0.00 2.32
3080 7963 2.886523 CCAAAGTCCAGCACAGATTTGA 59.113 45.455 5.58 0.00 31.01 2.69
3081 7964 3.318839 CCAAAGTCCAGCACAGATTTGAA 59.681 43.478 5.58 0.00 31.01 2.69
3082 7965 4.543692 CAAAGTCCAGCACAGATTTGAAG 58.456 43.478 0.00 0.00 31.01 3.02
3083 7966 3.777106 AGTCCAGCACAGATTTGAAGA 57.223 42.857 0.00 0.00 0.00 2.87
3084 7967 4.090761 AGTCCAGCACAGATTTGAAGAA 57.909 40.909 0.00 0.00 0.00 2.52
3085 7968 4.660168 AGTCCAGCACAGATTTGAAGAAT 58.340 39.130 0.00 0.00 0.00 2.40
3086 7969 5.075493 AGTCCAGCACAGATTTGAAGAATT 58.925 37.500 0.00 0.00 0.00 2.17
3087 7970 5.537674 AGTCCAGCACAGATTTGAAGAATTT 59.462 36.000 0.00 0.00 0.00 1.82
3088 7971 5.860716 GTCCAGCACAGATTTGAAGAATTTC 59.139 40.000 0.00 0.00 0.00 2.17
3089 7972 5.771666 TCCAGCACAGATTTGAAGAATTTCT 59.228 36.000 0.00 0.00 34.31 2.52
3090 7973 5.862323 CCAGCACAGATTTGAAGAATTTCTG 59.138 40.000 0.00 0.54 34.31 3.02
3091 7974 6.294342 CCAGCACAGATTTGAAGAATTTCTGA 60.294 38.462 7.81 0.00 34.31 3.27
3092 7975 7.143340 CAGCACAGATTTGAAGAATTTCTGAA 58.857 34.615 7.81 0.00 34.31 3.02
3093 7976 7.650504 CAGCACAGATTTGAAGAATTTCTGAAA 59.349 33.333 5.15 5.15 34.31 2.69
3094 7977 8.365647 AGCACAGATTTGAAGAATTTCTGAAAT 58.634 29.630 9.76 9.76 34.31 2.17
3095 7978 8.985805 GCACAGATTTGAAGAATTTCTGAAATT 58.014 29.630 24.16 24.16 43.43 1.82
3104 7987 9.814899 TGAAGAATTTCTGAAATTACAAAAGCA 57.185 25.926 24.02 14.06 40.97 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.815421 AGCAAGATTAGCGGTGGCG 60.815 57.895 0.00 0.00 46.35 5.69
1 2 1.026718 ACAGCAAGATTAGCGGTGGC 61.027 55.000 0.00 0.00 38.92 5.01
277 281 9.614792 AAGTTAATCCTACTGTAAGCCTAAATG 57.385 33.333 0.00 0.00 37.60 2.32
351 1067 7.562135 TGGATTCCTATTAACCAGTGAAGTAC 58.438 38.462 3.95 0.00 0.00 2.73
391 1108 6.463995 TTTACTTTGAGAAAGGCACAACAT 57.536 33.333 0.00 0.00 42.82 2.71
740 3147 6.355747 TCATGACTGAATACCATGCATAACA 58.644 36.000 0.00 0.00 37.99 2.41
741 3148 6.866010 TCATGACTGAATACCATGCATAAC 57.134 37.500 0.00 0.00 37.99 1.89
932 3374 8.687242 AGATGATTAGATCAACTAGTCGAAACA 58.313 33.333 0.00 0.00 43.50 2.83
1064 3509 5.050091 CCTGGAATCTGTATCGTGTTAATGC 60.050 44.000 0.00 0.00 0.00 3.56
1222 3668 9.439500 GGTAAGGCCATTATTTCGTGTATATTA 57.561 33.333 5.01 0.00 37.17 0.98
