Multiple sequence alignment - TraesCS6A01G055900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G055900 chr6A 100.000 2375 0 0 1 2375 29492351 29489977 0.000000e+00 4386.0
1 TraesCS6A01G055900 chr6A 95.522 402 16 1 1976 2375 471890111 471890512 1.990000e-180 641.0
2 TraesCS6A01G055900 chr6A 95.739 399 15 1 1979 2375 591701764 591702162 1.990000e-180 641.0
3 TraesCS6A01G055900 chr1A 94.495 654 29 1 817 1470 482779293 482778647 0.000000e+00 1002.0
4 TraesCS6A01G055900 chr1A 96.231 398 13 1 1980 2375 576265727 576266124 0.000000e+00 651.0
5 TraesCS6A01G055900 chr1A 95.980 398 13 2 1980 2375 52431386 52431782 0.000000e+00 643.0
6 TraesCS6A01G055900 chr1A 95.970 397 14 1 1980 2374 566676161 566676557 0.000000e+00 643.0
7 TraesCS6A01G055900 chr1A 91.463 164 12 2 324 485 106220552 106220715 8.540000e-55 224.0
8 TraesCS6A01G055900 chr1A 89.349 169 13 3 324 490 487486299 487486464 8.600000e-50 207.0
9 TraesCS6A01G055900 chr6D 94.754 629 31 1 189 815 28413636 28414264 0.000000e+00 977.0
10 TraesCS6A01G055900 chr6D 92.105 532 24 10 1465 1979 28414262 28414792 0.000000e+00 734.0
11 TraesCS6A01G055900 chr6D 93.158 190 13 0 1 190 28413414 28413603 1.800000e-71 279.0
12 TraesCS6A01G055900 chr6D 90.419 167 13 2 322 486 431160832 431160667 1.430000e-52 217.0
13 TraesCS6A01G055900 chr6D 76.944 373 52 22 1620 1971 27861746 27861387 5.210000e-42 182.0
14 TraesCS6A01G055900 chr6D 80.087 231 36 6 1749 1976 28302646 28302869 1.890000e-36 163.0
15 TraesCS6A01G055900 chr6D 75.741 371 60 20 1531 1875 27761658 27761292 2.440000e-35 159.0
16 TraesCS6A01G055900 chr6D 74.501 451 64 32 1465 1875 27731118 27730679 5.290000e-32 148.0
17 TraesCS6A01G055900 chr6D 90.164 61 6 0 1803 1863 29221984 29221924 1.960000e-11 80.5
18 TraesCS6A01G055900 chrUn 94.118 629 32 2 189 815 80232537 80233162 0.000000e+00 952.0
19 TraesCS6A01G055900 chrUn 90.857 525 29 11 1465 1972 80233160 80233682 0.000000e+00 686.0
20 TraesCS6A01G055900 chrUn 91.964 112 9 0 1 112 80232184 80232295 8.790000e-35 158.0
21 TraesCS6A01G055900 chrUn 94.872 78 4 0 113 190 80232427 80232504 3.210000e-24 122.0
22 TraesCS6A01G055900 chr7A 95.980 398 14 1 1980 2375 23368292 23368689 0.000000e+00 645.0
23 TraesCS6A01G055900 chr7A 95.980 398 15 1 1979 2375 299440602 299440999 0.000000e+00 645.0
24 TraesCS6A01G055900 chr7A 82.677 127 22 0 811 937 117350851 117350977 1.930000e-21 113.0
25 TraesCS6A01G055900 chr5A 95.750 400 15 1 1978 2375 554598702 554599101 0.000000e+00 643.0
26 TraesCS6A01G055900 chr5A 87.171 304 37 2 815 1117 564953260 564953562 6.280000e-91 344.0
27 TraesCS6A01G055900 chr5A 88.263 213 24 1 1259 1470 564955133 564955345 1.090000e-63 254.0
28 TraesCS6A01G055900 chr3A 95.074 406 16 3 1972 2375 12752637 12753040 9.260000e-179 636.0
29 TraesCS6A01G055900 chr3B 78.383 569 98 16 812 1377 241278169 241278715 1.750000e-91 346.0
30 TraesCS6A01G055900 chr6B 91.018 167 12 2 326 490 232734980 232734815 3.070000e-54 222.0
31 TraesCS6A01G055900 chr6B 90.361 166 14 2 325 488 36133503 36133668 1.430000e-52 217.0
32 TraesCS6A01G055900 chr6B 83.243 185 25 4 1760 1941 52358733 52358914 5.250000e-37 165.0
33 TraesCS6A01G055900 chr6B 88.136 59 7 0 1803 1861 60088813 60088871 1.180000e-08 71.3
34 TraesCS6A01G055900 chr1B 82.288 271 29 7 812 1079 217747102 217746848 1.430000e-52 217.0
35 TraesCS6A01G055900 chr4B 90.000 170 12 4 320 485 182666185 182666353 5.140000e-52 215.0
36 TraesCS6A01G055900 chr4D 89.349 169 16 1 319 485 421331065 421331233 6.650000e-51 211.0
37 TraesCS6A01G055900 chr2B 80.000 240 31 10 812 1049 385779245 385779469 6.790000e-36 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G055900 chr6A 29489977 29492351 2374 True 4386.000000 4386 100.00000 1 2375 1 chr6A.!!$R1 2374
1 TraesCS6A01G055900 chr1A 482778647 482779293 646 True 1002.000000 1002 94.49500 817 1470 1 chr1A.!!$R1 653
2 TraesCS6A01G055900 chr6D 28413414 28414792 1378 False 663.333333 977 93.33900 1 1979 3 chr6D.!!$F2 1978
3 TraesCS6A01G055900 chrUn 80232184 80233682 1498 False 479.500000 952 92.95275 1 1972 4 chrUn.!!$F1 1971
4 TraesCS6A01G055900 chr5A 564953260 564955345 2085 False 299.000000 344 87.71700 815 1470 2 chr5A.!!$F2 655
5 TraesCS6A01G055900 chr3B 241278169 241278715 546 False 346.000000 346 78.38300 812 1377 1 chr3B.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.17576 TGCAGCGTAGAGGGTTGATC 59.824 55.0 0.0 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 3641 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.0 15.81 0.0 43.2 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.175760 TGCAGCGTAGAGGGTTGATC 59.824 55.000 0.00 0.00 0.00 2.92
63 64 6.398517 CGCGTGAAGGATACAAAATGAAAAAC 60.399 38.462 0.00 0.00 41.41 2.43
64 65 6.128929 GCGTGAAGGATACAAAATGAAAAACC 60.129 38.462 0.00 0.00 41.41 3.27
86 87 2.349886 CACATCGCAGAAGCTAGTTTCC 59.650 50.000 14.95 1.21 43.58 3.13
92 93 2.898705 CAGAAGCTAGTTTCCGCATCT 58.101 47.619 14.95 0.00 34.87 2.90
105 106 0.725686 CGCATCTCAGCAACCAGAAG 59.274 55.000 0.00 0.00 0.00 2.85
112 113 2.746362 CTCAGCAACCAGAAGACCATTC 59.254 50.000 0.00 0.00 0.00 2.67
170 302 9.315363 TCAAACCATTTTGTACTATTTACCCAT 57.685 29.630 0.00 0.00 42.51 4.00
216 382 7.697691 ACATTAGCTTCGTCATAAGGAAATTG 58.302 34.615 0.00 0.00 0.00 2.32
217 383 7.552687 ACATTAGCTTCGTCATAAGGAAATTGA 59.447 33.333 0.00 0.00 0.00 2.57
350 516 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
378 544 9.126151 CCTTTAGAGATCTCAATACAGACTACA 57.874 37.037 24.39 0.00 0.00 2.74
445 613 4.830600 TGCTCCGTATGTAGTCCATATTGA 59.169 41.667 0.00 0.00 38.29 2.57
451 619 8.647796 TCCGTATGTAGTCCATATTGAAATCTT 58.352 33.333 0.00 0.00 38.29 2.40
518 686 7.555554 CACATTCTCCAGTATTTTCTCCATCTT 59.444 37.037 0.00 0.00 0.00 2.40
561 729 4.124970 ACCAACGGTTCAGAACTTTAGAC 58.875 43.478 13.13 0.00 27.29 2.59
713 881 2.323999 TCCACCTCGTAGGGGTTTAA 57.676 50.000 5.98 0.00 36.94 1.52
