Multiple sequence alignment - TraesCS6A01G055300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G055300 chr6A 100.000 6147 0 0 1 6147 29078454 29072308 0.000000e+00 11352.0
1 TraesCS6A01G055300 chr6A 93.474 521 33 1 5323 5842 29020012 29019492 0.000000e+00 773.0
2 TraesCS6A01G055300 chr6A 93.282 521 34 1 5323 5842 28923161 28922641 0.000000e+00 767.0
3 TraesCS6A01G055300 chr6A 92.706 521 37 1 5323 5842 28945113 28944593 0.000000e+00 750.0
4 TraesCS6A01G055300 chr6A 84.842 475 66 4 5564 6034 29125659 29126131 2.010000e-129 473.0
5 TraesCS6A01G055300 chr6A 89.783 323 30 3 5828 6147 28961925 28961603 1.590000e-110 411.0
6 TraesCS6A01G055300 chr6A 89.441 322 32 2 5828 6147 28903869 28903548 7.420000e-109 405.0
7 TraesCS6A01G055300 chr6A 87.432 183 20 2 5939 6120 29127201 29127381 2.250000e-49 207.0
8 TraesCS6A01G055300 chrUn 89.923 4833 308 92 1436 6147 103532999 103537773 0.000000e+00 6061.0
9 TraesCS6A01G055300 chrUn 91.030 2107 112 23 3075 5156 103504578 103502524 0.000000e+00 2772.0
10 TraesCS6A01G055300 chrUn 91.574 629 41 7 533 1157 103532305 103532925 0.000000e+00 857.0
11 TraesCS6A01G055300 chrUn 91.963 535 41 2 2 536 103531479 103532011 0.000000e+00 749.0
12 TraesCS6A01G055300 chrUn 92.490 506 35 2 5643 6147 103544870 103545373 0.000000e+00 721.0
13 TraesCS6A01G055300 chrUn 87.354 427 40 7 781 1207 103509160 103508748 1.550000e-130 477.0
14 TraesCS6A01G055300 chrUn 86.567 268 26 9 5201 5466 103502447 103502188 2.800000e-73 287.0
15 TraesCS6A01G055300 chrUn 86.861 137 15 3 610 745 103509299 103509165 3.840000e-32 150.0
16 TraesCS6A01G055300 chr6B 92.699 2753 147 18 2440 5152 54892647 54895385 0.000000e+00 3921.0
17 TraesCS6A01G055300 chr6B 91.067 1153 57 15 2 1154 54890396 54891502 0.000000e+00 1517.0
18 TraesCS6A01G055300 chr6B 89.890 544 36 10 5168 5701 54896972 54897506 0.000000e+00 682.0
19 TraesCS6A01G055300 chr6B 87.985 541 42 9 4623 5156 54732773 54732249 8.750000e-173 617.0
20 TraesCS6A01G055300 chr6B 88.000 525 45 10 1411 1930 54891501 54892012 6.820000e-169 604.0
21 TraesCS6A01G055300 chr6B 85.331 559 56 13 610 1157 54765583 54765040 6.960000e-154 555.0
22 TraesCS6A01G055300 chr6B 82.527 641 83 19 1848 2471 54892011 54892639 2.520000e-148 536.0
23 TraesCS6A01G055300 chr6B 85.458 502 50 13 1436 1929 54764969 54764483 9.200000e-138 501.0
24 TraesCS6A01G055300 chr6B 86.064 409 34 9 4755 5156 54779995 54779603 9.530000e-113 418.0
25 TraesCS6A01G055300 chr6B 91.197 284 23 1 5738 6021 54897492 54897773 9.670000e-103 385.0
26 TraesCS6A01G055300 chr6B 85.656 244 29 4 1850 2093 54764481 54764244 1.020000e-62 252.0
27 TraesCS6A01G055300 chr6B 88.152 211 7 2 5937 6147 54700017 54699825 1.030000e-57 235.0
28 TraesCS6A01G055300 chr6B 87.204 211 9 2 5937 6147 54698234 54698042 2.230000e-54 224.0
29 TraesCS6A01G055300 chr6B 88.281 128 12 2 6020 6147 54730348 54730224 3.840000e-32 150.0
30 TraesCS6A01G055300 chr4D 82.204 1624 198 61 3000 4585 111039456 111041026 0.000000e+00 1314.0
31 TraesCS6A01G055300 chr4B 81.008 1111 154 38 3000 4081 171183350 171182268 0.000000e+00 830.0
32 TraesCS6A01G055300 chr4B 88.836 421 45 2 4166 4585 171182270 171181851 3.290000e-142 516.0
33 TraesCS6A01G055300 chr4A 80.144 1113 160 37 3000 4081 466109966 466108884 0.000000e+00 774.0
34 TraesCS6A01G055300 chr4A 89.074 421 44 2 4166 4585 466108886 466108467 7.060000e-144 521.0
35 TraesCS6A01G055300 chr3B 86.842 304 34 6 2439 2739 565726874 565726574 9.870000e-88 335.0
36 TraesCS6A01G055300 chr3A 84.839 310 43 4 2433 2739 571409059 571408751 5.980000e-80 309.0
37 TraesCS6A01G055300 chr2B 81.597 288 36 12 2455 2739 36088685 36088412 8.020000e-54 222.0
38 TraesCS6A01G055300 chr2D 85.279 197 23 5 2439 2632 24265635 24265442 1.350000e-46 198.0
39 TraesCS6A01G055300 chr7D 91.429 70 4 2 2609 2676 34000184 34000253 1.820000e-15 95.3
40 TraesCS6A01G055300 chr1B 82.301 113 17 3 2433 2543 453137502 453137613 1.820000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G055300 chr6A 29072308 29078454 6146 True 11352.000000 11352 100.000000 1 6147 1 chr6A.!!$R6 6146
1 TraesCS6A01G055300 chr6A 29019492 29020012 520 True 773.000000 773 93.474000 5323 5842 1 chr6A.!!$R5 519
2 TraesCS6A01G055300 chr6A 28922641 28923161 520 True 767.000000 767 93.282000 5323 5842 1 chr6A.!!$R2 519
3 TraesCS6A01G055300 chr6A 28944593 28945113 520 True 750.000000 750 92.706000 5323 5842 1 chr6A.!!$R3 519
4 TraesCS6A01G055300 chr6A 29125659 29127381 1722 False 340.000000 473 86.137000 5564 6120 2 chr6A.!!$F1 556
5 TraesCS6A01G055300 chrUn 103531479 103537773 6294 False 2555.666667 6061 91.153333 2 6147 3 chrUn.!!$F2 6145
6 TraesCS6A01G055300 chrUn 103502188 103504578 2390 True 1529.500000 2772 88.798500 3075 5466 2 chrUn.!!$R1 2391
7 TraesCS6A01G055300 chrUn 103544870 103545373 503 False 721.000000 721 92.490000 5643 6147 1 chrUn.!!$F1 504
8 TraesCS6A01G055300 chrUn 103508748 103509299 551 True 313.500000 477 87.107500 610 1207 2 chrUn.!!$R2 597
9 TraesCS6A01G055300 chr6B 54890396 54897773 7377 False 1274.166667 3921 89.230000 2 6021 6 chr6B.!!$F1 6019
10 TraesCS6A01G055300 chr6B 54764244 54765583 1339 True 436.000000 555 85.481667 610 2093 3 chr6B.!!$R4 1483
11 TraesCS6A01G055300 chr6B 54730224 54732773 2549 True 383.500000 617 88.133000 4623 6147 2 chr6B.!!$R3 1524
12 TraesCS6A01G055300 chr6B 54698042 54700017 1975 True 229.500000 235 87.678000 5937 6147 2 chr6B.!!$R2 210
13 TraesCS6A01G055300 chr4D 111039456 111041026 1570 False 1314.000000 1314 82.204000 3000 4585 1 chr4D.!!$F1 1585
14 TraesCS6A01G055300 chr4B 171181851 171183350 1499 True 673.000000 830 84.922000 3000 4585 2 chr4B.!!$R1 1585
15 TraesCS6A01G055300 chr4A 466108467 466109966 1499 True 647.500000 774 84.609000 3000 4585 2 chr4A.!!$R1 1585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.994995 CGATTTCACTGCAGGAGACG 59.005 55.0 19.93 11.34 0.0 4.18 F
1208 1565 0.108585 TCCTCCTTGCTTGCGACTTT 59.891 50.0 0.00 0.00 0.0 2.66 F
1283 1640 0.104120 TGTGGAATGGAGCGATACGG 59.896 55.0 0.00 0.00 0.0 4.02 F
2226 2698 0.034337 TGCCGTCCTAGAAAAGCGTT 59.966 50.0 0.00 0.00 0.0 4.84 F
