Multiple sequence alignment - TraesCS6A01G054900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G054900 chr6A 100.000 2632 0 0 1 2632 28430919 28433550 0.000000e+00 4861.0
1 TraesCS6A01G054900 chr6A 98.889 270 3 0 916 1185 31124630 31124361 1.420000e-132 483.0
2 TraesCS6A01G054900 chr6A 87.619 210 18 7 2427 2632 31119398 31119193 1.220000e-58 237.0
3 TraesCS6A01G054900 chr6B 91.715 1738 113 16 900 2632 49765901 49767612 0.000000e+00 2383.0
4 TraesCS6A01G054900 chr6B 90.879 1217 85 11 1065 2266 49412080 49410875 0.000000e+00 1609.0
5 TraesCS6A01G054900 chr6B 90.909 1001 58 15 1 983 49414459 49413474 0.000000e+00 1314.0
6 TraesCS6A01G054900 chr6B 86.667 720 51 17 60 765 49763592 49764280 0.000000e+00 756.0
7 TraesCS6A01G054900 chr6B 87.970 266 27 3 943 1204 49902599 49902863 2.540000e-80 309.0
8 TraesCS6A01G054900 chr6B 80.663 181 25 5 2461 2632 49881145 49881324 5.910000e-27 132.0
9 TraesCS6A01G054900 chr6B 80.503 159 20 5 2461 2609 49667787 49667944 7.700000e-21 111.0
10 TraesCS6A01G054900 chr6D 89.907 1080 76 19 1576 2632 27121082 27122151 0.000000e+00 1360.0
11 TraesCS6A01G054900 chr6D 89.388 490 22 13 359 841 27120610 27121076 8.110000e-165 590.0
12 TraesCS6A01G054900 chr6D 80.625 480 70 9 945 1405 27299909 27300384 1.500000e-92 350.0
13 TraesCS6A01G054900 chr6D 78.947 513 78 14 912 1405 27177528 27178029 3.270000e-84 322.0
14 TraesCS6A01G054900 chr6D 77.263 475 82 13 934 1389 27152027 27152494 3.360000e-64 255.0
15 TraesCS6A01G054900 chr6D 90.052 191 18 1 1 191 27119629 27119818 2.020000e-61 246.0
16 TraesCS6A01G054900 chr6D 86.473 207 27 1 2427 2632 27307381 27307587 2.640000e-55 226.0
17 TraesCS6A01G054900 chrUn 86.058 208 25 4 2427 2632 241641671 241641466 1.230000e-53 220.0
18 TraesCS6A01G054900 chrUn 86.058 208 25 4 2427 2632 297914518 297914723 1.230000e-53 220.0
19 TraesCS6A01G054900 chrUn 84.541 207 31 1 2427 2632 76835626 76835420 1.240000e-48 204.0
20 TraesCS6A01G054900 chrUn 84.541 207 31 1 2427 2632 241639703 241639497 1.240000e-48 204.0
21 TraesCS6A01G054900 chrUn 85.897 78 10 1 599 675 112248631 112248708 6.040000e-12 82.4
22 TraesCS6A01G054900 chrUn 92.453 53 4 0 2300 2352 473483938 473483990 2.810000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G054900 chr6A 28430919 28433550 2631 False 4861.0 4861 100.000000 1 2632 1 chr6A.!!$F1 2631
1 TraesCS6A01G054900 chr6B 49763592 49767612 4020 False 1569.5 2383 89.191000 60 2632 2 chr6B.!!$F4 2572
2 TraesCS6A01G054900 chr6B 49410875 49414459 3584 True 1461.5 1609 90.894000 1 2266 2 chr6B.!!$R1 2265
3 TraesCS6A01G054900 chr6D 27119629 27122151 2522 False 732.0 1360 89.782333 1 2632 3 chr6D.!!$F5 2631