725 893 7.314393 TCGTAGGGGTTTAATTTTTACAATGC 58.686 34.615 0.00 0.00 0.00 3.56
740 908 0.676736 AATGCCCGAGCTAGCTAGTC 59.323 55.000 19.38 15.67 40.80 2.59
743 911 2.034607 CCCGAGCTAGCTAGTCACC 58.965 63.158 19.38 2.66 0.00 4.02
812 980 9.745018 CAAGGGATCATAAACCATCATATTACT 57.255 33.333 0.00 0.00 0.00 2.24
839 1007 3.353836 TTTGGTTCGAGCAGCGGC 61.354 61.111 0.00 0.00 41.33 6.53
921 1089 0.736053 GTGTTTGGTTCACGCAAGGA 59.264 50.000 0.00 0.00 46.39 3.36
969 1137 0.389757 GGCCGGTCCTGTAGAAGATC 59.610 60.000 1.90 0.00 0.00 2.75
970 1138 1.112113 GCCGGTCCTGTAGAAGATCA 58.888 55.000 1.90 0.00 0.00 2.92
971 1139 1.689273 GCCGGTCCTGTAGAAGATCAT 59.311 52.381 1.90 0.00 0.00 2.45
1101 1272 4.467084 GGCGGCGAAGGGACATCA 62.467 66.667 12.98 0.00 0.00 3.07
1107 1278 2.268920 GAAGGGACATCAGCGGCA 59.731 61.111 1.45 0.00 0.00 5.69
1240 2582 1.839994 GTTCATGGTGGAGGGAGATCA 59.160 52.381 0.00 0.00 0.00 2.92
1241 2583 2.441001 GTTCATGGTGGAGGGAGATCAT 59.559 50.000 0.00 0.00 0.00 2.45
1242 2584 2.333069 TCATGGTGGAGGGAGATCATC 58.667 52.381 0.00 0.00 0.00 2.92
1243 2585 1.001746 CATGGTGGAGGGAGATCATCG 59.998 57.143 0.00 0.00 0.00 3.84
1244 2586 0.760567 TGGTGGAGGGAGATCATCGG 60.761 60.000 0.00 0.00 0.00 4.18
1245 2587 1.369321 GTGGAGGGAGATCATCGGC 59.631 63.158 0.00 0.00 0.00 5.54
1246 2588 2.203082 TGGAGGGAGATCATCGGCG 61.203 63.158 0.00 0.00 0.00 6.46
1287 2889 0.515564 CCGCGGTGAAGAAAACGATT 59.484 50.000 19.50 0.00 0.00 3.34
1303 2905 1.475280 CGATTCGGAAGAGTGGTGGTA 59.525 52.381 0.00 0.00 43.69 3.25
1309 2911 5.687166 TCGGAAGAGTGGTGGTATTATTT 57.313 39.130 0.00 0.00 34.84 1.40
1378 2980 7.566760 TTGCGATTACATGGTATCTGAAATT 57.433 32.000 0.00 0.00 0.00 1.82
1428 3030 0.821517 ATCGTGAGCCGGTGTAATCA 59.178 50.000 1.90 0.00 37.11 2.57
1437 3039 1.825474 CCGGTGTAATCAGGAGACAGT 59.175 52.381 0.00 0.00 0.00 3.55
1453 3055 1.607628 ACAGTGTAGAAGTCGCGAACT 59.392 47.619 12.06 13.50 41.10 3.01
1477 3079 1.266891 CGCGTCGTTAATGCTTTCTCC 60.267 52.381 0.00 0.00 37.78 3.71
1594 3197 5.327091 AGATTGAAATTCATGACGAAAGCG 58.673 37.500 0.00 0.00 44.79 4.68
1689 3292 8.846943 ATTGAAGTAATTAGACACATGACACA 57.153 30.769 0.00 0.00 0.00 3.72
1690 3293 8.846943 TTGAAGTAATTAGACACATGACACAT 57.153 30.769 0.00 0.00 0.00 3.21
1691 3294 9.936759 TTGAAGTAATTAGACACATGACACATA 57.063 29.630 0.00 0.00 0.00 2.29
1692 3295 9.586435 TGAAGTAATTAGACACATGACACATAG 57.414 33.333 0.00 0.00 0.00 2.23
1693 3296 8.425577 AAGTAATTAGACACATGACACATAGC 57.574 34.615 0.00 0.00 0.00 2.97
1694 3297 7.786030 AGTAATTAGACACATGACACATAGCT 58.214 34.615 0.00 0.00 0.00 3.32
1834 3460 7.566709 CAGGCAACAATGAAATTTAGTTCAAC 58.433 34.615 0.00 0.00 39.21 3.18
1979 3605 5.061721 ACATGGGGAAAGAACACTAAAGT 57.938 39.130 0.00 0.00 0.00 2.66
1980 3606 9.551883 CCAACATGGGGAAAGAACACTAAAGTG 62.552 44.444 8.56 8.56 41.96 3.16
1991 3617 2.567985 CACTAAAGTGTTGGGGAACGT 58.432 47.619 1.81 0.00 40.96 3.99
1992 3618 3.731089 CACTAAAGTGTTGGGGAACGTA 58.269 45.455 1.81 0.00 40.96 3.57
1993 3619 3.744426 CACTAAAGTGTTGGGGAACGTAG 59.256 47.826 1.81 0.00 40.96 3.51
1994 3620 4.741536 CACTAAAGTGTTGGGGAACGTAGT 60.742 45.833 1.81 0.00 41.87 2.73
1995 3621 4.588528 ACTAAAGTGTTGGGGAACGTAGTA 59.411 41.667 0.00 0.00 45.00 1.82
1996 3622 4.420522 AAAGTGTTGGGGAACGTAGTAA 57.579 40.909 0.00 0.00 45.00 2.24
1997 3623 4.628963 AAGTGTTGGGGAACGTAGTAAT 57.371 40.909 0.00 0.00 45.00 1.89
1998 3624 4.628963 AGTGTTGGGGAACGTAGTAATT 57.371 40.909 0.00 0.00 45.00 1.40
1999 3625 4.976864 AGTGTTGGGGAACGTAGTAATTT 58.023 39.130 0.00 0.00 45.00 1.82
2000 3626 5.379187 AGTGTTGGGGAACGTAGTAATTTT 58.621 37.500 0.00 0.00 45.00 1.82
2001 3627 6.532826 AGTGTTGGGGAACGTAGTAATTTTA 58.467 36.000 0.00 0.00 45.00 1.52
2002 3628 6.997476 AGTGTTGGGGAACGTAGTAATTTTAA 59.003 34.615 0.00 0.00 45.00 1.52
2003 3629 7.501892 AGTGTTGGGGAACGTAGTAATTTTAAA 59.498 33.333 0.00 0.00 45.00 1.52
2004 3630 8.134261 GTGTTGGGGAACGTAGTAATTTTAAAA 58.866 33.333 2.51 2.51 45.00 1.52
2005 3631 8.689972 TGTTGGGGAACGTAGTAATTTTAAAAA 58.310 29.630 4.44 0.00 45.00 1.94
2022 3648 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
2023 3649 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
2024 3650 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
2025 3651 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
2026 3652 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
2027 3653 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
2028 3654 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
2029 3655 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
2030 3656 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
2031 3657 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
2032 3658 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
2033 3659 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
2034 3660 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
2035 3661 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
2036 3662 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
2037 3663 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
2038 3664 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
2039 3665 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
2040 3666 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
2041 3667 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
2042 3668 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
2043 3669 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
2044 3670 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
2045 3671 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
2046 3672 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
2047 3673 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
2048 3674 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
2049 3675 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
2050 3676 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
