AutoCloner

Multiple sequence alignment - TraesCS6A01G053700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G053700	chr6A	100.000	3038	0	0	1	3038	27764272	27767309	0.000000e+00	5611.0
1	TraesCS6A01G053700	chrUn	92.380	2559	140	29	402	2939	112252320	112254844	0.000000e+00	3594.0
2	TraesCS6A01G053700	chrUn	90.741	216	12	3	2	217	112251904	112252111	6.410000e-72	281.0
3	TraesCS6A01G053700	chrUn	91.304	161	12	2	241	401	112252103	112252261	5.100000e-53	219.0
4	TraesCS6A01G053700	chrUn	100.000	41	0	0	2960	3000	112254845	112254885	3.250000e-10	76.8
5	TraesCS6A01G053700	chr6B	92.142	1578	93	11	402	1962	48544524	48546087	0.000000e+00	2198.0
6	TraesCS6A01G053700	chr6B	86.754	921	61	27	2022	2901	48546086	48546986	0.000000e+00	968.0
7	TraesCS6A01G053700	chr6B	95.760	283	9	1	1	283	48544099	48544378	1.280000e-123	453.0
8	TraesCS6A01G053700	chr6B	95.000	100	3	2	2917	3014	48546973	48547072	4.060000e-34	156.0
9	TraesCS6A01G053700	chr6B	85.057	87	8	5	327	409	48544388	48544473	1.940000e-12	84.2
10	TraesCS6A01G053700	chr4D	86.166	1583	151	34	607	2155	1205313	1206861	0.000000e+00	1648.0
11	TraesCS6A01G053700	chr4D	76.875	160	20	9	112	257	1204970	1205126	1.170000e-09	75.0
12	TraesCS6A01G053700	chr4D	100.000	31	0	0	2417	2447	1221966	1221996	1.180000e-04	58.4
13	TraesCS6A01G053700	chr4A	83.651	1835	170	63	478	2242	603636184	603634410	0.000000e+00	1607.0
14	TraesCS6A01G053700	chr4B	90.169	651	56	2	756	1398	806334	805684	0.000000e+00	841.0
15	TraesCS6A01G053700	chr4B	82.663	796	96	21	1520	2304	672108	671344	0.000000e+00	667.0
16	TraesCS6A01G053700	chr4B	82.470	502	61	13	1442	1927	805677	805187	6.060000e-112	414.0
17	TraesCS6A01G053700	chr4B	84.091	132	16	4	119	250	806953	806827	4.110000e-24	122.0
18	TraesCS6A01G053700	chr4B	79.888	179	18	11	1926	2099	805088	804923	6.880000e-22	115.0
19	TraesCS6A01G053700	chr4B	92.982	57	4	0	2947	3003	804377	804321	1.940000e-12	84.2
20	TraesCS6A01G053700	chr7D	83.891	329	41	7	627	951	412486014	412486334	1.370000e-78	303.0
21	TraesCS6A01G053700	chr7D	84.713	157	13	8	119	274	412485671	412485817	2.440000e-31	147.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G053700	chr6A	27764272	27767309	3037	False	5611.00	5611	100.00000	1	3038	1	chr6A.!!$F1	3037
1	TraesCS6A01G053700	chrUn	112251904	112254885	2981	False	1042.70	3594	93.60625	2	3000	4	chrUn.!!$F1	2998
2	TraesCS6A01G053700	chr6B	48544099	48547072	2973	False	771.84	2198	90.94260	1	3014	5	chr6B.!!$F1	3013