2326 2818 0.179215 GCAAGGCATCGAACGAACAG 60.179 55.0 0.12 0.00 0.0 3.16 F
2331 2823 0.931005 GCATCGAACGAACAGATCCC 59.069 55.0 0.12 0.00 0.0 3.85 F
2387 2880 1.063806 CACCTCACGCTTCTTCTTCG 58.936 55.0 0.00 0.00 0.0 3.79 F
4110 4761 0.317519 CGCAAAGAACCCACCGAAAC 60.318 55.0 0.00 0.00 0.0 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1264 1621 0.104120 CCGTATCGCTCCATTCCACA 59.896 55.000 0.00 0.0 0.00 4.17 R
2164 2634 0.179234 TGTGGCAGAAAGGACGACAA 59.821 50.000 0.00 0.0 0.00 3.18 R
2300 2792 0.390998 TTCGATGCCTTGCGACATCA 60.391 50.000 5.62 0.0 42.28 3.07 R
3752 4400 1.272490 TCGATCTTCGCCACCATATCC 59.728 52.381 0.00 0.0 40.21 2.59 R
3834 4485 4.479993 CTGGAAGCCTCCCCGCTG 62.480 72.222 0.00 0.0 41.64 5.18 R
4110 4761 7.646314 AGCATATCCAAAAATTTCTCATCGAG 58.354 34.615 0.00 0.0 0.00 4.04 R
4418 5073 0.396811 GATACCTGGGGTTGGGATCG 59.603 60.000 0.00 0.0 35.46 3.69 R
5708 9099 0.370273 CAATGCTACAACCGTCGAGC 59.630 55.000 0.00 0.0 35.43 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.715070 CAAGTTGGTTCAACCTTACACAAA 58.285 37.500 8.40 0.00 44.49 2.83
112 113 4.020128 AGGACTCACCCTTACTTTAGCTTG 60.020 45.833 0.00 0.00 40.05 4.01
142 143 3.608796 TCCCCGACCCTAATTTTTAACG 58.391 45.455 0.00 0.00 0.00 3.18
146 147 4.641541 CCCGACCCTAATTTTTAACGGAAT 59.358 41.667 0.00 0.00 41.30 3.01
188 189 0.994995 CGATTTCACTGCAGGAGACG 59.005 55.000 19.93 11.34 0.00 4.18
197 198 2.711922 GCAGGAGACGGGTCATCGT 61.712 63.158 1.17 0.00 46.83 3.73
205 206 3.515286 GGGTCATCGTCTCCGCGA 61.515 66.667 8.23 0.00 45.32 5.87
266 267 2.106511 ACCCTGACCATGGATAATTCCG 59.893 50.000 21.47 0.93 45.89 4.30
348 349 1.118965 TCCGTGCTTCCAGTCCTCAA 61.119 55.000 0.00 0.00 0.00 3.02
401 402 4.475135 GAGGGGCAGGAAGGCGAC 62.475 72.222 0.00 0.00 45.36 5.19
419 420 1.217244 CAGCCTTCCTTTGCATGCC 59.783 57.895 16.68 0.00 0.00 4.40
468 470 5.907197 ATTCTACACGACAAAACACAGAG 57.093 39.130 0.00 0.00 0.00 3.35
485 487 2.004017 AGAGTCGTTGCGAACAAACAA 58.996 42.857 0.00 0.00 37.72 2.83
568 867 2.171448 AGTACAAGGAGATGGATGCACC 59.829 50.000 0.00 0.00 39.54 5.01
610 937 6.783892 TTTCATGAGTTTATTTTTGCAGCC 57.216 33.333 0.00 0.00 0.00 4.85
611 938 5.726980 TCATGAGTTTATTTTTGCAGCCT 57.273 34.783 0.00 0.00 0.00 4.58
612 939 5.713025 TCATGAGTTTATTTTTGCAGCCTC 58.287 37.500 0.00 0.00 0.00 4.70
613 940 5.243507 TCATGAGTTTATTTTTGCAGCCTCA 59.756 36.000 0.00 0.00 32.80 3.86
614 941 5.726980 TGAGTTTATTTTTGCAGCCTCAT 57.273 34.783 0.00 0.00 0.00 2.90
617 944 6.646240 TGAGTTTATTTTTGCAGCCTCATTTC 59.354 34.615 0.00 0.00 0.00 2.17
797 1134 1.615392 GCTGCAAAGTCATTGGAACCT 59.385 47.619 0.00 0.00 39.03 3.50
1017 1360 4.260355 ATGCATGCACGGCGATGC 62.260 61.111 25.37 20.96 46.32 3.91
1193 1550 4.818005 TGGTTTTCTTAACCGTTTCTCCTC 59.182 41.667 0.00 0.00 43.15 3.71
1208 1565 0.108585 TCCTCCTTGCTTGCGACTTT 59.891 50.000 0.00 0.00 0.00 2.66
1209 1566 0.954452 CCTCCTTGCTTGCGACTTTT 59.046 50.000 0.00 0.00 0.00 2.27
1210 1567 2.151202 CCTCCTTGCTTGCGACTTTTA 58.849 47.619 0.00 0.00 0.00 1.52
1212 1569 3.067106 CTCCTTGCTTGCGACTTTTAGA 58.933 45.455 0.00 0.00 0.00 2.10
1213 1570 3.674997 TCCTTGCTTGCGACTTTTAGAT 58.325 40.909 0.00 0.00 0.00 1.98
1214 1571 3.684788 TCCTTGCTTGCGACTTTTAGATC 59.315 43.478 0.00 0.00 0.00 2.75
1215 1572 3.181506 CCTTGCTTGCGACTTTTAGATCC 60.182 47.826 0.00 0.00 0.00 3.36
1216 1573 3.334583 TGCTTGCGACTTTTAGATCCT 57.665 42.857 0.00 0.00 0.00 3.24
1217 1574 3.002791 TGCTTGCGACTTTTAGATCCTG 58.997 45.455 0.00 0.00 0.00 3.86
1218 1575 3.003480 GCTTGCGACTTTTAGATCCTGT 58.997 45.455 0.00 0.00 0.00 4.00
1219 1576 3.437049 GCTTGCGACTTTTAGATCCTGTT 59.563 43.478 0.00 0.00 0.00 3.16
1220 1577 4.083271 GCTTGCGACTTTTAGATCCTGTTT 60.083 41.667 0.00 0.00 0.00 2.83
1221 1578 5.356882 TTGCGACTTTTAGATCCTGTTTG 57.643 39.130 0.00 0.00 0.00 2.93
1222 1579 3.751175 TGCGACTTTTAGATCCTGTTTGG 59.249 43.478 0.00 0.00 37.10 3.28
1223 1580 3.751698 GCGACTTTTAGATCCTGTTTGGT 59.248 43.478 0.00 0.00 37.07 3.67
1224 1581 4.933400 GCGACTTTTAGATCCTGTTTGGTA 59.067 41.667 0.00 0.00 37.07 3.25
1225 1582 5.410439 GCGACTTTTAGATCCTGTTTGGTAA 59.590 40.000 0.00 0.00 37.07 2.85
1226 1583 6.093633 GCGACTTTTAGATCCTGTTTGGTAAT 59.906 38.462 0.00 0.00 37.07 1.89
1227 1584 7.676572 GCGACTTTTAGATCCTGTTTGGTAATC 60.677 40.741 0.00 0.00 37.07 1.75
1228 1585 7.333423 CGACTTTTAGATCCTGTTTGGTAATCA 59.667 37.037 0.00 0.00 37.07 2.57
1229 1586 8.336801 ACTTTTAGATCCTGTTTGGTAATCAC 57.663 34.615 0.00 0.00 37.07 3.06
1230 1587 7.393515 ACTTTTAGATCCTGTTTGGTAATCACC 59.606 37.037 0.00 0.00 46.00 4.02
1231 1588 4.236527 AGATCCTGTTTGGTAATCACCC 57.763 45.455 0.00 0.00 45.11 4.61
1232 1589 3.591527 AGATCCTGTTTGGTAATCACCCA 59.408 43.478 0.00 0.00 45.11 4.51
1233 1590 4.230502 AGATCCTGTTTGGTAATCACCCAT 59.769 41.667 0.00 0.00 45.11 4.00
1234 1591 4.396357 TCCTGTTTGGTAATCACCCATT 57.604 40.909 0.00 0.00 45.11 3.16
1235 1592 4.340617 TCCTGTTTGGTAATCACCCATTC 58.659 43.478 0.00 0.00 45.11 2.67
1236 1593 4.044065 TCCTGTTTGGTAATCACCCATTCT 59.956 41.667 0.00 0.00 45.11 2.40
1237 1594 4.772100 CCTGTTTGGTAATCACCCATTCTT 59.228 41.667 0.00 0.00 45.11 2.52
1238 1595 5.336690 CCTGTTTGGTAATCACCCATTCTTG 60.337 44.000 0.00 0.00 45.11 3.02
1239 1596 5.389520 TGTTTGGTAATCACCCATTCTTGA 58.610 37.500 0.00 0.00 45.11 3.02
1240 1597 5.835819 TGTTTGGTAATCACCCATTCTTGAA 59.164 36.000 0.00 0.00 45.11 2.69
1241 1598 6.325028 TGTTTGGTAATCACCCATTCTTGAAA 59.675 34.615 0.00 0.00 45.11 2.69
1242 1599 7.016072 TGTTTGGTAATCACCCATTCTTGAAAT 59.984 33.333 0.00 0.00 45.11 2.17
1243 1600 6.773976 TGGTAATCACCCATTCTTGAAATC 57.226 37.500 0.00 0.00 45.11 2.17
1244 1601 5.656416 TGGTAATCACCCATTCTTGAAATCC 59.344 40.000 0.00 0.00 45.11 3.01
1245 1602 4.989279 AATCACCCATTCTTGAAATCCG 57.011 40.909 0.00 0.00 0.00 4.18
1246 1603 2.091541 TCACCCATTCTTGAAATCCGC 58.908 47.619 0.00 0.00 0.00 5.54
1247 1604 1.094785 ACCCATTCTTGAAATCCGCG 58.905 50.000 0.00 0.00 0.00 6.46
1248 1605 0.381801 CCCATTCTTGAAATCCGCGG 59.618 55.000 22.12 22.12 0.00 6.46
1249 1606 1.378531 CCATTCTTGAAATCCGCGGA 58.621 50.000 33.12 33.12 0.00 5.54
