Multiple sequence alignment - TraesCS6A01G055600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G055600 chr6A 100.000 2815 0 0 689 3503 29333822 29331008 0.000000e+00 5199
1 TraesCS6A01G055600 chr6A 82.528 807 129 11 2703 3503 2366504 2365704 0.000000e+00 699
2 TraesCS6A01G055600 chr6A 100.000 346 0 0 1 346 29334510 29334165 1.060000e-179 640
3 TraesCS6A01G055600 chr6A 85.287 401 50 8 995 1393 27133041 27132648 4.210000e-109 405
4 TraesCS6A01G055600 chr6A 83.880 366 37 11 1 346 539873222 539872859 2.610000e-86 329
5 TraesCS6A01G055600 chrUn 90.367 1796 124 13 1720 3498 309219840 309218077 0.000000e+00 2313
6 TraesCS6A01G055600 chrUn 90.200 1796 127 13 1720 3498 344593307 344591544 0.000000e+00 2296
7 TraesCS6A01G055600 chrUn 93.340 1036 48 13 989 2024 103377174 103378188 0.000000e+00 1511
8 TraesCS6A01G055600 chrUn 87.020 886 109 4 1509 2393 96381005 96380125 0.000000e+00 994
9 TraesCS6A01G055600 chrUn 86.436 693 90 3 1700 2392 96356804 96356116 0.000000e+00 756
10 TraesCS6A01G055600 chrUn 86.861 137 3 4 776 907 103376732 103376858 4.710000e-29 139
11 TraesCS6A01G055600 chrUn 98.507 67 1 0 689 755 103376227 103376293 6.140000e-23 119
12 TraesCS6A01G055600 chr6B 93.086 1186 59 8 1720 2897 53735140 53736310 0.000000e+00 1714
13 TraesCS6A01G055600 chr6B 93.086 1186 59 8 1720 2897 53746258 53747428 0.000000e+00 1714
14 TraesCS6A01G055600 chr6B 89.001 791 43 15 947 1718 53733370 53734135 0.000000e+00 939
15 TraesCS6A01G055600 chr6B 89.001 791 43 15 947 1718 53745458 53746223 0.000000e+00 939
16 TraesCS6A01G055600 chr6B 80.000 665 96 29 996 1646 47463621 47462980 1.150000e-124 457
17 TraesCS6A01G055600 chr6B 83.594 384 52 8 2007 2383 47457359 47456980 2.000000e-92 350
18 TraesCS6A01G055600 chr6B 83.230 161 27 0 1857 2017 47457701 47457541 7.830000e-32 148
19 TraesCS6A01G055600 chr6D 84.481 799 114 9 2710 3503 391685355 391684562 0.000000e+00 780
20 TraesCS6A01G055600 chr6D 84.348 345 28 4 1 345 43183375 43183693 7.300000e-82 315
21 TraesCS6A01G055600 chr7D 83.131 824 129 9 2685 3503 604993502 604992684 0.000000e+00 743
22 TraesCS6A01G055600 chr7D 87.360 356 12 10 1 346 581478820 581478488 9.180000e-101 377
23 TraesCS6A01G055600 chr7D 87.390 341 19 9 5 345 480046977 480046661 1.540000e-98 370
24 TraesCS6A01G055600 chr7D 87.390 341 18 10 1 340 635870308 635870624 5.520000e-98 368
25 TraesCS6A01G055600 chr5B 83.066 809 121 14 2703 3503 19112176 19112976 0.000000e+00 721
26 TraesCS6A01G055600 chr2D 82.979 799 127 8 2710 3503 630617907 630617113 0.000000e+00 713
27 TraesCS6A01G055600 chr2D 90.975 277 23 1 5 281 628185006 628185280 4.270000e-99 372
28 TraesCS6A01G055600 chr2D 85.549 346 23 9 1 346 30676722 30677040 1.560000e-88 337
29 TraesCS6A01G055600 chr1A 82.857 805 128 9 2703 3502 14598659 14599458 0.000000e+00 713
30 TraesCS6A01G055600 chr3B 82.711 804 128 10 2708 3503 257316231 257317031 0.000000e+00 704
31 TraesCS6A01G055600 chr7A 82.690 803 125 13 2703 3498 609435842 609435047 0.000000e+00 701
32 TraesCS6A01G055600 chr3D 82.117 822 136 11 2688 3502 200432651 200431834 0.000000e+00 693
33 TraesCS6A01G055600 chr1D 90.202 347 20 8 1 346 417585091 417584758 1.150000e-119 440
34 TraesCS6A01G055600 chr1D 88.202 356 32 3 1 346 490474010 490474365 1.950000e-112 416
35 TraesCS6A01G055600 chr1D 91.573 178 13 2 1 177 5530274 5530098 9.710000e-61 244
36 TraesCS6A01G055600 chr5D 88.920 352 18 6 5 346 449252497 449252157 7.000000e-112 414
37 TraesCS6A01G055600 chr5D 90.417 240 16 2 5 238 281221334 281221096 3.400000e-80 309
38 TraesCS6A01G055600 chr5D 84.559 272 19 7 86 346 519333462 519333203 7.510000e-62 248
39 TraesCS6A01G055600 chr4B 87.320 347 38 6 2 346 191657228 191656886 3.280000e-105 392
40 TraesCS6A01G055600 chr4D 85.879 347 24 9 1 346 475044241 475043919 2.590000e-91 346
41 TraesCS6A01G055600 chr4D 83.333 360 37 14 7 346 479448089 479448445 9.440000e-81 311
42 TraesCS6A01G055600 chr7B 89.412 255 27 0 92 346 552440079 552439825 4.360000e-84 322
43 TraesCS6A01G055600 chr2A 90.991 222 19 1 125 346 754690124 754689904 7.350000e-77 298
44 TraesCS6A01G055600 chr3A 80.441 363 34 19 1 344 57330125 57329781 3.490000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G055600 chr6A 29331008 29334510 3502 True 2919.500000 5199 100.000000 1 3503 2 chr6A.!!$R4 3502
1 TraesCS6A01G055600 chr6A 2365704 2366504 800 True 699.000000 699 82.528000 2703 3503 1 chr6A.!!$R1 800
2 TraesCS6A01G055600 chrUn 309218077 309219840 1763 True 2313.000000 2313 90.367000 1720 3498 1 chrUn.!!$R3 1778
3 TraesCS6A01G055600 chrUn 344591544 344593307 1763 True 2296.000000 2296 90.200000 1720 3498 1 chrUn.!!$R4 1778
4 TraesCS6A01G055600 chrUn 96380125 96381005 880 True 994.000000 994 87.020000 1509 2393 1 chrUn.!!$R2 884
5 TraesCS6A01G055600 chrUn 96356116 96356804 688 True 756.000000 756 86.436000 1700 2392 1 chrUn.!!$R1 692
6 TraesCS6A01G055600 chrUn 103376227 103378188 1961 False 589.666667 1511 92.902667 689 2024 3 chrUn.!!$F1 1335
7 TraesCS6A01G055600 chr6B 53733370 53736310 2940 False 1326.500000 1714 91.043500 947 2897 2 chr6B.!!$F1 1950
8 TraesCS6A01G055600 chr6B 53745458 53747428 1970 False 1326.500000 1714 91.043500 947 2897 2 chr6B.!!$F2 1950
9 TraesCS6A01G055600 chr6B 47462980 47463621 641 True 457.000000 457 80.000000 996 1646 1 chr6B.!!$R1 650
10 TraesCS6A01G055600 chr6B 47456980 47457701 721 True 249.000000 350 83.412000 1857 2383 2 chr6B.!!$R2 526
11 TraesCS6A01G055600 chr6D 391684562 391685355 793 True 780.000000 780 84.481000 2710 3503 1 chr6D.!!$R1 793
12 TraesCS6A01G055600 chr7D 604992684 604993502 818 True 743.000000 743 83.131000 2685 3503 1 chr7D.!!$R3 818
13 TraesCS6A01G055600 chr5B 19112176 19112976 800 False 721.000000 721 83.066000 2703 3503 1 chr5B.!!$F1 800
14 TraesCS6A01G055600 chr2D 630617113 630617907 794 True 713.000000 713 82.979000 2710 3503 1 chr2D.!!$R1 793
15 TraesCS6A01G055600 chr1A 14598659 14599458 799 False 713.000000 713 82.857000 2703 3502 1 chr1A.!!$F1 799
16 TraesCS6A01G055600 chr3B 257316231 257317031 800 False 704.000000 704 82.711000 2708 3503 1 chr3B.!!$F1 795
17 TraesCS6A01G055600 chr7A 609435047 609435842 795 True 701.000000 701 82.690000 2703 3498 1 chr7A.!!$R1 795