3	TraesCS6A01G053700	chr4D	1204970	1206861	1891	False	861.50	1648	81.52050	112	2155	2	chr4D.!!$F2	2043
4	TraesCS6A01G053700	chr4A	603634410	603636184	1774	True	1607.00	1607	83.65100	478	2242	1	chr4A.!!$R1	1764
5	TraesCS6A01G053700	chr4B	671344	672108	764	True	667.00	667	82.66300	1520	2304	1	chr4B.!!$R1	784
6	TraesCS6A01G053700	chr4B	804321	806953	2632	True	315.24	841	85.92000	119	3003	5	chr4B.!!$R2	2884
7	TraesCS6A01G053700	chr7D	412485671	412486334	663	False	225.00	303	84.30200	119	951	2	chr7D.!!$F1	832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
657	875	1.209504	TCATTCTACCAGCTTTCCCCG	59.790	52.381	0.0	0.0	0.0	5.73	F
1166	1423	0.734253	CTTCGGAGGAAGTGCGTGAG	60.734	60.000	0.0	0.0	43.8	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1785	2080	0.260816	ACGGGGCTGTATAGTCAGGA	59.739	55.0	0.00	0.0	36.12	3.86	R
2658	3152	0.101040	TGTTCGGCGGAATACCTACG	59.899	55.0	7.21	0.0	34.05	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	5.492855	ACTAGTGACTGTGACTCTACTCT	57.507	43.478	2.42	0.00	0.00	3.24
322	432	6.976934	AATAAAATCCTGTTGTGAACACCT	57.023	33.333	2.46	0.00	36.25	4.00
378	498	9.981114	GCATACAAAATGCCTATAAATAAAGGT	57.019	29.630	0.00	0.00	39.01	3.50
502	708	5.422331	AGGTTCTTTAGCAGAGTAGTATGCA	59.578	40.000	18.83	2.95	43.79	3.96
512	718	5.738495	GCAGAGTAGTATGCACATCATCAGT	60.738	44.000	12.26	0.00	40.84	3.41
532	738	6.406370	TCAGTGGTTTGACACATAGGATTAG	58.594	40.000	0.00	0.00	43.72	1.73
567	778	7.658982	AGTCGCATAATCATCTCACAACATTAT	59.341	33.333	0.00	0.00	0.00	1.28
583	794	4.517285	ACATTATGTGGTGAGCTACTTGG	58.483	43.478	0.00	0.00	0.00	3.61
609	820	7.012138	GCATGGGCTTGAGAATGAGTATATATG	59.988	40.741	0.00	0.00	36.96	1.78
631	849	5.587289	TGTGTTGAACAGCAGTTATTTTCC	58.413	37.500	0.00	0.00	38.30	3.13
657	875	1.209504	TCATTCTACCAGCTTTCCCCG	59.790	52.381	0.00	0.00	0.00	5.73
715	934	6.908870	TGATTGATTCCTGAAGTTATGACG	57.091	37.500	0.00	0.00	0.00	4.35
769	1004	5.288804	TGCCAGACATGTTAAAAAGAAAGC	58.711	37.500	0.00	0.00	0.00	3.51
807	1046	6.016276	ACTCATAAACTCATCCAACAACCAAC	60.016	38.462	0.00	0.00	0.00	3.77
847	1092	6.491745	TCTCAAGCAAACACAAATGGGTATTA	59.508	34.615	0.00	0.00	0.00	0.98
1037	1294	7.691993	AGAGTAGCCTTTATAAATGGGAAGA	57.308	36.000	7.51	0.00	0.00	2.87
1112	1369	2.121948	TCAGGTAGCAGGAGCAATGAT	58.878	47.619	0.00	0.00	45.49	2.45
1131	1388	4.111577	TGATAGGGTTTTCCTCTCCATGT	58.888	43.478	0.00	0.00	44.06	3.21
1166	1423	0.734253	CTTCGGAGGAAGTGCGTGAG	60.734	60.000	0.00	0.00	43.80	3.51