2051 3677 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
2052 3678 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
2053 3679 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
2054 3680 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
2055 3681 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
2056 3682 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
2057 3683 1.115467 CATAGCAACGAGAGGGGAGT 58.885 55.000 0.00 0.00 0.00 3.85
2058 3684 1.115467 ATAGCAACGAGAGGGGAGTG 58.885 55.000 0.00 0.00 0.00 3.51
2059 3685 0.251653 TAGCAACGAGAGGGGAGTGT 60.252 55.000 0.00 0.00 0.00 3.55
2060 3686 1.122019 AGCAACGAGAGGGGAGTGTT 61.122 55.000 0.00 0.00 0.00 3.32
2061 3687 0.951040 GCAACGAGAGGGGAGTGTTG 60.951 60.000 0.00 0.00 42.04 3.33
2062 3688 0.393077 CAACGAGAGGGGAGTGTTGT 59.607 55.000 0.00 0.00 36.17 3.32
2063 3689 0.680061 AACGAGAGGGGAGTGTTGTC 59.320 55.000 0.00 0.00 0.00 3.18
2064 3690 0.178958 ACGAGAGGGGAGTGTTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
2065 3691 1.075050 ACGAGAGGGGAGTGTTGTCTA 59.925 52.381 0.00 0.00 0.00 2.59
2066 3692 2.291670 ACGAGAGGGGAGTGTTGTCTAT 60.292 50.000 0.00 0.00 0.00 1.98
2067 3693 2.099921 CGAGAGGGGAGTGTTGTCTATG 59.900 54.545 0.00 0.00 0.00 2.23
2068 3694 3.100671 GAGAGGGGAGTGTTGTCTATGT 58.899 50.000 0.00 0.00 0.00 2.29
2069 3695 4.279145 GAGAGGGGAGTGTTGTCTATGTA 58.721 47.826 0.00 0.00 0.00 2.29
2070 3696 4.024670 AGAGGGGAGTGTTGTCTATGTAC 58.975 47.826 0.00 0.00 0.00 2.90
2071 3697 3.105283 AGGGGAGTGTTGTCTATGTACC 58.895 50.000 0.00 0.00 0.00 3.34
2072 3698 2.169978 GGGGAGTGTTGTCTATGTACCC 59.830 54.545 0.00 0.00 0.00 3.69
2073 3699 3.105283 GGGAGTGTTGTCTATGTACCCT 58.895 50.000 0.00 0.00 32.93 4.34
2074 3700 3.132467 GGGAGTGTTGTCTATGTACCCTC 59.868 52.174 0.00 0.00 32.93 4.30
2075 3701 3.181489 GGAGTGTTGTCTATGTACCCTCG 60.181 52.174 0.00 0.00 0.00 4.63
2076 3702 3.428532 AGTGTTGTCTATGTACCCTCGT 58.571 45.455 0.00 0.00 0.00 4.18
2077 3703 4.592942 AGTGTTGTCTATGTACCCTCGTA 58.407 43.478 0.00 0.00 0.00 3.43
2078 3704 4.639310 AGTGTTGTCTATGTACCCTCGTAG 59.361 45.833 0.00 0.00 0.00 3.51
2079 3705 4.637534 GTGTTGTCTATGTACCCTCGTAGA 59.362 45.833 0.00 0.00 34.71 2.59
2082 3708 2.805099 GTCTATGTACCCTCGTAGACCG 59.195 54.545 12.36 0.00 44.54 4.79
2083 3709 2.700371 TCTATGTACCCTCGTAGACCGA 59.300 50.000 0.00 0.00 45.00 4.69
2084 3710 2.425143 ATGTACCCTCGTAGACCGAA 57.575 50.000 0.00 0.00 46.75 4.30
2085 3711 1.742761 TGTACCCTCGTAGACCGAAG 58.257 55.000 0.00 0.00 46.75 3.79
2086 3712 0.380024 GTACCCTCGTAGACCGAAGC 59.620 60.000 0.00 0.00 46.75 3.86
2087 3713 1.091771 TACCCTCGTAGACCGAAGCG 61.092 60.000 0.00 0.00 46.75 4.68
2111 3737 3.484524 GTTGACGCAACGTAGAGGA 57.515 52.632 6.90 0.00 41.37 3.71
2112 3738 1.774639 GTTGACGCAACGTAGAGGAA 58.225 50.000 6.90 0.00 41.37 3.36
2113 3739 1.719780 GTTGACGCAACGTAGAGGAAG 59.280 52.381 6.90 0.00 41.37 3.46
2114 3740 0.956633 TGACGCAACGTAGAGGAAGT 59.043 50.000 0.00 0.00 41.37 3.01
2115 3741 2.153645 TGACGCAACGTAGAGGAAGTA 58.846 47.619 0.00 0.00 41.37 2.24
2116 3742 2.161012 TGACGCAACGTAGAGGAAGTAG 59.839 50.000 0.00 0.00 41.37 2.57
2117 3743 2.157738 ACGCAACGTAGAGGAAGTAGT 58.842 47.619 0.00 0.00 38.73 2.73
2118 3744 2.161211 ACGCAACGTAGAGGAAGTAGTC 59.839 50.000 0.00 0.00 38.73 2.59
2119 3745 2.783333 GCAACGTAGAGGAAGTAGTCG 58.217 52.381 0.00 0.00 0.00 4.18
2120 3746 2.161211 GCAACGTAGAGGAAGTAGTCGT 59.839 50.000 0.00 0.00 0.00 4.34
2121 3747 3.372206 GCAACGTAGAGGAAGTAGTCGTA 59.628 47.826 0.00 0.00 0.00 3.43
2122 3748 4.726306 GCAACGTAGAGGAAGTAGTCGTAC 60.726 50.000 0.00 0.00 0.00 3.67
2123 3749 3.182967 ACGTAGAGGAAGTAGTCGTACG 58.817 50.000 9.53 9.53 37.23 3.67
2124 3750 3.182967 CGTAGAGGAAGTAGTCGTACGT 58.817 50.000 16.05 0.00 33.97 3.57
2125 3751 3.241784 CGTAGAGGAAGTAGTCGTACGTC 59.758 52.174 16.05 10.06 37.04 4.34
2126 3752 3.608316 AGAGGAAGTAGTCGTACGTCT 57.392 47.619 18.54 18.54 37.67 4.18
2127 3753 3.936564 AGAGGAAGTAGTCGTACGTCTT 58.063 45.455 19.61 16.11 37.67 3.01
2128 3754 4.322567 AGAGGAAGTAGTCGTACGTCTTT 58.677 43.478 19.61 9.45 37.67 2.52
2129 3755 4.391523 AGAGGAAGTAGTCGTACGTCTTTC 59.608 45.833 19.61 16.67 37.67 2.62
2130 3756 3.438434 AGGAAGTAGTCGTACGTCTTTCC 59.562 47.826 25.58 25.58 37.67 3.13
2131 3757 3.411751 GAAGTAGTCGTACGTCTTTCCG 58.588 50.000 19.61 0.00 35.45 4.30
2132 3758 1.734465 AGTAGTCGTACGTCTTTCCGG 59.266 52.381 19.61 0.00 33.97 5.14
2133 3759 1.464997 GTAGTCGTACGTCTTTCCGGT 59.535 52.381 19.61 0.00 0.00 5.28
2134 3760 0.519077 AGTCGTACGTCTTTCCGGTC 59.481 55.000 16.05 0.00 0.00 4.79
2135 3761 0.455126 GTCGTACGTCTTTCCGGTCC 60.455 60.000 16.05 0.00 0.00 4.46
2136 3762 0.888736 TCGTACGTCTTTCCGGTCCA 60.889 55.000 16.05 0.00 0.00 4.02
2137 3763 0.039256 CGTACGTCTTTCCGGTCCAA 60.039 55.000 7.22 0.00 0.00 3.53
2138 3764 1.422388 GTACGTCTTTCCGGTCCAAC 58.578 55.000 0.00 0.00 0.00 3.77
2139 3765 0.318120 TACGTCTTTCCGGTCCAACC 59.682 55.000 0.00 0.00 34.05 3.77
2148 3774 3.905249 GGTCCAACCGATCCAAGC 58.095 61.111 0.00 0.00 0.00 4.01
2149 3775 1.002624 GGTCCAACCGATCCAAGCA 60.003 57.895 0.00 0.00 0.00 3.91
2150 3776 1.305930 GGTCCAACCGATCCAAGCAC 61.306 60.000 0.00 0.00 0.00 4.40
2151 3777 1.002624 TCCAACCGATCCAAGCACC 60.003 57.895 0.00 0.00 0.00 5.01
2152 3778 2.398554 CCAACCGATCCAAGCACCG 61.399 63.158 0.00 0.00 0.00 4.94
2153 3779 1.671054 CAACCGATCCAAGCACCGT 60.671 57.895 0.00 0.00 0.00 4.83
2154 3780 1.072505 AACCGATCCAAGCACCGTT 59.927 52.632 0.00 0.00 0.00 4.44
2155 3781 0.322322 AACCGATCCAAGCACCGTTA 59.678 50.000 0.00 0.00 0.00 3.18
2156 3782 0.390735 ACCGATCCAAGCACCGTTAC 60.391 55.000 0.00 0.00 0.00 2.50
2157 3783 0.108329 CCGATCCAAGCACCGTTACT 60.108 55.000 0.00 0.00 0.00 2.24
2158 3784 1.278238 CGATCCAAGCACCGTTACTC 58.722 55.000 0.00 0.00 0.00 2.59
2159 3785 1.653151 GATCCAAGCACCGTTACTCC 58.347 55.000 0.00 0.00 0.00 3.85
2160 3786 0.108329 ATCCAAGCACCGTTACTCCG 60.108 55.000 0.00 0.00 0.00 4.63