1415 3872 5.115480 ACACTAAAATTGGTGGCACAAAAG 58.885 37.500 20.82 11.06 44.16 2.27
1640 4107 4.272489 ACATACATATGCAAACACCAGCT 58.728 39.130 1.58 0.00 37.19 4.24
1846 4439 7.068716 CCAAAAAGATTTAGGAGAATACTGGGG 59.931 40.741 0.00 0.00 0.00 4.96
1936 4535 4.298103 AGATCAGGACAAGCAACATTCT 57.702 40.909 0.00 0.00 0.00 2.40
2062 4669 3.891049 ACCATGGAGCAGATTTAGGTTC 58.109 45.455 21.47 0.00 0.00 3.62
2111 4757 9.487790 TGACAACAAAAATCAAAAGAAAGAAGT 57.512 25.926 0.00 0.00 0.00 3.01
2241 4895 3.617540 TGCCGAACACACAACTTATTG 57.382 42.857 0.00 0.00 41.98 1.90
2318 4973 8.232913 ACAAATAAAAGTGAGGAAGTTAGCAA 57.767 30.769 0.00 0.00 0.00 3.91
2399 5214 6.586344 AGACACTTCTCAAGACAATTCTCAA 58.414 36.000 0.00 0.00 0.00 3.02
2401 5216 6.704512 GAGACACTTCTCAAGACAATTCTC 57.295 41.667 0.00 0.00 46.84 2.87
2662 6047 3.589881 CCGCCAGCCATAGCAAGC 61.590 66.667 0.00 0.00 43.56 4.01
2721 6111 8.764524 AGCTAGCATATTGTACTTAGCATTAC 57.235 34.615 18.83 0.00 0.00 1.89
2747 7629 6.027749 GCGCAACAAAGTTATATACAAAGCT 58.972 36.000 0.30 0.00 0.00 3.74
2748 7630 6.027749 AGCGCAACAAAGTTATATACAAAGC 58.972 36.000 11.47 0.00 0.00 3.51
2749 7631 7.373441 GCTAGCGCAACAAAGTTATATACAAAG 59.627 37.037 11.47 0.00 35.78 2.77
2751 7633 6.537301 AGCTAGCGCAACAAAGTTATATACAA 59.463 34.615 11.47 0.00 39.10 2.41
2753 7635 6.526566 AGCTAGCGCAACAAAGTTATATAC 57.473 37.500 11.47 0.00 39.10 1.47
2754 7636 9.350357 GTATAGCTAGCGCAACAAAGTTATATA 57.650 33.333 11.47 0.00 39.10 0.86
2755 7637 7.870954 TGTATAGCTAGCGCAACAAAGTTATAT 59.129 33.333 11.47 0.00 39.10 0.86
2757 7639 6.018994 GTGTATAGCTAGCGCAACAAAGTTAT 60.019 38.462 11.47 8.90 39.10 1.89
2758 7640 5.290158 GTGTATAGCTAGCGCAACAAAGTTA 59.710 40.000 11.47 1.52 39.10 2.24
2759 7641 4.092968 GTGTATAGCTAGCGCAACAAAGTT 59.907 41.667 11.47 0.00 39.10 2.66
2761 7643 3.301835 CGTGTATAGCTAGCGCAACAAAG 60.302 47.826 11.47 12.01 39.10 2.77
2762 7644 2.601314 CGTGTATAGCTAGCGCAACAAA 59.399 45.455 11.47 0.00 39.10 2.83
2763 7645 2.190161 CGTGTATAGCTAGCGCAACAA 58.810 47.619 11.47 0.00 39.10 2.83
2764 7646 1.835121 CGTGTATAGCTAGCGCAACA 58.165 50.000 11.47 11.64 39.10 3.33
2765 7647 0.503117 GCGTGTATAGCTAGCGCAAC 59.497 55.000 21.47 9.09 46.23 4.17
2766 7648 2.881441 GCGTGTATAGCTAGCGCAA 58.119 52.632 21.47 0.00 46.23 4.85