1222	1479	2.742403	GGGCTGCACATTTTGGCA	59.258	55.556	0.50	0.00	38.52	4.92
1294	1551	2.202690	CGTCAATAGACCGCCGCA	60.203	61.111	0.00	0.00	41.87	5.69
1455	1715	9.132521	ACAATTCTATTGCTTTCTGAATTTTCG	57.867	29.630	0.00	0.00	35.84	3.46
1460	1720	8.349245	TCTATTGCTTTCTGAATTTTCGTTTGA	58.651	29.630	0.00	0.00	0.00	2.69
1499	1769	7.880713	TGCATGGACAGTAATAACTCAAAACTA	59.119	33.333	0.00	0.00	31.97	2.24
1837	2138	2.213499	GTATCCACAGTAGCACCATGC	58.787	52.381	0.00	0.00	45.46	4.06
1854	2155	2.620251	TGCTTCCCGTTGATATCCAG	57.380	50.000	0.00	0.00	0.00	3.86
1895	2196	2.378038	GAATTATTGGCACTGAGGGCA	58.622	47.619	9.72	0.46	42.10	5.36
1900	2201	0.253044	TTGGCACTGAGGGCATCTAC	59.747	55.000	9.72	0.00	43.37	2.59
1986	2393	5.009010	CCAGCAGTTCTCTTTTGTAATGTGT	59.991	40.000	0.00	0.00	0.00	3.72
2077	2494	3.274288	GAATCAAGCAGGGTGTAGAAGG	58.726	50.000	0.00	0.00	0.00	3.46
2345	2815	3.382546	GCATCAACTGGCTGAAACCATAT	59.617	43.478	0.00	0.00	39.54	1.78
2400	2872	7.422465	AAACATAACAATGATGGTGGCTAAT	57.578	32.000	0.00	0.00	0.00	1.73
2465	2937	7.985476	CAATACGTGGAATGGAAGTTAAGATT	58.015	34.615	0.00	0.00	0.00	2.40
2485	2957	7.814264	AGATTTGATTCAGTTCAACTCAACT	57.186	32.000	0.00	0.00	37.61	3.16
2486	2958	8.908786	AGATTTGATTCAGTTCAACTCAACTA	57.091	30.769	0.00	0.00	37.61	2.24
2530	3002	2.980233	AGACGCCAAACTGCCTGC	60.980	61.111	0.00	0.00	0.00	4.85
2628	3122	3.194542	TGCACGCCCTAATTAGCAAAATT	59.805	39.130	6.99	3.02	0.00	1.82
2648	3142	1.005156	CGGCCATGGTTTTTGTGGG	60.005	57.895	14.67	0.00	33.58	4.61
2655	3149	3.006430	CCATGGTTTTTGTGGGTTAGGAC	59.994	47.826	2.57	0.00	0.00	3.85
2656	3150	3.673543	TGGTTTTTGTGGGTTAGGACT	57.326	42.857	0.00	0.00	0.00	3.85
2657	3151	3.983821	TGGTTTTTGTGGGTTAGGACTT	58.016	40.909	0.00	0.00	0.00	3.01
2658	3152	3.955551	TGGTTTTTGTGGGTTAGGACTTC	59.044	43.478	0.00	0.00	0.00	3.01
2659	3153	3.004002	GGTTTTTGTGGGTTAGGACTTCG	59.996	47.826	0.00	0.00	0.00	3.79
2660	3154	3.564053	TTTTGTGGGTTAGGACTTCGT	57.436	42.857	0.00	0.00	0.00	3.85
2661	3155	4.686191	TTTTGTGGGTTAGGACTTCGTA	57.314	40.909	0.00	0.00	0.00	3.43
2664	3158	2.174360	GTGGGTTAGGACTTCGTAGGT	58.826	52.381	0.00	0.00	0.00	3.08
2671	3200	1.680207	AGGACTTCGTAGGTATTCCGC	59.320	52.381	0.00	0.00	39.05	5.54
2700	3229	3.629398	GGTTGAGTTCATGGTGGATGATC	59.371	47.826	0.00	0.00	40.92	2.92
2702	3231	2.173356	TGAGTTCATGGTGGATGATCCC	59.827	50.000	9.36	0.04	40.92	3.85
2707	3236	1.496001	CATGGTGGATGATCCCTGGAA	59.504	52.381	9.36	0.00	35.03	3.53