4 TraesCS6A01G054900 chr6D 27177528 27178029 501 False 322.0 322 78.947000 912 1405 1 chr6D.!!$F2 493
5 TraesCS6A01G054900 chrUn 241639497 241641671 2174 True 212.0 220 85.299500 2427 2632 2 chrUn.!!$R2 205

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 2943 0.445436 CAGCTTTAAGGTGAGCAGCG 59.555 55.0 18.07 0.0 45.98 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2400 5908 2.584492 TCTACATCAGCACATGTCGG 57.416 50.0 0.0 0.0 38.07 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.574006 TGAGCAAAGTCATCCAAGCT 57.426 45.000 0.00 0.00 34.61 3.74
111 112 6.547141 TCAGAACAGAACCAGACAAATTCATT 59.453 34.615 0.00 0.00 0.00 2.57
151 153 5.091261 AGGACATAAGCAGAAATTCGACT 57.909 39.130 0.00 0.00 0.00 4.18
207 359 8.495148 ACACAATCAAAAGAAAACAGTGAAAAC 58.505 29.630 0.00 0.00 0.00 2.43
231 387 2.159986 GCGCATGCAAAATACAACACAC 60.160 45.455 19.57 0.00 42.15 3.82
288 444 3.745799 ACGATAATCACACACACCCAAA 58.254 40.909 0.00 0.00 0.00 3.28
304 460 2.529151 CCAAAACACTGAAGCACACAC 58.471 47.619 0.00 0.00 0.00 3.82
305 461 2.094803 CCAAAACACTGAAGCACACACA 60.095 45.455 0.00 0.00 0.00 3.72
346 502 4.646945 TCAAGTTCAAACATTAGCCAACCA 59.353 37.500 0.00 0.00 0.00 3.67
347 503 4.584327 AGTTCAAACATTAGCCAACCAC 57.416 40.909 0.00 0.00 0.00 4.16
475 1104 7.766219 ATTGCAAACAATTCATAAGAGATGC 57.234 32.000 1.71 0.00 44.21 3.91
592 1226 9.454585 CAATAGTTTTTACTGATATGTGCCATG 57.545 33.333 0.00 0.00 0.00 3.66
593 1227 5.894807 AGTTTTTACTGATATGTGCCATGC 58.105 37.500 0.00 0.00 0.00 4.06
595 1229 6.097270 AGTTTTTACTGATATGTGCCATGCAT 59.903 34.615 0.00 0.00 41.91 3.96
627 1261 8.970691 AAACAGTATTGTATGAAAACTGCATC 57.029 30.769 0.00 0.00 40.94 3.91
726 1360 7.592938 TGCAACTGTCTAATCAGGTTATTTTG 58.407 34.615 0.00 0.00 39.48 2.44
728 1362 6.759497 ACTGTCTAATCAGGTTATTTTGGC 57.241 37.500 0.00 0.00 39.48 4.52
730 1364 6.891908 ACTGTCTAATCAGGTTATTTTGGCAT 59.108 34.615 0.00 0.00 39.48 4.40
731 1365 7.099266 TGTCTAATCAGGTTATTTTGGCATG 57.901 36.000 0.00 0.00 0.00 4.06
733 1367 7.395772 TGTCTAATCAGGTTATTTTGGCATGAA 59.604 33.333 0.00 0.00 0.00 2.57
742 1381 7.553760 AGGTTATTTTGGCATGAAATTCCATTC 59.446 33.333 0.00 0.00 0.00 2.67
756 1395 2.546778 TCCATTCGAGTTACATTCGGC 58.453 47.619 0.00 0.00 38.54 5.54
883 2943 0.445436 CAGCTTTAAGGTGAGCAGCG 59.555 55.000 18.07 0.00 45.98 5.18
886 2946 1.673033 GCTTTAAGGTGAGCAGCGAGA 60.673 52.381 0.00 0.00 38.73 4.04
915 3042 3.010138 AGCACAATTGGGTACAGGTACAT 59.990 43.478 9.94 0.00 37.78 2.29
930 3057 4.214119 CAGGTACATGACACTCCAACTTTG 59.786 45.833 0.00 0.00 0.00 2.77
941 3068 1.241165 CCAACTTTGGGTTACGGTCC 58.759 55.000 0.00 0.00 44.70 4.46
