Multiple sequence alignment - TraesCS6A01G055100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G055100 chr6A 100.000 2675 0 0 1 2675 28642761 28645435 0.000000e+00 4940.0
1 TraesCS6A01G055100 chrUn 93.443 793 47 3 1001 1792 103768858 103768070 0.000000e+00 1171.0
2 TraesCS6A01G055100 chrUn 87.558 643 71 3 1114 1750 103726376 103725737 0.000000e+00 736.0
3 TraesCS6A01G055100 chrUn 95.377 411 17 2 2247 2656 103689536 103689127 0.000000e+00 652.0
4 TraesCS6A01G055100 chrUn 92.793 444 23 5 1768 2210 103689968 103689533 3.760000e-178 634.0
5 TraesCS6A01G055100 chrUn 91.803 366 19 7 629 983 103769283 103768918 1.430000e-137 499.0
6 TraesCS6A01G055100 chrUn 86.425 221 22 7 286 498 103769502 103769282 4.450000e-58 235.0
7 TraesCS6A01G055100 chr6B 92.569 471 31 2 1389 1859 55597026 55596560 0.000000e+00 673.0
8 TraesCS6A01G055100 chr6B 91.150 113 10 0 498 610 289047820 289047708 1.280000e-33 154.0
9 TraesCS6A01G055100 chr6B 93.258 89 5 1 72 159 55611441 55611353 2.160000e-26 130.0
10 TraesCS6A01G055100 chr3D 85.445 584 69 11 1105 1684 44967103 44967674 6.380000e-166 593.0
11 TraesCS6A01G055100 chr3D 87.500 112 10 1 499 610 543773068 543772961 2.800000e-25 126.0
12 TraesCS6A01G055100 chr1A 94.175 103 6 0 508 610 85860515 85860413 9.910000e-35 158.0
13 TraesCS6A01G055100 chr1A 87.879 132 16 0 500 631 38472002 38471871 3.570000e-34 156.0
14 TraesCS6A01G055100 chr1A 90.265 113 11 0 498 610 438341211 438341323 5.970000e-32 148.0
15 TraesCS6A01G055100 chr3A 90.991 111 10 0 500 610 678053676 678053566 1.660000e-32 150.0
16 TraesCS6A01G055100 chr2A 90.991 111 10 0 500 610 48402672 48402782 1.660000e-32 150.0
17 TraesCS6A01G055100 chr3B 89.091 110 11 1 502 610 585923183 585923074 4.650000e-28 135.0
18 TraesCS6A01G055100 chr3B 86.076 79 5 5 3 77 802311957 802312033 2.210000e-11 80.5
19 TraesCS6A01G055100 chr5A 96.721 61 2 0 550 610 229514682 229514742 4.710000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G055100 chr6A 28642761 28645435 2674 False 4940 4940 100.000 1 2675 1 chr6A.!!$F1 2674
1 TraesCS6A01G055100 chrUn 103725737 103726376 639 True 736 736 87.558 1114 1750 1 chrUn.!!$R1 636
2 TraesCS6A01G055100 chrUn 103689127 103689968 841 True 643 652 94.085 1768 2656 2 chrUn.!!$R2 888
3 TraesCS6A01G055100 chrUn 103768070 103769502 1432 True 635 1171 90.557 286 1792 3 chrUn.!!$R3 1506
4 TraesCS6A01G055100 chr3D 44967103 44967674 571 False 593 593 85.445 1105 1684 1 chr3D.!!$F1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.104120 CCATACAGACGGCGGATCAA 59.896 55.0 13.24 0.0 0.00 2.57 F
571 579 0.179073 TCAGGAAATAGCTGCTCCGC 60.179 55.0 4.91 0.0 34.22 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1668 1736 0.108662 TCGAGCATGCACGTCAGAAT 60.109 50.0 31.44 3.61 0.0 2.40 R
1862 1936 0.679505 TGGACTAGTGGCGCATATCC 59.320 55.0 10.83 7.57 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.970711 CATGTATTGAGGATCTTCTGCCT 58.029 43.478 6.38 0.00 37.18 4.75
27 28 1.686355 GAGGATCTTCTGCCTCTCGA 58.314 55.000 0.00 0.00 45.72 4.04
28 29 2.238521 GAGGATCTTCTGCCTCTCGAT 58.761 52.381 0.00 0.00 45.72 3.59
29 30 2.627699 GAGGATCTTCTGCCTCTCGATT 59.372 50.000 0.00 0.00 45.72 3.34
30 31 2.364970 AGGATCTTCTGCCTCTCGATTG 59.635 50.000 0.00 0.00 0.00 2.67
31 32 2.102252 GGATCTTCTGCCTCTCGATTGT 59.898 50.000 0.00 0.00 0.00 2.71
32 33 3.319405 GGATCTTCTGCCTCTCGATTGTA 59.681 47.826 0.00 0.00 0.00 2.41
33 34 4.202161 GGATCTTCTGCCTCTCGATTGTAA 60.202 45.833 0.00 0.00 0.00 2.41
34 35 4.111375 TCTTCTGCCTCTCGATTGTAAC 57.889 45.455 0.00 0.00 0.00 2.50
35 36 2.961526 TCTGCCTCTCGATTGTAACC 57.038 50.000 0.00 0.00 0.00 2.85
36 37 1.480954 TCTGCCTCTCGATTGTAACCC 59.519 52.381 0.00 0.00 0.00 4.11
37 38 1.482593 CTGCCTCTCGATTGTAACCCT 59.517 52.381 0.00 0.00 0.00 4.34
38 39 2.693591 CTGCCTCTCGATTGTAACCCTA 59.306 50.000 0.00 0.00 0.00 3.53
39 40 3.305720 TGCCTCTCGATTGTAACCCTAT 58.694 45.455 0.00 0.00 0.00 2.57
40 41 3.709653 TGCCTCTCGATTGTAACCCTATT 59.290 43.478 0.00 0.00 0.00 1.73
41 42 4.897076 TGCCTCTCGATTGTAACCCTATTA 59.103 41.667 0.00 0.00 0.00 0.98
42 43 5.542635 TGCCTCTCGATTGTAACCCTATTAT 59.457 40.000 0.00 0.00 0.00 1.28
43 44 6.042781 TGCCTCTCGATTGTAACCCTATTATT 59.957 38.462 0.00 0.00 0.00 1.40
44 45 7.233962 TGCCTCTCGATTGTAACCCTATTATTA 59.766 37.037 0.00 0.00 0.00 0.98
45 46 7.760340 GCCTCTCGATTGTAACCCTATTATTAG 59.240 40.741 0.00 0.00 0.00 1.73
46 47 9.021807 CCTCTCGATTGTAACCCTATTATTAGA 57.978 37.037 0.00 0.00 0.00 2.10
104 105 7.919690 ACACTTACATTGTCAATGATAATCGG 58.080 34.615 28.28 14.54 41.46 4.18
105 106 7.768582 ACACTTACATTGTCAATGATAATCGGA 59.231 33.333 28.28 7.01 41.46 4.55
106 107 8.611757 CACTTACATTGTCAATGATAATCGGAA 58.388 33.333 28.28 3.82 41.46 4.30
107 108 8.830580 ACTTACATTGTCAATGATAATCGGAAG 58.169 33.333 28.28 14.25 41.46 3.46
108 109 8.956533 TTACATTGTCAATGATAATCGGAAGA 57.043 30.769 28.28 1.75 42.77 2.87
109 110 7.864108 ACATTGTCAATGATAATCGGAAGAA 57.136 32.000 28.28 0.00 42.17 2.52
110 111 7.923888 ACATTGTCAATGATAATCGGAAGAAG 58.076 34.615 28.28 0.45 42.17 2.85
111 112 7.770433 ACATTGTCAATGATAATCGGAAGAAGA 59.230 33.333 28.28 0.00 42.17 2.87
112 113 8.615211 CATTGTCAATGATAATCGGAAGAAGAA 58.385 33.333 19.06 0.00 42.17 2.52
124 125 5.548406 TCGGAAGAAGAAAACTAAGAAGGG 58.452 41.667 0.00 0.00 37.03 3.95
125 126 4.695928 CGGAAGAAGAAAACTAAGAAGGGG 59.304 45.833 0.00 0.00 0.00 4.79
126 127 5.632118 GGAAGAAGAAAACTAAGAAGGGGT 58.368 41.667 0.00 0.00 0.00 4.95
127 128 6.069331 GGAAGAAGAAAACTAAGAAGGGGTT 58.931 40.000 0.00 0.00 0.00 4.11
128 129 6.016192 GGAAGAAGAAAACTAAGAAGGGGTTG 60.016 42.308 0.00 0.00 0.00 3.77
129 130 6.014771 AGAAGAAAACTAAGAAGGGGTTGT 57.985 37.500 0.00 0.00 0.00 3.32
130 131 6.062749 AGAAGAAAACTAAGAAGGGGTTGTC 58.937 40.000 0.00 0.00 0.00 3.18
131 132 4.726583 AGAAAACTAAGAAGGGGTTGTCC 58.273 43.478 0.00 0.00 30.05 4.02
132 133 4.167307 AGAAAACTAAGAAGGGGTTGTCCA 59.833 41.667 0.00 0.00 37.22 4.02
133 134 3.790089 AACTAAGAAGGGGTTGTCCAG 57.210 47.619 0.00 0.00 37.22 3.86
134 135 1.351350 ACTAAGAAGGGGTTGTCCAGC 59.649 52.381 0.00 0.00 37.22 4.85
135 136 0.696501 TAAGAAGGGGTTGTCCAGCC 59.303 55.000 0.00 0.00 43.15 4.85
136 137 1.360393 AAGAAGGGGTTGTCCAGCCA 61.360 55.000 2.51 0.00 46.10 4.75
137 138 1.142688 AGAAGGGGTTGTCCAGCCAT 61.143 55.000 2.51 0.00 46.10 4.40
138 139 0.623723 GAAGGGGTTGTCCAGCCATA 59.376 55.000 2.51 0.00 46.10 2.74
139 140 0.331616 AAGGGGTTGTCCAGCCATAC 59.668 55.000 2.51 0.00 46.10 2.39
140 141 0.844661 AGGGGTTGTCCAGCCATACA 60.845 55.000 2.51 0.00 46.10 2.29
141 142 0.394352 GGGGTTGTCCAGCCATACAG 60.394 60.000 2.51 0.00 46.10 2.74
142 143 0.618458 GGGTTGTCCAGCCATACAGA 59.382 55.000 2.51 0.00 43.39 3.41
143 144 1.679032 GGGTTGTCCAGCCATACAGAC 60.679 57.143 2.51 0.00 43.39 3.51
144 145 1.359848 GTTGTCCAGCCATACAGACG 58.640 55.000 0.00 0.00 31.75 4.18