2718	3247	5.345307	TGATCCCTGGAATCAGAGATAGA	57.655	43.478	0.00	0.00	38.37	1.98
2788	3324	3.127533	GCAGCGAGGCATTCCGTT	61.128	61.111	0.00	0.00	37.47	4.44
2792	3328	2.038269	GCGAGGCATTCCGTTTCCA	61.038	57.895	0.00	0.00	37.47	3.53
2793	3329	1.582610	GCGAGGCATTCCGTTTCCAA	61.583	55.000	0.00	0.00	37.47	3.53
2794	3330	1.094785	CGAGGCATTCCGTTTCCAAT	58.905	50.000	0.00	0.00	37.47	3.16
2795	3331	1.064060	CGAGGCATTCCGTTTCCAATC	59.936	52.381	0.00	0.00	37.47	2.67
3004	3604	4.280929	GGGCTTCCAAGTACATTTCAACTT	59.719	41.667	0.00	0.00	36.38	2.66
3014	3614	6.998802	AGTACATTTCAACTTAGCTCTGACT	58.001	36.000	0.00	0.00	0.00	3.41
3015	3615	8.123639	AGTACATTTCAACTTAGCTCTGACTA	57.876	34.615	0.00	0.00	0.00	2.59
3016	3616	8.754080	AGTACATTTCAACTTAGCTCTGACTAT	58.246	33.333	0.00	0.00	0.00	2.12
3017	3617	9.026074	GTACATTTCAACTTAGCTCTGACTATC	57.974	37.037	0.00	0.00	0.00	2.08
3018	3618	7.044798	ACATTTCAACTTAGCTCTGACTATCC	58.955	38.462	0.00	0.00	0.00	2.59
3019	3619	5.599999	TTCAACTTAGCTCTGACTATCCC	57.400	43.478	0.00	0.00	0.00	3.85
3020	3620	3.961408	TCAACTTAGCTCTGACTATCCCC	59.039	47.826	0.00	0.00	0.00	4.81
3021	3621	3.964031	CAACTTAGCTCTGACTATCCCCT	59.036	47.826	0.00	0.00	0.00	4.79
3022	3622	3.571590	ACTTAGCTCTGACTATCCCCTG	58.428	50.000	0.00	0.00	0.00	4.45
3023	3623	2.002505	TAGCTCTGACTATCCCCTGC	57.997	55.000	0.00	0.00	0.00	4.85
3024	3624	0.762461	AGCTCTGACTATCCCCTGCC	60.762	60.000	0.00	0.00	0.00	4.85
3025	3625	0.762461	GCTCTGACTATCCCCTGCCT	60.762	60.000	0.00	0.00	0.00	4.75
3026	3626	1.047002	CTCTGACTATCCCCTGCCTG	58.953	60.000	0.00	0.00	0.00	4.85
3027	3627	0.636647	TCTGACTATCCCCTGCCTGA	59.363	55.000	0.00	0.00	0.00	3.86
3028	3628	1.221523	TCTGACTATCCCCTGCCTGAT	59.778	52.381	0.00	0.00	0.00	2.90
3029	3629	1.622811	CTGACTATCCCCTGCCTGATC	59.377	57.143	0.00	0.00	0.00	2.92
3030	3630	1.221523	TGACTATCCCCTGCCTGATCT	59.778	52.381	0.00	0.00	0.00	2.75
3031	3631	2.334023	GACTATCCCCTGCCTGATCTT	58.666	52.381	0.00	0.00	0.00	2.40
3032	3632	2.708325	GACTATCCCCTGCCTGATCTTT	59.292	50.000	0.00	0.00	0.00	2.52
3033	3633	3.126453	ACTATCCCCTGCCTGATCTTTT	58.874	45.455	0.00	0.00	0.00	2.27
3034	3634	4.307259	ACTATCCCCTGCCTGATCTTTTA	58.693	43.478	0.00	0.00	0.00	1.52
3035	3635	4.726825	ACTATCCCCTGCCTGATCTTTTAA	59.273	41.667	0.00	0.00	0.00	1.52
3036	3636	4.608170	ATCCCCTGCCTGATCTTTTAAA	57.392	40.909	0.00	0.00	0.00	1.52
3037	3637	4.396357	TCCCCTGCCTGATCTTTTAAAA	57.604	40.909	0.00	0.00	0.00	1.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	5.702670	CAGAGTGTAGAAAGGAAAAGATGCA	59.297	40.000	0.00	0.00	0.00	3.96