18 TraesCS6A01G055600 chr3D 200431834 200432651 817 True 693.000000 693 82.117000 2688 3502 1 chr3D.!!$R1 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.038526 GGGCCGATTCGTGTCGATAT 60.039 55.0 12.44 0.0 44.06 1.63 F
215 216 0.038526 ATTCGTGTCGATATCGGGCC 60.039 55.0 24.12 13.1 40.29 5.80 F
942 1438 0.107848 GCGTTATGTGTACCTGCCCT 60.108 55.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1468 2139 0.036577 CTGCTCCTCCACAGGTTGAG 60.037 60.000 0.00 0.00 41.28 3.02 R
1470 2141 1.002868 CCTGCTCCTCCACAGGTTG 60.003 63.158 0.79 0.00 46.95 3.77 R
2544 4430 0.107508 CAGATGCATCACGTTCCCCT 60.108 55.000 27.81 1.29 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.805267 CAGAATCTGGTGGAGCGC 58.195 61.111 0.00 0.00 0.00 5.92
18 19 1.817099 CAGAATCTGGTGGAGCGCC 60.817 63.158 2.29 0.00 34.12 6.53
19 20 1.992277 AGAATCTGGTGGAGCGCCT 60.992 57.895 8.34 0.00 34.70 5.52
20 21 0.687757 AGAATCTGGTGGAGCGCCTA 60.688 55.000 8.34 0.00 34.70 3.93
21 22 0.394565 GAATCTGGTGGAGCGCCTAT 59.605 55.000 8.34 0.00 34.70 2.57
22 23 0.107456 AATCTGGTGGAGCGCCTATG 59.893 55.000 8.34 0.00 34.70 2.23
23 24 1.762522 ATCTGGTGGAGCGCCTATGG 61.763 60.000 8.34 0.00 34.70 2.74
24 25 2.364973 TGGTGGAGCGCCTATGGA 60.365 61.111 8.34 0.00 34.70 3.41
25 26 2.374830 CTGGTGGAGCGCCTATGGAG 62.375 65.000 8.34 0.00 34.70 3.86
26 27 2.423446 GTGGAGCGCCTATGGAGG 59.577 66.667 8.34 0.00 46.93 4.30
36 37 3.386543 CTATGGAGGAACAAGGGCG 57.613 57.895 0.00 0.00 0.00 6.13
37 38 0.830648 CTATGGAGGAACAAGGGCGA 59.169 55.000 0.00 0.00 0.00 5.54
38 39 0.539986 TATGGAGGAACAAGGGCGAC 59.460 55.000 0.00 0.00 0.00 5.19
39 40 1.488705 ATGGAGGAACAAGGGCGACA 61.489 55.000 0.00 0.00 0.00 4.35
40 41 1.671379 GGAGGAACAAGGGCGACAC 60.671 63.158 0.00 0.00 0.00 3.67
41 42 1.671379 GAGGAACAAGGGCGACACC 60.671 63.158 0.00 0.00 37.93 4.16
42 43 2.113243 GAGGAACAAGGGCGACACCT 62.113 60.000 0.00 0.00 44.56 4.00
43 44 0.834687 AGGAACAAGGGCGACACCTA 60.835 55.000 0.00 0.00 40.87 3.08
44 45 0.391263 GGAACAAGGGCGACACCTAG 60.391 60.000 0.00 0.00 40.87 3.02
45 46 1.003718 AACAAGGGCGACACCTAGC 60.004 57.895 0.00 0.00 40.87 3.42
46 47 1.481056 AACAAGGGCGACACCTAGCT 61.481 55.000 0.00 0.00 40.87 3.32
47 48 1.153549 CAAGGGCGACACCTAGCTC 60.154 63.158 0.00 0.00 40.87 4.09
48 49 2.711922 AAGGGCGACACCTAGCTCG 61.712 63.158 0.00 0.00 40.87 5.03
49 50 3.138798 GGGCGACACCTAGCTCGA 61.139 66.667 0.00 0.00 39.10 4.04
50 51 2.102553 GGCGACACCTAGCTCGAC 59.897 66.667 0.00 0.81 34.51 4.20
51 52 2.277373 GCGACACCTAGCTCGACG 60.277 66.667 0.00 0.00 31.24 5.12
52 53 3.036783 GCGACACCTAGCTCGACGT 62.037 63.158 0.00 0.00 31.24 4.34
53 54 1.226046 CGACACCTAGCTCGACGTG 60.226 63.158 0.00 0.00 31.24 4.49
54 55 1.874562 GACACCTAGCTCGACGTGT 59.125 57.895 0.00 7.52 41.97 4.49
55 56 0.454620 GACACCTAGCTCGACGTGTG 60.455 60.000 11.42 0.00 39.47 3.82
56 57 0.887836 ACACCTAGCTCGACGTGTGA 60.888 55.000 0.00 0.00 38.02 3.58
57 58 0.452184 CACCTAGCTCGACGTGTGAT 59.548 55.000 0.00 0.00 0.00 3.06
58 59 0.452184 ACCTAGCTCGACGTGTGATG 59.548 55.000 0.00 0.00 0.00 3.07
59 60 0.733150 CCTAGCTCGACGTGTGATGA 59.267 55.000 0.00 0.00 0.00 2.92
60 61 1.132453 CCTAGCTCGACGTGTGATGAA 59.868 52.381 0.00 0.00 0.00 2.57
61 62 2.415491 CCTAGCTCGACGTGTGATGAAA 60.415 50.000 0.00 0.00 0.00 2.69
62 63 2.370281 AGCTCGACGTGTGATGAAAT 57.630 45.000 0.00 0.00 0.00 2.17
63 64 3.503827 AGCTCGACGTGTGATGAAATA 57.496 42.857 0.00 0.00 0.00 1.40
64 65 4.046938 AGCTCGACGTGTGATGAAATAT 57.953 40.909 0.00 0.00 0.00 1.28
65 66 3.798878 AGCTCGACGTGTGATGAAATATG 59.201 43.478 0.00 0.00 0.00 1.78
66 67 3.796717 GCTCGACGTGTGATGAAATATGA 59.203 43.478 0.00 0.00 0.00 2.15
67 68 4.085363 GCTCGACGTGTGATGAAATATGAG 60.085 45.833 0.00 0.00 0.00 2.90
68 69 4.993905 TCGACGTGTGATGAAATATGAGT 58.006 39.130 0.00 0.00 0.00 3.41
69 70 5.407502 TCGACGTGTGATGAAATATGAGTT 58.592 37.500 0.00 0.00 0.00 3.01
70 71 5.867174 TCGACGTGTGATGAAATATGAGTTT 59.133 36.000 0.00 0.00 0.00 2.66
71 72 6.367695 TCGACGTGTGATGAAATATGAGTTTT 59.632 34.615 0.00 0.00 0.00 2.43
72 73 7.015289 CGACGTGTGATGAAATATGAGTTTTT 58.985 34.615 0.00 0.00 0.00 1.94
73 74 8.166066 CGACGTGTGATGAAATATGAGTTTTTA 58.834 33.333 0.00 0.00 0.00 1.52
74 75 9.988350 GACGTGTGATGAAATATGAGTTTTTAT 57.012 29.630 0.00 0.00 0.00 1.40
115 116 9.762933 AATTTGTATTGAACTATTTGCTGTTGT 57.237 25.926 0.00 0.00 0.00 3.32
117 118 9.672086 TTTGTATTGAACTATTTGCTGTTGTAC 57.328 29.630 0.00 0.00 0.00 2.90
118 119 8.615878 TGTATTGAACTATTTGCTGTTGTACT 57.384 30.769 0.00 0.00 0.00 2.73
119 120 9.713713 TGTATTGAACTATTTGCTGTTGTACTA 57.286 29.630 0.00 0.00 0.00 1.82
123 124 9.891828 TTGAACTATTTGCTGTTGTACTATTTG 57.108 29.630 0.00 0.00 0.00 2.32
124 125 9.062524 TGAACTATTTGCTGTTGTACTATTTGT 57.937 29.630 0.00 0.00 0.00 2.83
125 126 9.893305 GAACTATTTGCTGTTGTACTATTTGTT 57.107 29.630 0.00 0.00 0.00 2.83
126 127 9.677567 AACTATTTGCTGTTGTACTATTTGTTG 57.322 29.630 0.00 0.00 0.00 3.33
127 128 9.062524 ACTATTTGCTGTTGTACTATTTGTTGA 57.937 29.630 0.00 0.00 0.00 3.18
128 129 9.891828 CTATTTGCTGTTGTACTATTTGTTGAA 57.108 29.630 0.00 0.00 0.00 2.69
129 130 7.979115 TTTGCTGTTGTACTATTTGTTGAAC 57.021 32.000 0.00 0.00 0.00 3.18
130 131 6.935741 TGCTGTTGTACTATTTGTTGAACT 57.064 33.333 0.00 0.00 0.00 3.01
131 132 8.439993 TTGCTGTTGTACTATTTGTTGAACTA 57.560 30.769 0.00 0.00 0.00 2.24
132 133 8.615878 TGCTGTTGTACTATTTGTTGAACTAT 57.384 30.769 0.00 0.00 0.00 2.12
133 134 9.062524 TGCTGTTGTACTATTTGTTGAACTATT 57.937 29.630 0.00 0.00 0.00 1.73
134 135 9.893305 GCTGTTGTACTATTTGTTGAACTATTT 57.107 29.630 0.00 0.00 0.00 1.40
160 161 9.708092 TTGATTTTTATTGATTTGCTGTGATGA 57.292 25.926 0.00 0.00 0.00 2.92
161 162 9.708092 TGATTTTTATTGATTTGCTGTGATGAA 57.292 25.926 0.00 0.00 0.00 2.57
167 168 9.738832 TTATTGATTTGCTGTGATGAATATGTG 57.261 29.630 0.00 0.00 0.00 3.21
168 169 7.393841 TTGATTTGCTGTGATGAATATGTGA 57.606 32.000 0.00 0.00 0.00 3.58
169 170 6.788243 TGATTTGCTGTGATGAATATGTGAC 58.212 36.000 0.00 0.00 0.00 3.67
170 171 6.374894 TGATTTGCTGTGATGAATATGTGACA 59.625 34.615 0.00 0.00 0.00 3.58
171 172 5.550232 TTGCTGTGATGAATATGTGACAC 57.450 39.130 0.00 0.00 0.00 3.67
172 173 4.577875 TGCTGTGATGAATATGTGACACA 58.422 39.130 11.41 11.41 36.90 3.72
173 174 5.002516 TGCTGTGATGAATATGTGACACAA 58.997 37.500 13.23 2.71 37.70 3.33
174 175 5.472820 TGCTGTGATGAATATGTGACACAAA 59.527 36.000 13.23 0.00 37.70 2.83
175 176 6.016443 TGCTGTGATGAATATGTGACACAAAA 60.016 34.615 13.23 4.36 37.70 2.44