1250 1607 1.331756 CCATTCTTGAAATCCGCGGAG 59.668 52.381 33.87 18.57 0.00 4.63
1263 1620 2.657237 CGGAGCCGGAAGTGAAGT 59.343 61.111 5.05 0.00 35.56 3.01
1264 1621 1.004918 CGGAGCCGGAAGTGAAGTT 60.005 57.895 5.05 0.00 35.56 2.66
1265 1622 1.291877 CGGAGCCGGAAGTGAAGTTG 61.292 60.000 5.05 0.00 35.56 3.16
1266 1623 0.250338 GGAGCCGGAAGTGAAGTTGT 60.250 55.000 5.05 0.00 0.00 3.32
1267 1624 0.868406 GAGCCGGAAGTGAAGTTGTG 59.132 55.000 5.05 0.00 0.00 3.33
1268 1625 0.535102 AGCCGGAAGTGAAGTTGTGG 60.535 55.000 5.05 0.00 0.00 4.17
1269 1626 0.534203 GCCGGAAGTGAAGTTGTGGA 60.534 55.000 5.05 0.00 0.00 4.02
1270 1627 1.961793 CCGGAAGTGAAGTTGTGGAA 58.038 50.000 0.00 0.00 0.00 3.53
1271 1628 2.504367 CCGGAAGTGAAGTTGTGGAAT 58.496 47.619 0.00 0.00 0.00 3.01
1272 1629 2.226437 CCGGAAGTGAAGTTGTGGAATG 59.774 50.000 0.00 0.00 0.00 2.67
1273 1630 2.226437 CGGAAGTGAAGTTGTGGAATGG 59.774 50.000 0.00 0.00 0.00 3.16
1274 1631 3.486383 GGAAGTGAAGTTGTGGAATGGA 58.514 45.455 0.00 0.00 0.00 3.41
1275 1632 3.503748 GGAAGTGAAGTTGTGGAATGGAG 59.496 47.826 0.00 0.00 0.00 3.86
1276 1633 2.508526 AGTGAAGTTGTGGAATGGAGC 58.491 47.619 0.00 0.00 0.00 4.70
1277 1634 1.197721 GTGAAGTTGTGGAATGGAGCG 59.802 52.381 0.00 0.00 0.00 5.03
1278 1635 1.071542 TGAAGTTGTGGAATGGAGCGA 59.928 47.619 0.00 0.00 0.00 4.93
1279 1636 2.290260 TGAAGTTGTGGAATGGAGCGAT 60.290 45.455 0.00 0.00 0.00 4.58
1280 1637 3.055458 TGAAGTTGTGGAATGGAGCGATA 60.055 43.478 0.00 0.00 0.00 2.92
1281 1638 2.906354 AGTTGTGGAATGGAGCGATAC 58.094 47.619 0.00 0.00 0.00 2.24
1282 1639 1.593006 GTTGTGGAATGGAGCGATACG 59.407 52.381 0.00 0.00 0.00 3.06
1283 1640 0.104120 TGTGGAATGGAGCGATACGG 59.896 55.000 0.00 0.00 0.00 4.02
1284 1641 0.387929 GTGGAATGGAGCGATACGGA 59.612 55.000 0.00 0.00 0.00 4.69
1285 1642 1.116308 TGGAATGGAGCGATACGGAA 58.884 50.000 0.00 0.00 0.00 4.30
1286 1643 1.202486 TGGAATGGAGCGATACGGAAC 60.202 52.381 0.00 0.00 0.00 3.62
1287 1644 1.202486 GGAATGGAGCGATACGGAACA 60.202 52.381 0.00 0.00 0.00 3.18
1288 1645 2.128035 GAATGGAGCGATACGGAACAG 58.872 52.381 0.00 0.00 0.00 3.16
1289 1646 0.249489 ATGGAGCGATACGGAACAGC 60.249 55.000 0.00 0.00 0.00 4.40
1290 1647 1.944676 GGAGCGATACGGAACAGCG 60.945 63.158 0.00 0.00 0.00 5.18
1291 1648 1.226603 GAGCGATACGGAACAGCGT 60.227 57.895 0.00 0.00 0.00 5.07
1292 1649 1.201098 GAGCGATACGGAACAGCGTC 61.201 60.000 0.00 0.00 0.00 5.19
1293 1650 1.226603 GCGATACGGAACAGCGTCT 60.227 57.895 0.00 0.00 0.00 4.18
1294 1651 0.801067 GCGATACGGAACAGCGTCTT 60.801 55.000 0.00 0.00 0.00 3.01
1295 1652 1.532505 GCGATACGGAACAGCGTCTTA 60.533 52.381 0.00 0.00 0.00 2.10
1296 1653 2.107178 CGATACGGAACAGCGTCTTAC 58.893 52.381 0.00 0.00 0.00 2.34
1297 1654 2.223203 CGATACGGAACAGCGTCTTACT 60.223 50.000 0.00 0.00 0.00 2.24
1298 1655 2.624316 TACGGAACAGCGTCTTACTG 57.376 50.000 0.00 0.00 41.08 2.74
1299 1656 0.666577 ACGGAACAGCGTCTTACTGC 60.667 55.000 0.00 0.00 38.79 4.40
1377 1737 9.516314 GTAATAAAAAGATGCATACTGGTTTCC 57.484 33.333 0.00 0.00 0.00 3.13
1378 1738 5.405935 AAAAAGATGCATACTGGTTTCCC 57.594 39.130 0.00 0.00 0.00 3.97
1379 1739 3.737559 AAGATGCATACTGGTTTCCCA 57.262 42.857 0.00 0.00 38.87 4.37
1388 1748 3.650647 TGGTTTCCCAGCAGACATC 57.349 52.632 0.00 0.00 35.17 3.06
1389 1749 0.770499 TGGTTTCCCAGCAGACATCA 59.230 50.000 0.00 0.00 35.17 3.07
1390 1750 1.144708 TGGTTTCCCAGCAGACATCAA 59.855 47.619 0.00 0.00 35.17 2.57
1391 1751 2.238521 GGTTTCCCAGCAGACATCAAA 58.761 47.619 0.00 0.00 0.00 2.69
1392 1752 2.627699 GGTTTCCCAGCAGACATCAAAA 59.372 45.455 0.00 0.00 0.00 2.44
1393 1753 3.552890 GGTTTCCCAGCAGACATCAAAAC 60.553 47.826 0.00 0.00 0.00 2.43
1394 1754 1.909700 TCCCAGCAGACATCAAAACC 58.090 50.000 0.00 0.00 0.00 3.27
1395 1755 1.144708 TCCCAGCAGACATCAAAACCA 59.855 47.619 0.00 0.00 0.00 3.67
1396 1756 1.542915 CCCAGCAGACATCAAAACCAG 59.457 52.381 0.00 0.00 0.00 4.00
1397 1757 2.507484 CCAGCAGACATCAAAACCAGA 58.493 47.619 0.00 0.00 0.00 3.86
1398 1758 3.087031 CCAGCAGACATCAAAACCAGAT 58.913 45.455 0.00 0.00 0.00 2.90
1399 1759 3.119602 CCAGCAGACATCAAAACCAGATG 60.120 47.826 0.00 0.00 46.38 2.90
1410 1770 8.456904 CATCAAAACCAGATGTGTGAATTTAG 57.543 34.615 0.00 0.00 38.40 1.85
1411 1771 6.446318 TCAAAACCAGATGTGTGAATTTAGC 58.554 36.000 0.00 0.00 0.00 3.09
1412 1772 6.040278 TCAAAACCAGATGTGTGAATTTAGCA 59.960 34.615 0.00 0.00 0.00 3.49
1413 1773 5.376854 AACCAGATGTGTGAATTTAGCAC 57.623 39.130 0.00 0.00 36.81 4.40
1414 1774 3.436704 ACCAGATGTGTGAATTTAGCACG 59.563 43.478 0.00 0.00 39.07 5.34
1415 1775 3.181507 CCAGATGTGTGAATTTAGCACGG 60.182 47.826 0.00 0.00 39.07 4.94
1416 1776 3.436704 CAGATGTGTGAATTTAGCACGGT 59.563 43.478 0.00 0.00 39.07 4.83
1417 1777 4.072131 AGATGTGTGAATTTAGCACGGTT 58.928 39.130 0.00 0.00 39.07 4.44
1418 1778 3.889196 TGTGTGAATTTAGCACGGTTC 57.111 42.857 0.00 0.00 39.07 3.62
1419 1779 2.550606 TGTGTGAATTTAGCACGGTTCC 59.449 45.455 0.00 0.00 39.07 3.62
1420 1780 2.812011 GTGTGAATTTAGCACGGTTCCT 59.188 45.455 0.00 0.00 39.07 3.36
1421 1781 3.252458 GTGTGAATTTAGCACGGTTCCTT 59.748 43.478 0.00 0.00 39.07 3.36
1422 1782 3.252215 TGTGAATTTAGCACGGTTCCTTG 59.748 43.478 0.00 0.00 39.07 3.61
1423 1783 3.500680 GTGAATTTAGCACGGTTCCTTGA 59.499 43.478 0.00 0.00 0.00 3.02
1424 1784 3.751175 TGAATTTAGCACGGTTCCTTGAG 59.249 43.478 0.00 0.00 0.00 3.02
1425 1785 2.178912 TTTAGCACGGTTCCTTGAGG 57.821 50.000 0.00 0.00 0.00 3.86
1426 1786 1.053424 TTAGCACGGTTCCTTGAGGT 58.947 50.000 0.00 0.00 36.34 3.85
1427 1787 0.606604 TAGCACGGTTCCTTGAGGTC 59.393 55.000 0.00 0.00 36.34 3.85
1428 1788 2.027625 GCACGGTTCCTTGAGGTCG 61.028 63.158 0.00 3.37 36.34 4.79
1429 1789 1.366366 CACGGTTCCTTGAGGTCGT 59.634 57.895 0.00 3.95 37.66 4.34
1430 1790 0.666577 CACGGTTCCTTGAGGTCGTC 60.667 60.000 10.81 0.00 36.19 4.20
1431 1791 1.443872 CGGTTCCTTGAGGTCGTCG 60.444 63.158 0.00 0.00 36.34 5.12
1432 1792 1.080025 GGTTCCTTGAGGTCGTCGG 60.080 63.158 0.00 0.00 36.34 4.79
1433 1793 1.530013 GGTTCCTTGAGGTCGTCGGA 61.530 60.000 0.00 0.00 36.34 4.55
1434 1794 0.531200 GTTCCTTGAGGTCGTCGGAT 59.469 55.000 0.00 0.00 36.34 4.18
1486 1846 8.829612 TGTGCAGATAATGTGACATAATGTAAG 58.170 33.333 0.00 0.00 0.00 2.34