2767 7649 4.628160 GCGTGTATAGCTAGCGCA 57.372 55.556 21.47 1.25 46.23 6.09
2822 7705 5.487433 CCTGTATGTGTACATGAGGTTGAA 58.513 41.667 0.00 0.00 39.93 2.69
2855 7738 2.220313 AGAGCGTCGTATAGGACTTCC 58.780 52.381 20.14 10.43 34.75 3.46
2856 7739 3.967203 AAGAGCGTCGTATAGGACTTC 57.033 47.619 20.14 16.87 34.75 3.01
2857 7740 3.734293 GCAAAGAGCGTCGTATAGGACTT 60.734 47.826 20.14 10.49 34.75 3.01
2858 7741 2.223525 GCAAAGAGCGTCGTATAGGACT 60.224 50.000 20.14 5.67 34.75 3.85
2859 7742 2.117910 GCAAAGAGCGTCGTATAGGAC 58.882 52.381 14.29 14.29 0.00 3.85
2860 7743 2.486951 GCAAAGAGCGTCGTATAGGA 57.513 50.000 0.00 0.00 0.00 2.94
2871 7754 1.717645 CAGCATTTTGACGCAAAGAGC 59.282 47.619 15.85 15.85 34.72 4.09
2872 7755 2.322161 CCAGCATTTTGACGCAAAGAG 58.678 47.619 5.42 4.36 34.72 2.85
2873 7756 1.000385 CCCAGCATTTTGACGCAAAGA 60.000 47.619 5.42 0.00 34.72 2.52
2874 7757 1.421382 CCCAGCATTTTGACGCAAAG 58.579 50.000 5.42 0.00 34.72 2.77
2875 7758 0.033228 CCCCAGCATTTTGACGCAAA 59.967 50.000 1.63 1.63 0.00 3.68
2876 7759 1.664873 CCCCAGCATTTTGACGCAA 59.335 52.632 0.00 0.00 0.00 4.85
2877 7760 2.929903 GCCCCAGCATTTTGACGCA 61.930 57.895 0.00 0.00 39.53 5.24
2878 7761 2.125952 GCCCCAGCATTTTGACGC 60.126 61.111 0.00 0.00 39.53 5.19
2879 7762 0.109132 GAAGCCCCAGCATTTTGACG 60.109 55.000 0.00 0.00 43.56 4.35
2880 7763 0.109132 CGAAGCCCCAGCATTTTGAC 60.109 55.000 0.00 0.00 43.56 3.18
2881 7764 2.266070 CGAAGCCCCAGCATTTTGA 58.734 52.632 0.00 0.00 43.56 2.69
2882 7765 4.895854 CGAAGCCCCAGCATTTTG 57.104 55.556 0.00 0.00 43.56 2.44
2899 7782 0.510359 CAAACTGAGACGCTCTGTGC 59.490 55.000 15.92 0.00 40.75 4.57
2900 7783 0.510359 GCAAACTGAGACGCTCTGTG 59.490 55.000 15.92 8.87 40.75 3.66
2901 7784 0.941463 CGCAAACTGAGACGCTCTGT 60.941 55.000 11.56 11.56 42.82 3.41
2902 7785 1.621301 CCGCAAACTGAGACGCTCTG 61.621 60.000 10.57 10.57 35.91 3.35
2903 7786 1.373497 CCGCAAACTGAGACGCTCT 60.373 57.895 8.07 0.00 0.00 4.09
2904 7787 2.383527 CCCGCAAACTGAGACGCTC 61.384 63.158 0.00 0.58 0.00 5.03
2905 7788 2.357517 CCCGCAAACTGAGACGCT 60.358 61.111 0.00 0.00 0.00 5.07
2906 7789 4.090057 GCCCGCAAACTGAGACGC 62.090 66.667 0.00 0.00 0.00 5.19
2907 7790 1.507141 AAAGCCCGCAAACTGAGACG 61.507 55.000 0.00 0.00 0.00 4.18
