Multiple sequence alignment - TraesCS6A01G052900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G052900 chr6A 100.000 8572 0 0 1 8572 27507084 27498513 0.000000e+00 15830.0
1 TraesCS6A01G052900 chr6B 94.691 6574 209 42 1802 8302 48353537 48347031 0.000000e+00 10078.0
2 TraesCS6A01G052900 chr6B 85.814 1001 69 37 757 1724 48354521 48353561 0.000000e+00 994.0
3 TraesCS6A01G052900 chr6B 92.832 279 15 4 8296 8572 48340306 48340031 4.820000e-107 399.0
4 TraesCS6A01G052900 chrUn 95.224 3392 112 17 4481 7838 111936704 111933329 0.000000e+00 5321.0
5 TraesCS6A01G052900 chrUn 96.221 2567 57 11 1844 4410 111939224 111936698 0.000000e+00 4167.0
6 TraesCS6A01G052900 chrUn 86.991 1522 94 48 247 1724 111940745 111939284 0.000000e+00 1618.0
7 TraesCS6A01G052900 chrUn 91.907 729 39 13 7854 8572 111933258 111932540 0.000000e+00 1002.0
8 TraesCS6A01G052900 chrUn 85.993 871 88 14 4699 5551 58729327 58728473 0.000000e+00 902.0
9 TraesCS6A01G052900 chrUn 89.062 384 39 2 5058 5441 58730610 58730230 2.800000e-129 473.0
10 TraesCS6A01G052900 chr2A 76.488 336 59 17 8115 8442 428905931 428906254 1.910000e-36 165.0
11 TraesCS6A01G052900 chr7B 82.317 164 22 5 591 753 705524081 705524238 1.500000e-27 135.0
12 TraesCS6A01G052900 chr5B 79.259 135 24 3 8106 8237 621136086 621135953 3.300000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G052900 chr6A 27498513 27507084 8571 True 15830.0 15830 100.00000 1 8572 1 chr6A.!!$R1 8571
1 TraesCS6A01G052900 chr6B 48347031 48354521 7490 True 5536.0 10078 90.25250 757 8302 2 chr6B.!!$R2 7545
2 TraesCS6A01G052900 chrUn 111932540 111940745 8205 True 3027.0 5321 92.58575 247 8572 4 chrUn.!!$R2 8325
3 TraesCS6A01G052900 chrUn 58728473 58730610 2137 True 687.5 902 87.52750 4699 5551 2 chrUn.!!$R1 852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.037590 AATTACCAACCAGCAGCCGA 59.962 50.000 0.00 0.00 0.00 5.54 F
863 868 0.108138 AGCCCGATCTGCAACACTAC 60.108 55.000 6.83 0.00 0.00 2.73 F
1813 1880 0.179129 CGGGGCTTGTGCAATTGATC 60.179 55.000 10.34 1.39 41.91 2.92 F
2052 2127 0.471780 TCCAACCTGCTCAGTCTGGA 60.472 55.000 11.12 11.12 35.90 3.86 F
2475 2550 0.510359 CACTTTCTGCTGCACTCGTC 59.490 55.000 0.00 0.00 0.00 4.20 F
3897 3972 0.478072 AGTTGGTTCCTGATGTGCCA 59.522 50.000 0.00 0.00 0.00 4.92 F
4430 4580 0.878416 GCCACAAGCCGTTGATGTTA 59.122 50.000 0.00 0.00 37.10 2.41 F
4431 4581 1.135689 GCCACAAGCCGTTGATGTTAG 60.136 52.381 0.00 0.00 37.10 2.34 F
6020 6200 0.824109 TGTTCCGCCATCGAGAATCT 59.176 50.000 0.00 0.00 38.10 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2116 0.037790 GCGGGATATCCAGACTGAGC 60.038 60.000 24.22 12.48 37.91 4.26 R
2211 2286 0.323360 TGCTTACAGATTGCACCCCC 60.323 55.000 0.00 0.00 0.00 5.40 R
2842 2917 0.663153 GGTTGTGTCACAGGTTCAGC 59.337 55.000 5.67 0.00 0.00 4.26 R
2952 3027 1.065199 CCCTTATCTGTTGCTGCCTCA 60.065 52.381 0.00 0.00 0.00 3.86 R
4411 4561 0.878416 TAACATCAACGGCTTGTGGC 59.122 50.000 0.00 0.00 40.90 5.01 R
4706 4865 2.032178 GGAATCGCAGCATTCTTGGTAC 59.968 50.000 13.79 0.00 33.81 3.34 R
5769 5949 2.164624 ACCAGCTAGCTTGAGAAGTACG 59.835 50.000 21.82 3.73 0.00 3.67 R
6085 6265 2.649034 GCCACTCTCCGACGAACA 59.351 61.111 0.00 0.00 0.00 3.18 R
7693 7907 0.038343 CAACGGCAAAACATGAGGGG 60.038 55.000 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.868906 TGGGCAATGTAAGTAATAAAGTACC 57.131 36.000 0.00 0.00 0.00 3.34
27 28 6.829811 TGGGCAATGTAAGTAATAAAGTACCC 59.170 38.462 0.00 0.00 0.00 3.69
30 31 7.066163 GGCAATGTAAGTAATAAAGTACCCGTT 59.934 37.037 0.00 0.00 0.00 4.44
31 32 7.906527 GCAATGTAAGTAATAAAGTACCCGTTG 59.093 37.037 0.00 0.00 0.00 4.10
32 33 8.938906 CAATGTAAGTAATAAAGTACCCGTTGT 58.061 33.333 0.00 0.00 0.00 3.32
33 34 7.887996 TGTAAGTAATAAAGTACCCGTTGTG 57.112 36.000 0.00 0.00 0.00 3.33
34 35 7.441017 TGTAAGTAATAAAGTACCCGTTGTGT 58.559 34.615 0.00 0.00 0.00 3.72
35 36 7.930865 TGTAAGTAATAAAGTACCCGTTGTGTT 59.069 33.333 0.00 0.00 0.00 3.32
36 37 6.790285 AGTAATAAAGTACCCGTTGTGTTG 57.210 37.500 0.00 0.00 0.00 3.33
37 38 6.523840 AGTAATAAAGTACCCGTTGTGTTGA 58.476 36.000 0.00 0.00 0.00 3.18
38 39 7.163441 AGTAATAAAGTACCCGTTGTGTTGAT 58.837 34.615 0.00 0.00 0.00 2.57
39 40 5.873179 ATAAAGTACCCGTTGTGTTGATG 57.127 39.130 0.00 0.00 0.00 3.07
40 41 1.519408 AGTACCCGTTGTGTTGATGC 58.481 50.000 0.00 0.00 0.00 3.91
41 42 1.202710 AGTACCCGTTGTGTTGATGCA 60.203 47.619 0.00 0.00 0.00 3.96