145 146 0.249120 TTGTCCAGCCATACAGACGG 59.751 55.000 0.00 0.00 31.75 4.79
150 151 2.421739 GCCATACAGACGGCGGAT 59.578 61.111 13.24 0.00 38.82 4.18
151 152 1.664965 GCCATACAGACGGCGGATC 60.665 63.158 13.24 0.00 38.82 3.36
152 153 1.739667 CCATACAGACGGCGGATCA 59.260 57.895 13.24 0.00 0.00 2.92
153 154 0.104120 CCATACAGACGGCGGATCAA 59.896 55.000 13.24 0.00 0.00 2.57
154 155 1.209128 CATACAGACGGCGGATCAAC 58.791 55.000 13.24 0.00 0.00 3.18
155 156 1.112113 ATACAGACGGCGGATCAACT 58.888 50.000 13.24 0.00 0.00 3.16
156 157 0.454600 TACAGACGGCGGATCAACTC 59.545 55.000 13.24 0.00 0.00 3.01
157 158 1.251527 ACAGACGGCGGATCAACTCT 61.252 55.000 13.24 0.00 0.00 3.24
158 159 0.526524 CAGACGGCGGATCAACTCTC 60.527 60.000 13.24 0.00 0.00 3.20
159 160 1.586564 GACGGCGGATCAACTCTCG 60.587 63.158 13.24 0.00 0.00 4.04
160 161 2.956964 CGGCGGATCAACTCTCGC 60.957 66.667 0.00 3.55 40.57 5.03
162 163 2.496817 GCGGATCAACTCTCGCCT 59.503 61.111 0.00 0.00 37.50 5.52
163 164 1.880340 GCGGATCAACTCTCGCCTG 60.880 63.158 0.00 0.00 37.50 4.85
164 165 1.809869 CGGATCAACTCTCGCCTGA 59.190 57.895 0.00 0.00 0.00 3.86
165 166 0.526524 CGGATCAACTCTCGCCTGAC 60.527 60.000 0.00 0.00 0.00 3.51
166 167 0.820871 GGATCAACTCTCGCCTGACT 59.179 55.000 0.00 0.00 0.00 3.41
167 168 2.025155 GGATCAACTCTCGCCTGACTA 58.975 52.381 0.00 0.00 0.00 2.59
168 169 2.034053 GGATCAACTCTCGCCTGACTAG 59.966 54.545 0.00 0.00 0.00 2.57
169 170 0.811915 TCAACTCTCGCCTGACTAGC 59.188 55.000 0.00 0.00 0.00 3.42
170 171 0.814457 CAACTCTCGCCTGACTAGCT 59.186 55.000 0.00 0.00 0.00 3.32
171 172 2.017782 CAACTCTCGCCTGACTAGCTA 58.982 52.381 0.00 0.00 0.00 3.32
172 173 1.670791 ACTCTCGCCTGACTAGCTAC 58.329 55.000 0.00 0.00 0.00 3.58
173 174 1.065345 ACTCTCGCCTGACTAGCTACA 60.065 52.381 0.00 0.00 0.00 2.74
174 175 2.017782 CTCTCGCCTGACTAGCTACAA 58.982 52.381 0.00 0.00 0.00 2.41
175 176 2.423892 CTCTCGCCTGACTAGCTACAAA 59.576 50.000 0.00 0.00 0.00 2.83
176 177 2.823747 TCTCGCCTGACTAGCTACAAAA 59.176 45.455 0.00 0.00 0.00 2.44
177 178 3.257375 TCTCGCCTGACTAGCTACAAAAA 59.743 43.478 0.00 0.00 0.00 1.94
198 199 7.483580 AAAAATAAATAAATGGGTCCGTGGA 57.516 32.000 0.00 0.00 0.00 4.02
199 200 6.459670 AAATAAATAAATGGGTCCGTGGAC 57.540 37.500 10.65 10.65 43.87 4.02
211 212 2.849081 CGTGGACCGGCAAATTAGT 58.151 52.632 0.00 0.00 0.00 2.24
212 213 0.446222 CGTGGACCGGCAAATTAGTG 59.554 55.000 0.00 0.00 0.00 2.74
213 214 1.816074 GTGGACCGGCAAATTAGTGA 58.184 50.000 0.00 0.00 0.00 3.41
214 215 1.737793 GTGGACCGGCAAATTAGTGAG 59.262 52.381 0.00 0.00 0.00 3.51
215 216 0.733150 GGACCGGCAAATTAGTGAGC 59.267 55.000 0.00 0.00 0.00 4.26
216 217 1.679032 GGACCGGCAAATTAGTGAGCT 60.679 52.381 0.00 0.00 0.00 4.09
217 218 2.084546 GACCGGCAAATTAGTGAGCTT 58.915 47.619 0.00 0.00 0.00 3.74
218 219 2.488153 GACCGGCAAATTAGTGAGCTTT 59.512 45.455 0.00 0.00 0.00 3.51
219 220 3.681593 ACCGGCAAATTAGTGAGCTTTA 58.318 40.909 0.00 0.00 0.00 1.85
220 221 4.270008 ACCGGCAAATTAGTGAGCTTTAT 58.730 39.130 0.00 0.00 0.00 1.40
221 222 4.705023 ACCGGCAAATTAGTGAGCTTTATT 59.295 37.500 0.00 0.00 0.00 1.40
222 223 5.185056 ACCGGCAAATTAGTGAGCTTTATTT 59.815 36.000 0.00 0.00 0.00 1.40
223 224 6.099341 CCGGCAAATTAGTGAGCTTTATTTT 58.901 36.000 0.00 0.00 0.00 1.82
224 225 7.094118 ACCGGCAAATTAGTGAGCTTTATTTTA 60.094 33.333 0.00 0.00 0.00 1.52
225 226 7.920682 CCGGCAAATTAGTGAGCTTTATTTTAT 59.079 33.333 0.00 0.00 0.00 1.40
226 227 9.301153 CGGCAAATTAGTGAGCTTTATTTTATT 57.699 29.630 0.00 0.00 0.00 1.40
257 258 7.555639 TTTTTACGTTTGTCAGTTTTGTCAG 57.444 32.000 0.00 0.00 0.00 3.51
258 259 5.866335 TTACGTTTGTCAGTTTTGTCAGT 57.134 34.783 0.00 0.00 0.00 3.41
259 260 4.759516 ACGTTTGTCAGTTTTGTCAGTT 57.240 36.364 0.00 0.00 0.00 3.16
260 261 5.116069 ACGTTTGTCAGTTTTGTCAGTTT 57.884 34.783 0.00 0.00 0.00 2.66
261 262 5.525199 ACGTTTGTCAGTTTTGTCAGTTTT 58.475 33.333 0.00 0.00 0.00 2.43
262 263 6.670233 ACGTTTGTCAGTTTTGTCAGTTTTA 58.330 32.000 0.00 0.00 0.00 1.52
263 264 7.140048 ACGTTTGTCAGTTTTGTCAGTTTTAA 58.860 30.769 0.00 0.00 0.00 1.52
264 265 7.648510 ACGTTTGTCAGTTTTGTCAGTTTTAAA 59.351 29.630 0.00 0.00 0.00 1.52
265 266 7.942538 CGTTTGTCAGTTTTGTCAGTTTTAAAC 59.057 33.333 0.00 0.00 0.00 2.01
266 267 8.756864 GTTTGTCAGTTTTGTCAGTTTTAAACA 58.243 29.630 10.60 0.00 33.94 2.83
267 268 7.861176 TGTCAGTTTTGTCAGTTTTAAACAC 57.139 32.000 10.60 1.29 33.94 3.32
268 269 7.426410 TGTCAGTTTTGTCAGTTTTAAACACA 58.574 30.769 10.60 3.94 33.94 3.72
269 270 7.921214 TGTCAGTTTTGTCAGTTTTAAACACAA 59.079 29.630 10.60 9.62 33.94 3.33
270 271 8.921670 GTCAGTTTTGTCAGTTTTAAACACAAT 58.078 29.630 10.60 0.00 33.94 2.71
278 279 9.171701 TGTCAGTTTTAAACACAATATAAACGC 57.828 29.630 10.60 0.00 32.38 4.84
279 280 9.171701 GTCAGTTTTAAACACAATATAAACGCA 57.828 29.630 10.60 0.00 32.38 5.24
280 281 9.731819 TCAGTTTTAAACACAATATAAACGCAA 57.268 25.926 10.60 0.00 32.38 4.85
299 300 0.808125 AGTGCGTCAGTTGTTGCAAA 59.192 45.000 0.00 0.00 39.34 3.68
301 302 1.989165 GTGCGTCAGTTGTTGCAAAAA 59.011 42.857 0.00 0.00 39.34 1.94
333 335 4.246458 AGTAGCTGGACATCGAGTTTTTC 58.754 43.478 0.00 0.00 0.00 2.29
338 341 4.912187 GCTGGACATCGAGTTTTTCTTTTC 59.088 41.667 0.00 0.00 0.00 2.29
341 344 5.820423 TGGACATCGAGTTTTTCTTTTCTGA 59.180 36.000 0.00 0.00 0.00 3.27
375 378 3.982829 GGAGTTTTGTCTCCCCGC 58.017 61.111 1.70 0.00 45.84 6.13
377 380 0.955919 GGAGTTTTGTCTCCCCGCTG 60.956 60.000 1.70 0.00 45.84 5.18
378 381 0.250338 GAGTTTTGTCTCCCCGCTGT 60.250 55.000 0.00 0.00 0.00 4.40
379 382 0.535102 AGTTTTGTCTCCCCGCTGTG 60.535 55.000 0.00 0.00 0.00 3.66
381 384 0.181587 TTTTGTCTCCCCGCTGTGAA 59.818 50.000 0.00 0.00 0.00 3.18
382 385 0.534203 TTTGTCTCCCCGCTGTGAAC 60.534 55.000 0.00 0.00 0.00 3.18
383 386 1.691195 TTGTCTCCCCGCTGTGAACA 61.691 55.000 0.00 0.00 0.00 3.18
384 387 1.374758 GTCTCCCCGCTGTGAACAG 60.375 63.158 6.08 6.08 46.40 3.16
385 388 1.837051 TCTCCCCGCTGTGAACAGT 60.837 57.895 11.87 0.00 45.45 3.55
386 389 0.541063 TCTCCCCGCTGTGAACAGTA 60.541 55.000 11.87 0.00 45.45 2.74
389 392 2.167693 CTCCCCGCTGTGAACAGTAATA 59.832 50.000 11.87 0.00 45.45 0.98
393 401 4.000988 CCCGCTGTGAACAGTAATAAGTT 58.999 43.478 11.87 0.00 45.45 2.66
402 410 7.021790 GTGAACAGTAATAAGTTAGCCAAAGC 58.978 38.462 0.00 0.00 40.32 3.51
451 459 3.691744 CTCTCACGCTGGTCTCCGC 62.692 68.421 0.00 0.00 0.00 5.54
460 468 0.668706 CTGGTCTCCGCTGTCACTTG 60.669 60.000 0.00 0.00 0.00 3.16
466 474 1.227527 CCGCTGTCACTTGTCACCA 60.228 57.895 0.00 0.00 0.00 4.17
473 481 0.828022 TCACTTGTCACCACCGTCTT 59.172 50.000 0.00 0.00 0.00 3.01
476 484 1.485066 ACTTGTCACCACCGTCTTCTT 59.515 47.619 0.00 0.00 0.00 2.52
481 489 1.483004 TCACCACCGTCTTCTTTGTGA 59.517 47.619 0.00 0.00 0.00 3.58
512 520 7.692908 TTTTCTCAAATTAAAGGCTTGTTCG 57.307 32.000 0.00 0.00 0.00 3.95
513 521 5.371115 TCTCAAATTAAAGGCTTGTTCGG 57.629 39.130 0.00 0.00 0.00 4.30