2167 3793 2.183555 CCGTTACTCCGGCACCTC 59.816 66.667 0.00 0.00 41.78 3.85
2168 3794 2.183555 CGTTACTCCGGCACCTCC 59.816 66.667 0.00 0.00 0.00 4.30
2177 3803 2.266055 GGCACCTCCGAGTTCCTG 59.734 66.667 0.00 0.00 0.00 3.86
2178 3804 2.266055 GCACCTCCGAGTTCCTGG 59.734 66.667 0.00 0.00 0.00 4.45
2179 3805 2.266055 CACCTCCGAGTTCCTGGC 59.734 66.667 0.00 0.00 0.00 4.85
2180 3806 2.203788 ACCTCCGAGTTCCTGGCA 60.204 61.111 0.00 0.00 0.00 4.92
2181 3807 2.266055 CCTCCGAGTTCCTGGCAC 59.734 66.667 0.00 0.00 0.00 5.01
2182 3808 2.583441 CCTCCGAGTTCCTGGCACA 61.583 63.158 0.00 0.00 0.00 4.57
2183 3809 1.374758 CTCCGAGTTCCTGGCACAC 60.375 63.158 0.00 0.00 0.00 3.82
2184 3810 2.738521 CCGAGTTCCTGGCACACG 60.739 66.667 9.08 9.08 0.00 4.49
2185 3811 2.029073 CGAGTTCCTGGCACACGT 59.971 61.111 8.00 0.00 0.00 4.49
2186 3812 1.594293 CGAGTTCCTGGCACACGTT 60.594 57.895 8.00 0.00 0.00 3.99
2187 3813 1.557443 CGAGTTCCTGGCACACGTTC 61.557 60.000 8.00 0.00 0.00 3.95
2188 3814 0.531974 GAGTTCCTGGCACACGTTCA 60.532 55.000 0.00 0.00 0.00 3.18
2189 3815 0.532862 AGTTCCTGGCACACGTTCAG 60.533 55.000 0.00 0.00 0.00 3.02
2190 3816 1.891919 TTCCTGGCACACGTTCAGC 60.892 57.895 0.00 0.00 0.00 4.26
2191 3817 2.281070 CCTGGCACACGTTCAGCT 60.281 61.111 3.97 0.00 0.00 4.24
2192 3818 2.320587 CCTGGCACACGTTCAGCTC 61.321 63.158 3.97 0.00 0.00 4.09
2193 3819 2.661537 TGGCACACGTTCAGCTCG 60.662 61.111 3.97 0.00 0.00 5.03
2194 3820 2.355837 GGCACACGTTCAGCTCGA 60.356 61.111 0.00 0.00 0.00 4.04
2195 3821 1.738099 GGCACACGTTCAGCTCGAT 60.738 57.895 0.00 0.00 0.00 3.59
2196 3822 1.417592 GCACACGTTCAGCTCGATG 59.582 57.895 0.00 0.07 0.00 3.84
2197 3823 1.008875 GCACACGTTCAGCTCGATGA 61.009 55.000 0.00 0.00 0.00 2.92
2198 3824 0.710567 CACACGTTCAGCTCGATGAC 59.289 55.000 0.00 0.00 0.00 3.06
2199 3825 0.729478 ACACGTTCAGCTCGATGACG 60.729 55.000 0.00 4.93 41.26 4.35
2200 3826 1.801913 ACGTTCAGCTCGATGACGC 60.802 57.895 0.00 0.00 39.58 5.19
2201 3827 1.515088 CGTTCAGCTCGATGACGCT 60.515 57.895 0.00 0.00 39.58 5.07
2202 3828 1.467556 CGTTCAGCTCGATGACGCTC 61.468 60.000 0.00 0.00 39.58 5.03
2203 3829 1.139734 TTCAGCTCGATGACGCTCC 59.860 57.895 0.00 0.00 39.58 4.70
2204 3830 2.279120 CAGCTCGATGACGCTCCC 60.279 66.667 0.00 0.00 39.58 4.30
2205 3831 3.532155 AGCTCGATGACGCTCCCC 61.532 66.667 0.00 0.00 39.58 4.81
2206 3832 4.933064 GCTCGATGACGCTCCCCG 62.933 72.222 0.00 0.00 44.21 5.73
2207 3833 4.271816 CTCGATGACGCTCCCCGG 62.272 72.222 0.00 0.00 42.52 5.73
2223 3849 2.272146 GGGCTCCGATCCAGCAAA 59.728 61.111 12.26 0.00 38.77 3.68
2224 3850 1.378514 GGGCTCCGATCCAGCAAAA 60.379 57.895 12.26 0.00 38.77 2.44
2225 3851 1.657751 GGGCTCCGATCCAGCAAAAC 61.658 60.000 12.26 0.00 38.77 2.43
2226 3852 0.678048 GGCTCCGATCCAGCAAAACT 60.678 55.000 12.26 0.00 38.77 2.66
2227 3853 1.168714 GCTCCGATCCAGCAAAACTT 58.831 50.000 6.46 0.00 36.82 2.66
2228 3854 1.131315 GCTCCGATCCAGCAAAACTTC 59.869 52.381 6.46 0.00 36.82 3.01
2229 3855 2.426522 CTCCGATCCAGCAAAACTTCA 58.573 47.619 0.00 0.00 0.00 3.02
2230 3856 2.417933 CTCCGATCCAGCAAAACTTCAG 59.582 50.000 0.00 0.00 0.00 3.02
2231 3857 1.470098 CCGATCCAGCAAAACTTCAGG 59.530 52.381 0.00 0.00 0.00 3.86
2232 3858 1.470098 CGATCCAGCAAAACTTCAGGG 59.530 52.381 0.00 0.00 0.00 4.45
2233 3859 2.795329 GATCCAGCAAAACTTCAGGGA 58.205 47.619 0.00 0.00 0.00 4.20
2234 3860 2.276732 TCCAGCAAAACTTCAGGGAG 57.723 50.000 0.00 0.00 0.00 4.30
2235 3861 1.774254 TCCAGCAAAACTTCAGGGAGA 59.226 47.619 0.00 0.00 0.00 3.71
2236 3862 2.174639 TCCAGCAAAACTTCAGGGAGAA 59.825 45.455 0.00 0.00 34.41 2.87
2250 3876 1.363744 GGAGAAGTTCCATCAGCACG 58.636 55.000 0.00 0.00 46.01 5.34
2251 3877 1.066858 GGAGAAGTTCCATCAGCACGA 60.067 52.381 0.00 0.00 46.01 4.35
2252 3878 1.996191 GAGAAGTTCCATCAGCACGAC 59.004 52.381 0.00 0.00 0.00 4.34
2253 3879 0.716108 GAAGTTCCATCAGCACGACG 59.284 55.000 0.00 0.00 0.00 5.12
2254 3880 0.670546 AAGTTCCATCAGCACGACGG 60.671 55.000 0.00 0.00 0.00 4.79
2255 3881 2.434185 TTCCATCAGCACGACGGC 60.434 61.111 0.00 0.00 0.00 5.68
2256 3882 4.794439 TCCATCAGCACGACGGCG 62.794 66.667 10.39 10.39 44.79 6.46
2276 3902 3.999229 GTGGTGACGATCTTGATGTTC 57.001 47.619 0.00 0.00 0.00 3.18
2277 3903 3.325870 GTGGTGACGATCTTGATGTTCA 58.674 45.455 0.00 0.00 0.00 3.18
2278 3904 3.745975 GTGGTGACGATCTTGATGTTCAA 59.254 43.478 0.00 0.00 34.79 2.69
2279 3905 3.745975 TGGTGACGATCTTGATGTTCAAC 59.254 43.478 0.00 0.00 32.21 3.18
2280 3906 3.125316 GGTGACGATCTTGATGTTCAACC 59.875 47.826 0.00 0.00 32.21 3.77
2281 3907 3.745975 GTGACGATCTTGATGTTCAACCA 59.254 43.478 0.00 0.00 32.21 3.67
2282 3908 4.393062 GTGACGATCTTGATGTTCAACCAT 59.607 41.667 0.00 0.00 32.21 3.55
2283 3909 4.631377 TGACGATCTTGATGTTCAACCATC 59.369 41.667 0.00 0.00 41.32 3.51
2284 3910 3.618594 ACGATCTTGATGTTCAACCATCG 59.381 43.478 17.28 17.28 43.18 3.84
2285 3911 3.544834 CGATCTTGATGTTCAACCATCGC 60.545 47.826 11.15 0.00 43.39 4.58
2286 3912 2.777094 TCTTGATGTTCAACCATCGCA 58.223 42.857 0.00 0.00 43.39 5.10
2287 3913 2.743664 TCTTGATGTTCAACCATCGCAG 59.256 45.455 0.00 0.00 43.39 5.18
2288 3914 1.452110 TGATGTTCAACCATCGCAGG 58.548 50.000 0.00 0.00 43.39 4.85
2289 3915 0.734889 GATGTTCAACCATCGCAGGG 59.265 55.000 0.00 0.00 32.58 4.45
2290 3916 1.315257 ATGTTCAACCATCGCAGGGC 61.315 55.000 0.00 0.00 0.00 5.19
2291 3917 1.675641 GTTCAACCATCGCAGGGCT 60.676 57.895 0.00 0.00 0.00 5.19
2292 3918 1.074775 TTCAACCATCGCAGGGCTT 59.925 52.632 0.00 0.00 0.00 4.35
2293 3919 0.960364 TTCAACCATCGCAGGGCTTC 60.960 55.000 0.00 0.00 0.00 3.86
2294 3920 2.436646 AACCATCGCAGGGCTTCG 60.437 61.111 0.00 0.00 0.00 3.79
2307 3933 2.990479 CTTCGCCTAAGCACCCCT 59.010 61.111 0.00 0.00 39.83 4.79
2308 3934 2.208527 CTTCGCCTAAGCACCCCTA 58.791 57.895 0.00 0.00 39.83 3.53
2309 3935 0.179081 CTTCGCCTAAGCACCCCTAC 60.179 60.000 0.00 0.00 39.83 3.18
2310 3936 0.905809 TTCGCCTAAGCACCCCTACA 60.906 55.000 0.00 0.00 39.83 2.74
2311 3937 0.905809 TCGCCTAAGCACCCCTACAA 60.906 55.000 0.00 0.00 39.83 2.41