2908 7791 0.040067 CAAAGCCCGCAAACTGAGAC 60.040 55.000 0.00 0.00 0.00 3.36
2909 7792 0.465460 ACAAAGCCCGCAAACTGAGA 60.465 50.000 0.00 0.00 0.00 3.27
2910 7793 0.318107 CACAAAGCCCGCAAACTGAG 60.318 55.000 0.00 0.00 0.00 3.35
2911 7794 1.732917 CACAAAGCCCGCAAACTGA 59.267 52.632 0.00 0.00 0.00 3.41
2912 7795 1.300080 CCACAAAGCCCGCAAACTG 60.300 57.895 0.00 0.00 0.00 3.16
2913 7796 2.498056 CCCACAAAGCCCGCAAACT 61.498 57.895 0.00 0.00 0.00 2.66
2914 7797 2.028925 CCCACAAAGCCCGCAAAC 59.971 61.111 0.00 0.00 0.00 2.93
2915 7798 3.922640 GCCCACAAAGCCCGCAAA 61.923 61.111 0.00 0.00 0.00 3.68
2922 7805 2.318519 AAAAACCCGGCCCACAAAGC 62.319 55.000 0.00 0.00 0.00 3.51
2923 7806 1.826709 AAAAACCCGGCCCACAAAG 59.173 52.632 0.00 0.00 0.00 2.77
2924 7807 4.051932 AAAAACCCGGCCCACAAA 57.948 50.000 0.00 0.00 0.00 2.83
2948 7831 1.886886 TTTTTGGAGCCACTCGGTAC 58.113 50.000 0.00 0.00 33.28 3.34
2975 7858 4.208746 CCTTCTCTCCACTACGGAATAGT 58.791 47.826 0.00 0.00 45.75 2.12
2976 7859 3.004944 GCCTTCTCTCCACTACGGAATAG 59.995 52.174 0.00 0.00 45.75 1.73
2977 7860 2.957006 GCCTTCTCTCCACTACGGAATA 59.043 50.000 0.00 0.00 45.75 1.75
2978 7861 1.757699 GCCTTCTCTCCACTACGGAAT 59.242 52.381 0.00 0.00 45.75 3.01
2979 7862 1.183549 GCCTTCTCTCCACTACGGAA 58.816 55.000 0.00 0.00 45.75 4.30
2980 7863 1.030488 CGCCTTCTCTCCACTACGGA 61.030 60.000 0.00 0.00 43.61 4.69
2981 7864 1.030488 TCGCCTTCTCTCCACTACGG 61.030 60.000 0.00 0.00 0.00 4.02
2982 7865 1.025812 ATCGCCTTCTCTCCACTACG 58.974 55.000 0.00 0.00 0.00 3.51
2983 7866 2.950309 TGTATCGCCTTCTCTCCACTAC 59.050 50.000 0.00 0.00 0.00 2.73
2984 7867 3.292492 TGTATCGCCTTCTCTCCACTA 57.708 47.619 0.00 0.00 0.00 2.74
2985 7868 2.145397 TGTATCGCCTTCTCTCCACT 57.855 50.000 0.00 0.00 0.00 4.00
2986 7869 2.541556 GTTGTATCGCCTTCTCTCCAC 58.458 52.381 0.00 0.00 0.00 4.02
2987 7870 1.480954 GGTTGTATCGCCTTCTCTCCA 59.519 52.381 0.00 0.00 0.00 3.86
2988 7871 1.480954 TGGTTGTATCGCCTTCTCTCC 59.519 52.381 0.00 0.00 0.00 3.71
2989 7872 2.930682 GTTGGTTGTATCGCCTTCTCTC 59.069 50.000 0.00 0.00 0.00 3.20
2990 7873 2.567615 AGTTGGTTGTATCGCCTTCTCT 59.432 45.455 0.00 0.00 0.00 3.10
2991 7874 2.673368 CAGTTGGTTGTATCGCCTTCTC 59.327 50.000 0.00 0.00 0.00 2.87