176 177 6.862608 GCTGTGATGAATATGTGACACAAAAA 59.137 34.615 13.23 1.66 37.70 1.94
177 178 7.148918 GCTGTGATGAATATGTGACACAAAAAC 60.149 37.037 13.23 5.89 37.70 2.43
178 179 7.144661 TGTGATGAATATGTGACACAAAAACC 58.855 34.615 13.23 2.26 35.77 3.27
179 180 7.144661 GTGATGAATATGTGACACAAAAACCA 58.855 34.615 13.23 7.78 0.00 3.67
180 181 7.114811 GTGATGAATATGTGACACAAAAACCAC 59.885 37.037 13.23 10.78 0.00 4.16
181 182 5.515184 TGAATATGTGACACAAAAACCACG 58.485 37.500 13.23 0.00 32.58 4.94
182 183 2.202295 ATGTGACACAAAAACCACGC 57.798 45.000 13.23 0.00 32.58 5.34
183 184 0.171455 TGTGACACAAAAACCACGCC 59.829 50.000 5.62 0.00 32.58 5.68
184 185 0.863957 GTGACACAAAAACCACGCCG 60.864 55.000 0.00 0.00 0.00 6.46
185 186 1.025113 TGACACAAAAACCACGCCGA 61.025 50.000 0.00 0.00 0.00 5.54
186 187 0.099082 GACACAAAAACCACGCCGAA 59.901 50.000 0.00 0.00 0.00 4.30
187 188 0.741915 ACACAAAAACCACGCCGAAT 59.258 45.000 0.00 0.00 0.00 3.34
188 189 1.948145 ACACAAAAACCACGCCGAATA 59.052 42.857 0.00 0.00 0.00 1.75
189 190 2.554893 ACACAAAAACCACGCCGAATAT 59.445 40.909 0.00 0.00 0.00 1.28
190 191 2.914214 CACAAAAACCACGCCGAATATG 59.086 45.455 0.00 0.00 0.00 1.78
191 192 2.094957 ACAAAAACCACGCCGAATATGG 60.095 45.455 0.00 0.00 39.57 2.74
192 193 1.099689 AAAACCACGCCGAATATGGG 58.900 50.000 0.00 0.00 37.86 4.00
198 199 4.397348 GCCGAATATGGGCCGATT 57.603 55.556 5.24 0.02 44.97 3.34
199 200 2.171635 GCCGAATATGGGCCGATTC 58.828 57.895 17.03 17.03 44.97 2.52
201 202 3.210857 CGAATATGGGCCGATTCGT 57.789 52.632 30.46 7.16 45.87 3.85
202 203 0.790207 CGAATATGGGCCGATTCGTG 59.210 55.000 30.46 14.50 45.87 4.35
203 204 1.872237 CGAATATGGGCCGATTCGTGT 60.872 52.381 30.46 2.95 45.87 4.49
204 205 1.798813 GAATATGGGCCGATTCGTGTC 59.201 52.381 5.24 0.00 0.00 3.67
205 206 0.319555 ATATGGGCCGATTCGTGTCG 60.320 55.000 5.24 5.45 41.13 4.35
206 207 1.385756 TATGGGCCGATTCGTGTCGA 61.386 55.000 5.24 0.00 44.06 4.20
207 208 2.028125 ATGGGCCGATTCGTGTCGAT 62.028 55.000 12.44 0.00 44.06 3.59
208 209 1.361271 GGGCCGATTCGTGTCGATA 59.639 57.895 12.44 0.00 44.06 2.92
209 210 0.038526 GGGCCGATTCGTGTCGATAT 60.039 55.000 12.44 0.00 44.06 1.63
210 211 1.337821 GGCCGATTCGTGTCGATATC 58.662 55.000 12.44 0.00 44.06 1.63
211 212 0.975544 GCCGATTCGTGTCGATATCG 59.024 55.000 19.14 19.14 44.06 2.92
213 214 1.603293 CGATTCGTGTCGATATCGGG 58.397 55.000 24.12 11.67 44.06 5.14
214 215 1.337821 GATTCGTGTCGATATCGGGC 58.662 55.000 24.12 17.17 40.29 6.13
215 216 0.038526 ATTCGTGTCGATATCGGGCC 60.039 55.000 24.12 13.10 40.29 5.80
216 217 1.385756 TTCGTGTCGATATCGGGCCA 61.386 55.000 24.12 15.34 40.29 5.36
217 218 1.176619 TCGTGTCGATATCGGGCCAT 61.177 55.000 24.12 0.00 40.29 4.40
218 219 0.319555 CGTGTCGATATCGGGCCATT 60.320 55.000 24.12 0.00 40.29 3.16
219 220 1.872237 CGTGTCGATATCGGGCCATTT 60.872 52.381 24.12 0.00 40.29 2.32
220 221 2.218603 GTGTCGATATCGGGCCATTTT 58.781 47.619 24.12 0.00 40.29 1.82
221 222 2.616842 GTGTCGATATCGGGCCATTTTT 59.383 45.455 24.12 0.00 40.29 1.94
222 223 2.875933 TGTCGATATCGGGCCATTTTTC 59.124 45.455 24.12 0.00 40.29 2.29
223 224 2.096417 GTCGATATCGGGCCATTTTTCG 60.096 50.000 24.12 7.72 40.29 3.46
224 225 1.399727 CGATATCGGGCCATTTTTCGC 60.400 52.381 17.51 0.00 35.37 4.70
225 226 0.958822 ATATCGGGCCATTTTTCGCC 59.041 50.000 4.39 0.00 44.92 5.54
232 233 3.200294 GGCCATTTTTCGCCAAAATTG 57.800 42.857 0.00 4.92 41.57 2.32
243 244 1.155889 CCAAAATTGGGCCGAAAAGC 58.844 50.000 3.59 0.00 44.70 3.51
244 245 0.789601 CAAAATTGGGCCGAAAAGCG 59.210 50.000 3.59 0.00 40.47 4.68
254 255 3.975992 CGAAAAGCGGTCAGGAATG 57.024 52.632 0.00 0.00 36.03 2.67
255 256 0.447801 CGAAAAGCGGTCAGGAATGG 59.552 55.000 0.00 0.00 36.03 3.16
256 257 0.811281 GAAAAGCGGTCAGGAATGGG 59.189 55.000 0.00 0.00 0.00 4.00
257 258 0.112412 AAAAGCGGTCAGGAATGGGT 59.888 50.000 0.00 0.00 0.00 4.51
258 259 0.322546 AAAGCGGTCAGGAATGGGTC 60.323 55.000 0.00 0.00 0.00 4.46
259 260 2.511600 GCGGTCAGGAATGGGTCG 60.512 66.667 0.00 0.00 0.00 4.79
260 261 3.014085 GCGGTCAGGAATGGGTCGA 62.014 63.158 0.00 0.00 0.00 4.20
261 262 1.823295 CGGTCAGGAATGGGTCGAT 59.177 57.895 0.00 0.00 0.00 3.59
262 263 1.037493 CGGTCAGGAATGGGTCGATA 58.963 55.000 0.00 0.00 0.00 2.92
263 264 1.618837 CGGTCAGGAATGGGTCGATAT 59.381 52.381 0.00 0.00 0.00 1.63
264 265 2.352814 CGGTCAGGAATGGGTCGATATC 60.353 54.545 0.00 0.00 0.00 1.63
265 266 2.352814 GGTCAGGAATGGGTCGATATCG 60.353 54.545 19.14 19.14 41.45 2.92
266 267 1.893137 TCAGGAATGGGTCGATATCGG 59.107 52.381 24.12 6.74 40.29 4.18
267 268 0.608640 AGGAATGGGTCGATATCGGC 59.391 55.000 24.12 22.75 44.28 5.54
268 269 0.736325 GGAATGGGTCGATATCGGCG 60.736 60.000 24.12 0.00 46.26 6.46
272 273 3.271014 GGTCGATATCGGCGCCTA 58.729 61.111 26.68 15.56 46.26 3.93
273 274 1.136984 GGTCGATATCGGCGCCTAG 59.863 63.158 26.68 10.37 46.26 3.02
274 275 1.136984 GTCGATATCGGCGCCTAGG 59.863 63.158 26.68 9.50 40.29 3.02
275 276 2.044555 TCGATATCGGCGCCTAGGG 61.045 63.158 26.68 9.07 40.29 3.53
276 277 2.893398 GATATCGGCGCCTAGGGG 59.107 66.667 26.68 21.24 0.00 4.79
295 296 4.660938 GACCTTGGGGCAACGGCT 62.661 66.667 0.00 0.00 40.87 5.52
296 297 4.974721 ACCTTGGGGCAACGGCTG 62.975 66.667 0.00 0.00 40.87 4.85
298 299 4.659172 CTTGGGGCAACGGCTGGA 62.659 66.667 0.00 0.00 40.87 3.86
299 300 3.944250 CTTGGGGCAACGGCTGGAT 62.944 63.158 0.00 0.00 40.87 3.41
300 301 4.738998 TGGGGCAACGGCTGGATG 62.739 66.667 0.00 0.00 40.87 3.51
310 311 2.902343 GCTGGATGCCTAACCGCC 60.902 66.667 0.00 0.00 35.15 6.13
311 312 2.203209 CTGGATGCCTAACCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
312 313 3.774599 CTGGATGCCTAACCGCCCC 62.775 68.421 0.00 0.00 0.00 5.80
313 314 4.581093 GGATGCCTAACCGCCCCC 62.581 72.222 0.00 0.00 0.00 5.40
314 315 3.804329 GATGCCTAACCGCCCCCA 61.804 66.667 0.00 0.00 0.00 4.96
315 316 3.774599 GATGCCTAACCGCCCCCAG 62.775 68.421 0.00 0.00 0.00 4.45
317 318 4.176752 GCCTAACCGCCCCCAGAG 62.177 72.222 0.00 0.00 0.00 3.35
318 319 4.176752 CCTAACCGCCCCCAGAGC 62.177 72.222 0.00 0.00 0.00 4.09
319 320 4.176752 CTAACCGCCCCCAGAGCC 62.177 72.222 0.00 0.00 0.00 4.70
324 325 4.918201 CGCCCCCAGAGCCGATTC 62.918 72.222 0.00 0.00 0.00 2.52
325 326 3.483869 GCCCCCAGAGCCGATTCT 61.484 66.667 0.00 0.00 0.00 2.40
326 327 2.140792 GCCCCCAGAGCCGATTCTA 61.141 63.158 0.00 0.00 0.00 2.10
327 328 1.749033 CCCCCAGAGCCGATTCTAC 59.251 63.158 0.00 0.00 0.00 2.59