1506 1866 4.032960 AGGGTTTGCATGATACAACAGA 57.967 40.909 0.00 0.00 0.00 3.41
1567 1928 2.976903 GCAGGGCCAGATCATCGC 60.977 66.667 6.18 0.00 0.00 4.58
1611 1972 3.662247 ACCTCCTCTACTTCAACAACG 57.338 47.619 0.00 0.00 0.00 4.10
1636 1997 4.263771 TGAGATATCAGGCGGGTATGTCTA 60.264 45.833 14.32 1.41 0.00 2.59
1638 1999 4.890581 AGATATCAGGCGGGTATGTCTATC 59.109 45.833 5.32 0.00 0.00 2.08
1865 2334 7.867445 TTCAAGAACTTTTTCATAAATCCGC 57.133 32.000 0.00 0.00 33.72 5.54
1867 2336 7.429633 TCAAGAACTTTTTCATAAATCCGCAA 58.570 30.769 0.00 0.00 33.72 4.85
2164 2634 4.988716 TGGTGGAGACCTCGCCGT 62.989 66.667 0.00 0.00 43.58 5.68
2174 2644 2.049433 CTCGCCGTTGTCGTCCTT 60.049 61.111 0.00 0.00 35.01 3.36
2202 2674 4.144703 GGACGGGAGGACGCCTTC 62.145 72.222 0.00 0.00 37.37 3.46
2210 2682 2.967615 GGACGCCTTCGCTATGCC 60.968 66.667 0.00 0.00 39.84 4.40
2225 2697 0.249398 ATGCCGTCCTAGAAAAGCGT 59.751 50.000 0.00 0.00 0.00 5.07
2226 2698 0.034337 TGCCGTCCTAGAAAAGCGTT 59.966 50.000 0.00 0.00 0.00 4.84
2228 2700 1.792006 CCGTCCTAGAAAAGCGTTGT 58.208 50.000 0.00 0.00 0.00 3.32
2241 2713 1.628846 AGCGTTGTGGGGTCTTCTAAT 59.371 47.619 0.00 0.00 0.00 1.73
2247 2719 4.286297 TGTGGGGTCTTCTAATGAGTTG 57.714 45.455 0.00 0.00 0.00 3.16
2248 2720 3.010420 GTGGGGTCTTCTAATGAGTTGC 58.990 50.000 0.00 0.00 0.00 4.17
2249 2721 2.280628 GGGGTCTTCTAATGAGTTGCG 58.719 52.381 0.00 0.00 0.00 4.85
2250 2722 2.093658 GGGGTCTTCTAATGAGTTGCGA 60.094 50.000 0.00 0.00 0.00 5.10
2252 2724 3.190874 GGTCTTCTAATGAGTTGCGAGG 58.809 50.000 0.00 0.00 0.00 4.63
2255 2727 2.961526 TCTAATGAGTTGCGAGGTCC 57.038 50.000 0.00 0.00 0.00 4.46
2258 2730 0.693049 AATGAGTTGCGAGGTCCCTT 59.307 50.000 0.00 0.00 0.00 3.95
2260 2732 1.344065 TGAGTTGCGAGGTCCCTTAA 58.656 50.000 0.00 0.00 0.00 1.85
2262 2734 2.105134 TGAGTTGCGAGGTCCCTTAAAA 59.895 45.455 0.00 0.00 0.00 1.52
2264 2736 2.882761 AGTTGCGAGGTCCCTTAAAAAC 59.117 45.455 0.00 0.00 0.00 2.43
2265 2737 2.619646 GTTGCGAGGTCCCTTAAAAACA 59.380 45.455 0.00 0.00 0.00 2.83
2277 2769 8.799367 GGTCCCTTAAAAACATAAACAGTGTAT 58.201 33.333 0.00 0.00 0.00 2.29
2286 2778 5.286221 ACATAAACAGTGTATAGGTCCCCT 58.714 41.667 0.00 0.00 37.71 4.79
2300 2792 9.565090 GTATAGGTCCCCTTAAAACGAATTTAT 57.435 33.333 0.00 0.00 33.60 1.40
2302 2794 6.486941 AGGTCCCCTTAAAACGAATTTATGA 58.513 36.000 0.00 0.00 33.60 2.15
2304 2796 7.068226 AGGTCCCCTTAAAACGAATTTATGATG 59.932 37.037 0.00 0.00 33.60 3.07
2305 2797 7.147966 GGTCCCCTTAAAACGAATTTATGATGT 60.148 37.037 0.00 0.00 33.60 3.06
2309 2801 6.964370 CCTTAAAACGAATTTATGATGTCGCA 59.036 34.615 0.00 0.00 36.99 5.10
2324 2816 1.225745 CGCAAGGCATCGAACGAAC 60.226 57.895 0.12 0.00 0.00 3.95
2325 2817 1.866237 GCAAGGCATCGAACGAACA 59.134 52.632 0.12 0.00 0.00 3.18
2326 2818 0.179215 GCAAGGCATCGAACGAACAG 60.179 55.000 0.12 0.00 0.00 3.16
2327 2819 1.428448 CAAGGCATCGAACGAACAGA 58.572 50.000 0.12 0.00 0.00 3.41
2328 2820 2.002586 CAAGGCATCGAACGAACAGAT 58.997 47.619 0.12 0.00 0.00 2.90
2329 2821 1.927895 AGGCATCGAACGAACAGATC 58.072 50.000 0.12 0.00 0.00 2.75
2331 2823 0.931005 GCATCGAACGAACAGATCCC 59.069 55.000 0.12 0.00 0.00 3.85
2338 2831 2.375173 ACGAACAGATCCCGTAAACC 57.625 50.000 0.00 0.00 34.52 3.27
2351 2844 4.006319 CCCGTAAACCCATACCGTAAAAA 58.994 43.478 0.00 0.00 0.00 1.94
2352 2845 4.142708 CCCGTAAACCCATACCGTAAAAAC 60.143 45.833 0.00 0.00 0.00 2.43
2387 2880 1.063806 CACCTCACGCTTCTTCTTCG 58.936 55.000 0.00 0.00 0.00 3.79
2394 2887 1.204941 ACGCTTCTTCTTCGCTGGTAT 59.795 47.619 0.00 0.00 0.00 2.73
2399 2892 1.275010 TCTTCTTCGCTGGTATGCACA 59.725 47.619 0.00 0.00 0.00 4.57
2424 2917 2.654877 GAACTCGAACTCCGGCCA 59.345 61.111 2.24 0.00 39.14 5.36
2431 2924 3.672295 GAACTCCGGCCAGCCAGAG 62.672 68.421 18.38 18.38 44.15 3.35
2508 3071 3.141488 CCTCCGCCTACTCGCTGT 61.141 66.667 0.00 0.00 0.00 4.40
2509 3072 2.409651 CTCCGCCTACTCGCTGTC 59.590 66.667 0.00 0.00 0.00 3.51
2510 3073 2.045242 TCCGCCTACTCGCTGTCT 60.045 61.111 0.00 0.00 0.00 3.41
2568 3132 3.007635 CCGGTTTTACAGGATCCTCAAC 58.992 50.000 12.69 12.06 35.32 3.18
2578 3142 1.610624 GGATCCTCAACAAACGGCTCA 60.611 52.381 3.84 0.00 0.00 4.26
2588 3152 1.200020 CAAACGGCTCAAATCCTCCAC 59.800 52.381 0.00 0.00 0.00 4.02
2613 3177 3.239449 TGACGGATGGGTGCTCTAATAT 58.761 45.455 0.00 0.00 0.00 1.28
2615 3179 4.219944 TGACGGATGGGTGCTCTAATATAC 59.780 45.833 0.00 0.00 0.00 1.47
2663 3229 7.391554 GGCATGCTATTTTACAGGATCTATTCA 59.608 37.037 18.92 0.00 0.00 2.57
2668 3234 6.851222 ATTTTACAGGATCTATTCAGTGCG 57.149 37.500 0.00 0.00 0.00 5.34
2709 3275 5.183228 CCTTATATGTGAAGGTTTGACCGT 58.817 41.667 0.00 0.00 44.90 4.83
2716 3282 5.823353 TGTGAAGGTTTGACCGTTTTTATC 58.177 37.500 0.00 0.00 44.90 1.75
2762 3328 4.608948 ACTATCTAAGTGGCCTATGTGC 57.391 45.455 3.32 0.00 36.93 4.57
2776 3342 7.390440 GTGGCCTATGTGCAGTTATATAATTCA 59.610 37.037 3.32 0.00 0.00 2.57
2892 3458 5.188327 ACGACATGTACATATCCTCAGTG 57.812 43.478 8.32 0.00 0.00 3.66
2913 3479 7.524717 AGTGCCTCACTGTTAATAATTTTGT 57.475 32.000 0.00 0.00 43.63 2.83
2934 3500 6.079424 TGTAGGCAAAATTTACACCTTGTC 57.921 37.500 10.76 0.00 31.79 3.18
2939 3505 5.691754 GGCAAAATTTACACCTTGTCTCTTG 59.308 40.000 0.00 0.00 0.00 3.02
2940 3506 5.691754 GCAAAATTTACACCTTGTCTCTTGG 59.308 40.000 0.00 0.00 0.00 3.61
2972 3543 8.831715 AAAATTTACACCTTGCTTAATGGAAG 57.168 30.769 0.00 0.00 42.73 3.46
2978 3549 3.652057 CTTGCTTAATGGAAGGGAGGA 57.348 47.619 0.00 0.00 39.94 3.71
2979 3550 3.968265 CTTGCTTAATGGAAGGGAGGAA 58.032 45.455 0.00 0.00 39.94 3.36
2980 3551 3.366052 TGCTTAATGGAAGGGAGGAAC 57.634 47.619 0.00 0.00 35.49 3.62
2981 3552 2.919602 TGCTTAATGGAAGGGAGGAACT 59.080 45.455 0.00 0.00 37.14 3.01
2984 3555 5.163195 TGCTTAATGGAAGGGAGGAACTATC 60.163 44.000 0.00 0.00 35.12 2.08
2988 3559 3.375699 TGGAAGGGAGGAACTATCTGAC 58.624 50.000 0.00 0.00 41.55 3.51
2998 3569 3.437049 GGAACTATCTGACTTTGCGCTTT 59.563 43.478 9.73 0.00 0.00 3.51
3008 3579 1.270550 CTTTGCGCTTTCAGGTTGGAT 59.729 47.619 9.73 0.00 0.00 3.41
3014 3585 2.092323 GCTTTCAGGTTGGATGGTACC 58.908 52.381 4.43 4.43 34.54 3.34
3096 3667 1.672030 CCATCACGCCTCAACAGCA 60.672 57.895 0.00 0.00 0.00 4.41