42 43 1.069500 GTACCCGTTGTGTTGATGCAC 60.069 52.381 0.00 0.00 39.65 4.57
43 44 0.749818 ACCCGTTGTGTTGATGCACA 60.750 50.000 0.00 0.00 46.30 4.57
47 48 4.995594 TGTGTTGATGCACACCCA 57.004 50.000 3.04 0.00 45.67 4.51
48 49 2.413677 TGTGTTGATGCACACCCAC 58.586 52.632 3.04 2.70 45.67 4.61
49 50 0.394899 TGTGTTGATGCACACCCACA 60.395 50.000 6.92 6.92 45.67 4.17
50 51 0.961019 GTGTTGATGCACACCCACAT 59.039 50.000 0.00 0.00 41.18 3.21
51 52 1.068333 GTGTTGATGCACACCCACATC 60.068 52.381 0.00 0.00 41.18 3.06
55 56 1.819903 TGATGCACACCCACATCATTG 59.180 47.619 1.71 0.00 45.79 2.82
56 57 1.820519 GATGCACACCCACATCATTGT 59.179 47.619 0.00 0.00 41.86 2.71
66 67 2.863739 CACATCATTGTGCAGCTCTTG 58.136 47.619 0.00 0.00 46.20 3.02
78 79 2.805845 CAGCTCTTGCATATTTGTGCC 58.194 47.619 0.00 0.00 44.43 5.01
79 80 1.402968 AGCTCTTGCATATTTGTGCCG 59.597 47.619 0.00 0.00 44.43 5.69
81 82 2.159393 GCTCTTGCATATTTGTGCCGAA 60.159 45.455 0.00 0.00 44.43 4.30
82 83 3.673052 GCTCTTGCATATTTGTGCCGAAA 60.673 43.478 0.00 0.00 44.43 3.46
83 84 4.484236 CTCTTGCATATTTGTGCCGAAAA 58.516 39.130 0.00 0.00 44.43 2.29
86 87 4.250116 TGCATATTTGTGCCGAAAACTT 57.750 36.364 0.00 0.00 44.43 2.66
87 88 3.986572 TGCATATTTGTGCCGAAAACTTG 59.013 39.130 0.00 0.00 44.43 3.16
88 89 4.233789 GCATATTTGTGCCGAAAACTTGA 58.766 39.130 0.00 0.00 39.18 3.02
89 90 4.864247 GCATATTTGTGCCGAAAACTTGAT 59.136 37.500 0.00 0.00 39.18 2.57
90 91 5.004726 GCATATTTGTGCCGAAAACTTGATC 59.995 40.000 0.00 0.00 39.18 2.92
92 93 4.377839 TTTGTGCCGAAAACTTGATCAA 57.622 36.364 8.12 8.12 0.00 2.57
93 94 3.624326 TGTGCCGAAAACTTGATCAAG 57.376 42.857 29.74 29.74 43.79 3.02
94 95 3.210227 TGTGCCGAAAACTTGATCAAGA 58.790 40.909 36.15 13.01 40.79 3.02
95 96 3.250762 TGTGCCGAAAACTTGATCAAGAG 59.749 43.478 36.15 21.38 40.79 2.85
96 97 3.498397 GTGCCGAAAACTTGATCAAGAGA 59.502 43.478 36.15 11.48 40.79 3.10
98 99 3.126000 GCCGAAAACTTGATCAAGAGAGG 59.874 47.826 36.15 28.18 40.79 3.69
99 100 3.126000 CCGAAAACTTGATCAAGAGAGGC 59.874 47.826 36.15 20.72 40.79 4.70
100 101 3.181526 CGAAAACTTGATCAAGAGAGGCG 60.182 47.826 36.15 26.26 40.79 5.52
101 102 1.731720 AACTTGATCAAGAGAGGCGC 58.268 50.000 36.15 0.00 40.79 6.53
103 104 1.288350 CTTGATCAAGAGAGGCGCAG 58.712 55.000 28.13 0.00 40.79 5.18
104 105 0.897621 TTGATCAAGAGAGGCGCAGA 59.102 50.000 10.83 0.00 0.00 4.26
105 106 0.897621 TGATCAAGAGAGGCGCAGAA 59.102 50.000 10.83 0.00 0.00 3.02
107 108 1.663135 GATCAAGAGAGGCGCAGAAAC 59.337 52.381 10.83 0.00 0.00 2.78
108 109 0.392706 TCAAGAGAGGCGCAGAAACA 59.607 50.000 10.83 0.00 0.00 2.83
109 110 1.202639 TCAAGAGAGGCGCAGAAACAA 60.203 47.619 10.83 0.00 0.00 2.83
110 111 1.069636 CAAGAGAGGCGCAGAAACAAC 60.070 52.381 10.83 0.00 0.00 3.32
111 112 0.394565 AGAGAGGCGCAGAAACAACT 59.605 50.000 10.83 0.00 0.00 3.16
112 113 1.202698 AGAGAGGCGCAGAAACAACTT 60.203 47.619 10.83 0.00 0.00 2.66
113 114 1.195674 GAGAGGCGCAGAAACAACTTC 59.804 52.381 10.83 0.00 0.00 3.01
114 115 1.202698 AGAGGCGCAGAAACAACTTCT 60.203 47.619 10.83 0.00 45.80 2.85
122 123 1.678101 AGAAACAACTTCTGCAGGTGC 59.322 47.619 15.13 0.00 45.35 5.01
123 124 1.678101 GAAACAACTTCTGCAGGTGCT 59.322 47.619 15.13 0.00 45.35 4.40
126 127 2.930950 ACAACTTCTGCAGGTGCTTAA 58.069 42.857 15.13 0.00 45.35 1.85
127 128 3.490348 ACAACTTCTGCAGGTGCTTAAT 58.510 40.909 15.13 0.00 45.35 1.40
128 129 3.254166 ACAACTTCTGCAGGTGCTTAATG 59.746 43.478 15.13 5.44 45.35 1.90
130 131 3.077359 ACTTCTGCAGGTGCTTAATGTC 58.923 45.455 15.13 0.00 42.66 3.06
131 132 3.244700 ACTTCTGCAGGTGCTTAATGTCT 60.245 43.478 15.13 0.00 42.66 3.41
132 133 3.423539 TCTGCAGGTGCTTAATGTCTT 57.576 42.857 15.13 0.00 42.66 3.01
133 134 3.076621 TCTGCAGGTGCTTAATGTCTTG 58.923 45.455 15.13 0.00 42.66 3.02
134 135 2.816087 CTGCAGGTGCTTAATGTCTTGT 59.184 45.455 5.57 0.00 42.66 3.16
136 137 4.393834 TGCAGGTGCTTAATGTCTTGTAA 58.606 39.130 3.18 0.00 42.66 2.41
137 138 4.455533 TGCAGGTGCTTAATGTCTTGTAAG 59.544 41.667 3.18 0.00 42.66 2.34
139 140 5.617751 GCAGGTGCTTAATGTCTTGTAAGTG 60.618 44.000 0.00 0.00 38.21 3.16
140 141 4.455877 AGGTGCTTAATGTCTTGTAAGTGC 59.544 41.667 0.00 0.00 31.24 4.40
142 143 5.106157 GGTGCTTAATGTCTTGTAAGTGCAT 60.106 40.000 0.00 0.00 31.24 3.96
143 144 6.093495 GGTGCTTAATGTCTTGTAAGTGCATA 59.907 38.462 0.00 0.00 31.24 3.14
144 145 7.201732 GGTGCTTAATGTCTTGTAAGTGCATAT 60.202 37.037 0.00 0.00 31.24 1.78
147 148 7.852945 GCTTAATGTCTTGTAAGTGCATATGAC 59.147 37.037 6.97 2.11 31.24 3.06