2312 3938 0.180406 CGCCTAAGCACCCCTACAAT 59.820 55.000 0.00 0.00 39.83 2.71
2313 3939 1.680338 GCCTAAGCACCCCTACAATG 58.320 55.000 0.00 0.00 39.53 2.82
2314 3940 1.064685 GCCTAAGCACCCCTACAATGT 60.065 52.381 0.00 0.00 39.53 2.71
2315 3941 2.643551 CCTAAGCACCCCTACAATGTG 58.356 52.381 0.00 0.00 0.00 3.21
2316 3942 2.238646 CCTAAGCACCCCTACAATGTGA 59.761 50.000 0.00 0.00 31.66 3.58
2317 3943 2.200373 AAGCACCCCTACAATGTGAC 57.800 50.000 0.00 0.00 31.66 3.67
2318 3944 1.362224 AGCACCCCTACAATGTGACT 58.638 50.000 0.00 0.00 31.66 3.41
2319 3945 1.003580 AGCACCCCTACAATGTGACTG 59.996 52.381 0.00 0.00 31.66 3.51
2320 3946 1.003118 GCACCCCTACAATGTGACTGA 59.997 52.381 0.00 0.00 31.66 3.41
2321 3947 2.936993 GCACCCCTACAATGTGACTGAG 60.937 54.545 0.00 0.00 31.66 3.35
2322 3948 1.909302 ACCCCTACAATGTGACTGAGG 59.091 52.381 0.00 0.00 0.00 3.86
2323 3949 1.909302 CCCCTACAATGTGACTGAGGT 59.091 52.381 0.00 0.00 0.00 3.85
2324 3950 2.355108 CCCCTACAATGTGACTGAGGTG 60.355 54.545 0.00 0.00 0.00 4.00
2325 3951 2.355108 CCCTACAATGTGACTGAGGTGG 60.355 54.545 0.00 0.00 0.00 4.61
2326 3952 2.567169 CCTACAATGTGACTGAGGTGGA 59.433 50.000 0.00 0.00 0.00 4.02
2327 3953 3.007940 CCTACAATGTGACTGAGGTGGAA 59.992 47.826 0.00 0.00 0.00 3.53
2328 3954 3.795688 ACAATGTGACTGAGGTGGAAT 57.204 42.857 0.00 0.00 0.00 3.01
2329 3955 4.908601 ACAATGTGACTGAGGTGGAATA 57.091 40.909 0.00 0.00 0.00 1.75
2330 3956 5.441718 ACAATGTGACTGAGGTGGAATAT 57.558 39.130 0.00 0.00 0.00 1.28
2331 3957 5.188434 ACAATGTGACTGAGGTGGAATATG 58.812 41.667 0.00 0.00 0.00 1.78
2332 3958 3.912496 TGTGACTGAGGTGGAATATGG 57.088 47.619 0.00 0.00 0.00 2.74
2333 3959 3.181329 TGTGACTGAGGTGGAATATGGT 58.819 45.455 0.00 0.00 0.00 3.55
2334 3960 3.055167 TGTGACTGAGGTGGAATATGGTG 60.055 47.826 0.00 0.00 0.00 4.17
2335 3961 2.505407 TGACTGAGGTGGAATATGGTGG 59.495 50.000 0.00 0.00 0.00 4.61
2336 3962 2.771943 GACTGAGGTGGAATATGGTGGA 59.228 50.000 0.00 0.00 0.00 4.02
2337 3963 2.774234 ACTGAGGTGGAATATGGTGGAG 59.226 50.000 0.00 0.00 0.00 3.86
2338 3964 2.105477 CTGAGGTGGAATATGGTGGAGG 59.895 54.545 0.00 0.00 0.00 4.30
2339 3965 1.421646 GAGGTGGAATATGGTGGAGGG 59.578 57.143 0.00 0.00 0.00 4.30
2340 3966 0.478507 GGTGGAATATGGTGGAGGGG 59.521 60.000 0.00 0.00 0.00 4.79
2341 3967 0.478507 GTGGAATATGGTGGAGGGGG 59.521 60.000 0.00 0.00 0.00 5.40
2363 3989 3.165498 CGCACACGGCTAAGGAAC 58.835 61.111 0.00 0.00 41.67 3.62
2364 3990 2.726691 CGCACACGGCTAAGGAACG 61.727 63.158 0.00 0.00 41.67 3.95
2365 3991 1.373748 GCACACGGCTAAGGAACGA 60.374 57.895 0.00 0.00 40.25 3.85
2366 3992 0.739813 GCACACGGCTAAGGAACGAT 60.740 55.000 0.00 0.00 40.25 3.73
2367 3993 1.278238 CACACGGCTAAGGAACGATC 58.722 55.000 0.00 0.00 0.00 3.69
2368 3994 0.892755 ACACGGCTAAGGAACGATCA 59.107 50.000 0.00 0.00 0.00 2.92
2369 3995 1.278238 CACGGCTAAGGAACGATCAC 58.722 55.000 0.00 0.00 0.00 3.06
2370 3996 0.179145 ACGGCTAAGGAACGATCACG 60.179 55.000 0.00 0.00 45.75 4.35
2371 3997 0.099968 CGGCTAAGGAACGATCACGA 59.900 55.000 0.00 0.00 42.66 4.35
2372 3998 1.468565 CGGCTAAGGAACGATCACGAA 60.469 52.381 0.00 0.00 42.66 3.85
2373 3999 2.194271 GGCTAAGGAACGATCACGAAG 58.806 52.381 0.00 0.00 42.66 3.79
2374 4000 2.159282 GGCTAAGGAACGATCACGAAGA 60.159 50.000 0.00 0.00 42.66 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.106683 CCTTCACGCGGGGATCAAC 61.107 63.158 9.32 0.00 0.00 3.18
35 36 0.391927 TTTGTATCCTTCACGCGGGG 60.392 55.000 9.32 5.89 0.00 5.73
40 41 6.364976 GGGTTTTTCATTTTGTATCCTTCACG 59.635 38.462 0.00 0.00 0.00 4.35
63 64 0.176680 ACTAGCTTCTGCGATGTGGG 59.823 55.000 0.00 0.00 45.42 4.61
64 65 2.015736 AACTAGCTTCTGCGATGTGG 57.984 50.000 0.00 0.00 45.42 4.17
86 87 0.725686 CTTCTGGTTGCTGAGATGCG 59.274 55.000 0.00 0.00 35.36 4.73
92 93 2.373169 AGAATGGTCTTCTGGTTGCTGA 59.627 45.455 0.00 0.00 0.00 4.26
105 106 3.371965 TCCACAGGTACCTAGAATGGTC 58.628 50.000 23.24 0.00 41.22 4.02
112 113 5.614324 TTGATTGATCCACAGGTACCTAG 57.386 43.478 15.80 11.72 0.00 3.02
164 296 5.191722 AGCTTCAATGTCTTTCCTATGGGTA 59.808 40.000 0.00 0.00 0.00 3.69
170 302 8.635765 AATGTTTAGCTTCAATGTCTTTCCTA 57.364 30.769 0.00 0.00 0.00 2.94
171 303 7.530426 AATGTTTAGCTTCAATGTCTTTCCT 57.470 32.000 0.00 0.00 0.00 3.36
216 382 9.696917 AGATGATTCAACTTGGTGTTTTTATTC 57.303 29.630 0.00 0.00 36.63 1.75
217 383 9.696917 GAGATGATTCAACTTGGTGTTTTTATT 57.303 29.630 0.00 0.00 36.63 1.40
254 420 9.003112 CATATGTTTCTATTGCTGTTTTCTTCG 57.997 33.333 0.00 0.00 0.00 3.79
318 484 4.670765 AGAAACGGAGGGAGTAGAAGTTA 58.329 43.478 0.00 0.00 0.00 2.24
350 516 7.358263 AGTCTGTATTGAGATCTCTAAAGGGA 58.642 38.462 22.95 11.78 0.00 4.20
417 585 5.601583 TGGACTACATACGGAGCAAAATA 57.398 39.130 0.00 0.00 0.00 1.40
474 642 4.913335 TGTGCTAATAGTACTTCCTCCG 57.087 45.455 0.00 0.00 31.77 4.63
561 729 1.049289 GTGTAGGGGCCTAGGAGGTG 61.049 65.000 14.75 0.00 37.80 4.00
698 866 7.451501 TTGTAAAAATTAAACCCCTACGAGG 57.548 36.000 0.00 0.00 34.30 4.63
713 881 3.066760 GCTAGCTCGGGCATTGTAAAAAT 59.933 43.478 11.40 0.00 41.70 1.82
725 893 0.752009 TGGTGACTAGCTAGCTCGGG 60.752 60.000 23.26 14.95 0.00 5.14
812 980 0.593518 TCGAACCAAACGCGTCGTAA 60.594 50.000 14.44 0.00 39.99 3.18
813 981 0.998226 CTCGAACCAAACGCGTCGTA 60.998 55.000 14.44 0.18 39.99 3.43
876 1044 6.270064 TCACGTATTCGCTTATCTTTGATCA 58.730 36.000 0.00 0.00 41.18 2.92
882 1050 5.348986 ACACATCACGTATTCGCTTATCTT 58.651 37.500 0.00 0.00 41.18 2.40
921 1089 1.692411 GGTGCCACTGTTTCCTCTTT 58.308 50.000 0.00 0.00 0.00 2.52
956 1124 3.138468 TCCCTCGATGATCTTCTACAGGA 59.862 47.826 14.76 9.50 0.00 3.86
958 1126 3.058570 CGTCCCTCGATGATCTTCTACAG 60.059 52.174 6.99 1.00 42.86 2.74
1287 2889 5.188163 TGAAATAATACCACCACTCTTCCGA 59.812 40.000 0.00 0.00 0.00 4.55
1303 2905 4.648651 GGTACAGCCCGGTATGAAATAAT 58.351 43.478 9.93 0.00 0.00 1.28
1309 2911 3.528853 CGGTACAGCCCGGTATGA 58.471 61.111 9.93 0.00 44.32 2.15
1378 2980 2.030981 GGCGTTTGTTTGGATTCGGTTA 60.031 45.455 0.00 0.00 0.00 2.85