976 3106 7.631377 GCTGGAAAATAGTGAAATGCTATTGGT 60.631 37.037 0.00 0.00 38.64 3.67
977 3107 7.771183 TGGAAAATAGTGAAATGCTATTGGTC 58.229 34.615 0.00 0.00 38.64 4.02
993 3123 6.093633 GCTATTGGTCCCATTACGAATTATCC 59.906 42.308 0.00 0.00 31.37 2.59
995 3125 3.388676 TGGTCCCATTACGAATTATCCGT 59.611 43.478 0.00 0.00 43.26 4.69
1077 4536 3.425014 AGCCACCAACCCACCACA 61.425 61.111 0.00 0.00 0.00 4.17
1257 4737 1.971695 GTGCTACCCTGGGTGCAAC 60.972 63.158 31.02 23.63 39.76 4.17
1325 4815 1.202313 CCCCTTCTTCGACGACATCTC 60.202 57.143 0.00 0.00 0.00 2.75
1348 4838 3.058160 CCCTTCGCACCTGCTTGG 61.058 66.667 0.00 0.00 42.93 3.61
1409 4899 3.259064 CGTTGACCGGTAAGACATGAAT 58.741 45.455 7.34 0.00 0.00 2.57
1549 5040 1.303309 GTTCTGATGATCTTGGGCCG 58.697 55.000 0.00 0.00 0.00 6.13
1562 5053 2.125106 GGCCGTTTCGCAGATCCT 60.125 61.111 0.00 0.00 35.04 3.24
1567 5058 1.673033 CCGTTTCGCAGATCCTGAAGT 60.673 52.381 0.00 0.00 35.04 3.01
1574 5065 3.006430 TCGCAGATCCTGAAGTTTGTGTA 59.994 43.478 0.00 0.00 32.44 2.90
1577 5068 4.390297 GCAGATCCTGAAGTTTGTGTAGAC 59.610 45.833 0.00 0.00 32.44 2.59
1580 5071 4.659111 TCCTGAAGTTTGTGTAGACGAA 57.341 40.909 0.00 0.00 0.00 3.85
1640 5134 4.894784 ACGAGGAACATTGAAGAGCTAAA 58.105 39.130 0.00 0.00 0.00 1.85
1651 5145 0.173708 AGAGCTAAAAGCCGGTCGAG 59.826 55.000 1.90 0.00 43.77 4.04
1654 5148 1.696832 GCTAAAAGCCGGTCGAGCAG 61.697 60.000 15.89 4.15 34.48 4.24
1655 5149 1.696832 CTAAAAGCCGGTCGAGCAGC 61.697 60.000 14.83 14.83 0.00 5.25
1656 5150 2.167398 TAAAAGCCGGTCGAGCAGCT 62.167 55.000 19.19 19.19 37.10 4.24
1657 5151 4.749310 AAGCCGGTCGAGCAGCTG 62.749 66.667 24.74 10.11 35.30 4.24
1660 5154 4.056125 CCGGTCGAGCAGCTGTGA 62.056 66.667 16.64 8.44 0.00 3.58
1661 5155 2.182791 CGGTCGAGCAGCTGTGAT 59.817 61.111 16.64 1.28 0.00 3.06
1663 5157 1.690283 CGGTCGAGCAGCTGTGATTG 61.690 60.000 16.64 6.13 0.00 2.67
1664 5158 1.423056 GTCGAGCAGCTGTGATTGC 59.577 57.895 16.64 0.00 40.57 3.56
1670 5164 3.677527 AGCTGTGATTGCTGCACC 58.322 55.556 0.00 0.00 39.56 5.01
1703 5197 3.284617 AGCTGTGATTGCTGCATCAATA 58.715 40.909 15.36 0.33 39.56 1.90
1728 5222 8.504812 AAATAAAATGTGTTTTGCTTCCTTGT 57.495 26.923 0.00 0.00 38.01 3.16
1878 5372 7.455641 TTTTGCGAGGATTAAGGAACATAAA 57.544 32.000 0.00 0.00 0.00 1.40
1992 5487 3.629398 CAGAACCAGATAAGCATTCACCC 59.371 47.826 0.00 0.00 0.00 4.61
2012 5507 5.180117 CACCCAAAACAAACACACAAAATGA 59.820 36.000 0.00 0.00 0.00 2.57
2023 5518 9.169468 CAAACACACAAAATGAGACATAAGTAC 57.831 33.333 0.00 0.00 0.00 2.73
2060 5555 0.172803 CTCCCCACGTAGTACAGCAC 59.827 60.000 0.38 0.00 41.61 4.40
2061 5556 0.251474 TCCCCACGTAGTACAGCACT 60.251 55.000 0.38 0.00 41.61 4.40