148 149 6.683974 AATGTCTTGTAAGTGCATATGACC 57.316 37.500 6.97 0.00 0.00 4.02
150 151 3.555956 GTCTTGTAAGTGCATATGACCGG 59.444 47.826 6.97 0.00 0.00 5.28
152 153 3.620427 TGTAAGTGCATATGACCGGTT 57.380 42.857 9.42 0.00 0.00 4.44
153 154 3.266636 TGTAAGTGCATATGACCGGTTG 58.733 45.455 9.42 3.55 0.00 3.77
156 157 1.277842 AGTGCATATGACCGGTTGACA 59.722 47.619 9.42 1.74 0.00 3.58
157 158 2.080693 GTGCATATGACCGGTTGACAA 58.919 47.619 9.42 0.00 0.00 3.18
158 159 2.095853 GTGCATATGACCGGTTGACAAG 59.904 50.000 9.42 0.00 0.00 3.16
159 160 1.064060 GCATATGACCGGTTGACAAGC 59.936 52.381 9.42 7.33 0.00 4.01
160 161 2.355197 CATATGACCGGTTGACAAGCA 58.645 47.619 9.42 0.00 0.00 3.91
161 162 1.803334 TATGACCGGTTGACAAGCAC 58.197 50.000 9.42 8.33 0.00 4.40
162 163 0.179032 ATGACCGGTTGACAAGCACA 60.179 50.000 9.42 13.00 0.00 4.57
163 164 0.393132 TGACCGGTTGACAAGCACAA 60.393 50.000 9.42 0.00 0.00 3.33
166 167 1.336755 ACCGGTTGACAAGCACAATTC 59.663 47.619 16.99 0.00 0.00 2.17
167 168 1.336440 CCGGTTGACAAGCACAATTCA 59.664 47.619 16.99 0.00 0.00 2.57
168 169 2.030007 CCGGTTGACAAGCACAATTCAT 60.030 45.455 16.99 0.00 0.00 2.57
170 171 3.304592 CGGTTGACAAGCACAATTCATGA 60.305 43.478 16.99 0.00 0.00 3.07
173 174 5.523188 GGTTGACAAGCACAATTCATGAAAA 59.477 36.000 13.09 0.00 0.00 2.29
175 176 7.384660 GGTTGACAAGCACAATTCATGAAAATA 59.615 33.333 13.09 0.00 0.00 1.40
176 177 8.928733 GTTGACAAGCACAATTCATGAAAATAT 58.071 29.630 13.09 0.00 0.00 1.28
183 184 9.101655 AGCACAATTCATGAAAATATTTAAGCC 57.898 29.630 13.09 0.00 0.00 4.35
184 185 9.101655 GCACAATTCATGAAAATATTTAAGCCT 57.898 29.630 13.09 0.00 0.00 4.58
219 220 7.687941 TCAAACTCTAAATGGCTAAAGGAAG 57.312 36.000 0.00 0.00 0.00 3.46
220 221 6.659242 TCAAACTCTAAATGGCTAAAGGAAGG 59.341 38.462 0.00 0.00 0.00 3.46
221 222 6.388619 AACTCTAAATGGCTAAAGGAAGGA 57.611 37.500 0.00 0.00 0.00 3.36
222 223 6.388619 ACTCTAAATGGCTAAAGGAAGGAA 57.611 37.500 0.00 0.00 0.00 3.36
226 227 9.408648 CTCTAAATGGCTAAAGGAAGGAAATTA 57.591 33.333 0.00 0.00 0.00 1.40
227 228 9.185680 TCTAAATGGCTAAAGGAAGGAAATTAC 57.814 33.333 0.00 0.00 0.00 1.89
228 229 6.791867 AATGGCTAAAGGAAGGAAATTACC 57.208 37.500 0.00 0.00 0.00 2.85
231 232 5.479027 TGGCTAAAGGAAGGAAATTACCAAC 59.521 40.000 0.00 0.00 0.00 3.77
232 233 5.105473 GGCTAAAGGAAGGAAATTACCAACC 60.105 44.000 0.00 0.00 0.00 3.77
233 234 5.479027 GCTAAAGGAAGGAAATTACCAACCA 59.521 40.000 0.00 0.00 32.83 3.67
234 235 6.350194 GCTAAAGGAAGGAAATTACCAACCAG 60.350 42.308 0.00 0.00 32.83 4.00
235 236 3.431415 AGGAAGGAAATTACCAACCAGC 58.569 45.455 0.00 0.00 32.83 4.85
237 238 3.193479 GGAAGGAAATTACCAACCAGCAG 59.807 47.826 0.00 0.00 0.00 4.24
238 239 2.171003 AGGAAATTACCAACCAGCAGC 58.829 47.619 0.00 0.00 0.00 5.25
239 240 1.204704 GGAAATTACCAACCAGCAGCC 59.795 52.381 0.00 0.00 0.00 4.85
240 241 0.887933 AAATTACCAACCAGCAGCCG 59.112 50.000 0.00 0.00 0.00 5.52
241 242 0.037590 AATTACCAACCAGCAGCCGA 59.962 50.000 0.00 0.00 0.00 5.54
242 243 0.392998 ATTACCAACCAGCAGCCGAG 60.393 55.000 0.00 0.00 0.00 4.63
243 244 2.463589 TTACCAACCAGCAGCCGAGG 62.464 60.000 0.00 0.00 0.00 4.63
292 293 2.093500 TGATTCACATGGTCCTCGGAAG 60.093 50.000 0.00 0.00 0.00 3.46
349 350 9.857656 AAGTGTCATATCCTATTGAATGTGATT 57.142 29.630 0.00 0.00 0.00 2.57
518 519 6.261381 GGAAGAAAAATTTACCCCCAAAACAC 59.739 38.462 0.00 0.00 0.00 3.32
522 523 6.809976 AAAATTTACCCCCAAAACACAGTA 57.190 33.333 0.00 0.00 0.00 2.74
529 530 2.363680 CCCCAAAACACAGTACATTGCA 59.636 45.455 0.00 0.00 0.00 4.08
538 539 7.410800 AACACAGTACATTGCAAAATTGATG 57.589 32.000 1.71 0.00 0.00 3.07
543 544 6.477688 CAGTACATTGCAAAATTGATGATCCC 59.522 38.462 1.71 0.00 0.00 3.85
550 551 4.141892 GCAAAATTGATGATCCCACATCCA 60.142 41.667 0.00 0.00 43.96 3.41
552 553 3.957508 ATTGATGATCCCACATCCACA 57.042 42.857 0.00 0.00 43.96 4.17
562 563 3.829601 TCCCACATCCACAAACCATTTAC 59.170 43.478 0.00 0.00 0.00 2.01
638 640 7.758076 ACTCATTATTGAATGCACTTTCACATG 59.242 33.333 2.20 6.13 42.01 3.21
691 693 9.846248 CCATACTGCTTTATATAAAATTCAGCC 57.154 33.333 20.41 5.71 0.00 4.85
734 736 5.536554 ACTTCAGTCAAATCTAACATGCG 57.463 39.130 0.00 0.00 0.00 4.73
735 737 5.237815 ACTTCAGTCAAATCTAACATGCGA 58.762 37.500 0.00 0.00 0.00 5.10
736 738 5.349817 ACTTCAGTCAAATCTAACATGCGAG 59.650 40.000 0.00 0.00 0.00 5.03
810 813 9.726438 ATATGAATTCCTCTTCGGGTAAAATAG 57.274 33.333 2.27 0.00 0.00 1.73