1428 3030 1.813786 GCGACTTCTACACTGTCTCCT 59.186 52.381 0.00 0.00 0.00 3.69
1437 3039 3.228749 CGTTTAGTTCGCGACTTCTACA 58.771 45.455 9.15 2.62 39.86 2.74
1567 3170 9.294030 GCTTTCGTCATGAATTTCAATCTTTAT 57.706 29.630 2.68 0.00 36.22 1.40
1612 3215 2.153645 TGAACACATGAGCATGGTGAC 58.846 47.619 14.35 9.87 42.91 3.67
1689 3292 4.642885 GCTGTAGGCTGTAGCTATAGCTAT 59.357 45.833 32.97 25.52 45.26 2.97
1690 3293 4.011023 GCTGTAGGCTGTAGCTATAGCTA 58.989 47.826 32.97 27.09 44.11 3.32
1691 3294 2.823154 GCTGTAGGCTGTAGCTATAGCT 59.177 50.000 32.97 29.24 45.46 3.32
1692 3295 3.224884 GCTGTAGGCTGTAGCTATAGC 57.775 52.381 28.79 28.79 41.70 2.97
1880 3506 7.064847 TGTCTCGTTTAGCTTAGTTTTTGTCAA 59.935 33.333 0.00 0.00 0.00 3.18
1901 3527 2.674796 ATAACTCCTTGCGGTGTCTC 57.325 50.000 0.00 0.00 36.05 3.36
1916 3542 7.996644 TGTAATTCTTATGGTCTGGGGAATAAC 59.003 37.037 0.00 0.00 0.00 1.89
1919 3545 6.590656 TGTAATTCTTATGGTCTGGGGAAT 57.409 37.500 0.00 0.00 0.00 3.01
1922 3548 7.777910 TGTTTATGTAATTCTTATGGTCTGGGG 59.222 37.037 0.00 0.00 0.00 4.96
1929 3555 8.188139 GGTGTGGTGTTTATGTAATTCTTATGG 58.812 37.037 0.00 0.00 0.00 2.74
1979 3605 7.814264 TTTAAAATTACTACGTTCCCCAACA 57.186 32.000 0.00 0.00 32.14 3.33
2003 3629 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
2015 3641 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
2016 3642 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
2017 3643 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
2018 3644 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
2019 3645 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
2020 3646 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
2021 3647 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
2022 3648 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
2023 3649 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
2024 3650 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
2025 3651 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
2026 3652 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
2027 3653 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
2028 3654 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
2029 3655 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
2030 3656 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
2031 3657 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
2032 3658 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
2033 3659 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
2034 3660 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
2035 3661 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
2036 3662 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
2037 3663 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
2038 3664 1.115467 ACTCCCCTCTCGTTGCTATG 58.885 55.000 0.00 0.00 0.00 2.23
2039 3665 1.115467 CACTCCCCTCTCGTTGCTAT 58.885 55.000 0.00 0.00 0.00 2.97
2040 3666 0.251653 ACACTCCCCTCTCGTTGCTA 60.252 55.000 0.00 0.00 0.00 3.49
2041 3667 1.122019 AACACTCCCCTCTCGTTGCT 61.122 55.000 0.00 0.00 0.00 3.91
2042 3668 0.951040 CAACACTCCCCTCTCGTTGC 60.951 60.000 0.00 0.00 31.53 4.17
2043 3669 0.393077 ACAACACTCCCCTCTCGTTG 59.607 55.000 0.00 0.00 42.04 4.10
2044 3670 0.680061 GACAACACTCCCCTCTCGTT 59.320 55.000 0.00 0.00 0.00 3.85
2045 3671 0.178958 AGACAACACTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
2046 3672 1.835494 TAGACAACACTCCCCTCTCG 58.165 55.000 0.00 0.00 0.00 4.04
2047 3673 3.100671 ACATAGACAACACTCCCCTCTC 58.899 50.000 0.00 0.00 0.00 3.20
2048 3674 3.191888 ACATAGACAACACTCCCCTCT 57.808 47.619 0.00 0.00 0.00 3.69
2049 3675 3.132467 GGTACATAGACAACACTCCCCTC 59.868 52.174 0.00 0.00 0.00 4.30
2050 3676 3.105283 GGTACATAGACAACACTCCCCT 58.895 50.000 0.00 0.00 0.00 4.79
2051 3677 2.169978 GGGTACATAGACAACACTCCCC 59.830 54.545 0.00 0.00 0.00 4.81
2052 3678 3.105283 AGGGTACATAGACAACACTCCC 58.895 50.000 0.00 0.00 0.00 4.30
2053 3679 3.181489 CGAGGGTACATAGACAACACTCC 60.181 52.174 0.00 0.00 39.94 3.85
2054 3680 3.442977 ACGAGGGTACATAGACAACACTC 59.557 47.826 0.00 0.00 39.74 3.51
2055 3681 3.428532 ACGAGGGTACATAGACAACACT 58.571 45.455 0.00 0.00 0.00 3.55
2056 3682 3.863142 ACGAGGGTACATAGACAACAC 57.137 47.619 0.00 0.00 0.00 3.32
2057 3683 4.637534 GTCTACGAGGGTACATAGACAACA 59.362 45.833 12.11 0.00 42.02 3.33
2058 3684 4.036144 GGTCTACGAGGGTACATAGACAAC 59.964 50.000 15.98 3.77 43.51 3.32
2059 3685 4.202441 GGTCTACGAGGGTACATAGACAA 58.798 47.826 15.98 0.00 43.51 3.18
2060 3686 3.813443 GGTCTACGAGGGTACATAGACA 58.187 50.000 15.98 0.00 43.51 3.41
2081 3707 2.470286 GTCAACGCTTCCGCTTCG 59.530 61.111 0.00 0.00 38.22 3.79
2082 3708 2.470286 CGTCAACGCTTCCGCTTC 59.530 61.111 0.00 0.00 38.22 3.86
2093 3719 1.719780 CTTCCTCTACGTTGCGTCAAC 59.280 52.381 11.24 11.24 41.54 3.18
2094 3720 1.338973 ACTTCCTCTACGTTGCGTCAA 59.661 47.619 0.00 0.00 41.54 3.18
2095 3721 0.956633 ACTTCCTCTACGTTGCGTCA 59.043 50.000 0.00 0.00 41.54 4.35
2096 3722 2.161211 ACTACTTCCTCTACGTTGCGTC 59.839 50.000 0.00 0.00 41.54 5.19
2097 3723 2.157738 ACTACTTCCTCTACGTTGCGT 58.842 47.619 0.00 0.00 44.35 5.24
2098 3724 2.783333 GACTACTTCCTCTACGTTGCG 58.217 52.381 0.00 0.00 0.00 4.85
2099 3725 2.161211 ACGACTACTTCCTCTACGTTGC 59.839 50.000 0.00 0.00 0.00 4.17
2100 3726 4.491602 CGTACGACTACTTCCTCTACGTTG 60.492 50.000 10.44 0.00 34.52 4.10
2101 3727 3.614616 CGTACGACTACTTCCTCTACGTT 59.385 47.826 10.44 0.00 34.52 3.99
2102 3728 3.182967 CGTACGACTACTTCCTCTACGT 58.817 50.000 10.44 0.00 36.52 3.57
2103 3729 3.182967 ACGTACGACTACTTCCTCTACG 58.817 50.000 24.41 0.00 33.44 3.51
2104 3730 4.429108 AGACGTACGACTACTTCCTCTAC 58.571 47.826 24.41 0.00 0.00 2.59
2105 3731 4.727507 AGACGTACGACTACTTCCTCTA 57.272 45.455 24.41 0.00 0.00 2.43
2106 3732 3.608316 AGACGTACGACTACTTCCTCT 57.392 47.619 24.41 7.87 0.00 3.69
2107 3733 4.436718 GGAAAGACGTACGACTACTTCCTC 60.437 50.000 28.40 18.70 30.13 3.71