285	311	9.396022	ACAGGATTTTATTTGTATCACTCGATT	57.604	29.630	0.00	0.00	32.73	3.34
322	432	1.706995	TTGGTCCTGGCAAACCCGTA	61.707	55.000	14.29	0.39	34.47	4.02
372	492	5.163281	TGGCGAACCACTTATTACCTTTA	57.837	39.130	0.00	0.00	42.67	1.85
468	674	7.840210	ACTCTGCTAAAGAACCTAAGTATACCT	59.160	37.037	0.00	0.00	33.37	3.08
488	694	4.625028	TGATGATGTGCATACTACTCTGC	58.375	43.478	0.00	0.00	37.34	4.26
502	708	3.819368	TGTGTCAAACCACTGATGATGT	58.181	40.909	0.00	0.00	36.30	3.06
512	718	7.194112	TCATCTAATCCTATGTGTCAAACCA	57.806	36.000	0.00	0.00	0.00	3.67
532	738	7.543520	TGAGATGATTATGCGACTATGTTCATC	59.456	37.037	0.00	0.00	38.85	2.92
567	778	0.692476	ATGCCAAGTAGCTCACCACA	59.308	50.000	0.00	0.00	0.00	4.17
583	794	1.760192	ACTCATTCTCAAGCCCATGC	58.240	50.000	0.00	0.00	37.95	4.06
609	820	5.831997	AGGAAAATAACTGCTGTTCAACAC	58.168	37.500	12.67	3.79	37.59	3.32
631	849	4.156739	GGAAAGCTGGTAGAATGAACCAAG	59.843	45.833	0.00	0.00	46.14	3.61
727	946	6.670902	TCTGGCAAACTTAGTACTACCCTTAT	59.329	38.462	0.91	0.00	0.00	1.73
748	967	7.769272	TTTGCTTTCTTTTTAACATGTCTGG	57.231	32.000	0.00	0.00	0.00	3.86
769	1004	9.956720	ATGAGTTTATGAGTTCTTCAACTTTTG	57.043	29.630	0.00	0.00	43.37	2.44
780	1019	6.206634	TGGTTGTTGGATGAGTTTATGAGTTC	59.793	38.462	0.00	0.00	0.00	3.01
807	1046	9.387123	GTTTGCTTGAGAGACTTTATTTTACTG	57.613	33.333	0.00	0.00	0.00	2.74
847	1092	3.008049	ACTCAAGCGACAAAGGAGGTAAT	59.992	43.478	0.00	0.00	0.00	1.89
1037	1294	6.387465	CAGCTTGTGAAGTGAATCATCAATT	58.613	36.000	0.00	0.00	45.79	2.32
1112	1369	2.576191	CCACATGGAGAGGAAAACCCTA	59.424	50.000	0.00	0.00	41.21	3.53
1131	1388	2.282391	AGGAACTTGCATGCGCCA	60.282	55.556	14.09	0.00	37.32	5.69
1166	1423	2.668550	GGGCGAAGACACACCCAC	60.669	66.667	0.00	0.00	37.00	4.61
1222	1479	3.877735	GCACCAAAGACCTTATGGATGGT	60.878	47.826	0.81	7.35	38.78	3.55
1499	1769	4.098960	CCTAAGAGAACATTGCATGCCATT	59.901	41.667	16.68	3.78	0.00	3.16
1785	2080	0.260816	ACGGGGCTGTATAGTCAGGA	59.739	55.000	0.00	0.00	36.12	3.86
1837	2138	3.838244	TTCCTGGATATCAACGGGAAG	57.162	47.619	14.85	0.00	44.88	3.46
1854	2155	7.951347	ATTCCCATTATCTTGCAGATATTCC	57.049	36.000	6.68	0.00	37.09	3.01
1869	2170	5.139727	CCTCAGTGCCAATAATTCCCATTA	58.860	41.667	0.00	0.00	0.00	1.90
1895	2196	1.739067	GCAAAGGCAACCGAGTAGAT	58.261	50.000	0.00	0.00	40.72	1.98
1986	2393	5.047306	CCATGGCTTATAATCTGACGGACTA	60.047	44.000	0.00	0.00	0.00	2.59