514 522 5.067273 TCTCAAATTAAAGGCTTGTTCGGA 58.933 37.500 0.00 0.00 0.00 4.55
515 523 5.533154 TCTCAAATTAAAGGCTTGTTCGGAA 59.467 36.000 0.00 0.00 0.00 4.30
516 524 6.208599 TCTCAAATTAAAGGCTTGTTCGGAAT 59.791 34.615 0.00 0.00 0.00 3.01
517 525 6.754193 TCAAATTAAAGGCTTGTTCGGAATT 58.246 32.000 0.00 0.00 0.00 2.17
518 526 7.213678 TCAAATTAAAGGCTTGTTCGGAATTT 58.786 30.769 0.00 4.34 0.00 1.82
519 527 7.383843 TCAAATTAAAGGCTTGTTCGGAATTTC 59.616 33.333 0.00 0.00 0.00 2.17
520 528 5.776173 TTAAAGGCTTGTTCGGAATTTCA 57.224 34.783 0.00 0.00 0.00 2.69
521 529 3.643159 AAGGCTTGTTCGGAATTTCAC 57.357 42.857 0.00 0.00 0.00 3.18
522 530 1.886542 AGGCTTGTTCGGAATTTCACC 59.113 47.619 0.00 0.00 0.00 4.02
523 531 1.611491 GGCTTGTTCGGAATTTCACCA 59.389 47.619 0.00 0.00 0.00 4.17
524 532 2.351738 GGCTTGTTCGGAATTTCACCAG 60.352 50.000 0.00 0.00 0.00 4.00
525 533 2.922335 GCTTGTTCGGAATTTCACCAGC 60.922 50.000 0.00 0.00 0.00 4.85
526 534 2.270352 TGTTCGGAATTTCACCAGCT 57.730 45.000 0.00 0.00 0.00 4.24
527 535 2.582052 TGTTCGGAATTTCACCAGCTT 58.418 42.857 0.00 0.00 0.00 3.74
528 536 2.552315 TGTTCGGAATTTCACCAGCTTC 59.448 45.455 0.00 0.00 0.00 3.86
529 537 2.552315 GTTCGGAATTTCACCAGCTTCA 59.448 45.455 0.00 0.00 0.00 3.02
530 538 2.151202 TCGGAATTTCACCAGCTTCAC 58.849 47.619 0.00 0.00 0.00 3.18
531 539 1.135972 CGGAATTTCACCAGCTTCACG 60.136 52.381 0.00 0.00 0.00 4.35
532 540 2.151202 GGAATTTCACCAGCTTCACGA 58.849 47.619 0.00 0.00 0.00 4.35
533 541 2.552315 GGAATTTCACCAGCTTCACGAA 59.448 45.455 0.00 0.00 0.00 3.85
534 542 3.004315 GGAATTTCACCAGCTTCACGAAA 59.996 43.478 0.00 0.00 0.00 3.46
535 543 4.321230 GGAATTTCACCAGCTTCACGAAAT 60.321 41.667 0.00 4.95 37.78 2.17
536 544 4.853924 ATTTCACCAGCTTCACGAAATT 57.146 36.364 0.00 0.00 33.63 1.82
537 545 3.896648 TTCACCAGCTTCACGAAATTC 57.103 42.857 0.00 0.00 0.00 2.17
538 546 2.151202 TCACCAGCTTCACGAAATTCC 58.849 47.619 0.00 0.00 0.00 3.01
539 547 1.879380 CACCAGCTTCACGAAATTCCA 59.121 47.619 0.00 0.00 0.00 3.53
540 548 2.095567 CACCAGCTTCACGAAATTCCAG 60.096 50.000 0.00 0.00 0.00 3.86
541 549 1.470098 CCAGCTTCACGAAATTCCAGG 59.530 52.381 0.00 0.00 0.00 4.45
542 550 2.426522 CAGCTTCACGAAATTCCAGGA 58.573 47.619 0.00 0.00 0.00 3.86
543 551 2.417933 CAGCTTCACGAAATTCCAGGAG 59.582 50.000 0.00 0.00 0.00 3.69
544 552 1.131315 GCTTCACGAAATTCCAGGAGC 59.869 52.381 0.00 0.00 0.00 4.70
545 553 2.704572 CTTCACGAAATTCCAGGAGCT 58.295 47.619 0.00 0.00 0.00 4.09
546 554 3.861840 CTTCACGAAATTCCAGGAGCTA 58.138 45.455 0.00 0.00 0.00 3.32
547 555 4.446371 CTTCACGAAATTCCAGGAGCTAT 58.554 43.478 0.00 0.00 0.00 2.97
548 556 3.797039 TCACGAAATTCCAGGAGCTATG 58.203 45.455 0.00 0.00 0.00 2.23
549 557 2.874701 CACGAAATTCCAGGAGCTATGG 59.125 50.000 10.62 10.62 39.33 2.74
550 558 2.771943 ACGAAATTCCAGGAGCTATGGA 59.228 45.455 14.70 14.70 45.15 3.41
555 563 2.079170 TCCAGGAGCTATGGAGTCAG 57.921 55.000 14.70 0.00 41.96 3.51
556 564 1.047002 CCAGGAGCTATGGAGTCAGG 58.953 60.000 11.30 0.00 40.51 3.86
557 565 1.412217 CCAGGAGCTATGGAGTCAGGA 60.412 57.143 11.30 0.00 40.51 3.86
558 566 2.392662 CAGGAGCTATGGAGTCAGGAA 58.607 52.381 0.00 0.00 0.00 3.36
559 567 2.768527 CAGGAGCTATGGAGTCAGGAAA 59.231 50.000 0.00 0.00 0.00 3.13
560 568 3.390639 CAGGAGCTATGGAGTCAGGAAAT 59.609 47.826 0.00 0.00 0.00 2.17
561 569 4.590647 CAGGAGCTATGGAGTCAGGAAATA 59.409 45.833 0.00 0.00 0.00 1.40
562 570 4.837860 AGGAGCTATGGAGTCAGGAAATAG 59.162 45.833 0.00 0.00 0.00 1.73
563 571 4.562552 GGAGCTATGGAGTCAGGAAATAGC 60.563 50.000 5.10 5.10 43.86 2.97
564 572 4.230455 AGCTATGGAGTCAGGAAATAGCT 58.770 43.478 9.16 9.16 46.97 3.32
565 573 4.314121 GCTATGGAGTCAGGAAATAGCTG 58.686 47.826 0.00 0.00 41.50 4.24
566 574 2.698855 TGGAGTCAGGAAATAGCTGC 57.301 50.000 0.00 0.00 0.00 5.25
567 575 2.191400 TGGAGTCAGGAAATAGCTGCT 58.809 47.619 7.57 7.57 0.00 4.24
568 576 2.169352 TGGAGTCAGGAAATAGCTGCTC 59.831 50.000 4.91 0.00 0.00 4.26
569 577 2.484594 GGAGTCAGGAAATAGCTGCTCC 60.485 54.545 4.91 0.62 35.77 4.70
570 578 1.137872 AGTCAGGAAATAGCTGCTCCG 59.862 52.381 4.91 0.00 34.22 4.63
571 579 0.179073 TCAGGAAATAGCTGCTCCGC 60.179 55.000 4.91 0.00 34.22 5.54
572 580 0.462581 CAGGAAATAGCTGCTCCGCA 60.463 55.000 4.91 0.00 36.92 5.69
582 590 3.094386 TGCTCCGCAGTTTTCAACT 57.906 47.368 0.00 0.00 44.06 3.16
591 599 1.859302 AGTTTTCAACTGCAACCCCA 58.141 45.000 0.00 0.00 41.01 4.96
592 600 1.480545 AGTTTTCAACTGCAACCCCAC 59.519 47.619 0.00 0.00 41.01 4.61
593 601 0.827368 TTTTCAACTGCAACCCCACC 59.173 50.000 0.00 0.00 0.00 4.61
594 602 0.324738 TTTCAACTGCAACCCCACCA 60.325 50.000 0.00 0.00 0.00 4.17
595 603 0.324738 TTCAACTGCAACCCCACCAA 60.325 50.000 0.00 0.00 0.00 3.67
596 604 1.040339 TCAACTGCAACCCCACCAAC 61.040 55.000 0.00 0.00 0.00 3.77
597 605 1.042559 CAACTGCAACCCCACCAACT 61.043 55.000 0.00 0.00 0.00 3.16
598 606 0.755327 AACTGCAACCCCACCAACTC 60.755 55.000 0.00 0.00 0.00 3.01
599 607 1.903404 CTGCAACCCCACCAACTCC 60.903 63.158 0.00 0.00 0.00 3.85
600 608 2.983592 GCAACCCCACCAACTCCG 60.984 66.667 0.00 0.00 0.00 4.63
601 609 2.282180 CAACCCCACCAACTCCGG 60.282 66.667 0.00 0.00 0.00 5.14
602 610 3.576259 AACCCCACCAACTCCGGG 61.576 66.667 0.00 0.00 41.71 5.73
603 611 4.585216 ACCCCACCAACTCCGGGA 62.585 66.667 0.00 0.00 43.21 5.14
604 612 3.717294 CCCCACCAACTCCGGGAG 61.717 72.222 22.40 22.40 43.21 4.30
605 613 2.928396 CCCACCAACTCCGGGAGT 60.928 66.667 23.90 23.90 45.64 3.85
606 614 2.347490 CCACCAACTCCGGGAGTG 59.653 66.667 29.37 19.88 42.59 3.51
607 615 2.347490 CACCAACTCCGGGAGTGG 59.653 66.667 29.37 29.08 42.59 4.00
608 616 2.203182 ACCAACTCCGGGAGTGGA 59.797 61.111 33.44 6.38 42.59 4.02
614 622 2.203938 TCCGGGAGTGGAGGCTTT 60.204 61.111 0.00 0.00 33.05 3.51
615 623 2.269241 CCGGGAGTGGAGGCTTTC 59.731 66.667 0.00 0.00 0.00 2.62
616 624 2.269241 CGGGAGTGGAGGCTTTCC 59.731 66.667 0.00 1.38 46.98 3.13
623 631 4.303257 GGAGGCTTTCCGAACAGG 57.697 61.111 0.00 0.00 42.97 4.00
624 632 1.377333 GGAGGCTTTCCGAACAGGG 60.377 63.158 0.00 0.00 41.52 4.45
625 633 2.034221 AGGCTTTCCGAACAGGGC 59.966 61.111 0.00 0.00 41.52 5.19
626 634 3.062466 GGCTTTCCGAACAGGGCC 61.062 66.667 0.00 0.00 41.52 5.80
627 635 2.034221 GCTTTCCGAACAGGGCCT 59.966 61.111 0.00 0.00 41.52 5.19
645 653 0.526662 CTAAGTCCAAGTCGCGGAGT 59.473 55.000 6.13 0.00 37.84 3.85
708 716 1.905215 CCAGTCAACTCATCACTCCCT 59.095 52.381 0.00 0.00 0.00 4.20
722 733 1.064906 ACTCCCTCGTCAACTCCGATA 60.065 52.381 0.00 0.00 33.27 2.92
751 765 2.416836 GCGCCTAATCACTGTCACTGTA 60.417 50.000 0.00 0.00 0.00 2.74
752 766 3.738281 GCGCCTAATCACTGTCACTGTAT 60.738 47.826 0.00 0.00 0.00 2.29
772 786 2.029838 AAGCTAAGCTTCACATCGGG 57.970 50.000 0.00 0.00 46.77 5.14
809 823 3.740397 TCCACGTACGGGCAGTCG 61.740 66.667 21.06 1.90 0.00 4.18
828 842 4.069232 TCTTCAGAGCGTGCCCCG 62.069 66.667 0.00 0.00 40.40 5.73