815 818 8.873186 ATTCCTCTTCGGGTAAAATAGAAAAA 57.127 30.769 0.00 0.00 0.00 1.94
863 868 0.108138 AGCCCGATCTGCAACACTAC 60.108 55.000 6.83 0.00 0.00 2.73
1240 1302 4.593864 GGCGAGGGCTAAGAGCGG 62.594 72.222 0.00 0.00 43.62 5.52
1271 1333 4.710695 CTGTGGTGCCGCGTCGTA 62.711 66.667 4.92 0.00 0.00 3.43
1345 1407 6.669591 ACGGTAGACCCTAAACCTAAACTATT 59.330 38.462 0.00 0.00 0.00 1.73
1347 1409 8.043113 CGGTAGACCCTAAACCTAAACTATTTT 58.957 37.037 0.00 0.00 0.00 1.82
1377 1439 4.077184 TGCCGCTGAACCCTACCG 62.077 66.667 0.00 0.00 0.00 4.02
1419 1481 2.915659 TGGGAACTCGTCGGCTGT 60.916 61.111 0.00 0.00 0.00 4.40
1431 1493 0.963355 TCGGCTGTATTGGGTTTGGC 60.963 55.000 0.00 0.00 0.00 4.52
1457 1519 1.797537 GGTTGATTGAAGCACGCGC 60.798 57.895 5.73 0.00 38.99 6.86
1505 1567 5.938125 GTGTGGAGTACTATGTGATTTTGGT 59.062 40.000 0.00 0.00 0.00 3.67
1506 1568 6.430000 GTGTGGAGTACTATGTGATTTTGGTT 59.570 38.462 0.00 0.00 0.00 3.67
1507 1569 6.429692 TGTGGAGTACTATGTGATTTTGGTTG 59.570 38.462 0.00 0.00 0.00 3.77
1508 1570 5.943416 TGGAGTACTATGTGATTTTGGTTGG 59.057 40.000 0.00 0.00 0.00 3.77
1509 1571 5.357032 GGAGTACTATGTGATTTTGGTTGGG 59.643 44.000 0.00 0.00 0.00 4.12
1510 1572 5.261216 AGTACTATGTGATTTTGGTTGGGG 58.739 41.667 0.00 0.00 0.00 4.96
1511 1573 2.831526 ACTATGTGATTTTGGTTGGGGC 59.168 45.455 0.00 0.00 0.00 5.80
1512 1574 2.028561 ATGTGATTTTGGTTGGGGCT 57.971 45.000 0.00 0.00 0.00 5.19
1513 1575 1.337118 TGTGATTTTGGTTGGGGCTC 58.663 50.000 0.00 0.00 0.00 4.70
1520 1582 3.359695 TTTGGTTGGGGCTCTATGTAC 57.640 47.619 0.00 0.00 0.00 2.90
1547 1609 5.049828 TGTATGCTGTGATTTCGATGTAGG 58.950 41.667 0.00 0.00 0.00 3.18
1569 1631 1.081840 GCTGTTGGAGTGCTTTCGC 60.082 57.895 0.00 0.00 0.00 4.70
1596 1658 5.172205 GGCTTCTAGTTTGTAGACAAGAGG 58.828 45.833 0.00 0.00 37.15 3.69
1599 1661 6.420913 TTCTAGTTTGTAGACAAGAGGCTT 57.579 37.500 0.00 0.00 37.15 4.35
1600 1662 6.026947 TCTAGTTTGTAGACAAGAGGCTTC 57.973 41.667 0.00 0.00 37.15 3.86
1602 1664 4.636249 AGTTTGTAGACAAGAGGCTTCAG 58.364 43.478 0.00 0.00 37.15 3.02
1659 1721 3.741805 CAAGTGTGCATCTCATGACAG 57.258 47.619 0.00 0.00 0.00 3.51
1664 1731 6.661304 AGTGTGCATCTCATGACAGATATA 57.339 37.500 0.00 0.00 31.47 0.86
1665 1732 6.453943 AGTGTGCATCTCATGACAGATATAC 58.546 40.000 0.00 0.00 31.47 1.47
1686 1753 4.451900 ACGAGTGTCCTGTTTTTCATCTT 58.548 39.130 0.00 0.00 0.00 2.40
1694 1761 7.973944 GTGTCCTGTTTTTCATCTTTACAAACT 59.026 33.333 0.00 0.00 0.00 2.66
1705 1772 6.868864 TCATCTTTACAAACTACACAGAGAGC 59.131 38.462 0.00 0.00 0.00 4.09
1708 1775 5.531122 TTACAAACTACACAGAGAGCAGT 57.469 39.130 0.00 0.00 0.00 4.40
1709 1776 4.408182 ACAAACTACACAGAGAGCAGTT 57.592 40.909 0.00 0.00 0.00 3.16
1710 1777 4.122776 ACAAACTACACAGAGAGCAGTTG 58.877 43.478 0.00 0.00 30.20 3.16
1724 1791 4.586001 AGAGCAGTTGGAACATCATGTTTT 59.414 37.500 4.04 0.00 41.28 2.43
1725 1792 5.769662 AGAGCAGTTGGAACATCATGTTTTA 59.230 36.000 4.04 0.00 41.28 1.52
1726 1793 6.265196 AGAGCAGTTGGAACATCATGTTTTAA 59.735 34.615 4.04 0.53 41.28 1.52
1728 1795 5.982516 GCAGTTGGAACATCATGTTTTAACA 59.017 36.000 22.52 11.48 41.28 2.41
1729 1796 6.074356 GCAGTTGGAACATCATGTTTTAACAC 60.074 38.462 22.52 14.94 41.28 3.32
1730 1797 6.977502 CAGTTGGAACATCATGTTTTAACACA 59.022 34.615 22.52 0.00 41.28 3.72
1731 1798 7.490725 CAGTTGGAACATCATGTTTTAACACAA 59.509 33.333 22.52 12.25 41.28 3.33
1732 1799 8.037758 AGTTGGAACATCATGTTTTAACACAAA 58.962 29.630 22.52 3.11 41.28 2.83
1733 1800 8.825745 GTTGGAACATCATGTTTTAACACAAAT 58.174 29.630 18.61 0.00 41.28 2.32
1734 1801 8.954950 TGGAACATCATGTTTTAACACAAATT 57.045 26.923 4.04 0.00 41.28 1.82
1735 1802 9.388506 TGGAACATCATGTTTTAACACAAATTT 57.611 25.926 4.04 0.00 41.28 1.82
1736 1803 9.649024 GGAACATCATGTTTTAACACAAATTTG 57.351 29.630 16.67 16.67 41.28 2.32
1737 1804 9.649024 GAACATCATGTTTTAACACAAATTTGG 57.351 29.630 21.74 12.94 41.28 3.28
1738 1805 8.729805 ACATCATGTTTTAACACAAATTTGGT 57.270 26.923 21.74 13.54 42.51 3.67
1739 1806 9.171877 ACATCATGTTTTAACACAAATTTGGTT 57.828 25.926 21.74 21.34 42.51 3.67
1772 1839 3.944087 AGAACTTAGGTCCTGTGCATTC 58.056 45.455 0.00 0.00 0.00 2.67
1779 1846 1.453155 GTCCTGTGCATTCGATTGGT 58.547 50.000 9.21 0.00 0.00 3.67
1780 1847 1.812571 GTCCTGTGCATTCGATTGGTT 59.187 47.619 9.21 0.00 0.00 3.67
1781 1848 2.083774 TCCTGTGCATTCGATTGGTTC 58.916 47.619 9.21 0.00 0.00 3.62
1782 1849 2.086869 CCTGTGCATTCGATTGGTTCT 58.913 47.619 9.21 0.00 0.00 3.01