3163 3755 2.890311 TGGACGCCATGATTTCAAAGTT 59.110 40.909 0.00 0.00 0.00 2.66
3693 4307 2.140717 GGAAGACACAAACGTACCCAG 58.859 52.381 0.00 0.00 0.00 4.45
3752 4400 2.224305 GGGGACTCATTACATCGGGAAG 60.224 54.545 0.00 0.00 0.00 3.46
3834 4485 1.975680 TCTACCTCAACTCCAACCCAC 59.024 52.381 0.00 0.00 0.00 4.61
3937 4588 2.432628 GTCGCCGGACTTCCACAG 60.433 66.667 5.05 0.00 40.15 3.66
3994 4645 1.199558 GGTCAGAGACAGGTACACGAC 59.800 57.143 0.00 0.00 33.68 4.34
4110 4761 0.317519 CGCAAAGAACCCACCGAAAC 60.318 55.000 0.00 0.00 0.00 2.78
4436 5091 1.060163 CCGATCCCAACCCCAGGTAT 61.060 60.000 0.00 0.00 33.12 2.73
4597 5253 3.758554 GTCACAAGGTGCCATTGATACTT 59.241 43.478 6.59 0.00 32.98 2.24
4598 5254 4.941263 GTCACAAGGTGCCATTGATACTTA 59.059 41.667 6.59 0.00 32.98 2.24
4599 5255 5.414454 GTCACAAGGTGCCATTGATACTTAA 59.586 40.000 6.59 0.00 32.98 1.85
4618 5274 5.412904 ACTTAATAACTGAAACCTGAGCTGC 59.587 40.000 0.00 0.00 0.00 5.25
4621 5277 0.403271 ACTGAAACCTGAGCTGCCAT 59.597 50.000 0.00 0.00 0.00 4.40
4924 5580 0.175989 GGAGCTTCGAGTTCCCGATT 59.824 55.000 6.52 0.00 39.41 3.34
4961 5617 1.026718 GCAAGGGGAGAACACCATCG 61.027 60.000 0.00 0.00 43.15 3.84
5074 5733 1.195115 CAAGTAGTGCTGGCCTAGGA 58.805 55.000 14.75 0.00 0.00 2.94
5100 5759 1.667724 CTTGCCTCTCGGTTTGCTATG 59.332 52.381 0.00 0.00 0.00 2.23
5158 6854 3.272574 AGCAAGTGATACAGTCCATGG 57.727 47.619 4.97 4.97 0.00 3.66
5162 6858 4.941263 GCAAGTGATACAGTCCATGGTTAA 59.059 41.667 12.58 0.00 0.00 2.01
5256 8551 0.820226 TCAGCCAACCGATCTGAGAG 59.180 55.000 0.00 0.00 33.42 3.20
5271 8566 0.389166 GAGAGAGTTGTCTGGTGCGG 60.389 60.000 0.00 0.00 30.97 5.69
5309 8604 0.032515 TTGATCCCTAGCTCGTCCCA 60.033 55.000 0.00 0.00 0.00 4.37
5366 8670 2.045926 CTTGCGCCTTGCCCTACT 60.046 61.111 4.18 0.00 45.60 2.57
5556 8864 0.108804 CAGTAGTGCCGACCATCGTT 60.109 55.000 0.00 0.00 38.40 3.85
5578 8886 3.576004 CAGCTTGCCTCACTGCTC 58.424 61.111 0.00 0.00 33.03 4.26
5686 9026 3.692593 GCCATTACCCTTGTAACATCGTT 59.307 43.478 0.00 0.00 39.66 3.85
5706 9097 1.675310 TCCACCTTTGCAGCATCCG 60.675 57.895 0.00 0.00 0.00 4.18
5708 9099 3.434319 ACCTTTGCAGCATCCGCG 61.434 61.111 0.00 0.00 45.49 6.46
5771 9165 2.168621 CGTCGACTGCTTGCAACG 59.831 61.111 14.70 12.81 0.00 4.10
5789 9183 2.268076 GCTGTTTCATGGGTGCCGT 61.268 57.895 0.00 0.00 0.00 5.68
5848 9299 1.899814 TGTCTCCCGAGTTTGTAGCAT 59.100 47.619 0.00 0.00 0.00 3.79
5875 9326 1.277273 TCTCCTCATGTGGACTTGCAG 59.723 52.381 12.50 2.61 31.94 4.41
5889 9340 2.370189 ACTTGCAGTAGCTTTGAGAGGT 59.630 45.455 0.00 0.00 42.74 3.85
5896 9347 1.004440 GCTTTGAGAGGTCGCAGGT 60.004 57.895 0.00 0.00 0.00 4.00
5936 9387 2.713967 GCTTGTCGCAATGGGGCAT 61.714 57.895 5.22 0.00 38.92 4.40
5939 9390 1.314534 TTGTCGCAATGGGGCATGAG 61.315 55.000 5.22 0.00 0.00 2.90
5940 9391 1.451927 GTCGCAATGGGGCATGAGA 60.452 57.895 0.00 0.00 0.00 3.27
5957 11113 2.906389 TGAGACTGTAGGAGTTGGCAAT 59.094 45.455 1.92 0.00 33.83 3.56
5997 11153 4.746535 TGGGGAAAAAGTTTGGAAAGAC 57.253 40.909 0.00 0.00 0.00 3.01
6044 11256 0.602638 AAGCGAATGAGTGGTTGCGA 60.603 50.000 0.00 0.00 0.00 5.10
6047 11259 1.004927 GCGAATGAGTGGTTGCGATAC 60.005 52.381 0.00 0.00 0.00 2.24
6084 11296 1.747355 CGGGTCGGGCGAGTATTATAT 59.253 52.381 0.00 0.00 0.00 0.86
6085 11297 2.223433 CGGGTCGGGCGAGTATTATATC 60.223 54.545 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.126067 CGATGAGGGTGTTATTTTCAGGAT 58.874 41.667 0.00 0.00 0.00 3.24
62 63 4.379243 CCCGAGGTGCGCTTCACT 62.379 66.667 9.73 0.52 44.98 3.41
112 113 1.142531 GGGTCGGGGAATACGTCAC 59.857 63.158 0.00 0.00 0.00 3.67
142 143 5.412904 CCAGTCCTGAGAGTACAAAAATTCC 59.587 44.000 0.00 0.00 0.00 3.01
146 147 3.740115 GCCAGTCCTGAGAGTACAAAAA 58.260 45.455 0.00 0.00 0.00 1.94
157 158 1.447838 GAAATCGCGCCAGTCCTGA 60.448 57.895 0.00 0.00 0.00 3.86
280 281 0.908198 AGGTTTTGGTTTGCTTGGCA 59.092 45.000 0.00 0.00 36.47 4.92
288 289 2.115427 CACCCTTGGAGGTTTTGGTTT 58.885 47.619 0.00 0.00 38.39 3.27
328 329 1.118965 TGAGGACTGGAAGCACGGAA 61.119 55.000 0.00 0.00 37.60 4.30
369 370 1.676968 CCTCACCGGTGTTGGATCA 59.323 57.895 32.74 12.02 0.00 2.92
401 402 1.217244 GGCATGCAAAGGAAGGCTG 59.783 57.895 21.36 0.00 0.00 4.85
438 440 2.683968 TGTCGTGTAGAATTCAGCACC 58.316 47.619 19.72 11.52 0.00 5.01
468 470 2.215363 CCAATTGTTTGTTCGCAACGAC 59.785 45.455 4.43 0.00 36.74 4.34
485 487 9.312904 TCCATTTCTTTTCTTTACATCTCCAAT 57.687 29.630 0.00 0.00 0.00 3.16
551 850 0.816825 CCGGTGCATCCATCTCCTTG 60.817 60.000 0.00 0.00 35.57 3.61
627 954 5.305585 TCATGAAAAACTAGGCTCGAGTTT 58.694 37.500 15.13 9.14 46.57 2.66
778 1115 4.616835 GCTTAGGTTCCAATGACTTTGCAG 60.617 45.833 0.00 0.00 33.73 4.41
976 1315 2.510238 CTGCCGGAGCGAAAGGAG 60.510 66.667 5.05 0.00 44.31 3.69
977 1316 4.760047 GCTGCCGGAGCGAAAGGA 62.760 66.667 5.05 0.00 44.31 3.36
999 1342 2.353030 CATCGCCGTGCATGCATG 60.353 61.111 29.36 29.36 0.00 4.06
1000 1343 4.260355 GCATCGCCGTGCATGCAT 62.260 61.111 25.64 2.98 44.43 3.96
1159 1502 1.035139 AGAAAACCAACCAGCAGCTG 58.965 50.000 16.23 16.23 0.00 4.24
1160 1503 1.780503 AAGAAAACCAACCAGCAGCT 58.219 45.000 0.00 0.00 0.00 4.24
1161 1504 3.381045 GTTAAGAAAACCAACCAGCAGC 58.619 45.455 0.00 0.00 0.00 5.25
1162 1505 3.550030 CGGTTAAGAAAACCAACCAGCAG 60.550 47.826 7.62 0.00 41.52 4.24
1165 1508 4.642445 AACGGTTAAGAAAACCAACCAG 57.358 40.909 7.62 0.00 41.52 4.00
1166 1509 4.705991 AGAAACGGTTAAGAAAACCAACCA 59.294 37.500 7.62 0.00 41.52 3.67
1168 1511 5.066893 AGGAGAAACGGTTAAGAAAACCAAC 59.933 40.000 7.62 0.00 40.28 3.77
1169 1512 5.195185 AGGAGAAACGGTTAAGAAAACCAA 58.805 37.500 7.62 0.00 40.28 3.67
1193 1550 3.181506 GGATCTAAAAGTCGCAAGCAAGG 60.182 47.826 0.00 0.00 37.18 3.61
1221 1578 5.221048 CGGATTTCAAGAATGGGTGATTACC 60.221 44.000 0.00 0.00 46.76 2.85
1222 1579 5.733373 GCGGATTTCAAGAATGGGTGATTAC 60.733 44.000 0.00 0.00 0.00 1.89
1223 1580 4.338118 GCGGATTTCAAGAATGGGTGATTA 59.662 41.667 0.00 0.00 0.00 1.75
1224 1581 3.131046 GCGGATTTCAAGAATGGGTGATT 59.869 43.478 0.00 0.00 0.00 2.57
1225 1582 2.689983 GCGGATTTCAAGAATGGGTGAT 59.310 45.455 0.00 0.00 0.00 3.06