899 913 2.236146 TGGCGACCACATCTTAGTCATT 59.764 45.455 0.00 0.00 0.00 2.57
900 914 2.609459 GGCGACCACATCTTAGTCATTG 59.391 50.000 0.00 0.00 0.00 2.82
972 991 2.761195 GGAACGAGCCGCCCAAATC 61.761 63.158 0.00 0.00 0.00 2.17
983 1002 2.029470 CCGCCCAAATCAAAAAGCAGTA 60.029 45.455 0.00 0.00 0.00 2.74
984 1003 3.244976 CGCCCAAATCAAAAAGCAGTAG 58.755 45.455 0.00 0.00 0.00 2.57
987 1006 5.563867 CGCCCAAATCAAAAAGCAGTAGTAA 60.564 40.000 0.00 0.00 0.00 2.24
989 1008 7.543756 GCCCAAATCAAAAAGCAGTAGTAATA 58.456 34.615 0.00 0.00 0.00 0.98
990 1009 8.197439 GCCCAAATCAAAAAGCAGTAGTAATAT 58.803 33.333 0.00 0.00 0.00 1.28
1007 1068 6.482524 AGTAATATCTACAGTCTATGGGCGA 58.517 40.000 0.00 0.00 0.00 5.54
1610 1678 3.003763 GGGGACGAGGAGGCTGTT 61.004 66.667 0.00 0.00 0.00 3.16
1668 1736 0.250234 CTTCCACCCGATCTGCTTCA 59.750 55.000 0.00 0.00 0.00 3.02
1721 1795 4.511786 TGGGATGTTTATTCCATCGGAA 57.488 40.909 0.00 0.00 46.39 4.30
1725 1799 4.025145 GGATGTTTATTCCATCGGAACGTC 60.025 45.833 0.00 0.00 45.07 4.34
1776 1850 4.077108 TGTCTGGTCTCTACGTGTACAAT 58.923 43.478 0.00 0.00 0.00 2.71
1787 1861 3.002791 ACGTGTACAATTCTGGCAGATG 58.997 45.455 19.50 16.85 0.00 2.90
1792 1866 5.468072 GTGTACAATTCTGGCAGATGGATAG 59.532 44.000 19.50 8.03 0.00 2.08
1794 1868 5.121380 ACAATTCTGGCAGATGGATAGTT 57.879 39.130 19.50 2.55 0.00 2.24
1808 1882 8.557864 CAGATGGATAGTTCATTTCTTGACATC 58.442 37.037 0.00 0.00 32.84 3.06
1818 1892 6.441274 TCATTTCTTGACATCTTGAGTTTGC 58.559 36.000 0.00 0.00 0.00 3.68
1834 1908 1.555967 TTGCCTGCCAGGGAAATAAC 58.444 50.000 16.03 0.00 43.01 1.89
1836 1910 1.203112 TGCCTGCCAGGGAAATAACAA 60.203 47.619 13.78 0.00 35.37 2.83
1838 1912 1.478105 CCTGCCAGGGAAATAACAAGC 59.522 52.381 1.63 0.00 0.00 4.01
1851 1925 7.260603 GGAAATAACAAGCTGTGCATCTTATT 58.739 34.615 0.00 0.00 0.00 1.40
1862 1936 6.749118 GCTGTGCATCTTATTGTTAAAAGAGG 59.251 38.462 0.00 0.00 36.77 3.69
1865 1939 7.615365 TGTGCATCTTATTGTTAAAAGAGGGAT 59.385 33.333 0.00 0.00 36.50 3.85
1871 1945 4.893424 TTGTTAAAAGAGGGATATGCGC 57.107 40.909 0.00 0.00 0.00 6.09
1889 1963 1.478510 CGCCACTAGTCCATGAACTCT 59.521 52.381 0.00 0.00 0.00 3.24
1890 1964 2.688446 CGCCACTAGTCCATGAACTCTA 59.312 50.000 0.00 0.00 0.00 2.43
1939 2013 7.361799 GCTTGTGAACTAACTATTTTACAGGGG 60.362 40.741 0.00 0.00 0.00 4.79
1958 2032 7.396418 ACAGGGGTCTATTCGTAAATTAAACA 58.604 34.615 0.00 0.00 0.00 2.83
1960 2034 7.767198 CAGGGGTCTATTCGTAAATTAAACAGA 59.233 37.037 0.00 0.00 0.00 3.41
1961 2035 8.491958 AGGGGTCTATTCGTAAATTAAACAGAT 58.508 33.333 0.00 0.00 0.00 2.90
1962 2036 9.117183 GGGGTCTATTCGTAAATTAAACAGATT 57.883 33.333 0.00 0.00 0.00 2.40
2001 2075 4.866508 TTATAACAGCGTATGGAGGGAG 57.133 45.455 0.00 0.00 0.00 4.30
2006 2080 2.505819 ACAGCGTATGGAGGGAGAAAAT 59.494 45.455 0.00 0.00 0.00 1.82
2012 2086 7.065085 CAGCGTATGGAGGGAGAAAATTATATG 59.935 40.741 0.00 0.00 0.00 1.78
2163 2238 5.693104 CACAAGCTTTTGTGTTAGCAATCAT 59.307 36.000 9.92 0.00 45.28 2.45
2164 2239 5.922544 ACAAGCTTTTGTGTTAGCAATCATC 59.077 36.000 0.00 0.00 39.85 2.92
2165 2240 5.710513 AGCTTTTGTGTTAGCAATCATCA 57.289 34.783 0.00 0.00 39.85 3.07
2206 2281 2.755655 ACGCTGTGAGCTGTCTACTATT 59.244 45.455 0.00 0.00 39.60 1.73
2207 2282 3.945921 ACGCTGTGAGCTGTCTACTATTA 59.054 43.478 0.00 0.00 39.60 0.98
2208 2283 4.580995 ACGCTGTGAGCTGTCTACTATTAT 59.419 41.667 0.00 0.00 39.60 1.28
2209 2284 4.914504 CGCTGTGAGCTGTCTACTATTATG 59.085 45.833 0.00 0.00 39.60 1.90
2210 2285 4.683781 GCTGTGAGCTGTCTACTATTATGC 59.316 45.833 0.00 0.00 38.45 3.14
2211 2286 5.737349 GCTGTGAGCTGTCTACTATTATGCA 60.737 44.000 0.00 0.00 38.45 3.96
2212 2287 5.836347 TGTGAGCTGTCTACTATTATGCAG 58.164 41.667 0.00 0.00 0.00 4.41
2213 2288 4.683781 GTGAGCTGTCTACTATTATGCAGC 59.316 45.833 0.00 6.26 46.60 5.25
2215 2290 3.330267 GCTGTCTACTATTATGCAGCCC 58.670 50.000 0.00 0.00 42.21 5.19
2216 2291 3.244215 GCTGTCTACTATTATGCAGCCCA 60.244 47.826 0.00 0.00 42.21 5.36
2217 2292 4.310769 CTGTCTACTATTATGCAGCCCAC 58.689 47.826 0.00 0.00 0.00 4.61
2218 2293 3.967326 TGTCTACTATTATGCAGCCCACT 59.033 43.478 0.00 0.00 0.00 4.00
2219 2294 4.408921 TGTCTACTATTATGCAGCCCACTT 59.591 41.667 0.00 0.00 0.00 3.16
2220 2295 4.991687 GTCTACTATTATGCAGCCCACTTC 59.008 45.833 0.00 0.00 0.00 3.01
2221 2296 3.931907 ACTATTATGCAGCCCACTTCA 57.068 42.857 0.00 0.00 0.00 3.02
2222 2297 4.443978 ACTATTATGCAGCCCACTTCAT 57.556 40.909 0.00 0.00 34.03 2.57
2223 2298 5.567037 ACTATTATGCAGCCCACTTCATA 57.433 39.130 0.00 0.00 31.81 2.15
2224 2299 6.131972 ACTATTATGCAGCCCACTTCATAT 57.868 37.500 0.00 0.00 32.99 1.78
2225 2300 6.176183 ACTATTATGCAGCCCACTTCATATC 58.824 40.000 0.00 0.00 32.99 1.63
2226 2301 4.436113 TTATGCAGCCCACTTCATATCA 57.564 40.909 0.00 0.00 32.99 2.15
2227 2302 2.042686 TGCAGCCCACTTCATATCAC 57.957 50.000 0.00 0.00 0.00 3.06
2228 2303 0.940126 GCAGCCCACTTCATATCACG 59.060 55.000 0.00 0.00 0.00 4.35
2229 2304 1.743772 GCAGCCCACTTCATATCACGT 60.744 52.381 0.00 0.00 0.00 4.49
2230 2305 2.483013 GCAGCCCACTTCATATCACGTA 60.483 50.000 0.00 0.00 0.00 3.57
2231 2306 3.384668 CAGCCCACTTCATATCACGTAG 58.615 50.000 0.00 0.00 0.00 3.51
2232 2307 3.068165 CAGCCCACTTCATATCACGTAGA 59.932 47.826 0.00 0.00 0.00 2.59
2233 2308 3.704566 AGCCCACTTCATATCACGTAGAA 59.295 43.478 0.00 0.00 0.00 2.10
2234 2309 4.345257 AGCCCACTTCATATCACGTAGAAT 59.655 41.667 0.00 0.00 0.00 2.40
2235 2310 4.686554 GCCCACTTCATATCACGTAGAATC 59.313 45.833 0.00 0.00 0.00 2.52
2236 2311 5.739070 GCCCACTTCATATCACGTAGAATCA 60.739 44.000 0.00 0.00 0.00 2.57
2237 2312 6.280643 CCCACTTCATATCACGTAGAATCAA 58.719 40.000 0.00 0.00 0.00 2.57
2238 2313 6.422100 CCCACTTCATATCACGTAGAATCAAG 59.578 42.308 0.00 0.00 0.00 3.02
2239 2314 7.203218 CCACTTCATATCACGTAGAATCAAGA 58.797 38.462 0.00 0.00 0.00 3.02
2240 2315 7.380870 CCACTTCATATCACGTAGAATCAAGAG 59.619 40.741 0.00 0.00 0.00 2.85
2241 2316 7.918033 CACTTCATATCACGTAGAATCAAGAGT 59.082 37.037 0.00 0.00 0.00 3.24
2242 2317 7.918033 ACTTCATATCACGTAGAATCAAGAGTG 59.082 37.037 0.00 0.00 0.00 3.51
2243 2318 6.739112 TCATATCACGTAGAATCAAGAGTGG 58.261 40.000 0.00 0.00 0.00 4.00
2244 2319 6.546034 TCATATCACGTAGAATCAAGAGTGGA 59.454 38.462 0.00 0.00 0.00 4.02
2245 2320 5.661056 ATCACGTAGAATCAAGAGTGGAA 57.339 39.130 0.00 0.00 0.00 3.53
2307 2382 9.671279 AGTGAAATATGTACATCATGAGAACAA 57.329 29.630 12.68 0.00 37.91 2.83
2408 2483 7.712264 TCAAAGTTCTAAAACATTGCAATGG 57.288 32.000 35.85 21.40 41.54 3.16
2446 2521 6.620877 AACTATCCACCACATAGTTCTTCA 57.379 37.500 0.19 0.00 41.31 3.02
2485 2560 5.300969 AGCTGCACAGTAATACACAAATG 57.699 39.130 1.02 0.00 0.00 2.32
2501 2576 6.613233 ACACAAATGTTTTCGTGTTTGAGTA 58.387 32.000 3.96 0.00 39.49 2.59
2506 2581 5.712217 TGTTTTCGTGTTTGAGTAGTCAG 57.288 39.130 0.00 0.00 32.98 3.51
2507 2582 4.569162 TGTTTTCGTGTTTGAGTAGTCAGG 59.431 41.667 0.00 0.00 32.98 3.86