2072 5568 3.206150 AGTACAGCACTGAACACAAAGG 58.794 45.455 4.31 0.00 35.62 3.11
2076 5572 3.509575 ACAGCACTGAACACAAAGGAAAA 59.490 39.130 4.31 0.00 0.00 2.29
2079 5575 3.737972 GCACTGAACACAAAGGAAAAGGG 60.738 47.826 0.00 0.00 0.00 3.95
2102 5598 5.807011 GGGAAAAGATGAACACATGCATAAC 59.193 40.000 0.00 0.00 0.00 1.89
2103 5599 6.389091 GGAAAAGATGAACACATGCATAACA 58.611 36.000 0.00 0.00 0.00 2.41
2111 5614 4.319139 ACACATGCATAACACAAGCAAA 57.681 36.364 0.00 0.00 42.15 3.68
2112 5615 4.050553 ACACATGCATAACACAAGCAAAC 58.949 39.130 0.00 0.00 42.15 2.93
2125 5632 5.984926 ACACAAGCAAACGATCAATTGAAAT 59.015 32.000 13.09 0.00 0.00 2.17
2129 5636 7.326789 ACAAGCAAACGATCAATTGAAATGTAG 59.673 33.333 13.09 8.61 0.00 2.74
2163 5670 3.135348 AGCAAGCTATCAAGGCACATCTA 59.865 43.478 0.00 0.00 0.00 1.98
2164 5671 4.070716 GCAAGCTATCAAGGCACATCTAT 58.929 43.478 0.00 0.00 0.00 1.98
2400 5908 9.764363 AGAAAACCAACATTAGAAAAAGATTCC 57.236 29.630 0.00 0.00 0.00 3.01
2405 5913 6.072175 CCAACATTAGAAAAAGATTCCCGACA 60.072 38.462 0.00 0.00 0.00 4.35
2441 5949 2.213499 AGAAAACAGGTCGCTTCACAG 58.787 47.619 0.00 0.00 0.00 3.66
2552 6078 2.002586 CAGTAGGCACCATCTTGTTCG 58.997 52.381 0.00 0.00 0.00 3.95
2619 6146 6.711645 CCTGAAATTGTGGGTCATTTGATTTT 59.288 34.615 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.399004 CCTTTGTTGGGATTCACACAAA 57.601 40.909 12.77 12.77 43.93 2.83
111 112 4.346709 TGTCCTATTTTGTGAGTCTGACCA 59.653 41.667 3.76 0.00 0.00 4.02
163 165 5.491323 TGTGTCCCATGTTGTATGAGTAA 57.509 39.130 0.00 0.00 0.00 2.24
207 359 1.578915 GTTGTATTTTGCATGCGCTCG 59.421 47.619 14.09 0.00 39.64 5.03
231 387 0.321210 TGTACAATGCAGGGACACGG 60.321 55.000 2.21 0.00 0.00 4.94
265 421 2.300437 TGGGTGTGTGTGATTATCGTCA 59.700 45.455 0.00 0.00 0.00 4.35
288 444 1.094785 GGTGTGTGTGCTTCAGTGTT 58.905 50.000 0.00 0.00 0.00 3.32
304 460 5.181245 ACTTGAATTCTTTCATACACGGGTG 59.819 40.000 0.00 0.00 41.38 4.61
305 461 5.313712 ACTTGAATTCTTTCATACACGGGT 58.686 37.500 7.05 0.00 41.38 5.28
346 502 3.776969 TGAGATATGGTGAAGGCTTCAGT 59.223 43.478 29.22 19.61 41.01 3.41
347 503 4.412796 TGAGATATGGTGAAGGCTTCAG 57.587 45.455 29.22 0.00 41.01 3.02
377 1001 8.769359 AGCAATACTACTGGGATAGTTTTACTT 58.231 33.333 0.00 0.00 40.89 2.24
378 1002 8.320338 AGCAATACTACTGGGATAGTTTTACT 57.680 34.615 0.00 0.00 40.89 2.24
397 1021 9.889128 TTGCATATATTCAGTAGCATAGCAATA 57.111 29.630 0.00 0.00 32.87 1.90
451 1080 6.759827 GGCATCTCTTATGAATTGTTTGCAAT 59.240 34.615 0.00 0.00 46.38 3.56
475 1104 4.201657 TGTGAAGTATCTGCATGGAATGG 58.798 43.478 0.00 0.00 46.86 3.16
627 1261 3.751175 TGCTGATGTAGAAAGAAAACCGG 59.249 43.478 0.00 0.00 0.00 5.28
726 1360 4.376340 AACTCGAATGGAATTTCATGCC 57.624 40.909 0.00 0.00 36.07 4.40