328 329 1.749033 CCCCAGAGCCGATTCTACC 59.251 63.158 0.00 0.00 0.00 3.18
329 330 1.364171 CCCAGAGCCGATTCTACCG 59.636 63.158 0.00 0.00 0.00 4.02
330 331 1.300233 CCAGAGCCGATTCTACCGC 60.300 63.158 0.00 0.00 0.00 5.68
331 332 1.300233 CAGAGCCGATTCTACCGCC 60.300 63.158 0.00 0.00 0.00 6.13
332 333 2.354773 GAGCCGATTCTACCGCCG 60.355 66.667 0.00 0.00 0.00 6.46
333 334 3.843117 GAGCCGATTCTACCGCCGG 62.843 68.421 0.00 0.00 44.34 6.13
335 336 3.912907 CCGATTCTACCGCCGGCT 61.913 66.667 26.68 9.55 35.29 5.52
336 337 2.354773 CGATTCTACCGCCGGCTC 60.355 66.667 26.68 12.39 0.00 4.70
337 338 2.354773 GATTCTACCGCCGGCTCG 60.355 66.667 26.68 17.01 0.00 5.03
338 339 4.587189 ATTCTACCGCCGGCTCGC 62.587 66.667 26.68 0.00 0.00 5.03
776 892 7.621428 ACTTCTGTTCACTAATGATCAATGG 57.379 36.000 0.00 0.00 34.79 3.16
813 1237 1.630244 GAGTGATGTGCGTGGCTGTC 61.630 60.000 0.00 0.00 0.00 3.51
864 1288 0.249238 CGCCCTACATCTCTGCACTC 60.249 60.000 0.00 0.00 0.00 3.51
883 1307 3.104766 GCATGTGCATGGACGAGG 58.895 61.111 13.03 5.68 41.59 4.63
907 1331 0.952497 CTGTGCTCACGTGAAGCCAT 60.952 55.000 26.34 0.00 0.00 4.40
908 1332 0.950555 TGTGCTCACGTGAAGCCATC 60.951 55.000 26.34 19.49 0.00 3.51
911 1407 0.874390 GCTCACGTGAAGCCATCAAA 59.126 50.000 20.49 0.00 40.50 2.69
922 1418 5.125097 GTGAAGCCATCAAAGAAGATCACAT 59.875 40.000 0.00 0.00 40.50 3.21
923 1419 5.124936 TGAAGCCATCAAAGAAGATCACATG 59.875 40.000 0.00 0.00 34.30 3.21
924 1420 3.380637 AGCCATCAAAGAAGATCACATGC 59.619 43.478 0.00 0.00 0.00 4.06
925 1421 3.791122 GCCATCAAAGAAGATCACATGCG 60.791 47.826 0.00 0.00 0.00 4.73
926 1422 3.376234 CCATCAAAGAAGATCACATGCGT 59.624 43.478 0.00 0.00 0.00 5.24
927 1423 4.142534 CCATCAAAGAAGATCACATGCGTT 60.143 41.667 0.00 0.00 0.00 4.84
928 1424 5.065090 CCATCAAAGAAGATCACATGCGTTA 59.935 40.000 0.00 0.00 0.00 3.18
929 1425 6.238566 CCATCAAAGAAGATCACATGCGTTAT 60.239 38.462 0.00 0.00 0.00 1.89
930 1426 6.110543 TCAAAGAAGATCACATGCGTTATG 57.889 37.500 0.00 1.05 42.68 1.90
939 1435 2.737467 CATGCGTTATGTGTACCTGC 57.263 50.000 0.00 0.00 31.92 4.85
940 1436 1.330521 CATGCGTTATGTGTACCTGCC 59.669 52.381 0.00 0.00 31.92 4.85
941 1437 0.391927 TGCGTTATGTGTACCTGCCC 60.392 55.000 0.00 0.00 0.00 5.36
942 1438 0.107848 GCGTTATGTGTACCTGCCCT 60.108 55.000 0.00 0.00 0.00 5.19
943 1439 1.935933 CGTTATGTGTACCTGCCCTC 58.064 55.000 0.00 0.00 0.00 4.30
944 1440 1.472728 CGTTATGTGTACCTGCCCTCC 60.473 57.143 0.00 0.00 0.00 4.30
945 1441 1.838077 GTTATGTGTACCTGCCCTCCT 59.162 52.381 0.00 0.00 0.00 3.69
956 1452 2.590821 CTGCCCTCCTGAATAATTGGG 58.409 52.381 0.00 0.00 37.76 4.12
1038 1702 1.077501 GTGCTTGCCATGCCTCCTA 60.078 57.895 0.00 0.00 0.00 2.94
1047 1711 1.211457 CCATGCCTCCTAGTCTTTGCT 59.789 52.381 0.00 0.00 0.00 3.91
1062 1726 3.395941 TCTTTGCTCCCTTCTTCTTCCTT 59.604 43.478 0.00 0.00 0.00 3.36
1403 2074 4.129737 CGACGACCCTGCCGACAT 62.130 66.667 0.00 0.00 0.00 3.06
1409 2080 1.078426 ACCCTGCCGACATGTAAGC 60.078 57.895 11.69 11.69 0.00 3.09
1411 2082 0.464373 CCCTGCCGACATGTAAGCAT 60.464 55.000 19.40 0.00 34.16 3.79
1412 2083 0.940126 CCTGCCGACATGTAAGCATC 59.060 55.000 19.40 0.00 34.16 3.91
1414 2085 0.809636 TGCCGACATGTAAGCATCGG 60.810 55.000 16.19 15.63 42.16 4.18
1415 2086 0.529773 GCCGACATGTAAGCATCGGA 60.530 55.000 21.61 0.00 41.96 4.55
1416 2087 1.934589 CCGACATGTAAGCATCGGAA 58.065 50.000 14.42 0.00 41.96 4.30
1417 2088 2.483876 CCGACATGTAAGCATCGGAAT 58.516 47.619 14.42 0.00 41.96 3.01
1419 2090 3.123050 CGACATGTAAGCATCGGAATCA 58.877 45.455 0.00 0.00 31.99 2.57
1420 2091 3.555547 CGACATGTAAGCATCGGAATCAA 59.444 43.478 0.00 0.00 31.99 2.57
1422 2093 5.613360 CGACATGTAAGCATCGGAATCAATC 60.613 44.000 0.00 0.00 31.99 2.67
1423 2094 5.125356 ACATGTAAGCATCGGAATCAATCA 58.875 37.500 0.00 0.00 31.99 2.57
1425 2096 4.769688 TGTAAGCATCGGAATCAATCACT 58.230 39.130 0.00 0.00 0.00 3.41
1426 2097 5.912892 TGTAAGCATCGGAATCAATCACTA 58.087 37.500 0.00 0.00 0.00 2.74
1427 2098 6.524734 TGTAAGCATCGGAATCAATCACTAT 58.475 36.000 0.00 0.00 0.00 2.12
1428 2099 7.666623 TGTAAGCATCGGAATCAATCACTATA 58.333 34.615 0.00 0.00 0.00 1.31
1429 2100 7.814587 TGTAAGCATCGGAATCAATCACTATAG 59.185 37.037 0.00 0.00 0.00 1.31
1430 2101 6.352016 AGCATCGGAATCAATCACTATAGT 57.648 37.500 0.00 0.00 0.00 2.12
1431 2102 7.468141 AGCATCGGAATCAATCACTATAGTA 57.532 36.000 4.74 0.00 0.00 1.82
1432 2103 7.542890 AGCATCGGAATCAATCACTATAGTAG 58.457 38.462 4.74 0.69 0.00 2.57
1433 2104 7.177568 AGCATCGGAATCAATCACTATAGTAGT 59.822 37.037 4.74 0.00 40.28 2.73
1434 2105 8.459635 GCATCGGAATCAATCACTATAGTAGTA 58.540 37.037 4.74 0.00 37.23 1.82
1465 2136 0.249784 CCTAGCTCACGCATGCTGAT 60.250 55.000 17.13 7.20 40.08 2.90
1467 2138 1.260825 CTAGCTCACGCATGCTGATTG 59.739 52.381 17.13 7.57 40.08 2.67
1468 2139 1.585521 GCTCACGCATGCTGATTGC 60.586 57.895 17.13 14.01 37.98 3.56
1469 2140 1.989966 GCTCACGCATGCTGATTGCT 61.990 55.000 17.13 0.00 37.96 3.91
1470 2141 0.027716 CTCACGCATGCTGATTGCTC 59.972 55.000 17.13 0.00 43.37 4.26
1497 2181 0.398381 GGAGGAGCAGGGAGATCTGT 60.398 60.000 0.00 0.00 37.12 3.41
1506 2190 3.581101 CAGGGAGATCTGTATGGGAAGA 58.419 50.000 0.00 0.00 0.00 2.87
1529 2213 3.119096 GGAGGCGTTGGAGCGAAC 61.119 66.667 0.00 0.00 38.18 3.95
1668 2352 4.121669 GAGCACGCGAGCAGGAGA 62.122 66.667 29.45 0.00 36.85 3.71
1698 2382 4.530857 CCGGCCATCCTCGTGTCC 62.531 72.222 2.24 0.00 0.00 4.02
2243 4129 0.245539 GTTGTCGGTGAAGATCCGGA 59.754 55.000 6.61 6.61 46.82 5.14
2261 4147 2.124736 GCAGCGGGGATGCTACAA 60.125 61.111 0.00 0.00 45.23 2.41
2270 4156 3.305676 CGGGGATGCTACAAGTCTATCAG 60.306 52.174 0.00 0.00 0.00 2.90
2370 4256 4.465512 CGCGCCAACCAGACATGC 62.466 66.667 0.00 0.00 0.00 4.06
2371 4257 3.364441 GCGCCAACCAGACATGCA 61.364 61.111 0.00 0.00 0.00 3.96
2374 4260 1.588824 CGCCAACCAGACATGCATGT 61.589 55.000 31.82 31.82 45.16 3.21
2375 4261 0.108992 GCCAACCAGACATGCATGTG 60.109 55.000 35.92 23.33 41.95 3.21
2376 4262 1.250328 CCAACCAGACATGCATGTGT 58.750 50.000 35.92 29.34 41.95 3.72
2388 4274 2.174334 CATGTGTGCTACCCACTGC 58.826 57.895 0.00 0.00 44.92 4.40
2389 4275 1.002134 ATGTGTGCTACCCACTGCC 60.002 57.895 0.00 0.00 44.92 4.85
2390 4276 2.742372 GTGTGCTACCCACTGCCG 60.742 66.667 0.00 0.00 44.92 5.69
2391 4277 4.015406 TGTGCTACCCACTGCCGG 62.015 66.667 0.00 0.00 44.92 6.13
2462 4348 3.511146 CCTTTATCTTCCAAAAGCCAGCA 59.489 43.478 0.00 0.00 32.48 4.41