1226 1583 2.091541 GCGGATTTCAAGAATGGGTGA 58.908 47.619 0.00 0.00 0.00 4.02
1227 1584 1.202177 CGCGGATTTCAAGAATGGGTG 60.202 52.381 0.00 0.00 0.00 4.61
1228 1585 1.094785 CGCGGATTTCAAGAATGGGT 58.905 50.000 0.00 0.00 0.00 4.51
1229 1586 0.381801 CCGCGGATTTCAAGAATGGG 59.618 55.000 24.07 0.00 0.00 4.00
1230 1587 1.331756 CTCCGCGGATTTCAAGAATGG 59.668 52.381 31.19 8.41 0.00 3.16
1231 1588 1.268234 GCTCCGCGGATTTCAAGAATG 60.268 52.381 31.19 13.99 0.00 2.67
1232 1589 1.017387 GCTCCGCGGATTTCAAGAAT 58.983 50.000 31.19 0.00 0.00 2.40
1233 1590 1.024579 GGCTCCGCGGATTTCAAGAA 61.025 55.000 31.19 2.04 0.00 2.52
1234 1591 1.449601 GGCTCCGCGGATTTCAAGA 60.450 57.895 31.19 2.93 0.00 3.02
1235 1592 2.813179 CGGCTCCGCGGATTTCAAG 61.813 63.158 31.19 17.24 0.00 3.02
1236 1593 2.817834 CGGCTCCGCGGATTTCAA 60.818 61.111 31.19 4.74 0.00 2.69
1237 1594 4.830765 CCGGCTCCGCGGATTTCA 62.831 66.667 31.19 5.64 38.24 2.69
1238 1595 4.524318 TCCGGCTCCGCGGATTTC 62.524 66.667 31.19 19.97 38.24 2.17
1239 1596 4.090588 TTCCGGCTCCGCGGATTT 62.091 61.111 31.19 0.00 38.24 2.17
1240 1597 4.530857 CTTCCGGCTCCGCGGATT 62.531 66.667 31.19 0.00 38.24 3.01
1244 1601 4.735132 TTCACTTCCGGCTCCGCG 62.735 66.667 0.00 0.00 38.24 6.46
1245 1602 2.815647 CTTCACTTCCGGCTCCGC 60.816 66.667 0.00 0.00 38.24 5.54
1246 1603 1.004918 AACTTCACTTCCGGCTCCG 60.005 57.895 0.00 0.48 39.44 4.63
1247 1604 0.250338 ACAACTTCACTTCCGGCTCC 60.250 55.000 0.00 0.00 0.00 4.70
1248 1605 0.868406 CACAACTTCACTTCCGGCTC 59.132 55.000 0.00 0.00 0.00 4.70
1249 1606 0.535102 CCACAACTTCACTTCCGGCT 60.535 55.000 0.00 0.00 0.00 5.52
1250 1607 0.534203 TCCACAACTTCACTTCCGGC 60.534 55.000 0.00 0.00 0.00 6.13
1251 1608 1.961793 TTCCACAACTTCACTTCCGG 58.038 50.000 0.00 0.00 0.00 5.14
1252 1609 2.226437 CCATTCCACAACTTCACTTCCG 59.774 50.000 0.00 0.00 0.00 4.30
1253 1610 3.486383 TCCATTCCACAACTTCACTTCC 58.514 45.455 0.00 0.00 0.00 3.46
1254 1611 3.057946 GCTCCATTCCACAACTTCACTTC 60.058 47.826 0.00 0.00 0.00 3.01
1255 1612 2.887152 GCTCCATTCCACAACTTCACTT 59.113 45.455 0.00 0.00 0.00 3.16
1256 1613 2.508526 GCTCCATTCCACAACTTCACT 58.491 47.619 0.00 0.00 0.00 3.41
1257 1614 1.197721 CGCTCCATTCCACAACTTCAC 59.802 52.381 0.00 0.00 0.00 3.18
1258 1615 1.071542 TCGCTCCATTCCACAACTTCA 59.928 47.619 0.00 0.00 0.00 3.02
1259 1616 1.808411 TCGCTCCATTCCACAACTTC 58.192 50.000 0.00 0.00 0.00 3.01
1260 1617 2.496899 ATCGCTCCATTCCACAACTT 57.503 45.000 0.00 0.00 0.00 2.66
1261 1618 2.738643 CGTATCGCTCCATTCCACAACT 60.739 50.000 0.00 0.00 0.00 3.16
1262 1619 1.593006 CGTATCGCTCCATTCCACAAC 59.407 52.381 0.00 0.00 0.00 3.32
1263 1620 1.472552 CCGTATCGCTCCATTCCACAA 60.473 52.381 0.00 0.00 0.00 3.33
1264 1621 0.104120 CCGTATCGCTCCATTCCACA 59.896 55.000 0.00 0.00 0.00 4.17
1265 1622 0.387929 TCCGTATCGCTCCATTCCAC 59.612 55.000 0.00 0.00 0.00 4.02
1266 1623 1.116308 TTCCGTATCGCTCCATTCCA 58.884 50.000 0.00 0.00 0.00 3.53
1267 1624 1.202486 TGTTCCGTATCGCTCCATTCC 60.202 52.381 0.00 0.00 0.00 3.01
1268 1625 2.128035 CTGTTCCGTATCGCTCCATTC 58.872 52.381 0.00 0.00 0.00 2.67
1269 1626 1.806623 GCTGTTCCGTATCGCTCCATT 60.807 52.381 0.00 0.00 0.00 3.16
1270 1627 0.249489 GCTGTTCCGTATCGCTCCAT 60.249 55.000 0.00 0.00 0.00 3.41
1271 1628 1.141019 GCTGTTCCGTATCGCTCCA 59.859 57.895 0.00 0.00 0.00 3.86
1272 1629 1.944676 CGCTGTTCCGTATCGCTCC 60.945 63.158 0.00 0.00 0.00 4.70
1273 1630 1.201098 GACGCTGTTCCGTATCGCTC 61.201 60.000 0.00 0.00 42.24 5.03
1274 1631 1.226603 GACGCTGTTCCGTATCGCT 60.227 57.895 0.00 0.00 42.24 4.93
1275 1632 0.801067 AAGACGCTGTTCCGTATCGC 60.801 55.000 0.00 0.00 42.24 4.58
1276 1633 2.107178 GTAAGACGCTGTTCCGTATCG 58.893 52.381 0.00 0.00 42.24 2.92
1277 1634 3.106672 CAGTAAGACGCTGTTCCGTATC 58.893 50.000 0.00 0.00 42.24 2.24
1278 1635 2.734492 GCAGTAAGACGCTGTTCCGTAT 60.734 50.000 0.00 0.00 42.24 3.06
1279 1636 1.401931 GCAGTAAGACGCTGTTCCGTA 60.402 52.381 0.00 0.00 42.24 4.02
1280 1637 0.666577 GCAGTAAGACGCTGTTCCGT 60.667 55.000 0.00 0.00 45.30 4.69
1281 1638 1.352156 GGCAGTAAGACGCTGTTCCG 61.352 60.000 0.00 0.00 36.42 4.30
1282 1639 0.320421 TGGCAGTAAGACGCTGTTCC 60.320 55.000 0.00 0.00 36.42 3.62
1283 1640 1.508632 TTGGCAGTAAGACGCTGTTC 58.491 50.000 0.00 0.00 36.42 3.18
1284 1641 1.961793 TTTGGCAGTAAGACGCTGTT 58.038 45.000 0.00 0.00 36.42 3.16
1285 1642 1.961793 TTTTGGCAGTAAGACGCTGT 58.038 45.000 0.00 0.00 36.42 4.40
1351 1711 9.516314 GGAAACCAGTATGCATCTTTTTATTAC 57.484 33.333 0.19 0.00 31.97 1.89
1372 1732 3.552890 GGTTTTGATGTCTGCTGGGAAAC 60.553 47.826 0.00 0.00 0.00 2.78
1373 1733 2.627699 GGTTTTGATGTCTGCTGGGAAA 59.372 45.455 0.00 0.00 0.00 3.13
1374 1734 2.238521 GGTTTTGATGTCTGCTGGGAA 58.761 47.619 0.00 0.00 0.00 3.97
1375 1735 1.144708 TGGTTTTGATGTCTGCTGGGA 59.855 47.619 0.00 0.00 0.00 4.37
1376 1736 1.542915 CTGGTTTTGATGTCTGCTGGG 59.457 52.381 0.00 0.00 0.00 4.45
1377 1737 2.507484 TCTGGTTTTGATGTCTGCTGG 58.493 47.619 0.00 0.00 0.00 4.85
1378 1738 4.092771 CATCTGGTTTTGATGTCTGCTG 57.907 45.455 0.00 0.00 37.22 4.41
1385 1745 7.062605 GCTAAATTCACACATCTGGTTTTGATG 59.937 37.037 0.00 0.00 44.79 3.07
1386 1746 7.092716 GCTAAATTCACACATCTGGTTTTGAT 58.907 34.615 0.00 0.00 0.00 2.57
1387 1747 6.040278 TGCTAAATTCACACATCTGGTTTTGA 59.960 34.615 0.00 0.00 0.00 2.69
1388 1748 6.144402 GTGCTAAATTCACACATCTGGTTTTG 59.856 38.462 0.00 0.00 34.43 2.44
1389 1749 6.215845 GTGCTAAATTCACACATCTGGTTTT 58.784 36.000 0.00 0.00 34.43 2.43
1390 1750 5.562696 CGTGCTAAATTCACACATCTGGTTT 60.563 40.000 6.35 0.00 33.89 3.27
1391 1751 4.083324 CGTGCTAAATTCACACATCTGGTT 60.083 41.667 6.35 0.00 33.89 3.67
1392 1752 3.436704 CGTGCTAAATTCACACATCTGGT 59.563 43.478 6.35 0.00 33.89 4.00
1393 1753 3.181507 CCGTGCTAAATTCACACATCTGG 60.182 47.826 6.35 0.00 33.89 3.86
1394 1754 3.436704 ACCGTGCTAAATTCACACATCTG 59.563 43.478 6.35 0.00 33.89 2.90
1395 1755 3.674997 ACCGTGCTAAATTCACACATCT 58.325 40.909 6.35 0.00 33.89 2.90
1396 1756 4.403453 GAACCGTGCTAAATTCACACATC 58.597 43.478 6.35 0.00 33.89 3.06
1397 1757 3.190535 GGAACCGTGCTAAATTCACACAT 59.809 43.478 6.35 0.00 33.89 3.21
1398 1758 2.550606 GGAACCGTGCTAAATTCACACA 59.449 45.455 6.35 0.00 33.89 3.72