728 1362 7.374228 CGAATGTAACTCGAATGGAATTTCATG 59.626 37.037 0.00 0.00 36.07 3.07
730 1364 6.183360 CCGAATGTAACTCGAATGGAATTTCA 60.183 38.462 0.00 0.00 36.07 2.69
731 1365 6.192360 CCGAATGTAACTCGAATGGAATTTC 58.808 40.000 0.00 0.00 36.07 2.17
733 1367 4.035208 GCCGAATGTAACTCGAATGGAATT 59.965 41.667 0.00 0.00 40.93 2.17
756 1395 7.223582 CACCTCTATACAGCTTGATACAAGTTG 59.776 40.741 20.52 20.52 35.09 3.16
883 2943 2.749621 CCCAATTGTGCTAGTGGTTCTC 59.250 50.000 4.43 0.00 0.00 2.87
886 2946 2.675658 ACCCAATTGTGCTAGTGGTT 57.324 45.000 4.43 0.00 0.00 3.67
930 3057 2.094906 GCAAATCAAAGGACCGTAACCC 60.095 50.000 0.00 0.00 0.00 4.11
932 3059 3.365969 CCAGCAAATCAAAGGACCGTAAC 60.366 47.826 0.00 0.00 0.00 2.50
941 3068 8.592105 TTTCACTATTTTCCAGCAAATCAAAG 57.408 30.769 0.00 0.00 0.00 2.77
976 3106 3.395639 GCACGGATAATTCGTAATGGGA 58.604 45.455 0.00 0.00 38.94 4.37
977 3107 2.482721 GGCACGGATAATTCGTAATGGG 59.517 50.000 0.00 0.00 38.94 4.00
993 3123 2.022808 GCAATATCGACATTGGCACG 57.977 50.000 17.59 0.00 36.58 5.34
1068 4527 2.595095 CTGTGGTGTGTGGTGGGT 59.405 61.111 0.00 0.00 0.00 4.51
1077 4536 2.630580 GAGAAGAGAACTCCTGTGGTGT 59.369 50.000 0.00 0.00 0.00 4.16
1100 4559 0.999406 CTTGGCCTCACAATCGTACG 59.001 55.000 9.53 9.53 0.00 3.67
1156 4636 2.673523 GAGGAGCATGCACAGGGT 59.326 61.111 21.98 0.00 0.00 4.34
1257 4737 2.669569 CACGGAGGGGTGCTGTTG 60.670 66.667 0.00 0.00 0.00 3.33
1276 4766 1.499056 CGCACATCACCTTGCAGAC 59.501 57.895 0.00 0.00 38.76 3.51
1348 4838 3.712881 GTCCGTGTTGCAGGCGTC 61.713 66.667 6.04 0.00 0.00 5.19
1366 4856 1.077930 CTGGCAGGTCACAGATGGG 60.078 63.158 6.61 0.00 36.86 4.00
1393 4883 6.479972 TTCTATCATTCATGTCTTACCGGT 57.520 37.500 13.98 13.98 0.00 5.28
1549 5040 3.251004 ACAAACTTCAGGATCTGCGAAAC 59.749 43.478 0.00 0.00 0.00 2.78
1562 5053 4.377021 AGCATTCGTCTACACAAACTTCA 58.623 39.130 0.00 0.00 0.00 3.02
1567 5058 5.699001 ACATTGTAGCATTCGTCTACACAAA 59.301 36.000 2.70 0.00 44.09 2.83
1574 5065 3.002791 CCACACATTGTAGCATTCGTCT 58.997 45.455 0.00 0.00 0.00 4.18
1577 5068 1.401552 CCCCACACATTGTAGCATTCG 59.598 52.381 0.00 0.00 0.00 3.34
1580 5071 1.031571 CGCCCCACACATTGTAGCAT 61.032 55.000 0.00 0.00 0.00 3.79
1616 5107 1.656095 GCTCTTCAATGTTCCTCGTCG 59.344 52.381 0.00 0.00 0.00 5.12
1640 5134 4.749310 CAGCTGCTCGACCGGCTT 62.749 66.667 11.43 0.00 44.78 4.35
1654 5148 1.211969 CAGGTGCAGCAATCACAGC 59.788 57.895 19.63 0.00 36.22 4.40
1655 5149 1.132453 CATCAGGTGCAGCAATCACAG 59.868 52.381 19.63 0.00 36.22 3.66
1656 5150 1.170442 CATCAGGTGCAGCAATCACA 58.830 50.000 19.63 0.00 36.22 3.58
1657 5151 1.131883 GACATCAGGTGCAGCAATCAC 59.868 52.381 19.63 1.13 0.00 3.06