2464 4350 4.989279 TTATCTTCCAAAAGCCAGCATC 57.011 40.909 0.00 0.00 32.18 3.91
2480 4366 5.220777 GCCAGCATCATCATCAAATTTTTGG 60.221 40.000 3.38 0.00 38.66 3.28
2490 4376 6.523840 TCATCAAATTTTTGGGGTTTCTCTG 58.476 36.000 3.38 0.00 38.66 3.35
2498 4384 1.909302 TGGGGTTTCTCTGGATCTCAC 59.091 52.381 0.00 0.00 0.00 3.51
2595 4488 6.419791 ACATTTTTATATCCCTCACCGTTCA 58.580 36.000 0.00 0.00 0.00 3.18
2619 4512 1.195448 GGTCTGTGATTCGTGCAACAG 59.805 52.381 7.51 7.51 35.74 3.16
2620 4513 1.195448 GTCTGTGATTCGTGCAACAGG 59.805 52.381 12.72 0.00 35.74 4.00
2621 4514 1.069978 TCTGTGATTCGTGCAACAGGA 59.930 47.619 12.72 0.00 35.74 3.86
2622 4515 1.462283 CTGTGATTCGTGCAACAGGAG 59.538 52.381 6.13 0.00 35.74 3.69
2623 4516 0.798776 GTGATTCGTGCAACAGGAGG 59.201 55.000 0.00 0.00 35.74 4.30
2624 4517 0.955428 TGATTCGTGCAACAGGAGGC 60.955 55.000 0.00 0.00 35.74 4.70
2625 4518 1.648467 GATTCGTGCAACAGGAGGCC 61.648 60.000 0.00 0.00 35.74 5.19
2683 4576 2.969628 AAGACCGATCTACCAAGCTG 57.030 50.000 0.00 0.00 33.57 4.24
2706 4600 2.188469 GCGATTAGGGTTCCGCCA 59.812 61.111 0.00 0.00 41.59 5.69
2734 4629 1.443729 CCCCTTCACCCCCTTCCTTT 61.444 60.000 0.00 0.00 0.00 3.11
2816 4711 1.742768 GGATCTCGGCACTCGGATT 59.257 57.895 0.00 0.00 39.77 3.01
2857 4752 1.219124 GAGACTCGCATTGGAGGCA 59.781 57.895 9.71 0.00 44.91 4.75
2877 4772 3.708544 CGGTTCCTTGGGGCGGTA 61.709 66.667 0.00 0.00 0.00 4.02
2938 4833 4.479993 GCAGGAGACGCTGGCCAT 62.480 66.667 5.51 0.00 0.00 4.40
2940 4835 1.522092 CAGGAGACGCTGGCCATTA 59.478 57.895 5.51 0.00 0.00 1.90
2969 4864 2.758327 ACGGGCCATGAGTCGCTA 60.758 61.111 4.39 0.00 0.00 4.26
2975 4870 0.175760 GCCATGAGTCGCTAGTGGAA 59.824 55.000 2.90 0.00 31.59 3.53
2983 4878 2.797278 CGCTAGTGGAATCCGGCCT 61.797 63.158 0.00 0.00 0.00 5.19
3044 4953 0.833409 TGTCCTGCTGCCTCTCTCAA 60.833 55.000 0.00 0.00 0.00 3.02
3094 5004 0.547712 ATGGTGGTGAGCCCTAGTGT 60.548 55.000 0.00 0.00 0.00 3.55
3209 5120 1.002990 GTCCCAAACTACCCACCCG 60.003 63.158 0.00 0.00 0.00 5.28
3210 5121 1.152074 TCCCAAACTACCCACCCGA 60.152 57.895 0.00 0.00 0.00 5.14
3211 5122 0.548197 TCCCAAACTACCCACCCGAT 60.548 55.000 0.00 0.00 0.00 4.18
3290 5202 1.524863 CGTCGTGACCTTCCTGGAGT 61.525 60.000 0.00 0.00 39.71 3.85
3295 5207 1.416401 GTGACCTTCCTGGAGTTGTCA 59.584 52.381 16.31 16.31 39.71 3.58
3299 5211 2.915604 ACCTTCCTGGAGTTGTCATCAT 59.084 45.455 0.00 0.00 39.71 2.45
3365 5278 2.845784 TGGGACAAGTGGCAGCAT 59.154 55.556 0.00 0.00 31.92 3.79
3469 5382 0.251634 TGCTGGGCGTGTAATGATGA 59.748 50.000 0.00 0.00 0.00 2.92
3471 5384 1.331756 GCTGGGCGTGTAATGATGAAG 59.668 52.381 0.00 0.00 0.00 3.02
3473 5386 0.663153 GGGCGTGTAATGATGAAGGC 59.337 55.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.687757 TAGGCGCTCCACCAGATTCT 60.688 55.000 7.64 0.00 33.74 2.40
2 3 0.394565 ATAGGCGCTCCACCAGATTC 59.605 55.000 7.64 0.00 33.74 2.52
3 4 0.107456 CATAGGCGCTCCACCAGATT 59.893 55.000 7.64 0.00 33.74 2.40
4 5 1.750930 CATAGGCGCTCCACCAGAT 59.249 57.895 7.64 0.00 33.74 2.90
5 6 2.434843 CCATAGGCGCTCCACCAGA 61.435 63.158 7.64 0.00 33.74 3.86
7 8 2.364973 TCCATAGGCGCTCCACCA 60.365 61.111 7.64 0.00 33.74 4.17
8 9 2.423446 CTCCATAGGCGCTCCACC 59.577 66.667 7.64 0.00 33.74 4.61
9 10 1.686325 TTCCTCCATAGGCGCTCCAC 61.686 60.000 7.64 0.00 43.31 4.02
10 11 1.382557 TTCCTCCATAGGCGCTCCA 60.383 57.895 7.64 0.00 43.31 3.86
11 12 1.069935 GTTCCTCCATAGGCGCTCC 59.930 63.158 7.64 0.00 43.31 4.70
12 13 0.178068 TTGTTCCTCCATAGGCGCTC 59.822 55.000 7.64 0.00 43.31 5.03
13 14 0.179000 CTTGTTCCTCCATAGGCGCT 59.821 55.000 7.64 0.00 43.31 5.92
14 15 0.815615 CCTTGTTCCTCCATAGGCGC 60.816 60.000 0.00 0.00 43.31 6.53
15 16 0.179045 CCCTTGTTCCTCCATAGGCG 60.179 60.000 0.00 0.00 43.31 5.52
16 17 0.466372 GCCCTTGTTCCTCCATAGGC 60.466 60.000 0.00 0.00 43.31 3.93
17 18 0.179045 CGCCCTTGTTCCTCCATAGG 60.179 60.000 0.00 0.00 45.21 2.57
18 19 0.830648 TCGCCCTTGTTCCTCCATAG 59.169 55.000 0.00 0.00 0.00 2.23
19 20 0.539986 GTCGCCCTTGTTCCTCCATA 59.460 55.000 0.00 0.00 0.00 2.74
20 21 1.299976 GTCGCCCTTGTTCCTCCAT 59.700 57.895 0.00 0.00 0.00 3.41
21 22 2.144078 TGTCGCCCTTGTTCCTCCA 61.144 57.895 0.00 0.00 0.00 3.86
22 23 1.671379 GTGTCGCCCTTGTTCCTCC 60.671 63.158 0.00 0.00 0.00 4.30
23 24 1.671379 GGTGTCGCCCTTGTTCCTC 60.671 63.158 0.00 0.00 0.00 3.71
24 25 0.834687 TAGGTGTCGCCCTTGTTCCT 60.835 55.000 0.00 0.00 38.26 3.36
25 26 0.391263 CTAGGTGTCGCCCTTGTTCC 60.391 60.000 0.00 0.00 38.26 3.62
26 27 1.019805 GCTAGGTGTCGCCCTTGTTC 61.020 60.000 0.00 0.00 38.26 3.18
27 28 1.003718 GCTAGGTGTCGCCCTTGTT 60.004 57.895 0.00 0.00 38.26 2.83
28 29 1.889530 GAGCTAGGTGTCGCCCTTGT 61.890 60.000 0.00 0.00 38.26 3.16
29 30 1.153549 GAGCTAGGTGTCGCCCTTG 60.154 63.158 0.00 0.00 38.26 3.61
30 31 2.711922 CGAGCTAGGTGTCGCCCTT 61.712 63.158 0.00 0.00 38.26 3.95
31 32 3.141488 CGAGCTAGGTGTCGCCCT 61.141 66.667 0.00 0.00 38.26 5.19
32 33 3.138798 TCGAGCTAGGTGTCGCCC 61.139 66.667 0.00 0.00 38.26 6.13
33 34 2.102553 GTCGAGCTAGGTGTCGCC 59.897 66.667 0.00 0.00 36.11 5.54
34 35 2.277373 CGTCGAGCTAGGTGTCGC 60.277 66.667 0.00 0.00 36.11 5.19
35 36 1.226046 CACGTCGAGCTAGGTGTCG 60.226 63.158 0.00 3.87 37.54 4.35
36 37 0.454620 CACACGTCGAGCTAGGTGTC 60.455 60.000 11.13 0.00 44.30 3.67
37 38 0.887836 TCACACGTCGAGCTAGGTGT 60.888 55.000 8.76 8.76 46.35 4.16
38 39 0.452184 ATCACACGTCGAGCTAGGTG 59.548 55.000 0.00 7.59 40.28 4.00
39 40 0.452184 CATCACACGTCGAGCTAGGT 59.548 55.000 0.00 0.00 0.00 3.08
40 41 0.733150 TCATCACACGTCGAGCTAGG 59.267 55.000 0.00 0.00 0.00 3.02
41 42 2.544480 TTCATCACACGTCGAGCTAG 57.456 50.000 0.00 0.00 0.00 3.42
42 43 3.503827 ATTTCATCACACGTCGAGCTA 57.496 42.857 0.00 0.00 0.00 3.32
43 44 2.370281 ATTTCATCACACGTCGAGCT 57.630 45.000 0.00 0.00 0.00 4.09
44 45 3.796717 TCATATTTCATCACACGTCGAGC 59.203 43.478 0.00 0.00 0.00 5.03
45 46 5.037385 ACTCATATTTCATCACACGTCGAG 58.963 41.667 0.00 0.00 0.00 4.04
46 47 4.993905 ACTCATATTTCATCACACGTCGA 58.006 39.130 0.00 0.00 0.00 4.20
47 48 5.702622 AACTCATATTTCATCACACGTCG 57.297 39.130 0.00 0.00 0.00 5.12
48 49 9.988350 ATAAAAACTCATATTTCATCACACGTC 57.012 29.630 0.00 0.00 0.00 4.34
89 90 9.762933 ACAACAGCAAATAGTTCAATACAAATT 57.237 25.926 0.00 0.00 0.00 1.82
91 92 9.672086 GTACAACAGCAAATAGTTCAATACAAA 57.328 29.630 0.00 0.00 0.00 2.83
92 93 9.062524 AGTACAACAGCAAATAGTTCAATACAA 57.937 29.630 0.00 0.00 0.00 2.41