2508 2583 4.659111 TTTCGTGTTTGAGTAGTCAGGA 57.341 40.909 0.00 0.00 32.98 3.86
2515 2590 4.228317 GTTTGAGTAGTCAGGAAGTCGAC 58.772 47.826 7.70 7.70 32.98 4.20
2528 2603 2.898729 AGTCGACTGCTAATCCATGG 57.101 50.000 19.30 4.97 0.00 3.66
2608 2683 4.860907 GGCTGCATTTCAGAACATAAACTG 59.139 41.667 0.50 0.00 45.72 3.16
2647 2722 1.527433 GCCAGACCTTTCCAACAGCC 61.527 60.000 0.00 0.00 0.00 4.85
2652 2727 0.106918 ACCTTTCCAACAGCCAACGA 60.107 50.000 0.00 0.00 0.00 3.85
2656 2731 0.817634 TTCCAACAGCCAACGACCTG 60.818 55.000 0.00 0.00 35.26 4.00
2657 2732 2.260869 CCAACAGCCAACGACCTGG 61.261 63.158 0.00 0.00 39.71 4.45
2658 2733 2.113139 AACAGCCAACGACCTGGG 59.887 61.111 0.00 0.00 36.92 4.45
2660 2735 2.113139 CAGCCAACGACCTGGGTT 59.887 61.111 0.00 0.00 44.90 4.11
2661 2736 1.966451 CAGCCAACGACCTGGGTTC 60.966 63.158 0.00 0.00 44.90 3.62
2662 2737 2.112297 GCCAACGACCTGGGTTCA 59.888 61.111 0.00 0.00 36.92 3.18
2663 2738 1.303317 GCCAACGACCTGGGTTCAT 60.303 57.895 0.00 0.00 36.92 2.57
2664 2739 0.035820 GCCAACGACCTGGGTTCATA 60.036 55.000 0.00 0.00 36.92 2.15
2665 2740 1.408266 GCCAACGACCTGGGTTCATAT 60.408 52.381 0.00 0.00 36.92 1.78
2666 2741 2.561569 CCAACGACCTGGGTTCATATC 58.438 52.381 0.00 0.00 32.32 1.63
2667 2742 2.093181 CCAACGACCTGGGTTCATATCA 60.093 50.000 0.00 0.00 32.32 2.15
2668 2743 3.433598 CCAACGACCTGGGTTCATATCAT 60.434 47.826 0.00 0.00 32.32 2.45
2669 2744 4.202315 CCAACGACCTGGGTTCATATCATA 60.202 45.833 0.00 0.00 32.32 2.15
2670 2745 4.602340 ACGACCTGGGTTCATATCATAC 57.398 45.455 0.00 0.00 0.00 2.39
2671 2746 4.223953 ACGACCTGGGTTCATATCATACT 58.776 43.478 0.00 0.00 0.00 2.12
2672 2747 4.654262 ACGACCTGGGTTCATATCATACTT 59.346 41.667 0.00 0.00 0.00 2.24
2673 2748 4.991056 CGACCTGGGTTCATATCATACTTG 59.009 45.833 0.00 0.00 0.00 3.16
2674 2749 4.718961 ACCTGGGTTCATATCATACTTGC 58.281 43.478 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.970711 AGGCAGAAGATCCTCAATACATG 58.029 43.478 0.00 0.00 0.00 3.21
1 2 5.226194 GAGGCAGAAGATCCTCAATACAT 57.774 43.478 3.60 0.00 46.24 2.29
2 3 4.679373 GAGGCAGAAGATCCTCAATACA 57.321 45.455 3.60 0.00 46.24 2.29
9 10 2.364970 CAATCGAGAGGCAGAAGATCCT 59.635 50.000 0.00 0.00 34.90 3.24
10 11 2.102252 ACAATCGAGAGGCAGAAGATCC 59.898 50.000 0.00 0.00 0.00 3.36
11 12 3.451141 ACAATCGAGAGGCAGAAGATC 57.549 47.619 0.00 0.00 0.00 2.75
12 13 4.442192 GGTTACAATCGAGAGGCAGAAGAT 60.442 45.833 0.00 0.00 0.00 2.40
13 14 3.119101 GGTTACAATCGAGAGGCAGAAGA 60.119 47.826 0.00 0.00 0.00 2.87
14 15 3.190874 GGTTACAATCGAGAGGCAGAAG 58.809 50.000 0.00 0.00 0.00 2.85
15 16 2.093658 GGGTTACAATCGAGAGGCAGAA 60.094 50.000 0.00 0.00 0.00 3.02
16 17 1.480954 GGGTTACAATCGAGAGGCAGA 59.519 52.381 0.00 0.00 0.00 4.26
17 18 1.482593 AGGGTTACAATCGAGAGGCAG 59.517 52.381 0.00 0.00 0.00 4.85
18 19 1.568504 AGGGTTACAATCGAGAGGCA 58.431 50.000 0.00 0.00 0.00 4.75
19 20 4.338379 AATAGGGTTACAATCGAGAGGC 57.662 45.455 0.00 0.00 0.00 4.70
20 21 9.021807 TCTAATAATAGGGTTACAATCGAGAGG 57.978 37.037 0.00 0.00 0.00 3.69
80 81 8.141835 TCCGATTATCATTGACAATGTAAGTG 57.858 34.615 23.98 16.54 39.87 3.16
81 82 8.731275 TTCCGATTATCATTGACAATGTAAGT 57.269 30.769 23.98 12.35 39.87 2.24
82 83 9.045223 TCTTCCGATTATCATTGACAATGTAAG 57.955 33.333 23.98 15.39 39.87 2.34
83 84 8.956533 TCTTCCGATTATCATTGACAATGTAA 57.043 30.769 23.98 20.31 39.87 2.41
84 85 8.956533 TTCTTCCGATTATCATTGACAATGTA 57.043 30.769 23.98 14.47 39.87 2.29
85 86 7.770433 TCTTCTTCCGATTATCATTGACAATGT 59.230 33.333 23.98 15.31 39.87 2.71
86 87 8.146479 TCTTCTTCCGATTATCATTGACAATG 57.854 34.615 20.15 20.15 40.28 2.82
87 88 8.737168 TTCTTCTTCCGATTATCATTGACAAT 57.263 30.769 0.00 0.00 0.00 2.71
88 89 8.560355 TTTCTTCTTCCGATTATCATTGACAA 57.440 30.769 0.00 0.00 0.00 3.18
89 90 8.450964 GTTTTCTTCTTCCGATTATCATTGACA 58.549 33.333 0.00 0.00 0.00 3.58
90 91 8.669243 AGTTTTCTTCTTCCGATTATCATTGAC 58.331 33.333 0.00 0.00 0.00 3.18
91 92 8.792830 AGTTTTCTTCTTCCGATTATCATTGA 57.207 30.769 0.00 0.00 0.00 2.57
95 96 9.938280 TTCTTAGTTTTCTTCTTCCGATTATCA 57.062 29.630 0.00 0.00 0.00 2.15
97 98 9.384764 CCTTCTTAGTTTTCTTCTTCCGATTAT 57.615 33.333 0.00 0.00 0.00 1.28
98 99 7.822822 CCCTTCTTAGTTTTCTTCTTCCGATTA 59.177 37.037 0.00 0.00 0.00 1.75
99 100 6.655425 CCCTTCTTAGTTTTCTTCTTCCGATT 59.345 38.462 0.00 0.00 0.00 3.34
100 101 6.174049 CCCTTCTTAGTTTTCTTCTTCCGAT 58.826 40.000 0.00 0.00 0.00 4.18
101 102 5.512576 CCCCTTCTTAGTTTTCTTCTTCCGA 60.513 44.000 0.00 0.00 0.00 4.55
102 103 4.695928 CCCCTTCTTAGTTTTCTTCTTCCG 59.304 45.833 0.00 0.00 0.00 4.30
103 104 5.632118 ACCCCTTCTTAGTTTTCTTCTTCC 58.368 41.667 0.00 0.00 0.00 3.46
104 105 6.546403 ACAACCCCTTCTTAGTTTTCTTCTTC 59.454 38.462 0.00 0.00 0.00 2.87
105 106 6.432581 ACAACCCCTTCTTAGTTTTCTTCTT 58.567 36.000 0.00 0.00 0.00 2.52
106 107 6.014771 ACAACCCCTTCTTAGTTTTCTTCT 57.985 37.500 0.00 0.00 0.00 2.85
107 108 5.241064 GGACAACCCCTTCTTAGTTTTCTTC 59.759 44.000 0.00 0.00 0.00 2.87
108 109 5.138276 GGACAACCCCTTCTTAGTTTTCTT 58.862 41.667 0.00 0.00 0.00 2.52
109 110 4.167307 TGGACAACCCCTTCTTAGTTTTCT 59.833 41.667 0.00 0.00 34.81 2.52
110 111 4.466827 TGGACAACCCCTTCTTAGTTTTC 58.533 43.478 0.00 0.00 34.81 2.29
111 112 4.470602 CTGGACAACCCCTTCTTAGTTTT 58.529 43.478 0.00 0.00 34.81 2.43
112 113 3.750922 GCTGGACAACCCCTTCTTAGTTT 60.751 47.826 0.00 0.00 34.81 2.66
113 114 2.224793 GCTGGACAACCCCTTCTTAGTT 60.225 50.000 0.00 0.00 34.81 2.24
114 115 1.351350 GCTGGACAACCCCTTCTTAGT 59.649 52.381 0.00 0.00 34.81 2.24
115 116 1.340114 GGCTGGACAACCCCTTCTTAG 60.340 57.143 0.00 0.00 34.81 2.18
116 117 0.696501 GGCTGGACAACCCCTTCTTA 59.303 55.000 0.00 0.00 34.81 2.10
117 118 1.360393 TGGCTGGACAACCCCTTCTT 61.360 55.000 0.00 0.00 34.81 2.52
118 119 1.142688 ATGGCTGGACAACCCCTTCT 61.143 55.000 0.00 0.00 34.81 2.85
119 120 0.623723 TATGGCTGGACAACCCCTTC 59.376 55.000 0.00 0.00 34.81 3.46
120 121 0.331616 GTATGGCTGGACAACCCCTT 59.668 55.000 0.00 0.00 34.81 3.95
121 122 0.844661 TGTATGGCTGGACAACCCCT 60.845 55.000 0.00 0.00 34.81 4.79
122 123 0.394352 CTGTATGGCTGGACAACCCC 60.394 60.000 0.00 0.00 34.81 4.95
123 124 0.618458 TCTGTATGGCTGGACAACCC 59.382 55.000 0.00 0.00 34.81 4.11
124 125 1.739067 GTCTGTATGGCTGGACAACC 58.261 55.000 0.00 0.00 0.00 3.77
125 126 1.359848 CGTCTGTATGGCTGGACAAC 58.640 55.000 0.00 0.00 0.00 3.32
126 127 0.249120 CCGTCTGTATGGCTGGACAA 59.751 55.000 0.00 0.00 0.00 3.18
127 128 1.897423 CCGTCTGTATGGCTGGACA 59.103 57.895 0.00 0.00 0.00 4.02
128 129 4.835927 CCGTCTGTATGGCTGGAC 57.164 61.111 0.00 0.00 0.00 4.02
134 135 0.104120 TTGATCCGCCGTCTGTATGG 59.896 55.000 0.00 0.00 34.56 2.74
135 136 1.202417 AGTTGATCCGCCGTCTGTATG 60.202 52.381 0.00 0.00 0.00 2.39
136 137 1.067212 GAGTTGATCCGCCGTCTGTAT 59.933 52.381 0.00 0.00 0.00 2.29
137 138 0.454600 GAGTTGATCCGCCGTCTGTA 59.545 55.000 0.00 0.00 0.00 2.74