1399 1759 2.812011 AGGAACCGTGCTAAATTCACAC 59.188 45.455 0.00 0.00 34.27 3.82
1400 1760 3.134574 AGGAACCGTGCTAAATTCACA 57.865 42.857 0.00 0.00 34.27 3.58
1401 1761 3.500680 TCAAGGAACCGTGCTAAATTCAC 59.499 43.478 2.10 0.00 0.00 3.18
1402 1762 3.745799 TCAAGGAACCGTGCTAAATTCA 58.254 40.909 2.10 0.00 0.00 2.57
1403 1763 3.127030 CCTCAAGGAACCGTGCTAAATTC 59.873 47.826 2.10 0.00 37.39 2.17
1404 1764 3.081804 CCTCAAGGAACCGTGCTAAATT 58.918 45.455 2.10 0.00 37.39 1.82
1405 1765 2.039879 ACCTCAAGGAACCGTGCTAAAT 59.960 45.455 2.30 0.00 38.94 1.40
1406 1766 1.418637 ACCTCAAGGAACCGTGCTAAA 59.581 47.619 2.30 0.00 38.94 1.85
1407 1767 1.001633 GACCTCAAGGAACCGTGCTAA 59.998 52.381 2.30 0.00 38.94 3.09
1408 1768 0.606604 GACCTCAAGGAACCGTGCTA 59.393 55.000 2.30 0.00 38.94 3.49
1409 1769 1.371558 GACCTCAAGGAACCGTGCT 59.628 57.895 2.30 0.00 38.94 4.40
1410 1770 2.027625 CGACCTCAAGGAACCGTGC 61.028 63.158 2.30 0.00 38.94 5.34
1411 1771 0.666577 GACGACCTCAAGGAACCGTG 60.667 60.000 16.01 0.57 38.49 4.94
1412 1772 1.664306 GACGACCTCAAGGAACCGT 59.336 57.895 2.30 8.99 39.94 4.83
1413 1773 1.443872 CGACGACCTCAAGGAACCG 60.444 63.158 2.30 5.97 38.94 4.44
1414 1774 1.080025 CCGACGACCTCAAGGAACC 60.080 63.158 2.30 0.00 38.94 3.62
1415 1775 0.531200 ATCCGACGACCTCAAGGAAC 59.469 55.000 2.30 0.00 38.94 3.62
1416 1776 2.133281 TATCCGACGACCTCAAGGAA 57.867 50.000 2.30 0.00 38.94 3.36
1417 1777 1.954382 CATATCCGACGACCTCAAGGA 59.046 52.381 2.30 0.00 38.94 3.36
1418 1778 1.681793 ACATATCCGACGACCTCAAGG 59.318 52.381 0.00 0.00 42.17 3.61
1419 1779 2.543861 CCACATATCCGACGACCTCAAG 60.544 54.545 0.00 0.00 0.00 3.02
1420 1780 1.407618 CCACATATCCGACGACCTCAA 59.592 52.381 0.00 0.00 0.00 3.02
1421 1781 1.029681 CCACATATCCGACGACCTCA 58.970 55.000 0.00 0.00 0.00 3.86
1422 1782 1.030457 ACCACATATCCGACGACCTC 58.970 55.000 0.00 0.00 0.00 3.85
1423 1783 1.952296 GTACCACATATCCGACGACCT 59.048 52.381 0.00 0.00 0.00 3.85
1424 1784 1.952296 AGTACCACATATCCGACGACC 59.048 52.381 0.00 0.00 0.00 4.79
1425 1785 2.031333 GGAGTACCACATATCCGACGAC 60.031 54.545 0.00 0.00 35.97 4.34
1426 1786 2.158711 AGGAGTACCACATATCCGACGA 60.159 50.000 0.00 0.00 36.91 4.20
1427 1787 2.228059 AGGAGTACCACATATCCGACG 58.772 52.381 0.00 0.00 36.91 5.12
1428 1788 4.139786 TGTAGGAGTACCACATATCCGAC 58.860 47.826 3.74 3.74 37.79 4.79
1429 1789 4.442401 TGTAGGAGTACCACATATCCGA 57.558 45.455 0.00 0.00 36.91 4.55
1430 1790 5.723672 ATTGTAGGAGTACCACATATCCG 57.276 43.478 0.00 0.00 36.91 4.18
1431 1791 8.747538 AAAAATTGTAGGAGTACCACATATCC 57.252 34.615 0.00 0.00 38.94 2.59
1461 1821 8.285394 CCTTACATTATGTCACATTATCTGCAC 58.715 37.037 0.00 0.00 0.00 4.57
1486 1846 4.440525 CCATCTGTTGTATCATGCAAACCC 60.441 45.833 0.00 0.00 0.00 4.11
1506 1866 2.282180 GCCGTTGTCCACCACCAT 60.282 61.111 0.00 0.00 0.00 3.55
1538 1898 4.335647 CCCTGCGGCTTGGACACT 62.336 66.667 12.79 0.00 0.00 3.55
1567 1928 0.858961 GTCGTCGACATAACGGACGG 60.859 60.000 20.28 0.00 40.45 4.79
1611 1972 3.449018 ACATACCCGCCTGATATCTCATC 59.551 47.826 3.98 0.00 0.00 2.92
1677 2039 8.755696 TGAATTTAGCAAAATGTTCATGTACC 57.244 30.769 0.00 0.00 35.46 3.34
1839 2227 8.587111 GCGGATTTATGAAAAAGTTCTTGAATC 58.413 33.333 9.50 9.50 40.05 2.52
1840 2228 8.087750 TGCGGATTTATGAAAAAGTTCTTGAAT 58.912 29.630 0.00 0.00 32.86 2.57
1845 2233 7.169140 GTGTTTGCGGATTTATGAAAAAGTTCT 59.831 33.333 0.00 0.00 34.60 3.01
1846 2234 7.169140 AGTGTTTGCGGATTTATGAAAAAGTTC 59.831 33.333 0.00 0.00 0.00 3.01
1891 2360 8.722394 GGGTTTTGAAAACAATCTGTAAAAACA 58.278 29.630 20.87 0.00 34.66 2.83
1897 2366 6.936279 TGTTGGGTTTTGAAAACAATCTGTA 58.064 32.000 20.87 0.35 29.96 2.74
1898 2367 5.799213 TGTTGGGTTTTGAAAACAATCTGT 58.201 33.333 20.87 0.00 29.96 3.41
1900 2369 7.936496 AAATGTTGGGTTTTGAAAACAATCT 57.064 28.000 20.87 0.00 36.23 2.40
2025 2495 8.427774 CAAGTTTTCAAGAAGAAGTTCACAAAC 58.572 33.333 5.50 5.87 37.57 2.93
2164 2634 0.179234 TGTGGCAGAAAGGACGACAA 59.821 50.000 0.00 0.00 0.00 3.18
2174 2644 3.636231 CCCGTCCCTGTGGCAGAA 61.636 66.667 0.00 0.00 32.44 3.02
2202 2674 2.128035 CTTTTCTAGGACGGCATAGCG 58.872 52.381 4.72 0.00 0.00 4.26
2210 2682 1.459592 CCACAACGCTTTTCTAGGACG 59.540 52.381 0.00 0.00 0.00 4.79
2225 2697 4.651778 CAACTCATTAGAAGACCCCACAA 58.348 43.478 0.00 0.00 0.00 3.33
2226 2698 3.559171 GCAACTCATTAGAAGACCCCACA 60.559 47.826 0.00 0.00 0.00 4.17
2228 2700 2.354704 CGCAACTCATTAGAAGACCCCA 60.355 50.000 0.00 0.00 0.00 4.96
2241 2713 1.344065 TTAAGGGACCTCGCAACTCA 58.656 50.000 0.00 0.00 0.00 3.41
2247 2719 5.048573 TGTTTATGTTTTTAAGGGACCTCGC 60.049 40.000 0.00 0.00 0.00 5.03
2248 2720 6.206048 ACTGTTTATGTTTTTAAGGGACCTCG 59.794 38.462 0.00 0.00 0.00 4.63
2249 2721 7.013942 ACACTGTTTATGTTTTTAAGGGACCTC 59.986 37.037 0.00 0.00 0.00 3.85
2250 2722 6.837048 ACACTGTTTATGTTTTTAAGGGACCT 59.163 34.615 0.00 0.00 0.00 3.85
2258 2730 9.452287 GGGACCTATACACTGTTTATGTTTTTA 57.548 33.333 0.00 0.00 0.00 1.52
2260 2732 7.933215 GGGACCTATACACTGTTTATGTTTT 57.067 36.000 0.00 0.00 0.00 2.43
2286 2778 7.483375 CCTTGCGACATCATAAATTCGTTTTAA 59.517 33.333 0.00 0.00 33.60 1.52
2300 2792 0.390998 TTCGATGCCTTGCGACATCA 60.391 50.000 5.62 0.00 42.28 3.07
2302 2794 1.695893 CGTTCGATGCCTTGCGACAT 61.696 55.000 0.00 0.00 36.11 3.06
2304 2796 1.623081 TTCGTTCGATGCCTTGCGAC 61.623 55.000 0.00 0.00 36.11 5.19
2305 2797 1.373622 TTCGTTCGATGCCTTGCGA 60.374 52.632 0.00 0.00 34.32 5.10
2309 2801 2.271800 GATCTGTTCGTTCGATGCCTT 58.728 47.619 0.00 0.00 0.00 4.35
2318 2810 2.613725 GGGTTTACGGGATCTGTTCGTT 60.614 50.000 8.58 0.00 38.19 3.85
2324 2816 2.547218 CGGTATGGGTTTACGGGATCTG 60.547 54.545 0.00 0.00 0.00 2.90
2325 2817 1.690352 CGGTATGGGTTTACGGGATCT 59.310 52.381 0.00 0.00 0.00 2.75
2326 2818 1.413812 ACGGTATGGGTTTACGGGATC 59.586 52.381 0.00 0.00 0.00 3.36
2327 2819 1.499368 ACGGTATGGGTTTACGGGAT 58.501 50.000 0.00 0.00 0.00 3.85
2328 2820 2.151502 TACGGTATGGGTTTACGGGA 57.848 50.000 0.00 0.00 0.00 5.14
2329 2821 2.977772 TTACGGTATGGGTTTACGGG 57.022 50.000 0.00 0.00 0.00 5.28
2331 2823 5.861222 AGTTTTTACGGTATGGGTTTACG 57.139 39.130 0.00 0.00 0.00 3.18
2387 2880 0.734889 GTCCATGTGTGCATACCAGC 59.265 55.000 11.39 0.00 33.30 4.85