2992 7875 2.301870 TCAGTTGGTTGTATCGCCTTCT 59.698 45.455 0.00 0.00 0.00 2.85
2993 7876 2.673368 CTCAGTTGGTTGTATCGCCTTC 59.327 50.000 0.00 0.00 0.00 3.46
2994 7877 2.699954 CTCAGTTGGTTGTATCGCCTT 58.300 47.619 0.00 0.00 0.00 4.35
2995 7878 1.676014 GCTCAGTTGGTTGTATCGCCT 60.676 52.381 0.00 0.00 0.00 5.52
2996 7879 0.727398 GCTCAGTTGGTTGTATCGCC 59.273 55.000 0.00 0.00 0.00 5.54
2997 7880 1.726853 AGCTCAGTTGGTTGTATCGC 58.273 50.000 0.00 0.00 0.00 4.58
2998 7881 3.859961 CACTAGCTCAGTTGGTTGTATCG 59.140 47.826 0.00 0.00 34.26 2.92
2999 7882 5.073311 TCACTAGCTCAGTTGGTTGTATC 57.927 43.478 0.00 0.00 34.26 2.24
3000 7883 4.621747 GCTCACTAGCTCAGTTGGTTGTAT 60.622 45.833 0.00 0.00 45.85 2.29
3001 7884 3.306088 GCTCACTAGCTCAGTTGGTTGTA 60.306 47.826 0.00 0.00 45.85 2.41
3002 7885 2.548920 GCTCACTAGCTCAGTTGGTTGT 60.549 50.000 0.00 0.00 45.85 3.32
3003 7886 2.072298 GCTCACTAGCTCAGTTGGTTG 58.928 52.381 0.00 0.00 45.85 3.77
3004 7887 2.464157 GCTCACTAGCTCAGTTGGTT 57.536 50.000 0.00 0.00 45.85 3.67
3013 7896 9.513780 TGAAATAATCACCGATGCTCACTAGCT 62.514 40.741 0.00 0.00 40.50 3.32
3014 7897 7.450159 TGAAATAATCACCGATGCTCACTAGC 61.450 42.308 0.00 0.00 40.36 3.42
3015 7898 5.985530 TGAAATAATCACCGATGCTCACTAG 59.014 40.000 0.00 0.00 31.50 2.57
3016 7899 5.912892 TGAAATAATCACCGATGCTCACTA 58.087 37.500 0.00 0.00 31.50 2.74
3017 7900 4.769688 TGAAATAATCACCGATGCTCACT 58.230 39.130 0.00 0.00 31.50 3.41
3034 7917 8.357402 GGTTCTTAATAGTTGGTGTTGTGAAAT 58.643 33.333 0.00 0.00 0.00 2.17
3035 7918 7.339721 TGGTTCTTAATAGTTGGTGTTGTGAAA 59.660 33.333 0.00 0.00 0.00 2.69
3036 7919 6.829298 TGGTTCTTAATAGTTGGTGTTGTGAA 59.171 34.615 0.00 0.00 0.00 3.18
3037 7920 6.358178 TGGTTCTTAATAGTTGGTGTTGTGA 58.642 36.000 0.00 0.00 0.00 3.58
3038 7921 6.627395 TGGTTCTTAATAGTTGGTGTTGTG 57.373 37.500 0.00 0.00 0.00 3.33
3039 7922 7.340999 ACTTTGGTTCTTAATAGTTGGTGTTGT 59.659 33.333 0.00 0.00 0.00 3.32
3040 7923 7.712797 ACTTTGGTTCTTAATAGTTGGTGTTG 58.287 34.615 0.00 0.00 0.00 3.33
3041 7924 7.013942 GGACTTTGGTTCTTAATAGTTGGTGTT 59.986 37.037 0.00 0.00 0.00 3.32
3042 7925 6.489022 GGACTTTGGTTCTTAATAGTTGGTGT 59.511 38.462 0.00 0.00 0.00 4.16
3043 7926 6.488683 TGGACTTTGGTTCTTAATAGTTGGTG 59.511 38.462 0.00 0.00 0.00 4.17