138 139 1.215647 GAGTTGATCCGCCGTCTGT 59.784 57.895 0.00 0.00 0.00 3.41
139 140 0.526524 GAGAGTTGATCCGCCGTCTG 60.527 60.000 0.00 0.00 0.00 3.51
140 141 1.810532 GAGAGTTGATCCGCCGTCT 59.189 57.895 0.00 0.00 0.00 4.18
141 142 1.586564 CGAGAGTTGATCCGCCGTC 60.587 63.158 0.00 0.00 0.00 4.79
142 143 2.490217 CGAGAGTTGATCCGCCGT 59.510 61.111 0.00 0.00 0.00 5.68
143 144 2.956964 GCGAGAGTTGATCCGCCG 60.957 66.667 0.00 0.00 39.93 6.46
145 146 1.880340 CAGGCGAGAGTTGATCCGC 60.880 63.158 3.55 3.55 42.96 5.54
146 147 0.526524 GTCAGGCGAGAGTTGATCCG 60.527 60.000 0.00 0.00 31.52 4.18
147 148 0.820871 AGTCAGGCGAGAGTTGATCC 59.179 55.000 0.00 0.00 31.52 3.36
148 149 2.542824 GCTAGTCAGGCGAGAGTTGATC 60.543 54.545 0.00 0.00 31.52 2.92
149 150 1.407258 GCTAGTCAGGCGAGAGTTGAT 59.593 52.381 0.00 0.00 31.52 2.57
150 151 0.811915 GCTAGTCAGGCGAGAGTTGA 59.188 55.000 0.00 0.00 0.00 3.18
151 152 0.814457 AGCTAGTCAGGCGAGAGTTG 59.186 55.000 0.00 0.00 34.52 3.16
152 153 2.018515 GTAGCTAGTCAGGCGAGAGTT 58.981 52.381 0.00 0.00 34.52 3.01
153 154 1.065345 TGTAGCTAGTCAGGCGAGAGT 60.065 52.381 0.00 0.00 34.52 3.24
154 155 1.669604 TGTAGCTAGTCAGGCGAGAG 58.330 55.000 0.00 0.00 34.52 3.20
155 156 2.124277 TTGTAGCTAGTCAGGCGAGA 57.876 50.000 0.00 0.00 34.52 4.04
156 157 2.941453 TTTGTAGCTAGTCAGGCGAG 57.059 50.000 0.00 0.00 34.52 5.03
157 158 3.671008 TTTTTGTAGCTAGTCAGGCGA 57.329 42.857 0.00 0.00 34.52 5.54
174 175 7.324935 GTCCACGGACCCATTTATTTATTTTT 58.675 34.615 4.78 0.00 39.08 1.94
175 176 6.869695 GTCCACGGACCCATTTATTTATTTT 58.130 36.000 4.78 0.00 39.08 1.82
176 177 6.459670 GTCCACGGACCCATTTATTTATTT 57.540 37.500 4.78 0.00 39.08 1.40
193 194 0.446222 CACTAATTTGCCGGTCCACG 59.554 55.000 1.90 0.00 43.80 4.94
194 195 1.737793 CTCACTAATTTGCCGGTCCAC 59.262 52.381 1.90 0.00 0.00 4.02
195 196 1.948611 GCTCACTAATTTGCCGGTCCA 60.949 52.381 1.90 0.00 0.00 4.02
196 197 0.733150 GCTCACTAATTTGCCGGTCC 59.267 55.000 1.90 0.00 0.00 4.46
197 198 1.739067 AGCTCACTAATTTGCCGGTC 58.261 50.000 1.90 0.00 0.00 4.79
198 199 2.200373 AAGCTCACTAATTTGCCGGT 57.800 45.000 1.90 0.00 0.00 5.28
199 200 4.900635 ATAAAGCTCACTAATTTGCCGG 57.099 40.909 0.00 0.00 0.00 6.13
200 201 8.856490 ATAAAATAAAGCTCACTAATTTGCCG 57.144 30.769 0.00 0.00 0.00 5.69
233 234 7.140048 ACTGACAAAACTGACAAACGTAAAAA 58.860 30.769 0.00 0.00 0.00 1.94
234 235 6.670233 ACTGACAAAACTGACAAACGTAAAA 58.330 32.000 0.00 0.00 0.00 1.52
235 236 6.243811 ACTGACAAAACTGACAAACGTAAA 57.756 33.333 0.00 0.00 0.00 2.01
236 237 5.866335 ACTGACAAAACTGACAAACGTAA 57.134 34.783 0.00 0.00 0.00 3.18
237 238 5.866335 AACTGACAAAACTGACAAACGTA 57.134 34.783 0.00 0.00 0.00 3.57
238 239 4.759516 AACTGACAAAACTGACAAACGT 57.240 36.364 0.00 0.00 0.00 3.99
239 240 7.555639 TTAAAACTGACAAAACTGACAAACG 57.444 32.000 0.00 0.00 0.00 3.60
240 241 8.756864 TGTTTAAAACTGACAAAACTGACAAAC 58.243 29.630 0.00 0.00 33.89 2.93
241 242 8.756864 GTGTTTAAAACTGACAAAACTGACAAA 58.243 29.630 0.00 0.00 33.89 2.83
242 243 7.921214 TGTGTTTAAAACTGACAAAACTGACAA 59.079 29.630 0.00 0.00 33.89 3.18
243 244 7.426410 TGTGTTTAAAACTGACAAAACTGACA 58.574 30.769 0.00 0.00 33.89 3.58
244 245 7.861176 TGTGTTTAAAACTGACAAAACTGAC 57.139 32.000 0.00 0.00 33.89 3.51
252 253 9.171701 GCGTTTATATTGTGTTTAAAACTGACA 57.828 29.630 0.00 0.00 0.00 3.58
253 254 9.171701 TGCGTTTATATTGTGTTTAAAACTGAC 57.828 29.630 0.00 0.00 0.00 3.51
254 255 9.731819 TTGCGTTTATATTGTGTTTAAAACTGA 57.268 25.926 0.00 0.00 0.00 3.41
255 256 9.987901 CTTGCGTTTATATTGTGTTTAAAACTG 57.012 29.630 0.00 0.00 0.00 3.16
256 257 9.738832 ACTTGCGTTTATATTGTGTTTAAAACT 57.261 25.926 0.00 0.00 0.00 2.66
257 258 9.772282 CACTTGCGTTTATATTGTGTTTAAAAC 57.228 29.630 0.00 0.00 0.00 2.43
258 259 8.480853 GCACTTGCGTTTATATTGTGTTTAAAA 58.519 29.630 0.00 0.00 0.00 1.52
259 260 7.998141 GCACTTGCGTTTATATTGTGTTTAAA 58.002 30.769 0.00 0.00 0.00 1.52
260 261 7.555639 GCACTTGCGTTTATATTGTGTTTAA 57.444 32.000 0.00 0.00 0.00 1.52
277 278 1.202348 GCAACAACTGACGCACTTGC 61.202 55.000 0.00 0.00 37.78 4.01
278 279 0.098552 TGCAACAACTGACGCACTTG 59.901 50.000 0.00 0.00 0.00 3.16
279 280 0.808125 TTGCAACAACTGACGCACTT 59.192 45.000 0.00 0.00 33.29 3.16
280 281 0.808125 TTTGCAACAACTGACGCACT 59.192 45.000 0.00 0.00 33.29 4.40
281 282 1.623359 TTTTGCAACAACTGACGCAC 58.377 45.000 0.00 0.00 33.29 5.34
282 283 2.095008 TCTTTTTGCAACAACTGACGCA 60.095 40.909 0.00 0.00 0.00 5.24
283 284 2.525055 TCTTTTTGCAACAACTGACGC 58.475 42.857 0.00 0.00 0.00 5.19
284 285 4.490799 GCTTTCTTTTTGCAACAACTGACG 60.491 41.667 0.00 0.00 0.00 4.35
377 380 7.021790 GCTTTGGCTAACTTATTACTGTTCAC 58.978 38.462 0.00 0.00 35.22 3.18
378 381 6.128391 CGCTTTGGCTAACTTATTACTGTTCA 60.128 38.462 0.00 0.00 36.09 3.18
379 382 6.248631 CGCTTTGGCTAACTTATTACTGTTC 58.751 40.000 0.00 0.00 36.09 3.18
381 384 4.634443 CCGCTTTGGCTAACTTATTACTGT 59.366 41.667 0.00 0.00 36.09 3.55
382 385 5.156804 CCGCTTTGGCTAACTTATTACTG 57.843 43.478 0.00 0.00 36.09 2.74
440 448 2.433318 GTGACAGCGGAGACCAGC 60.433 66.667 0.00 0.00 0.00 4.85
451 459 0.179084 ACGGTGGTGACAAGTGACAG 60.179 55.000 0.00 0.00 46.06 3.51
460 468 1.597663 CACAAAGAAGACGGTGGTGAC 59.402 52.381 0.00 0.00 0.00 3.67
466 474 5.638596 AAAAGTTTCACAAAGAAGACGGT 57.361 34.783 0.00 0.00 37.57 4.83
492 500 5.371115 TCCGAACAAGCCTTTAATTTGAG 57.629 39.130 0.00 0.00 0.00 3.02
493 501 5.776173 TTCCGAACAAGCCTTTAATTTGA 57.224 34.783 0.00 0.00 0.00 2.69
495 503 7.170828 GTGAAATTCCGAACAAGCCTTTAATTT 59.829 33.333 0.00 0.00 0.00 1.82
497 505 6.156519 GTGAAATTCCGAACAAGCCTTTAAT 58.843 36.000 0.00 0.00 0.00 1.40
498 506 5.508320 GGTGAAATTCCGAACAAGCCTTTAA 60.508 40.000 0.00 0.00 0.00 1.52
499 507 4.022676 GGTGAAATTCCGAACAAGCCTTTA 60.023 41.667 0.00 0.00 0.00 1.85
500 508 3.243737 GGTGAAATTCCGAACAAGCCTTT 60.244 43.478 0.00 0.00 0.00 3.11
501 509 2.296190 GGTGAAATTCCGAACAAGCCTT 59.704 45.455 0.00 0.00 0.00 4.35
502 510 1.886542 GGTGAAATTCCGAACAAGCCT 59.113 47.619 0.00 0.00 0.00 4.58
503 511 1.611491 TGGTGAAATTCCGAACAAGCC 59.389 47.619 0.00 0.00 0.00 4.35
504 512 2.922335 GCTGGTGAAATTCCGAACAAGC 60.922 50.000 0.00 0.00 0.00 4.01
505 513 2.554032 AGCTGGTGAAATTCCGAACAAG 59.446 45.455 0.00 0.00 0.00 3.16
506 514 2.582052 AGCTGGTGAAATTCCGAACAA 58.418 42.857 0.00 0.00 0.00 2.83
507 515 2.270352 AGCTGGTGAAATTCCGAACA 57.730 45.000 0.00 0.00 0.00 3.18
508 516 2.552315 TGAAGCTGGTGAAATTCCGAAC 59.448 45.455 0.00 0.00 0.00 3.95
509 517 2.552315 GTGAAGCTGGTGAAATTCCGAA 59.448 45.455 0.00 0.00 0.00 4.30
510 518 2.151202 GTGAAGCTGGTGAAATTCCGA 58.849 47.619 0.00 0.00 0.00 4.55
511 519 1.135972 CGTGAAGCTGGTGAAATTCCG 60.136 52.381 0.00 0.00 0.00 4.30
512 520 2.151202 TCGTGAAGCTGGTGAAATTCC 58.849 47.619 0.00 0.00 0.00 3.01
513 521 3.896648 TTCGTGAAGCTGGTGAAATTC 57.103 42.857 0.00 0.00 0.00 2.17