2108 3734 3.438434 GGAAAGACGTACGACTACTTCCT 59.562 47.826 28.40 11.16 30.13 3.36
2109 3735 3.726190 CGGAAAGACGTACGACTACTTCC 60.726 52.174 27.07 27.07 0.00 3.46
2110 3736 3.411751 CGGAAAGACGTACGACTACTTC 58.588 50.000 24.41 20.31 0.00 3.01
2111 3737 2.160417 CCGGAAAGACGTACGACTACTT 59.840 50.000 24.41 13.15 0.00 2.24
2112 3738 1.734465 CCGGAAAGACGTACGACTACT 59.266 52.381 24.41 11.91 0.00 2.57
2113 3739 1.464997 ACCGGAAAGACGTACGACTAC 59.535 52.381 24.41 17.29 0.00 2.73
2114 3740 1.732259 GACCGGAAAGACGTACGACTA 59.268 52.381 24.41 0.00 0.00 2.59
2115 3741 0.519077 GACCGGAAAGACGTACGACT 59.481 55.000 24.41 19.11 0.00 4.18
2116 3742 0.455126 GGACCGGAAAGACGTACGAC 60.455 60.000 24.41 16.77 0.00 4.34
2117 3743 0.888736 TGGACCGGAAAGACGTACGA 60.889 55.000 24.41 0.00 0.00 3.43
2118 3744 0.039256 TTGGACCGGAAAGACGTACG 60.039 55.000 15.01 15.01 0.00 3.67
2119 3745 1.422388 GTTGGACCGGAAAGACGTAC 58.578 55.000 9.46 0.00 0.00 3.67
2120 3746 0.318120 GGTTGGACCGGAAAGACGTA 59.682 55.000 9.46 0.00 0.00 3.57
2121 3747 1.070275 GGTTGGACCGGAAAGACGT 59.930 57.895 9.46 0.00 0.00 4.34
2122 3748 3.961729 GGTTGGACCGGAAAGACG 58.038 61.111 9.46 0.00 0.00 4.18
2131 3757 1.002624 TGCTTGGATCGGTTGGACC 60.003 57.895 0.00 0.00 34.05 4.46
2132 3758 1.305930 GGTGCTTGGATCGGTTGGAC 61.306 60.000 0.00 0.00 0.00 4.02
2133 3759 1.002624 GGTGCTTGGATCGGTTGGA 60.003 57.895 0.00 0.00 0.00 3.53
2134 3760 2.398554 CGGTGCTTGGATCGGTTGG 61.399 63.158 0.00 0.00 0.00 3.77
2135 3761 1.234615 AACGGTGCTTGGATCGGTTG 61.235 55.000 0.00 0.00 0.00 3.77
2136 3762 0.322322 TAACGGTGCTTGGATCGGTT 59.678 50.000 0.00 0.00 0.00 4.44
2137 3763 0.390735 GTAACGGTGCTTGGATCGGT 60.391 55.000 0.00 0.00 0.00 4.69
2138 3764 0.108329 AGTAACGGTGCTTGGATCGG 60.108 55.000 0.00 0.00 0.00 4.18
2139 3765 1.278238 GAGTAACGGTGCTTGGATCG 58.722 55.000 0.00 0.00 0.00 3.69
2140 3766 1.653151 GGAGTAACGGTGCTTGGATC 58.347 55.000 0.00 0.00 0.00 3.36
2141 3767 0.108329 CGGAGTAACGGTGCTTGGAT 60.108 55.000 0.00 0.00 0.00 3.41
2142 3768 1.290955 CGGAGTAACGGTGCTTGGA 59.709 57.895 0.00 0.00 0.00 3.53
2143 3769 3.870606 CGGAGTAACGGTGCTTGG 58.129 61.111 0.00 0.00 0.00 3.61
2151 3777 2.183555 GGAGGTGCCGGAGTAACG 59.816 66.667 5.05 0.00 0.00 3.18
2160 3786 2.266055 CAGGAACTCGGAGGTGCC 59.734 66.667 11.21 7.13 34.60 5.01
2161 3787 2.266055 CCAGGAACTCGGAGGTGC 59.734 66.667 6.43 6.43 34.60 5.01
2162 3788 2.266055 GCCAGGAACTCGGAGGTG 59.734 66.667 10.23 1.41 34.60 4.00
2163 3789 2.203788 TGCCAGGAACTCGGAGGT 60.204 61.111 10.23 1.51 34.60 3.85
2164 3790 2.266055 GTGCCAGGAACTCGGAGG 59.734 66.667 10.23 0.00 34.60 4.30
2165 3791 1.374758 GTGTGCCAGGAACTCGGAG 60.375 63.158 2.83 2.83 34.60 4.63
2166 3792 2.741092 GTGTGCCAGGAACTCGGA 59.259 61.111 0.00 0.00 34.60 4.55
2167 3793 2.738521 CGTGTGCCAGGAACTCGG 60.739 66.667 13.59 0.00 34.60 4.63
2168 3794 1.557443 GAACGTGTGCCAGGAACTCG 61.557 60.000 18.91 18.91 34.60 4.18
2169 3795 0.531974 TGAACGTGTGCCAGGAACTC 60.532 55.000 0.00 0.00 34.60 3.01
2170 3796 0.532862 CTGAACGTGTGCCAGGAACT 60.533 55.000 0.00 0.00 43.88 3.01
2171 3797 1.941812 CTGAACGTGTGCCAGGAAC 59.058 57.895 0.00 0.00 0.00 3.62
2172 3798 1.891919 GCTGAACGTGTGCCAGGAA 60.892 57.895 0.00 0.00 0.00 3.36
2173 3799 2.280797 GCTGAACGTGTGCCAGGA 60.281 61.111 0.00 0.00 0.00 3.86
2174 3800 2.281070 AGCTGAACGTGTGCCAGG 60.281 61.111 0.00 0.00 0.00 4.45
2175 3801 2.661566 CGAGCTGAACGTGTGCCAG 61.662 63.158 0.00 0.00 0.00 4.85
2176 3802 2.434658 ATCGAGCTGAACGTGTGCCA 62.435 55.000 0.00 0.00 0.00 4.92
2177 3803 1.738099 ATCGAGCTGAACGTGTGCC 60.738 57.895 0.00 0.00 0.00 5.01
2178 3804 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
2179 3805 0.710567 GTCATCGAGCTGAACGTGTG 59.289 55.000 0.00 0.00 0.00 3.82
2180 3806 0.729478 CGTCATCGAGCTGAACGTGT 60.729 55.000 0.00 0.00 39.71 4.49
2181 3807 1.983907 CGTCATCGAGCTGAACGTG 59.016 57.895 0.00 0.00 39.71 4.49
2182 3808 1.801913 GCGTCATCGAGCTGAACGT 60.802 57.895 0.00 0.00 39.71 3.99
2183 3809 1.467556 GAGCGTCATCGAGCTGAACG 61.468 60.000 1.10 4.56 44.69 3.95
2184 3810 1.142778 GGAGCGTCATCGAGCTGAAC 61.143 60.000 1.10 0.00 44.69 3.18
2185 3811 1.139734 GGAGCGTCATCGAGCTGAA 59.860 57.895 1.10 0.00 44.69 3.02
2186 3812 2.775856 GGGAGCGTCATCGAGCTGA 61.776 63.158 1.10 0.00 44.69 4.26
2187 3813 2.279120 GGGAGCGTCATCGAGCTG 60.279 66.667 1.10 0.00 44.69 4.24
2189 3815 4.933064 CGGGGAGCGTCATCGAGC 62.933 72.222 0.00 0.00 39.71 5.03
2190 3816 4.271816 CCGGGGAGCGTCATCGAG 62.272 72.222 0.00 0.00 39.71 4.04
2206 3832 1.378514 TTTTGCTGGATCGGAGCCC 60.379 57.895 10.23 0.92 35.43 5.19
2207 3833 0.678048 AGTTTTGCTGGATCGGAGCC 60.678 55.000 5.08 5.08 35.43 4.70
2208 3834 1.131315 GAAGTTTTGCTGGATCGGAGC 59.869 52.381 8.14 8.14 36.95 4.70
2209 3835 2.417933 CTGAAGTTTTGCTGGATCGGAG 59.582 50.000 0.00 0.00 0.00 4.63
2210 3836 2.426522 CTGAAGTTTTGCTGGATCGGA 58.573 47.619 0.00 0.00 0.00 4.55
2211 3837 1.470098 CCTGAAGTTTTGCTGGATCGG 59.530 52.381 0.00 0.00 0.00 4.18
2212 3838 1.470098 CCCTGAAGTTTTGCTGGATCG 59.530 52.381 0.00 0.00 0.00 3.69
2213 3839 2.751806 CTCCCTGAAGTTTTGCTGGATC 59.248 50.000 0.00 0.00 0.00 3.36
2214 3840 2.376518 TCTCCCTGAAGTTTTGCTGGAT 59.623 45.455 0.00 0.00 0.00 3.41
2215 3841 1.774254 TCTCCCTGAAGTTTTGCTGGA 59.226 47.619 0.00 0.00 0.00 3.86
2216 3842 2.276732 TCTCCCTGAAGTTTTGCTGG 57.723 50.000 0.00 0.00 0.00 4.85
2217 3843 3.911661 CTTCTCCCTGAAGTTTTGCTG 57.088 47.619 0.00 0.00 45.26 4.41
2226 3852 2.026822 GCTGATGGAACTTCTCCCTGAA 60.027 50.000 0.00 0.00 44.69 3.02
2227 3853 1.556911 GCTGATGGAACTTCTCCCTGA 59.443 52.381 0.00 0.00 44.69 3.86
2228 3854 1.280133 TGCTGATGGAACTTCTCCCTG 59.720 52.381 0.00 0.00 44.69 4.45
2229 3855 1.280421 GTGCTGATGGAACTTCTCCCT 59.720 52.381 0.00 0.00 44.69 4.20
2230 3856 1.743996 GTGCTGATGGAACTTCTCCC 58.256 55.000 0.00 0.00 44.69 4.30
2231 3857 1.066858 TCGTGCTGATGGAACTTCTCC 60.067 52.381 0.00 0.00 45.64 3.71