93 94 8.615878 AGTACAACAGCAAATAGTTCAATACA 57.384 30.769 0.00 0.00 0.00 2.29
97 98 9.891828 CAAATAGTACAACAGCAAATAGTTCAA 57.108 29.630 0.00 0.00 0.00 2.69
98 99 9.062524 ACAAATAGTACAACAGCAAATAGTTCA 57.937 29.630 0.00 0.00 0.00 3.18
99 100 9.893305 AACAAATAGTACAACAGCAAATAGTTC 57.107 29.630 0.00 0.00 0.00 3.01
100 101 9.677567 CAACAAATAGTACAACAGCAAATAGTT 57.322 29.630 0.00 0.00 0.00 2.24
101 102 9.062524 TCAACAAATAGTACAACAGCAAATAGT 57.937 29.630 0.00 0.00 0.00 2.12
102 103 9.891828 TTCAACAAATAGTACAACAGCAAATAG 57.108 29.630 0.00 0.00 0.00 1.73
103 104 9.672086 GTTCAACAAATAGTACAACAGCAAATA 57.328 29.630 0.00 0.00 0.00 1.40
104 105 8.413229 AGTTCAACAAATAGTACAACAGCAAAT 58.587 29.630 0.00 0.00 0.00 2.32
105 106 7.767261 AGTTCAACAAATAGTACAACAGCAAA 58.233 30.769 0.00 0.00 0.00 3.68
106 107 7.328277 AGTTCAACAAATAGTACAACAGCAA 57.672 32.000 0.00 0.00 0.00 3.91
107 108 6.935741 AGTTCAACAAATAGTACAACAGCA 57.064 33.333 0.00 0.00 0.00 4.41
108 109 9.893305 AAATAGTTCAACAAATAGTACAACAGC 57.107 29.630 0.00 0.00 0.00 4.40
134 135 9.708092 TCATCACAGCAAATCAATAAAAATCAA 57.292 25.926 0.00 0.00 0.00 2.57
135 136 9.708092 TTCATCACAGCAAATCAATAAAAATCA 57.292 25.926 0.00 0.00 0.00 2.57
141 142 9.738832 CACATATTCATCACAGCAAATCAATAA 57.261 29.630 0.00 0.00 0.00 1.40
142 143 9.122779 TCACATATTCATCACAGCAAATCAATA 57.877 29.630 0.00 0.00 0.00 1.90
143 144 7.919091 GTCACATATTCATCACAGCAAATCAAT 59.081 33.333 0.00 0.00 0.00 2.57
144 145 7.094291 TGTCACATATTCATCACAGCAAATCAA 60.094 33.333 0.00 0.00 0.00 2.57
145 146 6.374894 TGTCACATATTCATCACAGCAAATCA 59.625 34.615 0.00 0.00 0.00 2.57
146 147 6.690098 GTGTCACATATTCATCACAGCAAATC 59.310 38.462 0.00 0.00 0.00 2.17
147 148 6.151480 TGTGTCACATATTCATCACAGCAAAT 59.849 34.615 0.18 0.00 33.07 2.32
148 149 5.472820 TGTGTCACATATTCATCACAGCAAA 59.527 36.000 0.18 0.00 33.07 3.68
149 150 5.002516 TGTGTCACATATTCATCACAGCAA 58.997 37.500 0.18 0.00 33.07 3.91
150 151 4.577875 TGTGTCACATATTCATCACAGCA 58.422 39.130 0.18 0.00 33.07 4.41
151 152 5.550232 TTGTGTCACATATTCATCACAGC 57.450 39.130 6.48 0.00 37.18 4.40
152 153 7.326789 GGTTTTTGTGTCACATATTCATCACAG 59.673 37.037 6.48 0.00 37.18 3.66
153 154 7.144661 GGTTTTTGTGTCACATATTCATCACA 58.855 34.615 6.48 0.00 34.69 3.58
154 155 7.114811 GTGGTTTTTGTGTCACATATTCATCAC 59.885 37.037 6.48 6.57 0.00 3.06
155 156 7.144661 GTGGTTTTTGTGTCACATATTCATCA 58.855 34.615 6.48 0.00 0.00 3.07
156 157 6.305399 CGTGGTTTTTGTGTCACATATTCATC 59.695 38.462 6.48 0.00 0.00 2.92
157 158 6.148948 CGTGGTTTTTGTGTCACATATTCAT 58.851 36.000 6.48 0.00 0.00 2.57
158 159 5.515184 CGTGGTTTTTGTGTCACATATTCA 58.485 37.500 6.48 0.00 0.00 2.57
159 160 4.381566 GCGTGGTTTTTGTGTCACATATTC 59.618 41.667 6.48 0.00 0.00 1.75
160 161 4.295051 GCGTGGTTTTTGTGTCACATATT 58.705 39.130 6.48 0.00 0.00 1.28
161 162 3.305064 GGCGTGGTTTTTGTGTCACATAT 60.305 43.478 6.48 0.00 0.00 1.78
162 163 2.033550 GGCGTGGTTTTTGTGTCACATA 59.966 45.455 6.48 0.00 0.00 2.29
163 164 1.202359 GGCGTGGTTTTTGTGTCACAT 60.202 47.619 6.48 0.00 0.00 3.21
164 165 0.171455 GGCGTGGTTTTTGTGTCACA 59.829 50.000 0.18 0.18 0.00 3.58
165 166 0.863957 CGGCGTGGTTTTTGTGTCAC 60.864 55.000 0.00 0.00 0.00 3.67
166 167 1.025113 TCGGCGTGGTTTTTGTGTCA 61.025 50.000 6.85 0.00 0.00 3.58
167 168 0.099082 TTCGGCGTGGTTTTTGTGTC 59.901 50.000 6.85 0.00 0.00 3.67
168 169 0.741915 ATTCGGCGTGGTTTTTGTGT 59.258 45.000 6.85 0.00 0.00 3.72
169 170 2.690173 TATTCGGCGTGGTTTTTGTG 57.310 45.000 6.85 0.00 0.00 3.33
170 171 2.094957 CCATATTCGGCGTGGTTTTTGT 60.095 45.455 6.85 0.00 0.00 2.83
171 172 2.525055 CCATATTCGGCGTGGTTTTTG 58.475 47.619 6.85 0.00 0.00 2.44
172 173 1.474879 CCCATATTCGGCGTGGTTTTT 59.525 47.619 6.85 0.00 0.00 1.94
173 174 1.099689 CCCATATTCGGCGTGGTTTT 58.900 50.000 6.85 0.00 0.00 2.43
174 175 1.381165 GCCCATATTCGGCGTGGTTT 61.381 55.000 6.85 0.00 36.47 3.27
175 176 1.822186 GCCCATATTCGGCGTGGTT 60.822 57.895 6.85 0.00 36.47 3.67
176 177 2.203153 GCCCATATTCGGCGTGGT 60.203 61.111 6.85 0.00 36.47 4.16
181 182 1.635663 CGAATCGGCCCATATTCGGC 61.636 60.000 24.44 2.38 46.63 5.54
182 183 2.456000 CGAATCGGCCCATATTCGG 58.544 57.895 24.44 12.62 46.63 4.30
184 185 1.798813 GACACGAATCGGCCCATATTC 59.201 52.381 7.80 3.55 0.00 1.75
185 186 1.872237 CGACACGAATCGGCCCATATT 60.872 52.381 7.80 0.00 38.47 1.28
186 187 0.319555 CGACACGAATCGGCCCATAT 60.320 55.000 7.80 0.00 38.47 1.78
187 188 1.066752 CGACACGAATCGGCCCATA 59.933 57.895 7.80 0.00 38.47 2.74
188 189 2.028125 ATCGACACGAATCGGCCCAT 62.028 55.000 7.80 0.00 42.50 4.00
189 190 1.385756 TATCGACACGAATCGGCCCA 61.386 55.000 7.80 0.00 42.50 5.36
190 191 0.038526 ATATCGACACGAATCGGCCC 60.039 55.000 7.80 0.00 42.50 5.80
191 192 1.337821 GATATCGACACGAATCGGCC 58.662 55.000 7.80 0.00 42.50 6.13
192 193 0.975544 CGATATCGACACGAATCGGC 59.024 55.000 20.50 0.00 42.50 5.54
194 195 1.603293 CCCGATATCGACACGAATCG 58.397 55.000 26.32 19.99 41.45 3.34
195 196 1.337821 GCCCGATATCGACACGAATC 58.662 55.000 26.32 2.55 39.99 2.52
196 197 0.038526 GGCCCGATATCGACACGAAT 60.039 55.000 26.32 0.00 39.99 3.34
197 198 1.361271 GGCCCGATATCGACACGAA 59.639 57.895 26.32 0.00 39.99 3.85
198 199 1.176619 ATGGCCCGATATCGACACGA 61.177 55.000 26.32 12.08 43.02 4.35
199 200 0.319555 AATGGCCCGATATCGACACG 60.320 55.000 26.32 9.28 43.02 4.49
200 201 1.878953 AAATGGCCCGATATCGACAC 58.121 50.000 26.32 14.86 43.02 3.67
201 202 2.631160 AAAATGGCCCGATATCGACA 57.369 45.000 26.32 20.18 43.02 4.35
202 203 2.096417 CGAAAAATGGCCCGATATCGAC 60.096 50.000 26.32 16.76 43.02 4.20
203 204 2.139917 CGAAAAATGGCCCGATATCGA 58.860 47.619 26.32 6.70 43.02 3.59
204 205 1.399727 GCGAAAAATGGCCCGATATCG 60.400 52.381 18.31 18.31 39.44 2.92
205 206 1.068541 GGCGAAAAATGGCCCGATATC 60.069 52.381 0.00 0.00 43.64 1.63
206 207 0.958822 GGCGAAAAATGGCCCGATAT 59.041 50.000 0.00 0.00 43.64 1.63
207 208 2.410466 GGCGAAAAATGGCCCGATA 58.590 52.632 0.00 0.00 43.64 2.92
208 209 3.206374 GGCGAAAAATGGCCCGAT 58.794 55.556 0.00 0.00 43.64 4.18
209 210 5.680210 AATTTTGGCGAAAAATGGCCCGA 62.680 43.478 10.78 0.00 45.73 5.14
210 211 3.447204 AATTTTGGCGAAAAATGGCCCG 61.447 45.455 10.78 0.00 45.73 6.13
211 212 2.095314 CAATTTTGGCGAAAAATGGCCC 60.095 45.455 10.78 0.00 45.73 5.80
212 213 2.095314 CCAATTTTGGCGAAAAATGGCC 60.095 45.455 22.89 0.00 45.73 5.36
213 214 2.095314 CCCAATTTTGGCGAAAAATGGC 60.095 45.455 26.87 0.00 45.36 4.40