1783 1850 3.055458 TCCTGTGCATTCGATTGGTTCTA 60.055 43.478 9.21 0.00 0.00 2.10
1784 1851 3.879295 CCTGTGCATTCGATTGGTTCTAT 59.121 43.478 9.21 0.00 0.00 1.98
1785 1852 5.056480 CCTGTGCATTCGATTGGTTCTATA 58.944 41.667 9.21 0.00 0.00 1.31
1786 1853 5.702670 CCTGTGCATTCGATTGGTTCTATAT 59.297 40.000 9.21 0.00 0.00 0.86
1787 1854 6.347969 CCTGTGCATTCGATTGGTTCTATATG 60.348 42.308 9.21 0.00 0.00 1.78
1788 1855 5.049474 TGTGCATTCGATTGGTTCTATATGC 60.049 40.000 9.21 6.90 38.04 3.14
1789 1856 5.180117 GTGCATTCGATTGGTTCTATATGCT 59.820 40.000 9.21 0.00 38.30 3.79
1790 1857 6.368791 GTGCATTCGATTGGTTCTATATGCTA 59.631 38.462 9.21 0.00 38.30 3.49
1791 1858 6.591448 TGCATTCGATTGGTTCTATATGCTAG 59.409 38.462 9.21 0.00 38.30 3.42
1792 1859 6.456181 GCATTCGATTGGTTCTATATGCTAGC 60.456 42.308 8.10 8.10 35.49 3.42
1793 1860 4.733850 TCGATTGGTTCTATATGCTAGCG 58.266 43.478 10.77 0.00 0.00 4.26
1794 1861 3.304559 CGATTGGTTCTATATGCTAGCGC 59.695 47.826 10.77 0.00 0.00 5.92
1795 1862 2.347697 TGGTTCTATATGCTAGCGCG 57.652 50.000 10.77 0.00 39.65 6.86
1796 1863 1.067846 TGGTTCTATATGCTAGCGCGG 60.068 52.381 8.83 0.00 39.65 6.46
1797 1864 1.630148 GTTCTATATGCTAGCGCGGG 58.370 55.000 8.83 0.00 39.65 6.13
1798 1865 0.530744 TTCTATATGCTAGCGCGGGG 59.469 55.000 8.83 0.37 39.65 5.73
1799 1866 1.519455 CTATATGCTAGCGCGGGGC 60.519 63.158 8.83 9.26 44.05 5.80
1809 1876 4.054825 CGCGGGGCTTGTGCAATT 62.055 61.111 0.00 0.00 41.91 2.32
1810 1877 2.432972 GCGGGGCTTGTGCAATTG 60.433 61.111 0.00 0.00 41.91 2.32
1811 1878 2.929903 GCGGGGCTTGTGCAATTGA 61.930 57.895 10.34 0.00 41.91 2.57
1812 1879 1.892338 CGGGGCTTGTGCAATTGAT 59.108 52.632 10.34 0.00 41.91 2.57
1813 1880 0.179129 CGGGGCTTGTGCAATTGATC 60.179 55.000 10.34 1.39 41.91 2.92
1814 1881 0.179129 GGGGCTTGTGCAATTGATCG 60.179 55.000 10.34 0.00 41.91 3.69
1817 1884 1.470285 GGCTTGTGCAATTGATCGCAT 60.470 47.619 10.34 0.00 40.89 4.73
1829 1896 1.399089 TGATCGCATCAACACAGCATG 59.601 47.619 0.00 0.00 38.22 4.06
1838 1905 3.376078 CACAGCATGGGCCACACC 61.376 66.667 9.28 0.00 43.62 4.16
1857 1924 1.393539 CCGGAGTTGTGAATTAGTGCG 59.606 52.381 0.00 0.00 0.00 5.34
1859 1926 2.695359 GGAGTTGTGAATTAGTGCGGA 58.305 47.619 0.00 0.00 0.00 5.54
1865 1932 5.067283 AGTTGTGAATTAGTGCGGAAGTTTT 59.933 36.000 0.00 0.00 0.00 2.43
1886 1953 8.500773 AGTTTTGTTTCATTTCATCATTCATGC 58.499 29.630 0.00 0.00 31.70 4.06
1887 1954 8.500773 GTTTTGTTTCATTTCATCATTCATGCT 58.499 29.630 0.00 0.00 31.70 3.79
1888 1955 8.610248 TTTGTTTCATTTCATCATTCATGCTT 57.390 26.923 0.00 0.00 31.70 3.91
1889 1956 8.610248 TTGTTTCATTTCATCATTCATGCTTT 57.390 26.923 0.00 0.00 31.70 3.51
1890 1957 8.610248 TGTTTCATTTCATCATTCATGCTTTT 57.390 26.923 0.00 0.00 31.70 2.27
1891 1958 9.708092 TGTTTCATTTCATCATTCATGCTTTTA 57.292 25.926 0.00 0.00 31.70 1.52
1892 1959 9.962759 GTTTCATTTCATCATTCATGCTTTTAC 57.037 29.630 0.00 0.00 31.70 2.01
1893 1960 9.932207 TTTCATTTCATCATTCATGCTTTTACT 57.068 25.926 0.00 0.00 31.70 2.24
1959 2034 1.927710 GCTTTGAAAAGAGGCTGCACG 60.928 52.381 6.98 0.00 38.28 5.34
2041 2116 4.079787 TCCCCTCTTCAAATATCCAACCTG 60.080 45.833 0.00 0.00 0.00 4.00
2047 2122 4.574674 TCAAATATCCAACCTGCTCAGT 57.425 40.909 0.00 0.00 0.00 3.41
2052 2127 0.471780 TCCAACCTGCTCAGTCTGGA 60.472 55.000 11.12 11.12 35.90 3.86
2064 2139 1.373497 GTCTGGATATCCCGCTGCG 60.373 63.158 19.34 16.34 37.93 5.18
2183 2258 1.076044 AAGCTGCCCAAGTTGGTGT 60.076 52.632 20.54 0.00 35.17 4.16
2211 2286 2.746362 GCCAGAGACTTCACATCCTTTG 59.254 50.000 0.00 0.00 0.00 2.77
2212 2287 3.341823 CCAGAGACTTCACATCCTTTGG 58.658 50.000 0.00 0.00 0.00 3.28
2213 2288 3.341823 CAGAGACTTCACATCCTTTGGG 58.658 50.000 0.00 0.00 0.00 4.12
2214 2289 2.307098 AGAGACTTCACATCCTTTGGGG 59.693 50.000 0.00 0.00 0.00 4.96
2215 2290 1.355720 AGACTTCACATCCTTTGGGGG 59.644 52.381 0.00 0.00 35.33 5.40
2216 2291 1.075536 GACTTCACATCCTTTGGGGGT 59.924 52.381 0.00 0.00 35.33 4.95
2250 2325 2.109181 GTATCACTGAGGCCGCCC 59.891 66.667 5.55 0.00 0.00 6.13
2287 2362 3.374220 TTCAAACATCTTTGCCAGCAG 57.626 42.857 0.00 0.00 37.31 4.24
2349 2424 2.576615 AGTGTTGCTTCTCCAAAGGTC 58.423 47.619 0.00 0.00 0.00 3.85
2433 2508 1.471684 CAGCCTCAGCAGTTTGAATCC 59.528 52.381 0.00 0.00 43.56 3.01
2475 2550 0.510359 CACTTTCTGCTGCACTCGTC 59.490 55.000 0.00 0.00 0.00 4.20
2610 2685 1.621317 TCCAAGGATGCGAGTACAACA 59.379 47.619 0.00 0.00 0.00 3.33