3044 7927 6.607019 TGGACTTTGGTTCTTAATAGTTGGT 58.393 36.000 0.00 0.00 0.00 3.67
3045 7928 6.349363 GCTGGACTTTGGTTCTTAATAGTTGG 60.349 42.308 0.00 0.00 0.00 3.77
3046 7929 6.206634 TGCTGGACTTTGGTTCTTAATAGTTG 59.793 38.462 0.00 0.00 0.00 3.16
3047 7930 6.206829 GTGCTGGACTTTGGTTCTTAATAGTT 59.793 38.462 0.00 0.00 0.00 2.24
3048 7931 5.705905 GTGCTGGACTTTGGTTCTTAATAGT 59.294 40.000 0.00 0.00 0.00 2.12
3049 7932 5.705441 TGTGCTGGACTTTGGTTCTTAATAG 59.295 40.000 0.00 0.00 0.00 1.73
3050 7933 5.626142 TGTGCTGGACTTTGGTTCTTAATA 58.374 37.500 0.00 0.00 0.00 0.98
3051 7934 4.469657 TGTGCTGGACTTTGGTTCTTAAT 58.530 39.130 0.00 0.00 0.00 1.40
3052 7935 3.882888 CTGTGCTGGACTTTGGTTCTTAA 59.117 43.478 0.00 0.00 0.00 1.85
3053 7936 3.135712 TCTGTGCTGGACTTTGGTTCTTA 59.864 43.478 0.00 0.00 0.00 2.10
3054 7937 2.092429 TCTGTGCTGGACTTTGGTTCTT 60.092 45.455 0.00 0.00 0.00 2.52
3055 7938 1.490490 TCTGTGCTGGACTTTGGTTCT 59.510 47.619 0.00 0.00 0.00 3.01
3056 7939 1.967319 TCTGTGCTGGACTTTGGTTC 58.033 50.000 0.00 0.00 0.00 3.62
3057 7940 2.664402 ATCTGTGCTGGACTTTGGTT 57.336 45.000 0.00 0.00 0.00 3.67
3058 7941 2.624838 CAAATCTGTGCTGGACTTTGGT 59.375 45.455 0.00 0.00 0.00 3.67
3059 7942 2.886523 TCAAATCTGTGCTGGACTTTGG 59.113 45.455 10.87 0.00 0.00 3.28
3060 7943 4.276678 TCTTCAAATCTGTGCTGGACTTTG 59.723 41.667 0.00 3.79 0.00 2.77
3061 7944 4.464008 TCTTCAAATCTGTGCTGGACTTT 58.536 39.130 0.00 0.00 0.00 2.66
3062 7945 4.090761 TCTTCAAATCTGTGCTGGACTT 57.909 40.909 0.00 0.00 0.00 3.01
3063 7946 3.777106 TCTTCAAATCTGTGCTGGACT 57.223 42.857 0.00 0.00 0.00 3.85
3064 7947 5.382618 AATTCTTCAAATCTGTGCTGGAC 57.617 39.130 0.00 0.00 0.00 4.02
3065 7948 5.771666 AGAAATTCTTCAAATCTGTGCTGGA 59.228 36.000 0.00 0.00 33.64 3.86
3066 7949 5.862323 CAGAAATTCTTCAAATCTGTGCTGG 59.138 40.000 0.00 0.00 34.29 4.85
3067 7950 6.675026 TCAGAAATTCTTCAAATCTGTGCTG 58.325 36.000 0.00 0.00 38.83 4.41
3068 7951 6.889301 TCAGAAATTCTTCAAATCTGTGCT 57.111 33.333 0.00 0.00 38.83 4.40
3069 7952 7.935338 TTTCAGAAATTCTTCAAATCTGTGC 57.065 32.000 0.00 0.00 38.83 4.57
3078 7961 9.814899 TGCTTTTGTAATTTCAGAAATTCTTCA 57.185 25.926 22.02 16.60 41.16 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.