2232 3858 1.996191 GTCGTGCTGATGGAACTTCTC 59.004 52.381 0.00 0.00 0.00 2.87
2233 3859 1.670087 CGTCGTGCTGATGGAACTTCT 60.670 52.381 0.00 0.00 0.00 2.85
2234 3860 0.716108 CGTCGTGCTGATGGAACTTC 59.284 55.000 0.00 0.00 0.00 3.01
2235 3861 2.827604 CGTCGTGCTGATGGAACTT 58.172 52.632 0.00 0.00 0.00 2.66
2236 3862 4.578913 CGTCGTGCTGATGGAACT 57.421 55.556 0.00 0.00 0.00 3.01
2249 3875 4.771356 ATCGTCACCACGCCGTCG 62.771 66.667 0.00 0.00 46.28 5.12
2250 3876 2.814183 AAGATCGTCACCACGCCGTC 62.814 60.000 0.00 0.00 46.28 4.79
2251 3877 2.927580 AAGATCGTCACCACGCCGT 61.928 57.895 0.00 0.00 46.28 5.68
2252 3878 2.126071 AAGATCGTCACCACGCCG 60.126 61.111 0.00 0.00 46.28 6.46
2253 3879 0.460284 ATCAAGATCGTCACCACGCC 60.460 55.000 0.00 0.00 46.28 5.68
2254 3880 0.647410 CATCAAGATCGTCACCACGC 59.353 55.000 0.00 0.00 46.28 5.34
2255 3881 5.612786 TTGAACATCAAGATCGTCACCACG 61.613 45.833 0.00 0.00 38.36 4.94
2256 3882 3.325870 TGAACATCAAGATCGTCACCAC 58.674 45.455 0.00 0.00 0.00 4.16
2257 3883 3.676291 TGAACATCAAGATCGTCACCA 57.324 42.857 0.00 0.00 0.00 4.17
2258 3884 3.125316 GGTTGAACATCAAGATCGTCACC 59.875 47.826 0.00 0.00 37.00 4.02
2259 3885 3.745975 TGGTTGAACATCAAGATCGTCAC 59.254 43.478 0.00 0.00 37.00 3.67
2260 3886 4.001618 TGGTTGAACATCAAGATCGTCA 57.998 40.909 0.00 0.00 37.00 4.35
2261 3887 4.259970 CGATGGTTGAACATCAAGATCGTC 60.260 45.833 17.82 10.51 45.87 4.20
2262 3888 3.618594 CGATGGTTGAACATCAAGATCGT 59.381 43.478 17.82 5.13 45.87 3.73
2263 3889 3.544834 GCGATGGTTGAACATCAAGATCG 60.545 47.826 19.93 19.93 45.87 3.69
2264 3890 3.374988 TGCGATGGTTGAACATCAAGATC 59.625 43.478 9.48 0.00 45.87 2.75
2265 3891 3.346315 TGCGATGGTTGAACATCAAGAT 58.654 40.909 9.48 0.00 45.87 2.40
2266 3892 2.743664 CTGCGATGGTTGAACATCAAGA 59.256 45.455 9.48 0.00 45.87 3.02
2267 3893 2.159476 CCTGCGATGGTTGAACATCAAG 60.159 50.000 9.48 5.95 45.87 3.02
2268 3894 1.811965 CCTGCGATGGTTGAACATCAA 59.188 47.619 9.48 0.00 45.87 2.57
2269 3895 1.452110 CCTGCGATGGTTGAACATCA 58.548 50.000 9.48 0.00 45.87 3.07
2270 3896 0.734889 CCCTGCGATGGTTGAACATC 59.265 55.000 0.00 0.00 42.93 3.06
2271 3897 1.315257 GCCCTGCGATGGTTGAACAT 61.315 55.000 0.00 0.00 0.00 2.71
2272 3898 1.971167 GCCCTGCGATGGTTGAACA 60.971 57.895 0.00 0.00 0.00 3.18
2273 3899 1.244019 AAGCCCTGCGATGGTTGAAC 61.244 55.000 0.00 0.00 0.00 3.18
2274 3900 0.960364 GAAGCCCTGCGATGGTTGAA 60.960 55.000 0.00 0.00 0.00 2.69
2275 3901 1.377202 GAAGCCCTGCGATGGTTGA 60.377 57.895 0.00 0.00 0.00 3.18
2276 3902 2.753966 CGAAGCCCTGCGATGGTTG 61.754 63.158 0.00 0.00 0.00 3.77
2277 3903 2.436646 CGAAGCCCTGCGATGGTT 60.437 61.111 0.00 0.00 0.00 3.67
2290 3916 0.179081 GTAGGGGTGCTTAGGCGAAG 60.179 60.000 2.68 2.68 42.25 3.79
2291 3917 0.905809 TGTAGGGGTGCTTAGGCGAA 60.906 55.000 0.00 0.00 42.25 4.70
2292 3918 0.905809 TTGTAGGGGTGCTTAGGCGA 60.906 55.000 0.00 0.00 42.25 5.54
2293 3919 0.180406 ATTGTAGGGGTGCTTAGGCG 59.820 55.000 0.00 0.00 42.25 5.52
2294 3920 1.064685 ACATTGTAGGGGTGCTTAGGC 60.065 52.381 0.00 0.00 39.26 3.93
2295 3921 2.238646 TCACATTGTAGGGGTGCTTAGG 59.761 50.000 0.00 0.00 32.69 2.69
2296 3922 3.055094 AGTCACATTGTAGGGGTGCTTAG 60.055 47.826 0.00 0.00 32.69 2.18
2297 3923 2.910319 AGTCACATTGTAGGGGTGCTTA 59.090 45.455 0.00 0.00 32.69 3.09
2298 3924 1.705186 AGTCACATTGTAGGGGTGCTT 59.295 47.619 0.00 0.00 32.69 3.91
2299 3925 1.003580 CAGTCACATTGTAGGGGTGCT 59.996 52.381 0.00 0.00 32.69 4.40
2300 3926 1.003118 TCAGTCACATTGTAGGGGTGC 59.997 52.381 0.00 0.00 32.69 5.01
2301 3927 2.355108 CCTCAGTCACATTGTAGGGGTG 60.355 54.545 0.00 0.00 0.00 4.61
2302 3928 1.909302 CCTCAGTCACATTGTAGGGGT 59.091 52.381 0.00 0.00 0.00 4.95
2303 3929 1.909302 ACCTCAGTCACATTGTAGGGG 59.091 52.381 7.33 2.35 0.00 4.79
2304 3930 2.355108 CCACCTCAGTCACATTGTAGGG 60.355 54.545 7.33 0.00 0.00 3.53
2305 3931 2.567169 TCCACCTCAGTCACATTGTAGG 59.433 50.000 1.73 1.73 0.00 3.18
2306 3932 3.961480 TCCACCTCAGTCACATTGTAG 57.039 47.619 0.00 0.00 0.00 2.74
2307 3933 4.908601 ATTCCACCTCAGTCACATTGTA 57.091 40.909 0.00 0.00 0.00 2.41
2308 3934 3.795688 ATTCCACCTCAGTCACATTGT 57.204 42.857 0.00 0.00 0.00 2.71
2309 3935 4.577693 CCATATTCCACCTCAGTCACATTG 59.422 45.833 0.00 0.00 0.00 2.82
2310 3936 4.228210 ACCATATTCCACCTCAGTCACATT 59.772 41.667 0.00 0.00 0.00 2.71
2311 3937 3.782523 ACCATATTCCACCTCAGTCACAT 59.217 43.478 0.00 0.00 0.00 3.21
2312 3938 3.055167 CACCATATTCCACCTCAGTCACA 60.055 47.826 0.00 0.00 0.00 3.58
2313 3939 3.535561 CACCATATTCCACCTCAGTCAC 58.464 50.000 0.00 0.00 0.00 3.67
2314 3940 2.505407 CCACCATATTCCACCTCAGTCA 59.495 50.000 0.00 0.00 0.00 3.41
2315 3941 2.771943 TCCACCATATTCCACCTCAGTC 59.228 50.000 0.00 0.00 0.00 3.51
2316 3942 2.774234 CTCCACCATATTCCACCTCAGT 59.226 50.000 0.00 0.00 0.00 3.41
2317 3943 2.105477 CCTCCACCATATTCCACCTCAG 59.895 54.545 0.00 0.00 0.00 3.35
2318 3944 2.126882 CCTCCACCATATTCCACCTCA 58.873 52.381 0.00 0.00 0.00 3.86
2319 3945 1.421646 CCCTCCACCATATTCCACCTC 59.578 57.143 0.00 0.00 0.00 3.85
2320 3946 1.522900 CCCTCCACCATATTCCACCT 58.477 55.000 0.00 0.00 0.00 4.00
2321 3947 0.478507 CCCCTCCACCATATTCCACC 59.521 60.000 0.00 0.00 0.00 4.61
2322 3948 0.478507 CCCCCTCCACCATATTCCAC 59.521 60.000 0.00 0.00 0.00 4.02
2323 3949 2.959201 CCCCCTCCACCATATTCCA 58.041 57.895 0.00 0.00 0.00 3.53
2347 3973 0.739813 ATCGTTCCTTAGCCGTGTGC 60.740 55.000 0.00 0.00 41.71 4.57
2348 3974 1.278238 GATCGTTCCTTAGCCGTGTG 58.722 55.000 0.00 0.00 0.00 3.82
2349 3975 0.892755 TGATCGTTCCTTAGCCGTGT 59.107 50.000 0.00 0.00 0.00 4.49
2350 3976 1.278238 GTGATCGTTCCTTAGCCGTG 58.722 55.000 0.00 0.00 0.00 4.94
2351 3977 0.179145 CGTGATCGTTCCTTAGCCGT 60.179 55.000 0.00 0.00 0.00 5.68
2352 3978 0.099968 TCGTGATCGTTCCTTAGCCG 59.900 55.000 0.00 0.00 38.33 5.52
2353 3979 2.159282 TCTTCGTGATCGTTCCTTAGCC 60.159 50.000 0.00 0.00 38.33 3.93
2354 3980 3.146618 TCTTCGTGATCGTTCCTTAGC 57.853 47.619 0.00 0.00 38.33 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.