2712 2787 5.050644 TGATCACAAGCACAAATGATGAC 57.949 39.130 0.00 0.00 31.96 3.06
2713 2788 4.519730 TGATCACAAGCACAAATGATGACA 59.480 37.500 0.00 0.00 31.96 3.58
2714 2789 4.492791 TCACAAGCACAAATGATGACAG 57.507 40.909 0.00 0.00 0.00 3.51
2715 2790 3.884693 TCACAAGCACAAATGATGACAGT 59.115 39.130 0.00 0.00 0.00 3.55
2716 2791 3.978855 CACAAGCACAAATGATGACAGTG 59.021 43.478 0.00 0.00 0.00 3.66
2717 2792 3.884693 ACAAGCACAAATGATGACAGTGA 59.115 39.130 0.00 0.00 32.14 3.41
2718 2793 4.224433 CAAGCACAAATGATGACAGTGAC 58.776 43.478 0.00 0.00 32.14 3.67
2724 2799 4.639755 ACAAATGATGACAGTGACACACAA 59.360 37.500 8.59 0.00 36.74 3.33
2830 2905 4.511454 GCCTTTGTTGGGTTTCTGATTTTC 59.489 41.667 0.00 0.00 0.00 2.29
2842 2917 2.029623 CTGATTTTCCTGCTGGGATGG 58.970 52.381 10.07 0.00 44.66 3.51
3064 3139 4.381411 AGTGAACAAGAAGTACAAGGAGC 58.619 43.478 0.00 0.00 0.00 4.70
3425 3500 8.419076 ACAAAAACCAATGATGAAACAAGTAC 57.581 30.769 0.00 0.00 0.00 2.73
3678 3753 7.387673 CCTTTTGAAAATTTATCAGTTGGGACC 59.612 37.037 0.00 0.00 0.00 4.46
3726 3801 3.995636 TGAACCTAGCTCCACCTTAGAT 58.004 45.455 0.00 0.00 0.00 1.98
3897 3972 0.478072 AGTTGGTTCCTGATGTGCCA 59.522 50.000 0.00 0.00 0.00 4.92
3927 4002 4.325344 GGAGAGAAAATCAAATCCTCCCCA 60.325 45.833 0.00 0.00 34.25 4.96
3987 4062 6.257849 GTGCTAATATGTCGAATCCTGTTTCA 59.742 38.462 0.00 0.00 0.00 2.69
4108 4183 5.064071 GCCATTTTCAAAAGGTTTGTTTCGA 59.936 36.000 0.00 0.00 0.00 3.71
4150 4225 3.898482 ACCAACTTAGCTTGTCCTGTTT 58.102 40.909 0.00 0.00 0.00 2.83
4250 4325 4.746115 TGCATTCTTGAACTTGTTTGATGC 59.254 37.500 0.00 0.00 0.00 3.91
4375 4450 6.013725 ACCACTATGTAGTTCATGAGTTTCCA 60.014 38.462 0.00 0.00 37.91 3.53
4407 4557 7.393515 GGATTTACCTCACCATCTACACTTTTT 59.606 37.037 0.00 0.00 35.41 1.94
4421 4571 2.725008 TTTTTCCGCCACAAGCCG 59.275 55.556 0.00 0.00 38.78 5.52
4422 4572 2.122167 TTTTTCCGCCACAAGCCGT 61.122 52.632 0.00 0.00 38.78 5.68
4423 4573 1.668101 TTTTTCCGCCACAAGCCGTT 61.668 50.000 0.00 0.00 38.78 4.44
4424 4574 2.343163 TTTTCCGCCACAAGCCGTTG 62.343 55.000 0.00 0.00 38.78 4.10
4425 4575 3.758973 TTCCGCCACAAGCCGTTGA 62.759 57.895 0.00 0.00 38.78 3.18
4426 4576 3.055719 CCGCCACAAGCCGTTGAT 61.056 61.111 0.00 0.00 38.78 2.57
4427 4577 2.176546 CGCCACAAGCCGTTGATG 59.823 61.111 0.00 0.00 38.78 3.07
4428 4578 2.616330 CGCCACAAGCCGTTGATGT 61.616 57.895 0.00 0.00 38.78 3.06
4429 4579 1.659794 GCCACAAGCCGTTGATGTT 59.340 52.632 0.00 0.00 37.10 2.71
4430 4580 0.878416 GCCACAAGCCGTTGATGTTA 59.122 50.000 0.00 0.00 37.10 2.41
4431 4581 1.135689 GCCACAAGCCGTTGATGTTAG 60.136 52.381 0.00 0.00 37.10 2.34
4432 4582 2.422597 CCACAAGCCGTTGATGTTAGA 58.577 47.619 0.00 0.00 37.10 2.10
4433 4583 2.811431 CCACAAGCCGTTGATGTTAGAA 59.189 45.455 0.00 0.00 37.10 2.10
4434 4584 3.252215 CCACAAGCCGTTGATGTTAGAAA 59.748 43.478 0.00 0.00 37.10 2.52
4435 4585 4.082787 CCACAAGCCGTTGATGTTAGAAAT 60.083 41.667 0.00 0.00 37.10 2.17
4436 4586 4.853196 CACAAGCCGTTGATGTTAGAAATG 59.147 41.667 0.00 0.00 37.10 2.32
4437 4587 4.759693 ACAAGCCGTTGATGTTAGAAATGA 59.240 37.500 0.00 0.00 37.10 2.57
4438 4588 5.240623 ACAAGCCGTTGATGTTAGAAATGAA 59.759 36.000 0.00 0.00 37.10 2.57
4439 4589 5.957842 AGCCGTTGATGTTAGAAATGAAA 57.042 34.783 0.00 0.00 0.00 2.69
4440 4590 5.699839 AGCCGTTGATGTTAGAAATGAAAC 58.300 37.500 0.00 0.00 0.00 2.78
4441 4591 5.240623 AGCCGTTGATGTTAGAAATGAAACA 59.759 36.000 0.00 0.00 0.00 2.83
4442 4592 5.342259 GCCGTTGATGTTAGAAATGAAACAC 59.658 40.000 0.00 0.00 0.00 3.32
4443 4593 6.668323 CCGTTGATGTTAGAAATGAAACACT 58.332 36.000 0.00 0.00 0.00 3.55
4444 4594 6.797033 CCGTTGATGTTAGAAATGAAACACTC 59.203 38.462 0.00 0.00 0.00 3.51
4445 4595 7.351981 CGTTGATGTTAGAAATGAAACACTCA 58.648 34.615 0.00 0.00 38.81 3.41
4446 4596 7.855409 CGTTGATGTTAGAAATGAAACACTCAA 59.145 33.333 0.00 0.00 37.67 3.02
4447 4597 9.515020 GTTGATGTTAGAAATGAAACACTCAAA 57.485 29.630 11.20 0.00 37.67 2.69
4449 4599 9.515020 TGATGTTAGAAATGAAACACTCAAAAC 57.485 29.630 0.00 0.00 37.67 2.43
4450 4600 9.736023 GATGTTAGAAATGAAACACTCAAAACT 57.264 29.630 0.00 0.00 37.67 2.66
4451 4601 8.909708 TGTTAGAAATGAAACACTCAAAACTG 57.090 30.769 0.00 0.00 37.67 3.16
4452 4602 7.973388 TGTTAGAAATGAAACACTCAAAACTGG 59.027 33.333 0.00 0.00 37.67 4.00
4453 4603 6.773976 AGAAATGAAACACTCAAAACTGGA 57.226 33.333 0.00 0.00 37.67 3.86
4454 4604 6.799512 AGAAATGAAACACTCAAAACTGGAG 58.200 36.000 0.00 0.00 37.67 3.86