1658 5152 1.456296 GACATCAGGTGCAGCAATCA 58.544 50.000 19.63 0.00 0.00 2.57
1659 5153 0.376152 CGACATCAGGTGCAGCAATC 59.624 55.000 19.63 6.73 0.00 2.67
1660 5154 0.036105 TCGACATCAGGTGCAGCAAT 60.036 50.000 19.63 8.33 0.00 3.56
1661 5155 0.671472 CTCGACATCAGGTGCAGCAA 60.671 55.000 19.63 6.03 0.00 3.91
1663 5157 2.459442 GCTCGACATCAGGTGCAGC 61.459 63.158 8.11 8.11 0.00 5.25
1664 5158 1.079612 TGCTCGACATCAGGTGCAG 60.080 57.895 0.00 0.00 0.00 4.41
1665 5159 1.079612 CTGCTCGACATCAGGTGCA 60.080 57.895 0.00 0.00 0.00 4.57
1666 5160 2.459442 GCTGCTCGACATCAGGTGC 61.459 63.158 0.00 0.00 0.00 5.01
1667 5161 1.217511 AGCTGCTCGACATCAGGTG 59.782 57.895 0.00 0.00 39.29 4.00
1668 5162 1.217511 CAGCTGCTCGACATCAGGT 59.782 57.895 0.00 4.13 41.17 4.00
1669 5163 1.082679 CACAGCTGCTCGACATCAGG 61.083 60.000 15.27 0.00 0.00 3.86
1670 5164 0.108945 TCACAGCTGCTCGACATCAG 60.109 55.000 15.27 1.41 0.00 2.90
1703 5197 8.504812 ACAAGGAAGCAAAACACATTTTATTT 57.495 26.923 0.00 0.00 35.79 1.40
1728 5222 9.515020 GATTCACAAATTTTCTCACAAGTGTTA 57.485 29.630 0.00 0.00 0.00 2.41
1835 5329 9.528018 TCGCAAAAAGAAGATAAAGAATTTTGT 57.472 25.926 0.00 0.00 40.09 2.83
1983 5478 3.063316 GTGTGTTTGTTTTGGGTGAATGC 59.937 43.478 0.00 0.00 0.00 3.56
1992 5487 7.114882 TGTCTCATTTTGTGTGTTTGTTTTG 57.885 32.000 0.00 0.00 0.00 2.44
2012 5507 5.720202 TGCGTCAGATTTGTACTTATGTCT 58.280 37.500 0.00 0.00 0.00 3.41
2023 5518 3.557595 GGGAGTATTCTGCGTCAGATTTG 59.442 47.826 9.78 0.00 40.39 2.32
2060 5555 3.295973 TCCCCTTTTCCTTTGTGTTCAG 58.704 45.455 0.00 0.00 0.00 3.02
2061 5556 3.390175 TCCCCTTTTCCTTTGTGTTCA 57.610 42.857 0.00 0.00 0.00 3.18
2072 5568 5.529581 TGTGTTCATCTTTTCCCCTTTTC 57.470 39.130 0.00 0.00 0.00 2.29
2076 5572 2.827921 GCATGTGTTCATCTTTTCCCCT 59.172 45.455 0.00 0.00 31.15 4.79
2079 5575 6.308766 GTGTTATGCATGTGTTCATCTTTTCC 59.691 38.462 10.16 0.00 31.15 3.13
2102 5598 5.886715 TTTCAATTGATCGTTTGCTTGTG 57.113 34.783 9.40 0.00 0.00 3.33
2103 5599 5.984926 ACATTTCAATTGATCGTTTGCTTGT 59.015 32.000 9.40 0.91 0.00 3.16
2125 5632 9.314321 GATAGCTTGCTTCAATTAGTTACTACA 57.686 33.333 0.00 0.00 0.00 2.74
2129 5636 8.125448 CCTTGATAGCTTGCTTCAATTAGTTAC 58.875 37.037 15.13 0.00 0.00 2.50
2400 5908 2.584492 TCTACATCAGCACATGTCGG 57.416 50.000 0.00 0.00 38.07 4.79
2405 5913 6.072286 CCTGTTTTCTTTCTACATCAGCACAT 60.072 38.462 0.00 0.00 0.00 3.21
2441 5949 6.515272 TGTTGCTCATCTTTCTATTTTCCC 57.485 37.500 0.00 0.00 0.00 3.97
2472 5980 6.942976 ACCTTGGATCTTACACGAATTAGAA 58.057 36.000 0.00 0.00 0.00 2.10
2552 6078 7.228507 GCCAATTTTCCAATGGTATTAATTCCC 59.771 37.037 8.49 3.22 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.