214 215 2.095314 GCCCAATTTTGGCGAAAAATGG 60.095 45.455 25.86 25.86 45.73 3.16
215 216 3.200294 GCCCAATTTTGGCGAAAAATG 57.800 42.857 10.78 12.20 45.73 2.32
224 225 2.529442 CGCTTTTCGGCCCAATTTTGG 61.529 52.381 0.00 2.17 40.31 3.28
225 226 0.789601 CGCTTTTCGGCCCAATTTTG 59.210 50.000 0.00 0.00 33.78 2.44
226 227 3.209266 CGCTTTTCGGCCCAATTTT 57.791 47.368 0.00 0.00 33.78 1.82
227 228 4.985845 CGCTTTTCGGCCCAATTT 57.014 50.000 0.00 0.00 33.78 1.82
236 237 0.447801 CCATTCCTGACCGCTTTTCG 59.552 55.000 0.00 0.00 38.08 3.46
237 238 0.811281 CCCATTCCTGACCGCTTTTC 59.189 55.000 0.00 0.00 0.00 2.29
238 239 0.112412 ACCCATTCCTGACCGCTTTT 59.888 50.000 0.00 0.00 0.00 2.27
239 240 0.322546 GACCCATTCCTGACCGCTTT 60.323 55.000 0.00 0.00 0.00 3.51
240 241 1.299976 GACCCATTCCTGACCGCTT 59.700 57.895 0.00 0.00 0.00 4.68
241 242 2.990479 GACCCATTCCTGACCGCT 59.010 61.111 0.00 0.00 0.00 5.52
242 243 2.311688 ATCGACCCATTCCTGACCGC 62.312 60.000 0.00 0.00 0.00 5.68
243 244 1.037493 TATCGACCCATTCCTGACCG 58.963 55.000 0.00 0.00 0.00 4.79
244 245 2.352814 CGATATCGACCCATTCCTGACC 60.353 54.545 20.50 0.00 43.02 4.02
245 246 2.352814 CCGATATCGACCCATTCCTGAC 60.353 54.545 26.32 0.00 43.02 3.51
246 247 1.893137 CCGATATCGACCCATTCCTGA 59.107 52.381 26.32 0.00 43.02 3.86
247 248 1.673033 GCCGATATCGACCCATTCCTG 60.673 57.143 26.32 6.51 43.02 3.86
248 249 0.608640 GCCGATATCGACCCATTCCT 59.391 55.000 26.32 0.00 43.02 3.36
249 250 0.736325 CGCCGATATCGACCCATTCC 60.736 60.000 26.32 3.44 43.02 3.01
250 251 1.352156 GCGCCGATATCGACCCATTC 61.352 60.000 26.32 4.52 43.02 2.67
251 252 1.374252 GCGCCGATATCGACCCATT 60.374 57.895 26.32 0.00 43.02 3.16
252 253 2.261671 GCGCCGATATCGACCCAT 59.738 61.111 26.32 0.00 43.02 4.00
253 254 3.986006 GGCGCCGATATCGACCCA 61.986 66.667 26.32 0.00 43.02 4.51
254 255 2.267681 CTAGGCGCCGATATCGACCC 62.268 65.000 26.32 20.30 43.02 4.46
255 256 1.136984 CTAGGCGCCGATATCGACC 59.863 63.158 26.32 21.75 43.02 4.79
256 257 1.136984 CCTAGGCGCCGATATCGAC 59.863 63.158 26.32 14.35 43.02 4.20
257 258 2.044555 CCCTAGGCGCCGATATCGA 61.045 63.158 26.32 4.22 43.02 3.59
258 259 2.490217 CCCTAGGCGCCGATATCG 59.510 66.667 23.20 18.31 39.44 2.92
259 260 2.893398 CCCCTAGGCGCCGATATC 59.107 66.667 23.20 0.00 0.00 1.63
269 270 3.480133 CCCAAGGTCGCCCCTAGG 61.480 72.222 0.06 0.06 45.47 3.02
270 271 3.480133 CCCCAAGGTCGCCCCTAG 61.480 72.222 0.00 0.00 45.47 3.02
278 279 4.660938 AGCCGTTGCCCCAAGGTC 62.661 66.667 0.00 0.00 38.69 3.85
279 280 4.974721 CAGCCGTTGCCCCAAGGT 62.975 66.667 0.00 0.00 38.69 3.50
281 282 3.944250 ATCCAGCCGTTGCCCCAAG 62.944 63.158 0.00 0.00 38.69 3.61
282 283 3.978193 ATCCAGCCGTTGCCCCAA 61.978 61.111 0.00 0.00 38.69 4.12
283 284 4.738998 CATCCAGCCGTTGCCCCA 62.739 66.667 0.00 0.00 38.69 4.96
293 294 2.902343 GGCGGTTAGGCATCCAGC 60.902 66.667 0.00 0.00 45.92 4.85
300 301 4.176752 CTCTGGGGGCGGTTAGGC 62.177 72.222 0.00 0.00 45.91 3.93
301 302 4.176752 GCTCTGGGGGCGGTTAGG 62.177 72.222 0.00 0.00 0.00 2.69
302 303 4.176752 GGCTCTGGGGGCGGTTAG 62.177 72.222 0.00 0.00 0.00 2.34
308 309 2.140792 TAGAATCGGCTCTGGGGGC 61.141 63.158 0.00 0.00 0.00 5.80
309 310 1.749033 GTAGAATCGGCTCTGGGGG 59.251 63.158 0.00 0.00 0.00 5.40
310 311 1.749033 GGTAGAATCGGCTCTGGGG 59.251 63.158 0.00 0.00 0.00 4.96
311 312 1.364171 CGGTAGAATCGGCTCTGGG 59.636 63.158 0.00 0.00 0.00 4.45
312 313 1.300233 GCGGTAGAATCGGCTCTGG 60.300 63.158 0.00 0.00 0.00 3.86
313 314 4.327885 GCGGTAGAATCGGCTCTG 57.672 61.111 0.00 0.00 0.00 3.35
318 319 3.843117 GAGCCGGCGGTAGAATCGG 62.843 68.421 28.82 0.00 44.70 4.18
319 320 2.354773 GAGCCGGCGGTAGAATCG 60.355 66.667 28.82 0.00 0.00 3.34
320 321 2.354773 CGAGCCGGCGGTAGAATC 60.355 66.667 28.82 15.99 0.00 2.52
321 322 4.587189 GCGAGCCGGCGGTAGAAT 62.587 66.667 28.82 8.64 0.00 2.40
733 734 9.084164 ACAGAAGTAGTATTTAGTTGCGTTATG 57.916 33.333 0.00 0.00 0.00 1.90
766 882 4.081862 CACAAAGCCAGAACCATTGATCAT 60.082 41.667 0.00 0.00 0.00 2.45
769 885 2.028748 GCACAAAGCCAGAACCATTGAT 60.029 45.455 0.00 0.00 37.23 2.57
770 886 1.340889 GCACAAAGCCAGAACCATTGA 59.659 47.619 0.00 0.00 37.23 2.57
771 887 1.068895 TGCACAAAGCCAGAACCATTG 59.931 47.619 0.00 0.00 44.83 2.82
772 888 1.412079 TGCACAAAGCCAGAACCATT 58.588 45.000 0.00 0.00 44.83 3.16
776 892 3.077359 ACTCTATGCACAAAGCCAGAAC 58.923 45.455 0.00 0.00 44.83 3.01
813 1237 2.355197 TCAAACACACACAGACACAGG 58.645 47.619 0.00 0.00 0.00 4.00
868 1292 1.153568 CGTCCTCGTCCATGCACAT 60.154 57.895 0.00 0.00 0.00 3.21
871 1295 4.451150 GCCGTCCTCGTCCATGCA 62.451 66.667 0.00 0.00 35.01 3.96
872 1296 4.148825 AGCCGTCCTCGTCCATGC 62.149 66.667 0.00 0.00 35.01 4.06
874 1298 2.680352 ACAGCCGTCCTCGTCCAT 60.680 61.111 0.00 0.00 35.01 3.41
875 1299 3.680786 CACAGCCGTCCTCGTCCA 61.681 66.667 0.00 0.00 35.01 4.02
877 1301 3.973267 GAGCACAGCCGTCCTCGTC 62.973 68.421 0.00 0.00 35.01 4.20
878 1302 4.057428 GAGCACAGCCGTCCTCGT 62.057 66.667 0.00 0.00 35.01 4.18
879 1303 4.056125 TGAGCACAGCCGTCCTCG 62.056 66.667 0.00 0.00 0.00 4.63
880 1304 2.433318 GTGAGCACAGCCGTCCTC 60.433 66.667 0.00 0.00 0.00 3.71
881 1305 4.363990 CGTGAGCACAGCCGTCCT 62.364 66.667 1.20 0.00 0.00 3.85
882 1306 4.664677 ACGTGAGCACAGCCGTCC 62.665 66.667 1.20 0.00 0.00 4.79
883 1307 3.406361 CACGTGAGCACAGCCGTC 61.406 66.667 10.90 0.00 28.85 4.79
907 1331 5.643348 ACATAACGCATGTGATCTTCTTTGA 59.357 36.000 14.43 0.00 46.41 2.69
908 1332 5.872635 ACATAACGCATGTGATCTTCTTTG 58.127 37.500 14.43 1.91 46.41 2.77
922 1418 0.391927 GGGCAGGTACACATAACGCA 60.392 55.000 0.00 0.00 0.00 5.24
923 1419 0.107848 AGGGCAGGTACACATAACGC 60.108 55.000 0.00 0.00 0.00 4.84
924 1420 1.472728 GGAGGGCAGGTACACATAACG 60.473 57.143 0.00 0.00 0.00 3.18
925 1421 1.838077 AGGAGGGCAGGTACACATAAC 59.162 52.381 0.00 0.00 0.00 1.89
926 1422 1.837439 CAGGAGGGCAGGTACACATAA 59.163 52.381 0.00 0.00 0.00 1.90
927 1423 1.007842 TCAGGAGGGCAGGTACACATA 59.992 52.381 0.00 0.00 0.00 2.29
928 1424 0.252696 TCAGGAGGGCAGGTACACAT 60.253 55.000 0.00 0.00 0.00 3.21
929 1425 0.472925 TTCAGGAGGGCAGGTACACA 60.473 55.000 0.00 0.00 0.00 3.72
930 1426 0.912486 ATTCAGGAGGGCAGGTACAC 59.088 55.000 0.00 0.00 0.00 2.90
931 1427 2.561209 TATTCAGGAGGGCAGGTACA 57.439 50.000 0.00 0.00 0.00 2.90
932 1428 4.137543 CAATTATTCAGGAGGGCAGGTAC 58.862 47.826 0.00 0.00 0.00 3.34