4455 4605 6.378280 AGAAATGAAACACTCAAAACTGGAGT 59.622 34.615 0.00 0.00 46.11 3.85
4456 4606 7.556275 AGAAATGAAACACTCAAAACTGGAGTA 59.444 33.333 0.00 0.00 43.47 2.59
4457 4607 7.639113 AATGAAACACTCAAAACTGGAGTAA 57.361 32.000 0.00 0.00 43.47 2.24
4458 4608 7.639113 ATGAAACACTCAAAACTGGAGTAAA 57.361 32.000 0.00 0.00 43.47 2.01
4459 4609 7.639113 TGAAACACTCAAAACTGGAGTAAAT 57.361 32.000 0.00 0.00 43.47 1.40
4460 4610 7.703328 TGAAACACTCAAAACTGGAGTAAATC 58.297 34.615 0.00 0.00 43.47 2.17
4461 4611 7.556275 TGAAACACTCAAAACTGGAGTAAATCT 59.444 33.333 0.00 0.00 43.47 2.40
4462 4612 8.974060 AAACACTCAAAACTGGAGTAAATCTA 57.026 30.769 0.00 0.00 43.47 1.98
4463 4613 8.608844 AACACTCAAAACTGGAGTAAATCTAG 57.391 34.615 0.00 0.00 43.47 2.43
4472 4622 7.784470 ACTGGAGTAAATCTAGTCACTCTTT 57.216 36.000 12.25 0.00 45.96 2.52
4473 4623 7.607250 ACTGGAGTAAATCTAGTCACTCTTTG 58.393 38.462 12.25 7.78 45.96 2.77
4474 4624 7.233757 ACTGGAGTAAATCTAGTCACTCTTTGT 59.766 37.037 12.25 8.17 45.96 2.83
4475 4625 7.603651 TGGAGTAAATCTAGTCACTCTTTGTC 58.396 38.462 12.25 0.00 37.99 3.18
4476 4626 7.451877 TGGAGTAAATCTAGTCACTCTTTGTCT 59.548 37.037 12.25 0.00 37.99 3.41
4477 4627 8.308207 GGAGTAAATCTAGTCACTCTTTGTCTT 58.692 37.037 12.25 0.00 37.99 3.01
4478 4628 9.699703 GAGTAAATCTAGTCACTCTTTGTCTTT 57.300 33.333 0.00 0.00 35.58 2.52
4479 4629 9.482627 AGTAAATCTAGTCACTCTTTGTCTTTG 57.517 33.333 0.00 0.00 0.00 2.77
4480 4630 9.262358 GTAAATCTAGTCACTCTTTGTCTTTGT 57.738 33.333 0.00 0.00 0.00 2.83
4481 4631 8.738645 AAATCTAGTCACTCTTTGTCTTTGTT 57.261 30.769 0.00 0.00 0.00 2.83
4482 4632 8.738645 AATCTAGTCACTCTTTGTCTTTGTTT 57.261 30.769 0.00 0.00 0.00 2.83
4483 4633 8.738645 ATCTAGTCACTCTTTGTCTTTGTTTT 57.261 30.769 0.00 0.00 0.00 2.43
4518 4668 2.617532 GGTCTTCAGCTGGCTTCTGAAT 60.618 50.000 15.13 0.00 45.96 2.57
4542 4692 3.667497 TCTCTCGAATGTTCACTTGCT 57.333 42.857 0.00 0.00 0.00 3.91
4617 4767 7.642669 TGAAATGCTTCTTTTGTAAGTGAGAG 58.357 34.615 0.00 0.00 32.98 3.20
4620 4770 5.428253 TGCTTCTTTTGTAAGTGAGAGTGT 58.572 37.500 0.00 0.00 32.98 3.55
4632 4782 5.636903 AGTGAGAGTGTATTATTGGGCAT 57.363 39.130 0.00 0.00 0.00 4.40
4677 4835 8.128582 GCAAATAGTTATGCTTATGTGCAGTTA 58.871 33.333 0.00 0.00 46.71 2.24
4706 4865 2.742053 CCTGTACCAACGAATTCCTGTG 59.258 50.000 0.00 0.00 0.00 3.66
4764 4924 4.404640 TCGGAGTTCTCAAAGGAGTAAGA 58.595 43.478 2.24 0.00 42.05 2.10
4842 5002 8.372459 TGCTATGTCAAATTATTATACTCGGGT 58.628 33.333 0.00 0.00 0.00 5.28
4895 5055 5.106869 CGTAGTTATGCTAAGTGGCAAACAA 60.107 40.000 13.07 0.17 45.68 2.83
4986 5152 2.685897 GCTTAGTCTCTCACCGTCTCAT 59.314 50.000 0.00 0.00 0.00 2.90
5538 5714 9.579932 AGGAAAATAGCCTCCAGATTTTTATAG 57.420 33.333 0.00 0.00 33.91 1.31
5548 5724 9.282569 CCTCCAGATTTTTATAGAATTCCTCTG 57.717 37.037 0.65 2.72 35.41 3.35
6020 6200 0.824109 TGTTCCGCCATCGAGAATCT 59.176 50.000 0.00 0.00 38.10 2.40
6039 6219 8.103948 AGAATCTGTTCCATCTGTTTTAAGTG 57.896 34.615 0.00 0.00 34.81 3.16
6085 6265 1.123861 TGAGCTGTGCTGGAAGGAGT 61.124 55.000 0.00 0.00 39.88 3.85
6280 6460 0.969894 GACTGGAGCTGTACCTGTGT 59.030 55.000 7.13 0.00 39.12 3.72
6546 6726 0.758685 CCAGGTTTTCCCAACCAGCA 60.759 55.000 6.53 0.00 42.69 4.41
6547 6727 0.675633 CAGGTTTTCCCAACCAGCAG 59.324 55.000 6.53 0.00 42.69 4.24
6595 6775 2.588877 GATGACGATGTGCCCCCG 60.589 66.667 0.00 0.00 0.00 5.73
6907 7087 2.150719 CCCACCACCACCACCACTA 61.151 63.158 0.00 0.00 0.00 2.74
7032 7221 2.156098 AGCTCCCTTTGGTCCAGCA 61.156 57.895 1.80 0.00 32.17 4.41
7052 7241 1.208614 CAGCTTCAGCCTTCGCAAC 59.791 57.895 0.00 0.00 43.38 4.17
7062 7251 2.596923 TTCGCAACCATGGCAGCA 60.597 55.556 23.84 11.66 0.00 4.41
7063 7252 2.537792 CTTCGCAACCATGGCAGCAG 62.538 60.000 23.84 17.37 0.00 4.24
7064 7253 4.789075 CGCAACCATGGCAGCAGC 62.789 66.667 23.84 14.67 41.10 5.25
7282 7485 2.102588 AGCGTCAGTTCTAGTGTTGGTT 59.897 45.455 0.00 0.00 0.00 3.67
7289 7492 7.187480 GTCAGTTCTAGTGTTGGTTTCTTTTC 58.813 38.462 0.00 0.00 0.00 2.29
7293 7496 5.130350 TCTAGTGTTGGTTTCTTTTCCCTG 58.870 41.667 0.00 0.00 0.00 4.45
7334 7537 4.465305 GTGTAAGTATGTGTACACCCCTCT 59.535 45.833 22.91 12.66 42.76 3.69
7404 7608 7.434307 CGTAATAAACATCATAGGAACTGTCGT 59.566 37.037 0.00 0.00 41.52 4.34
7413 7617 2.040178 AGGAACTGTCGTTCTGAACCT 58.960 47.619 14.48 0.86 46.84 3.50
7423 7627 2.155279 GTTCTGAACCTTTGCTCTCCC 58.845 52.381 9.38 0.00 0.00 4.30
7427 7631 0.322906 GAACCTTTGCTCTCCCTGGG 60.323 60.000 6.33 6.33 0.00 4.45