2137	2564	0.394938	TAGCTTGGCCAAGTCACGAA	59.605	50.000	38.87	19.55	40.45	3.85
2340	2810	3.434167	CCTGTCCTCCCAGTTTCATATGG	60.434	52.174	2.13	0.00	36.27	2.74
2345	2815	1.814429	TTCCTGTCCTCCCAGTTTCA	58.186	50.000	0.00	0.00	0.00	2.69
2400	2872	4.769688	TGAACTTGACAGAAGAAGCTTGA	58.230	39.130	2.10	0.00	0.00	3.02
2492	2964	7.467539	GCGTCTGTCTCATGATACTAACTAGTT	60.468	40.741	13.68	13.68	37.73	2.24
2502	2974	3.195610	AGTTTGGCGTCTGTCTCATGATA	59.804	43.478	0.00	0.00	0.00	2.15
2628	3122	1.068753	CACAAAAACCATGGCCGCA	59.931	52.632	13.04	0.00	0.00	5.69
2648	3142	4.791088	GCGGAATACCTACGAAGTCCTAAC	60.791	50.000	0.00	0.00	43.93	2.34
2655	3149	0.664761	TCGGCGGAATACCTACGAAG	59.335	55.000	7.21	0.00	38.36	3.79
2656	3150	1.102154	TTCGGCGGAATACCTACGAA	58.898	50.000	7.21	0.00	43.71	3.85
2657	3151	0.381801	GTTCGGCGGAATACCTACGA	59.618	55.000	7.21	0.00	39.07	3.43
2658	3152	0.101040	TGTTCGGCGGAATACCTACG	59.899	55.000	7.21	0.00	34.05	3.51
2659	3153	1.537562	CCTGTTCGGCGGAATACCTAC	60.538	57.143	7.21	0.00	34.05	3.18
2660	3154	0.748450	CCTGTTCGGCGGAATACCTA	59.252	55.000	7.21	0.00	34.05	3.08
2661	3155	1.262640	ACCTGTTCGGCGGAATACCT	61.263	55.000	7.21	0.00	34.05	3.08
2664	3158	0.609151	TCAACCTGTTCGGCGGAATA	59.391	50.000	7.21	6.63	34.05	1.75
2671	3200	1.806542	CCATGAACTCAACCTGTTCGG	59.193	52.381	0.00	0.00	44.67	4.30
2700	3229	5.893255	CCTCTATCTATCTCTGATTCCAGGG	59.107	48.000	0.00	0.00	42.33	4.45
2702	3231	7.775093	CCTACCTCTATCTATCTCTGATTCCAG	59.225	44.444	0.00	0.00	41.74	3.86
2707	3236	6.446759	TCAGCCTACCTCTATCTATCTCTGAT	59.553	42.308	0.00	0.00	0.00	2.90
2788	3324	2.038269	GCCGAGCCGTTGATTGGAA	61.038	57.895	0.00	0.00	32.77	3.53
2792	3328	2.813908	GTCGCCGAGCCGTTGATT	60.814	61.111	0.00	0.00	0.00	2.57
2793	3329	3.371097	ATGTCGCCGAGCCGTTGAT	62.371	57.895	0.00	0.00	0.00	2.57
2794	3330	3.982372	GATGTCGCCGAGCCGTTGA	62.982	63.158	0.00	0.00	0.00	3.18
2795	3331	3.554692	GATGTCGCCGAGCCGTTG	61.555	66.667	0.00	0.00	0.00	4.10
2801	3341	2.279120	GCCTCAGATGTCGCCGAG	60.279	66.667	0.00	0.00	0.00	4.63
2912	3512	7.093727	CCATAGGAATAGATAGGCCCATATACG	60.094	44.444	0.00	0.00	0.00	3.06
3004	3604	1.481428	GGCAGGGGATAGTCAGAGCTA	60.481	57.143	0.00	0.00	0.00	3.32
3014	3614	5.725551	TTTAAAAGATCAGGCAGGGGATA	57.274	39.130	0.00	0.00	0.00	2.59
3015	3615	4.608170	TTTAAAAGATCAGGCAGGGGAT	57.392	40.909	0.00	0.00	0.00	3.85
3016	3616	4.396357	TTTTAAAAGATCAGGCAGGGGA	57.604	40.909	0.00	0.00	0.00	4.81

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.