514 522 4.853924 ATTTCGTGAAGCTGGTGAAATT 57.146 36.364 9.43 0.00 36.21 1.82
515 523 4.321230 GGAATTTCGTGAAGCTGGTGAAAT 60.321 41.667 9.43 9.43 40.05 2.17
516 524 3.004315 GGAATTTCGTGAAGCTGGTGAAA 59.996 43.478 0.00 0.00 33.56 2.69
517 525 2.552315 GGAATTTCGTGAAGCTGGTGAA 59.448 45.455 0.00 0.00 0.00 3.18
518 526 2.151202 GGAATTTCGTGAAGCTGGTGA 58.849 47.619 0.00 0.00 0.00 4.02
519 527 1.879380 TGGAATTTCGTGAAGCTGGTG 59.121 47.619 0.00 0.00 0.00 4.17
520 528 2.154462 CTGGAATTTCGTGAAGCTGGT 58.846 47.619 0.00 0.00 0.00 4.00
521 529 1.470098 CCTGGAATTTCGTGAAGCTGG 59.530 52.381 0.00 0.00 0.00 4.85
522 530 2.417933 CTCCTGGAATTTCGTGAAGCTG 59.582 50.000 0.00 0.00 0.00 4.24
523 531 2.704572 CTCCTGGAATTTCGTGAAGCT 58.295 47.619 0.00 0.00 0.00 3.74
524 532 1.131315 GCTCCTGGAATTTCGTGAAGC 59.869 52.381 0.00 0.00 0.00 3.86
525 533 2.704572 AGCTCCTGGAATTTCGTGAAG 58.295 47.619 0.00 0.00 0.00 3.02
526 534 2.859165 AGCTCCTGGAATTTCGTGAA 57.141 45.000 0.00 0.00 0.00 3.18
527 535 3.432186 CCATAGCTCCTGGAATTTCGTGA 60.432 47.826 9.19 0.00 35.70 4.35
528 536 2.874701 CCATAGCTCCTGGAATTTCGTG 59.125 50.000 9.19 0.00 35.70 4.35
529 537 2.771943 TCCATAGCTCCTGGAATTTCGT 59.228 45.455 14.05 0.00 39.83 3.85
530 538 3.181461 ACTCCATAGCTCCTGGAATTTCG 60.181 47.826 16.43 8.84 42.12 3.46
531 539 4.141620 TGACTCCATAGCTCCTGGAATTTC 60.142 45.833 16.43 13.36 42.12 2.17
532 540 3.782523 TGACTCCATAGCTCCTGGAATTT 59.217 43.478 16.43 6.45 42.12 1.82
533 541 3.387962 TGACTCCATAGCTCCTGGAATT 58.612 45.455 16.43 8.47 42.12 2.17
534 542 2.971330 CTGACTCCATAGCTCCTGGAAT 59.029 50.000 16.43 8.79 42.12 3.01
535 543 2.392662 CTGACTCCATAGCTCCTGGAA 58.607 52.381 16.43 4.32 42.12 3.53
536 544 1.412217 CCTGACTCCATAGCTCCTGGA 60.412 57.143 15.24 15.24 40.49 3.86
537 545 1.047002 CCTGACTCCATAGCTCCTGG 58.953 60.000 8.63 8.63 34.93 4.45
538 546 2.079170 TCCTGACTCCATAGCTCCTG 57.921 55.000 0.00 0.00 0.00 3.86
539 547 2.856760 TTCCTGACTCCATAGCTCCT 57.143 50.000 0.00 0.00 0.00 3.69
540 548 4.562552 GCTATTTCCTGACTCCATAGCTCC 60.563 50.000 0.00 0.00 39.42 4.70
541 549 4.283212 AGCTATTTCCTGACTCCATAGCTC 59.717 45.833 6.23 0.00 46.30 4.09
542 550 4.230455 AGCTATTTCCTGACTCCATAGCT 58.770 43.478 6.23 6.23 45.08 3.32
543 551 4.314121 CAGCTATTTCCTGACTCCATAGC 58.686 47.826 0.00 0.00 41.76 2.97
544 552 4.040217 AGCAGCTATTTCCTGACTCCATAG 59.960 45.833 0.00 0.00 32.03 2.23
545 553 3.969976 AGCAGCTATTTCCTGACTCCATA 59.030 43.478 0.00 0.00 32.03 2.74
546 554 2.776536 AGCAGCTATTTCCTGACTCCAT 59.223 45.455 0.00 0.00 32.03 3.41
547 555 2.169352 GAGCAGCTATTTCCTGACTCCA 59.831 50.000 0.00 0.00 32.40 3.86
548 556 2.484594 GGAGCAGCTATTTCCTGACTCC 60.485 54.545 0.00 12.56 41.61 3.85
549 557 2.801342 CGGAGCAGCTATTTCCTGACTC 60.801 54.545 0.00 0.00 35.08 3.36
550 558 1.137872 CGGAGCAGCTATTTCCTGACT 59.862 52.381 0.00 0.00 32.03 3.41
551 559 1.576356 CGGAGCAGCTATTTCCTGAC 58.424 55.000 0.00 0.00 32.03 3.51
574 582 0.827368 GGTGGGGTTGCAGTTGAAAA 59.173 50.000 0.00 0.00 0.00 2.29
575 583 0.324738 TGGTGGGGTTGCAGTTGAAA 60.325 50.000 0.00 0.00 0.00 2.69
576 584 0.324738 TTGGTGGGGTTGCAGTTGAA 60.325 50.000 0.00 0.00 0.00 2.69
577 585 1.040339 GTTGGTGGGGTTGCAGTTGA 61.040 55.000 0.00 0.00 0.00 3.18
578 586 1.042559 AGTTGGTGGGGTTGCAGTTG 61.043 55.000 0.00 0.00 0.00 3.16
579 587 0.755327 GAGTTGGTGGGGTTGCAGTT 60.755 55.000 0.00 0.00 0.00 3.16
580 588 1.152756 GAGTTGGTGGGGTTGCAGT 60.153 57.895 0.00 0.00 0.00 4.40
581 589 1.903404 GGAGTTGGTGGGGTTGCAG 60.903 63.158 0.00 0.00 0.00 4.41
582 590 2.197324 GGAGTTGGTGGGGTTGCA 59.803 61.111 0.00 0.00 0.00 4.08
583 591 2.983592 CGGAGTTGGTGGGGTTGC 60.984 66.667 0.00 0.00 0.00 4.17
584 592 2.282180 CCGGAGTTGGTGGGGTTG 60.282 66.667 0.00 0.00 0.00 3.77
585 593 3.576259 CCCGGAGTTGGTGGGGTT 61.576 66.667 0.73 0.00 39.39 4.11
586 594 4.585216 TCCCGGAGTTGGTGGGGT 62.585 66.667 0.73 0.00 43.50 4.95
587 595 3.717294 CTCCCGGAGTTGGTGGGG 61.717 72.222 0.73 0.00 43.50 4.96
588 596 2.928396 ACTCCCGGAGTTGGTGGG 60.928 66.667 14.84 0.00 40.28 4.61
589 597 2.347490 CACTCCCGGAGTTGGTGG 59.653 66.667 18.03 2.33 41.37 4.61
590 598 2.172483 CTCCACTCCCGGAGTTGGTG 62.172 65.000 18.03 17.24 46.48 4.17
591 599 1.913762 CTCCACTCCCGGAGTTGGT 60.914 63.158 18.03 0.00 46.48 3.67
592 600 2.982130 CTCCACTCCCGGAGTTGG 59.018 66.667 18.03 20.14 46.48 3.77
597 605 2.203938 AAAGCCTCCACTCCCGGA 60.204 61.111 0.73 0.00 0.00 5.14
598 606 2.269241 GAAAGCCTCCACTCCCGG 59.731 66.667 0.00 0.00 0.00 5.73
599 607 2.269241 GGAAAGCCTCCACTCCCG 59.731 66.667 0.00 0.00 44.67 5.14
600 608 1.838073 TTCGGAAAGCCTCCACTCCC 61.838 60.000 3.50 0.00 45.74 4.30
601 609 0.673956 GTTCGGAAAGCCTCCACTCC 60.674 60.000 3.50 0.00 45.74 3.85
602 610 0.034896 TGTTCGGAAAGCCTCCACTC 59.965 55.000 3.50 0.00 45.74 3.51
603 611 0.035458 CTGTTCGGAAAGCCTCCACT 59.965 55.000 3.50 0.00 45.74 4.00
604 612 0.955919 CCTGTTCGGAAAGCCTCCAC 60.956 60.000 3.50 0.00 45.74 4.02
605 613 1.374947 CCTGTTCGGAAAGCCTCCA 59.625 57.895 3.50 0.00 45.74 3.86
606 614 1.377333 CCCTGTTCGGAAAGCCTCC 60.377 63.158 0.00 0.00 41.40 4.30
607 615 2.041115 GCCCTGTTCGGAAAGCCTC 61.041 63.158 0.00 0.00 33.16 4.70
608 616 2.034221 GCCCTGTTCGGAAAGCCT 59.966 61.111 0.00 0.00 33.16 4.58
609 617 2.193087 TAGGCCCTGTTCGGAAAGCC 62.193 60.000 0.00 12.07 37.76 4.35
610 618 0.322187 TTAGGCCCTGTTCGGAAAGC 60.322 55.000 0.00 0.00 33.16 3.51
611 619 1.003233 ACTTAGGCCCTGTTCGGAAAG 59.997 52.381 0.00 0.00 33.16 2.62
612 620 1.002773 GACTTAGGCCCTGTTCGGAAA 59.997 52.381 0.00 0.00 33.16 3.13
613 621 0.611714 GACTTAGGCCCTGTTCGGAA 59.388 55.000 0.00 0.00 33.16 4.30
614 622 1.262640 GGACTTAGGCCCTGTTCGGA 61.263 60.000 0.00 0.00 33.16 4.55
615 623 1.221021 GGACTTAGGCCCTGTTCGG 59.779 63.158 0.00 0.00 0.00 4.30
616 624 0.323629 TTGGACTTAGGCCCTGTTCG 59.676 55.000 0.00 0.00 0.00 3.95
617 625 1.351350 ACTTGGACTTAGGCCCTGTTC 59.649 52.381 0.00 0.00 0.00 3.18
618 626 1.351350 GACTTGGACTTAGGCCCTGTT 59.649 52.381 0.00 0.00 0.00 3.16
619 627 0.984995 GACTTGGACTTAGGCCCTGT 59.015 55.000 0.00 0.00 0.00 4.00
620 628 0.108138 CGACTTGGACTTAGGCCCTG 60.108 60.000 0.00 0.00 0.00 4.45
621 629 1.900545 GCGACTTGGACTTAGGCCCT 61.901 60.000 0.00 0.00 0.00 5.19
622 630 1.449778 GCGACTTGGACTTAGGCCC 60.450 63.158 0.00 0.00 0.00 5.80
623 631 1.810030 CGCGACTTGGACTTAGGCC 60.810 63.158 0.00 0.00 0.00 5.19
624 632 1.810030 CCGCGACTTGGACTTAGGC 60.810 63.158 8.23 0.00 0.00 3.93
625 633 0.179134 CTCCGCGACTTGGACTTAGG 60.179 60.000 8.23 0.00 0.00 2.69
626 634 0.526662 ACTCCGCGACTTGGACTTAG 59.473 55.000 8.23 0.00 0.00 2.18
627 635 0.242825 CACTCCGCGACTTGGACTTA 59.757 55.000 8.23 0.00 0.00 2.24
645 653 2.880890 GCAGCTTCCAAGTCTTTTCTCA 59.119 45.455 0.00 0.00 0.00 3.27
686 694 2.303022 GGGAGTGATGAGTTGACTGGAA 59.697 50.000 0.00 0.00 0.00 3.53
708 716 3.302675 CGTACGATTATCGGAGTTGACGA 60.303 47.826 19.05 0.00 45.59 4.20