933 1429 3.138283 CCAATTATTCAGGAGGGCAGGTA 59.862 47.826 0.00 0.00 0.00 3.08
934 1430 2.091665 CCAATTATTCAGGAGGGCAGGT 60.092 50.000 0.00 0.00 0.00 4.00
935 1431 2.590821 CCAATTATTCAGGAGGGCAGG 58.409 52.381 0.00 0.00 0.00 4.85
936 1432 2.091665 ACCCAATTATTCAGGAGGGCAG 60.092 50.000 0.00 0.00 39.97 4.85
937 1433 1.929494 ACCCAATTATTCAGGAGGGCA 59.071 47.619 0.00 0.00 39.97 5.36
938 1434 2.755952 ACCCAATTATTCAGGAGGGC 57.244 50.000 0.00 0.00 39.97 5.19
939 1435 3.706086 CCAAACCCAATTATTCAGGAGGG 59.294 47.826 0.00 0.00 42.07 4.30
940 1436 4.609301 TCCAAACCCAATTATTCAGGAGG 58.391 43.478 0.00 0.00 0.00 4.30
941 1437 7.725397 TCATATCCAAACCCAATTATTCAGGAG 59.275 37.037 0.00 0.00 0.00 3.69
942 1438 7.590907 TCATATCCAAACCCAATTATTCAGGA 58.409 34.615 0.00 0.00 0.00 3.86
943 1439 7.725397 TCTCATATCCAAACCCAATTATTCAGG 59.275 37.037 0.00 0.00 0.00 3.86
944 1440 8.696043 TCTCATATCCAAACCCAATTATTCAG 57.304 34.615 0.00 0.00 0.00 3.02
945 1441 9.135189 CTTCTCATATCCAAACCCAATTATTCA 57.865 33.333 0.00 0.00 0.00 2.57
956 1452 4.333926 GTCACAGGCTTCTCATATCCAAAC 59.666 45.833 0.00 0.00 0.00 2.93
990 1632 4.335416 GGAGTTTGTCCATGGAGATTGAA 58.665 43.478 16.81 2.06 46.10 2.69
991 1633 3.955471 GGAGTTTGTCCATGGAGATTGA 58.045 45.455 16.81 0.00 46.10 2.57
1038 1702 3.244735 GGAAGAAGAAGGGAGCAAAGACT 60.245 47.826 0.00 0.00 0.00 3.24
1047 1711 3.465588 TCCCAAAAAGGAAGAAGAAGGGA 59.534 43.478 0.00 0.00 41.22 4.20
1062 1726 2.975799 GCCGACGTGCTCCCAAAA 60.976 61.111 0.00 0.00 0.00 2.44
1227 1891 0.532862 CCGTGCTGTTCTTCCACAGT 60.533 55.000 2.95 0.00 45.31 3.55
1403 2074 4.769688 AGTGATTGATTCCGATGCTTACA 58.230 39.130 0.00 0.00 0.00 2.41
1427 2098 9.956640 GAGCTAGGGAACATAACTATACTACTA 57.043 37.037 0.00 0.00 0.00 1.82
1428 2099 8.446394 TGAGCTAGGGAACATAACTATACTACT 58.554 37.037 0.00 0.00 0.00 2.57
1429 2100 8.513774 GTGAGCTAGGGAACATAACTATACTAC 58.486 40.741 0.00 0.00 0.00 2.73
1430 2101 7.389884 CGTGAGCTAGGGAACATAACTATACTA 59.610 40.741 0.00 0.00 0.00 1.82
1431 2102 6.207025 CGTGAGCTAGGGAACATAACTATACT 59.793 42.308 0.00 0.00 0.00 2.12
1432 2103 6.380190 CGTGAGCTAGGGAACATAACTATAC 58.620 44.000 0.00 0.00 0.00 1.47
1433 2104 6.570672 CGTGAGCTAGGGAACATAACTATA 57.429 41.667 0.00 0.00 0.00 1.31
1434 2105 5.455056 CGTGAGCTAGGGAACATAACTAT 57.545 43.478 0.00 0.00 0.00 2.12
1435 2106 4.913335 CGTGAGCTAGGGAACATAACTA 57.087 45.455 0.00 0.00 0.00 2.24
1436 2107 3.802948 CGTGAGCTAGGGAACATAACT 57.197 47.619 0.00 0.00 0.00 2.24
1465 2136 0.397941 CTCCTCCACAGGTTGAGCAA 59.602 55.000 0.00 0.00 41.28 3.91
1467 2138 1.376553 GCTCCTCCACAGGTTGAGC 60.377 63.158 11.59 11.59 41.28 4.26
1468 2139 0.036577 CTGCTCCTCCACAGGTTGAG 60.037 60.000 0.00 0.00 41.28 3.02
1469 2140 1.483595 CCTGCTCCTCCACAGGTTGA 61.484 60.000 0.79 0.00 46.95 3.18
1470 2141 1.002868 CCTGCTCCTCCACAGGTTG 60.003 63.158 0.79 0.00 46.95 3.77
1497 2181 1.776662 CCTCCACGAGTCTTCCCATA 58.223 55.000 0.00 0.00 0.00 2.74
1506 2190 2.915659 TCCAACGCCTCCACGAGT 60.916 61.111 0.00 0.00 36.70 4.18
1529 2213 4.918129 CGCCGTCGATGTACCCGG 62.918 72.222 3.52 4.65 43.22 5.73
2019 3898 1.878656 GCGACAGGTACAGCCTCACT 61.879 60.000 0.00 0.00 46.96 3.41
2261 4147 3.370953 GGTGTTGGCCATTCTGATAGACT 60.371 47.826 6.09 0.00 0.00 3.24
2270 4156 1.532794 TGGGTGGTGTTGGCCATTC 60.533 57.895 6.09 3.51 41.08 2.67
2370 4256 1.308069 GGCAGTGGGTAGCACACATG 61.308 60.000 13.58 0.00 41.21 3.21
2371 4257 1.002134 GGCAGTGGGTAGCACACAT 60.002 57.895 13.58 0.44 41.21 3.21
2374 4260 4.015406 CCGGCAGTGGGTAGCACA 62.015 66.667 0.00 0.00 0.00 4.57
2421 4307 5.665916 AAGGTAAAAGAAGATGGGCATTG 57.334 39.130 0.00 0.00 0.00 2.82
2462 4348 7.692172 AGAAACCCCAAAAATTTGATGATGAT 58.308 30.769 7.44 0.00 40.55 2.45
2464 4350 7.118680 CAGAGAAACCCCAAAAATTTGATGATG 59.881 37.037 7.44 0.71 40.55 3.07
2480 4366 2.192263 AGGTGAGATCCAGAGAAACCC 58.808 52.381 0.00 0.00 0.00 4.11
2544 4430 0.107508 CAGATGCATCACGTTCCCCT 60.108 55.000 27.81 1.29 0.00 4.79
2545 4431 1.097547 CCAGATGCATCACGTTCCCC 61.098 60.000 27.81 0.00 0.00 4.81
2595 4488 1.079819 CACGAATCACAGACCGCCT 60.080 57.895 0.00 0.00 0.00 5.52
2600 4493 1.195448 CCTGTTGCACGAATCACAGAC 59.805 52.381 14.16 0.00 0.00 3.51
2619 4512 1.917872 TACATTTTGTGTGGGCCTCC 58.082 50.000 4.53 0.00 42.24 4.30
2620 4513 5.127031 ACAATATACATTTTGTGTGGGCCTC 59.873 40.000 4.53 0.49 42.24 4.70
2621 4514 5.022787 ACAATATACATTTTGTGTGGGCCT 58.977 37.500 4.53 0.00 42.24 5.19
2622 4515 5.337578 ACAATATACATTTTGTGTGGGCC 57.662 39.130 0.00 0.00 42.24 5.80
2623 4516 6.090628 CACAACAATATACATTTTGTGTGGGC 59.909 38.462 10.84 0.00 42.24 5.36
2624 4517 7.151308 ACACAACAATATACATTTTGTGTGGG 58.849 34.615 18.30 9.93 44.11 4.61
2625 4518 9.684448 TTACACAACAATATACATTTTGTGTGG 57.316 29.630 23.12 7.87 44.62 4.17
2669 4562 1.592669 CCCGCAGCTTGGTAGATCG 60.593 63.158 1.26 0.00 0.00 3.69
2683 4576 4.185286 AACCCTAATCGCCCCCGC 62.185 66.667 0.00 0.00 0.00 6.13
2720 4615 1.838073 GCGAGAAAGGAAGGGGGTGA 61.838 60.000 0.00 0.00 0.00 4.02
2721 4616 1.377333 GCGAGAAAGGAAGGGGGTG 60.377 63.158 0.00 0.00 0.00 4.61
2722 4617 2.603652 GGCGAGAAAGGAAGGGGGT 61.604 63.158 0.00 0.00 0.00 4.95
2794 4689 2.833582 GAGTGCCGAGATCCCCGA 60.834 66.667 6.68 0.00 0.00 5.14
2958 4853 2.748605 GGATTCCACTAGCGACTCATG 58.251 52.381 0.00 0.00 0.00 3.07
2959 4854 1.338337 CGGATTCCACTAGCGACTCAT 59.662 52.381 3.09 0.00 0.00 2.90
2960 4855 0.738975 CGGATTCCACTAGCGACTCA 59.261 55.000 3.09 0.00 0.00 3.41
2962 4857 2.017559 GCCGGATTCCACTAGCGACT 62.018 60.000 5.05 0.00 0.00 4.18
2983 4878 3.833645 AATAGAGCACCGCGCCGA 61.834 61.111 0.00 0.00 44.04 5.54
3094 5004 1.692428 CCCCGGACCCCAAATACAA 59.308 57.895 0.73 0.00 0.00 2.41
3180 5091 0.391263 GTTTGGGACCTCAGCTACGG 60.391 60.000 0.00 0.00 0.00 4.02
3183 5094 2.185387 GGTAGTTTGGGACCTCAGCTA 58.815 52.381 0.00 0.00 32.58 3.32
3290 5202 0.324552 CCCAAGGCCCATGATGACAA 60.325 55.000 0.00 0.00 0.00 3.18
3338 5250 2.534011 TTGTCCCATCCCCCTGCA 60.534 61.111 0.00 0.00 0.00 4.41
3340 5252 1.304282 CACTTGTCCCATCCCCCTG 59.696 63.158 0.00 0.00 0.00 4.45
3341 5253 1.930656 CCACTTGTCCCATCCCCCT 60.931 63.158 0.00 0.00 0.00 4.79
3354 5267 0.756442 AACACCACATGCTGCCACTT 60.756 50.000 0.00 0.00 0.00 3.16
3365 5278 1.300620 CTCCTTCGCGAACACCACA 60.301 57.895 19.38 0.00 0.00 4.17
3419 5332 2.110627 GCTCCATGCCGCTGAGAT 59.889 61.111 8.67 0.00 35.15 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.