2394 2887 0.943835 CGAGTTCGTCCATGTGTGCA 60.944 55.000 0.00 0.00 34.11 4.57
2399 2892 1.067776 GGAGTTCGAGTTCGTCCATGT 60.068 52.381 1.07 0.00 40.80 3.21
2539 3103 1.223187 CTGTAAAACCGGTCAACGCT 58.777 50.000 8.04 0.00 42.52 5.07
2557 3121 0.693049 AGCCGTTTGTTGAGGATCCT 59.307 50.000 16.13 16.13 0.00 3.24
2568 3132 1.200020 GTGGAGGATTTGAGCCGTTTG 59.800 52.381 0.00 0.00 0.00 2.93
2578 3142 4.505566 CCATCCGTCATATGTGGAGGATTT 60.506 45.833 23.55 7.92 38.80 2.17
2588 3152 1.345741 AGAGCACCCATCCGTCATATG 59.654 52.381 0.00 0.00 0.00 1.78
2632 3196 3.880490 CCTGTAAAATAGCATGCCCGTTA 59.120 43.478 15.66 5.38 0.00 3.18
2633 3197 2.687935 CCTGTAAAATAGCATGCCCGTT 59.312 45.455 15.66 6.41 0.00 4.44
2634 3198 2.092646 TCCTGTAAAATAGCATGCCCGT 60.093 45.455 15.66 0.00 0.00 5.28
2635 3199 2.571212 TCCTGTAAAATAGCATGCCCG 58.429 47.619 15.66 0.00 0.00 6.13
2636 3200 4.401925 AGATCCTGTAAAATAGCATGCCC 58.598 43.478 15.66 0.00 0.00 5.36
2639 3203 9.499479 ACTGAATAGATCCTGTAAAATAGCATG 57.501 33.333 0.00 0.00 0.00 4.06
2675 3241 8.731275 CCTTCACATATAAGGTACATGTTTGA 57.269 34.615 2.30 0.00 38.98 2.69
2688 3254 7.513371 AAAACGGTCAAACCTTCACATATAA 57.487 32.000 0.00 0.00 35.66 0.98
2691 3257 5.838531 AAAAACGGTCAAACCTTCACATA 57.161 34.783 0.00 0.00 35.66 2.29
2709 3275 5.928839 GCATCTCTAGCAGATCCGATAAAAA 59.071 40.000 0.00 0.00 40.20 1.94
2716 3282 2.634982 GAGCATCTCTAGCAGATCCG 57.365 55.000 0.00 0.00 40.20 4.18
2892 3458 6.972901 GCCTACAAAATTATTAACAGTGAGGC 59.027 38.462 0.00 0.00 36.75 4.70
2913 3479 6.303839 AGAGACAAGGTGTAAATTTTGCCTA 58.696 36.000 0.00 0.00 0.00 3.93
2934 3500 8.567285 AGGTGTAAATTTTATCTCACCAAGAG 57.433 34.615 20.74 0.00 45.06 2.85
2939 3505 7.158099 AGCAAGGTGTAAATTTTATCTCACC 57.842 36.000 14.92 14.92 43.61 4.02
2946 3512 9.921637 CTTCCATTAAGCAAGGTGTAAATTTTA 57.078 29.630 0.00 0.00 0.00 1.52
2952 3523 4.043561 TCCCTTCCATTAAGCAAGGTGTAA 59.956 41.667 8.38 0.00 32.87 2.41
2972 3543 3.536570 GCAAAGTCAGATAGTTCCTCCC 58.463 50.000 0.00 0.00 0.00 4.30
2973 3544 3.190874 CGCAAAGTCAGATAGTTCCTCC 58.809 50.000 0.00 0.00 0.00 4.30
2974 3545 2.605366 GCGCAAAGTCAGATAGTTCCTC 59.395 50.000 0.30 0.00 0.00 3.71
2975 3546 2.234908 AGCGCAAAGTCAGATAGTTCCT 59.765 45.455 11.47 0.00 0.00 3.36
2976 3547 2.622436 AGCGCAAAGTCAGATAGTTCC 58.378 47.619 11.47 0.00 0.00 3.62
2977 3548 4.152402 TGAAAGCGCAAAGTCAGATAGTTC 59.848 41.667 11.47 0.00 0.00 3.01
2978 3549 4.065088 TGAAAGCGCAAAGTCAGATAGTT 58.935 39.130 11.47 0.00 0.00 2.24
2979 3550 3.664107 TGAAAGCGCAAAGTCAGATAGT 58.336 40.909 11.47 0.00 0.00 2.12
2980 3551 3.063180 CCTGAAAGCGCAAAGTCAGATAG 59.937 47.826 23.09 9.33 39.94 2.08
2981 3552 3.002791 CCTGAAAGCGCAAAGTCAGATA 58.997 45.455 23.09 0.00 39.94 1.98
2984 3555 0.947244 ACCTGAAAGCGCAAAGTCAG 59.053 50.000 11.47 15.56 37.77 3.51
2988 3559 0.667993 TCCAACCTGAAAGCGCAAAG 59.332 50.000 11.47 0.34 0.00 2.77
2998 3569 1.191535 CTCGGTACCATCCAACCTGA 58.808 55.000 13.54 0.00 33.34 3.86
3008 3579 1.189524 CCACCCTGAACTCGGTACCA 61.190 60.000 13.54 0.00 0.00 3.25
3014 3585 1.471676 GCAGATACCACCCTGAACTCG 60.472 57.143 0.00 0.00 32.37 4.18
3037 3608 2.125350 GCTCCACTTGCTCCTCGG 60.125 66.667 0.00 0.00 0.00 4.63
3059 3630 2.901192 TGGGTCGTAGGTTCTCATGAAA 59.099 45.455 0.00 0.00 33.52 2.69
3096 3667 3.823330 GTCGACGGTGAGCGGGAT 61.823 66.667 9.43 0.00 0.00 3.85
3148 3740 8.033038 ACATCAAGATCAACTTTGAAATCATGG 58.967 33.333 0.00 0.00 41.13 3.66
3752 4400 1.272490 TCGATCTTCGCCACCATATCC 59.728 52.381 0.00 0.00 40.21 2.59
3834 4485 4.479993 CTGGAAGCCTCCCCGCTG 62.480 72.222 0.00 0.00 41.64 5.18
4110 4761 7.646314 AGCATATCCAAAAATTTCTCATCGAG 58.354 34.615 0.00 0.00 0.00 4.04
4418 5073 0.396811 GATACCTGGGGTTGGGATCG 59.603 60.000 0.00 0.00 35.46 3.69
4436 5091 0.109551 CGACGAAGAGCTTGCTGAGA 60.110 55.000 0.00 0.00 0.00 3.27
4597 5253 4.261801 GGCAGCTCAGGTTTCAGTTATTA 58.738 43.478 0.00 0.00 0.00 0.98
4598 5254 3.084786 GGCAGCTCAGGTTTCAGTTATT 58.915 45.455 0.00 0.00 0.00 1.40
4599 5255 2.040278 TGGCAGCTCAGGTTTCAGTTAT 59.960 45.455 0.00 0.00 0.00 1.89
4861 5517 3.898640 GCGATCGCGTTGTCGTCC 61.899 66.667 26.12 11.03 39.87 4.79
4939 5595 1.603739 GGTGTTCTCCCCTTGCACC 60.604 63.158 0.00 0.00 42.03 5.01
5068 5727 3.873952 CGAGAGGCAAGATTTTTCCTAGG 59.126 47.826 0.82 0.82 29.50 3.02
5100 5759 2.033194 GGTAGCACGACAAGCCCAC 61.033 63.158 0.00 0.00 0.00 4.61
5256 8551 2.358737 CCCCGCACCAGACAACTC 60.359 66.667 0.00 0.00 0.00 3.01
5271 8566 0.394352 ATCCAATGGCTCGTGTTCCC 60.394 55.000 0.00 0.00 0.00 3.97
5309 8604 2.423898 CGTGGTATGCGAGGGAGGT 61.424 63.158 0.00 0.00 0.00 3.85
5366 8670 1.295423 GGAGTTGTAGGGCGCAAGA 59.705 57.895 10.83 0.00 43.02 3.02
5556 8864 2.981909 GTGAGGCAAGCTGCTGCA 60.982 61.111 18.42 0.88 44.28 4.41
5578 8886 2.434884 AGGACGCATGTTGCTCCG 60.435 61.111 0.00 0.00 41.96 4.63
5686 9026 0.895100 GGATGCTGCAAAGGTGGACA 60.895 55.000 6.36 0.00 0.00 4.02
5706 9097 3.542742 GCTACAACCGTCGAGCGC 61.543 66.667 0.00 0.00 39.71 5.92
5708 9099 0.370273 CAATGCTACAACCGTCGAGC 59.630 55.000 0.00 0.00 35.43 5.03
5712 9103 2.671396 ACGAATCAATGCTACAACCGTC 59.329 45.455 0.00 0.00 0.00 4.79
5716 9107 2.477863 GCCCACGAATCAATGCTACAAC 60.478 50.000 0.00 0.00 0.00 3.32
5771 9165 2.200170 GACGGCACCCATGAAACAGC 62.200 60.000 0.00 0.00 0.00 4.40
5848 9299 2.688446 GTCCACATGAGGAGACGATGTA 59.312 50.000 12.63 0.00 38.64 2.29
5875 9326 1.634702 CTGCGACCTCTCAAAGCTAC 58.365 55.000 0.00 0.00 0.00 3.58
5907 9358 1.084370 GCGACAAGCCGACTAATGCT 61.084 55.000 0.00 0.00 40.81 3.79
5936 9387 2.009681 TGCCAACTCCTACAGTCTCA 57.990 50.000 0.00 0.00 32.30 3.27
5939 9390 3.198872 GCTATTGCCAACTCCTACAGTC 58.801 50.000 0.00 0.00 32.30 3.51
5940 9391 2.418746 CGCTATTGCCAACTCCTACAGT 60.419 50.000 0.00 0.00 33.98 3.55
5973 11129 6.267699 AGTCTTTCCAAACTTTTTCCCCATAG 59.732 38.462 0.00 0.00 0.00 2.23
5975 11131 4.968719 AGTCTTTCCAAACTTTTTCCCCAT 59.031 37.500 0.00 0.00 0.00 4.00
6044 11256 5.082425 CCCGTAGTTACCCTTATCCTGTAT 58.918 45.833 0.00 0.00 0.00 2.29
6047 11259 3.303049 ACCCGTAGTTACCCTTATCCTG 58.697 50.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.