722 733 1.066605 AGTGATTAGGCGCGTACGATT 59.933 47.619 21.65 2.92 43.93 3.34
809 823 2.435059 GGGCACGCTCTGAAGACC 60.435 66.667 0.00 0.00 0.00 3.85
834 848 6.380095 ACGTACTGTTTTTCTTTTGGCATA 57.620 33.333 0.00 0.00 0.00 3.14
835 849 5.257082 ACGTACTGTTTTTCTTTTGGCAT 57.743 34.783 0.00 0.00 0.00 4.40
836 850 4.705337 ACGTACTGTTTTTCTTTTGGCA 57.295 36.364 0.00 0.00 0.00 4.92
876 890 2.236146 TGACTAAGATGTGGTCGCCAAT 59.764 45.455 0.00 0.00 34.18 3.16
924 943 0.872388 GAGGTTTTCGTCGGTGCAAT 59.128 50.000 0.00 0.00 0.00 3.56
983 1002 6.374894 GTCGCCCATAGACTGTAGATATTACT 59.625 42.308 0.00 0.00 35.84 2.24
984 1003 6.553524 GTCGCCCATAGACTGTAGATATTAC 58.446 44.000 0.00 0.00 35.84 1.89
987 1006 3.690139 CGTCGCCCATAGACTGTAGATAT 59.310 47.826 0.00 0.00 36.53 1.63
989 1008 1.880675 CGTCGCCCATAGACTGTAGAT 59.119 52.381 0.00 0.00 36.53 1.98
990 1009 1.306148 CGTCGCCCATAGACTGTAGA 58.694 55.000 0.00 0.00 36.53 2.59
992 1011 1.731433 GCCGTCGCCCATAGACTGTA 61.731 60.000 0.00 0.00 36.53 2.74
994 1013 2.279517 GCCGTCGCCCATAGACTG 60.280 66.667 0.00 0.00 36.53 3.51
1082 1143 3.853330 CCATCTGTTCGGTGCGCG 61.853 66.667 0.00 0.00 0.00 6.86
1165 1226 2.683933 GACGAGGGCCAGGAGGAA 60.684 66.667 6.18 0.00 36.89 3.36
1246 1307 4.925861 GGAGATGCTCGGCAGGCC 62.926 72.222 0.00 0.00 43.65 5.19
1443 1504 3.366915 TCGATGCACCCGACGTGA 61.367 61.111 8.72 0.00 46.20 4.35
1595 1662 1.216710 CTCAACAGCCTCCTCGTCC 59.783 63.158 0.00 0.00 0.00 4.79
1610 1678 2.125552 CAAGATCCGTGCCGCTCA 60.126 61.111 0.00 0.00 0.00 4.26
1668 1736 0.108662 TCGAGCATGCACGTCAGAAT 60.109 50.000 31.44 3.61 0.00 2.40
1704 1778 4.509616 TGACGTTCCGATGGAATAAACAT 58.490 39.130 0.99 0.00 44.04 2.71
1721 1795 5.125356 TGATCAGCAAATGGATATTGACGT 58.875 37.500 0.00 0.00 0.00 4.34
1725 1799 7.413767 CCGAGTATGATCAGCAAATGGATATTG 60.414 40.741 0.09 0.00 0.00 1.90
1733 1807 2.138320 CGCCGAGTATGATCAGCAAAT 58.862 47.619 0.09 0.00 0.00 2.32
1738 1812 1.335182 AGACACGCCGAGTATGATCAG 59.665 52.381 0.09 0.00 0.00 2.90
1776 1850 5.378230 AATGAACTATCCATCTGCCAGAA 57.622 39.130 0.00 0.00 0.00 3.02
1787 1861 8.498054 TCAAGATGTCAAGAAATGAACTATCC 57.502 34.615 0.00 0.00 40.50 2.59
1792 1866 7.096312 GCAAACTCAAGATGTCAAGAAATGAAC 60.096 37.037 0.00 0.00 40.50 3.18
1794 1868 6.441274 GCAAACTCAAGATGTCAAGAAATGA 58.559 36.000 0.00 0.00 35.05 2.57
1808 1882 1.530013 CCCTGGCAGGCAAACTCAAG 61.530 60.000 28.51 7.15 32.73 3.02
1818 1892 1.478105 GCTTGTTATTTCCCTGGCAGG 59.522 52.381 27.04 27.04 34.30 4.85
1834 1908 7.809331 TCTTTTAACAATAAGATGCACAGCTTG 59.191 33.333 11.22 0.00 37.63 4.01
1836 1910 7.362401 CCTCTTTTAACAATAAGATGCACAGCT 60.362 37.037 0.00 0.00 30.57 4.24
1838 1912 7.121168 TCCCTCTTTTAACAATAAGATGCACAG 59.879 37.037 0.00 0.00 30.57 3.66
1851 1925 3.211045 GGCGCATATCCCTCTTTTAACA 58.789 45.455 10.83 0.00 0.00 2.41
1862 1936 0.679505 TGGACTAGTGGCGCATATCC 59.320 55.000 10.83 7.57 0.00 2.59
1865 1939 1.408969 TCATGGACTAGTGGCGCATA 58.591 50.000 10.83 0.00 0.00 3.14
1871 1945 8.642432 TCAATTATAGAGTTCATGGACTAGTGG 58.358 37.037 6.64 0.00 0.00 4.00
1889 1963 8.194104 AGCGGTTAAAACATGCAATCAATTATA 58.806 29.630 10.61 0.00 35.20 0.98
1890 1964 7.041107 AGCGGTTAAAACATGCAATCAATTAT 58.959 30.769 10.61 0.00 35.20 1.28
2001 2075 9.546428 CCATCCAAGGGTTTTCATATAATTTTC 57.454 33.333 0.00 0.00 0.00 2.29
2006 2080 4.898861 GGCCATCCAAGGGTTTTCATATAA 59.101 41.667 0.00 0.00 0.00 0.98
2012 2086 2.379005 CTAGGCCATCCAAGGGTTTTC 58.621 52.381 5.01 0.00 33.74 2.29
2026 2100 1.446366 GTGGTTCGATCCCTAGGCC 59.554 63.158 10.02 0.00 0.00 5.19
2069 2143 5.036117 TCTCCATGAATGTAAGGTAAGCC 57.964 43.478 0.00 0.00 0.00 4.35
2080 2154 7.400599 TTTTTCTCCTGATTCTCCATGAATG 57.599 36.000 0.00 0.00 44.70 2.67
2206 2281 3.743521 GTGATATGAAGTGGGCTGCATA 58.256 45.455 0.50 0.00 44.87 3.14
2207 2282 2.579873 GTGATATGAAGTGGGCTGCAT 58.420 47.619 0.50 0.00 43.29 3.96
2208 2283 1.743431 CGTGATATGAAGTGGGCTGCA 60.743 52.381 0.50 0.00 34.14 4.41
2209 2284 0.940126 CGTGATATGAAGTGGGCTGC 59.060 55.000 0.00 0.00 0.00 5.25
2210 2285 2.315925 ACGTGATATGAAGTGGGCTG 57.684 50.000 0.00 0.00 0.00 4.85
2211 2286 3.296854 TCTACGTGATATGAAGTGGGCT 58.703 45.455 0.00 0.00 0.00 5.19
2212 2287 3.728076 TCTACGTGATATGAAGTGGGC 57.272 47.619 0.00 0.00 0.00 5.36
2213 2288 5.842907 TGATTCTACGTGATATGAAGTGGG 58.157 41.667 0.00 0.00 0.00 4.61
2214 2289 7.203218 TCTTGATTCTACGTGATATGAAGTGG 58.797 38.462 0.00 0.00 0.00 4.00
2215 2290 7.918033 ACTCTTGATTCTACGTGATATGAAGTG 59.082 37.037 0.00 2.39 0.00 3.16
2216 2291 7.918033 CACTCTTGATTCTACGTGATATGAAGT 59.082 37.037 0.00 0.00 0.00 3.01
2217 2292 7.380870 CCACTCTTGATTCTACGTGATATGAAG 59.619 40.741 0.00 0.00 0.00 3.02
2218 2293 7.068226 TCCACTCTTGATTCTACGTGATATGAA 59.932 37.037 0.00 0.00 0.00 2.57
2219 2294 6.546034 TCCACTCTTGATTCTACGTGATATGA 59.454 38.462 0.00 0.00 0.00 2.15
2220 2295 6.739112 TCCACTCTTGATTCTACGTGATATG 58.261 40.000 0.00 0.00 0.00 1.78
2221 2296 6.961360 TCCACTCTTGATTCTACGTGATAT 57.039 37.500 0.00 0.00 0.00 1.63
2222 2297 6.769134 TTCCACTCTTGATTCTACGTGATA 57.231 37.500 0.00 0.00 0.00 2.15
2223 2298 5.661056 TTCCACTCTTGATTCTACGTGAT 57.339 39.130 0.00 0.00 0.00 3.06
2224 2299 5.661056 ATTCCACTCTTGATTCTACGTGA 57.339 39.130 0.00 0.00 0.00 4.35
2225 2300 6.980978 ACATATTCCACTCTTGATTCTACGTG 59.019 38.462 0.00 0.00 0.00 4.49
2226 2301 7.113658 ACATATTCCACTCTTGATTCTACGT 57.886 36.000 0.00 0.00 0.00 3.57
2261 2336 7.372451 TCACTTTTATACAGTCCAAAATCCG 57.628 36.000 0.00 0.00 0.00 4.18
2364 2439 2.422276 ACGCTTTTGCCACTCAAATC 57.578 45.000 0.00 0.00 43.53 2.17
2365 2440 2.100584 TGAACGCTTTTGCCACTCAAAT 59.899 40.909 0.00 0.00 43.53 2.32
2366 2441 1.474478 TGAACGCTTTTGCCACTCAAA 59.526 42.857 0.00 0.00 43.93 2.69
2382 2457 8.063630 CCATTGCAATGTTTTAGAACTTTGAAC 58.936 33.333 31.87 10.32 46.08 3.18
2446 2521 4.162320 TGCAGCTTACCTTATAGCTTGTCT 59.838 41.667 0.00 0.00 45.03 3.41
2485 2560 4.807304 TCCTGACTACTCAAACACGAAAAC 59.193 41.667 0.00 0.00 0.00 2.43
2501 2576 2.201921 TAGCAGTCGACTTCCTGACT 57.798 50.000 17.26 9.01 45.98 3.41
2506 2581 2.961526 TGGATTAGCAGTCGACTTCC 57.038 50.000 21.38 21.38 0.00 3.46
2507 2582 3.126831 CCATGGATTAGCAGTCGACTTC 58.873 50.000 17.26 11.95 0.00 3.01
2508 2583 2.501723 ACCATGGATTAGCAGTCGACTT 59.498 45.455 21.47 4.98 0.00 3.01
2515 2590 1.753930 TGTGCACCATGGATTAGCAG 58.246 50.000 21.47 0.00 35.66 4.24
2528 2603 8.608317 ACAAAAATTAAAACCTATGTTGTGCAC 58.392 29.630 10.75 10.75 34.13 4.57
2608 2683 4.947388 TGGCTTACCACTCAAATATCAACC 59.053 41.667 0.00 0.00 42.67 3.77
2619 2694 2.615747 GGAAAGGTCTGGCTTACCACTC 60.616 54.545 10.74 6.62 42.67 3.51
2647 2722 3.260475 TGATATGAACCCAGGTCGTTG 57.740 47.619 0.00 0.00 0.00 4.10
2652 2727 4.718961 GCAAGTATGATATGAACCCAGGT 58.281 43.478 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.