7441 7645 1.548582 CCCTGGGCAAGACATTCTGTT 60.549 52.381 0.00 0.00 0.00 3.16
7442 7646 1.815003 CCTGGGCAAGACATTCTGTTC 59.185 52.381 0.00 0.00 0.00 3.18
7443 7647 1.466167 CTGGGCAAGACATTCTGTTCG 59.534 52.381 0.00 0.00 0.00 3.95
7444 7648 1.202758 TGGGCAAGACATTCTGTTCGT 60.203 47.619 0.00 0.00 0.00 3.85
7445 7649 1.464997 GGGCAAGACATTCTGTTCGTC 59.535 52.381 0.00 0.00 0.00 4.20
7447 7651 1.126846 GCAAGACATTCTGTTCGTCGG 59.873 52.381 0.00 0.00 34.80 4.79
7448 7652 1.726791 CAAGACATTCTGTTCGTCGGG 59.273 52.381 0.00 0.00 34.80 5.14
7450 7654 1.359459 GACATTCTGTTCGTCGGGGC 61.359 60.000 0.00 0.00 0.00 5.80
7452 7656 1.079127 ATTCTGTTCGTCGGGGCTG 60.079 57.895 0.00 0.00 0.00 4.85
7453 7657 1.827399 ATTCTGTTCGTCGGGGCTGT 61.827 55.000 0.00 0.00 0.00 4.40
7455 7659 4.308458 TGTTCGTCGGGGCTGTGG 62.308 66.667 0.00 0.00 0.00 4.17
7488 7695 7.814264 AAAATTTGGCAATAATGTTTGGACA 57.186 28.000 0.00 0.00 40.71 4.02
7524 7731 8.096400 GTTGTAAACGGTTTGAAACTCTTAAC 57.904 34.615 16.05 3.06 36.92 2.01
7525 7732 7.375106 TGTAAACGGTTTGAAACTCTTAACA 57.625 32.000 16.05 5.54 0.00 2.41
7526 7733 7.814642 TGTAAACGGTTTGAAACTCTTAACAA 58.185 30.769 16.05 0.00 0.00 2.83
7530 7737 5.413523 ACGGTTTGAAACTCTTAACAAGTGT 59.586 36.000 8.09 0.00 36.85 3.55
7531 7738 6.072342 ACGGTTTGAAACTCTTAACAAGTGTT 60.072 34.615 8.09 1.75 44.45 3.32
7590 7797 9.753674 AATTATAACTCTGGTCTTCCATTCAAA 57.246 29.630 0.00 0.00 43.43 2.69
7592 7799 9.753674 TTATAACTCTGGTCTTCCATTCAAATT 57.246 29.630 0.00 0.00 43.43 1.82
7608 7818 8.805175 CCATTCAAATTATAGCCATGATGGTTA 58.195 33.333 13.84 12.12 40.46 2.85
7615 7825 2.584492 GCCATGATGGTTAAGGCAAC 57.416 50.000 13.84 0.00 44.59 4.17
7691 7905 1.852157 TTGGTGGATGGGAGCTGTCC 61.852 60.000 0.00 0.00 43.05 4.02
7692 7906 2.187946 GTGGATGGGAGCTGTCCG 59.812 66.667 0.00 0.00 45.05 4.79
7693 7907 3.785859 TGGATGGGAGCTGTCCGC 61.786 66.667 0.00 0.00 45.05 5.54
7694 7908 4.554036 GGATGGGAGCTGTCCGCC 62.554 72.222 0.00 0.00 45.05 6.13
7700 7914 3.474570 GAGCTGTCCGCCCCTCAT 61.475 66.667 0.00 0.00 40.39 2.90
7701 7915 3.746949 GAGCTGTCCGCCCCTCATG 62.747 68.421 0.00 0.00 40.39 3.07
7702 7916 4.101448 GCTGTCCGCCCCTCATGT 62.101 66.667 0.00 0.00 0.00 3.21
7703 7917 2.671070 CTGTCCGCCCCTCATGTT 59.329 61.111 0.00 0.00 0.00 2.71
7704 7918 1.002134 CTGTCCGCCCCTCATGTTT 60.002 57.895 0.00 0.00 0.00 2.83
7830 8054 6.840780 AGCACCTTTTATCTGCAAAGTAAT 57.159 33.333 0.00 0.00 33.06 1.89
7944 8225 3.019564 AGCAATATGTTCAGAACAGGGC 58.980 45.455 20.55 18.57 45.95 5.19
7954 8235 1.039856 AGAACAGGGCGTTGCATTTT 58.960 45.000 0.00 0.00 38.19 1.82
7998 8279 2.599677 GGGGATCTACTTCACGGATCT 58.400 52.381 0.00 0.00 36.88 2.75
8057 8342 8.353684 TGTCTGTAACTACAAAAGAGAAGAGAG 58.646 37.037 0.00 0.00 35.50 3.20
8080 8377 7.064966 AGAGCATTTATTTATTTTTGCAGCACC 59.935 33.333 0.00 0.00 32.66 5.01
8101 8398 3.364062 CATCGCTACTTTGGACTACGAG 58.636 50.000 0.00 0.00 0.00 4.18
8102 8399 1.131883 TCGCTACTTTGGACTACGAGC 59.868 52.381 0.00 0.00 0.00 5.03
8164 8463 9.198065 CATTCAAAAAGACACGTTTCAAAATTC 57.802 29.630 4.26 0.00 0.00 2.17
8233 8532 6.671614 ACAAGTGTGTAAATTTTCACGAGA 57.328 33.333 19.16 3.59 35.72 4.04
8298 8599 7.450124 TTGTTGGTTTTAACAGTGAACAGTA 57.550 32.000 0.00 0.00 41.18 2.74
8303 8604 6.600032 TGGTTTTAACAGTGAACAGTACACAT 59.400 34.615 0.00 0.00 40.25 3.21
8316 8617 7.801716 AACAGTACACATAATGTTCACTGTT 57.198 32.000 20.90 20.90 44.19 3.16
8317 8618 7.801716 ACAGTACACATAATGTTCACTGTTT 57.198 32.000 14.49 0.47 44.12 2.83
8329 8630 8.721019 AATGTTCACTGTTTTCAAAATCACAT 57.279 26.923 0.00 0.00 0.00 3.21
8410 8711 6.915843 CACACGTGCAGTATACATCTGTATTA 59.084 38.462 17.22 0.00 41.18 0.98
8480 8781 0.689080 AGGACCATGGAGCTCGACAT 60.689 55.000 21.47 3.49 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.565416 GGTACTTTATTACTTACATTGCCCATC 58.435 37.037 0.00 0.00 0.00 3.51
2 3 6.829811 GGGTACTTTATTACTTACATTGCCCA 59.170 38.462 0.00 0.00 0.00 5.36
3 4 6.017687 CGGGTACTTTATTACTTACATTGCCC 60.018 42.308 0.00 0.00 0.00 5.36
5 6 7.543947 ACGGGTACTTTATTACTTACATTGC 57.456 36.000 0.00 0.00 0.00 3.56
7 8 8.938906 CACAACGGGTACTTTATTACTTACATT 58.061 33.333 0.00 0.00 0.00 2.71
11 12 8.147058 TCAACACAACGGGTACTTTATTACTTA 58.853 33.333 0.00 0.00 0.00 2.24
13 14 6.523840 TCAACACAACGGGTACTTTATTACT 58.476 36.000 0.00 0.00 0.00 2.24
14 15 6.783892 TCAACACAACGGGTACTTTATTAC 57.216 37.500 0.00 0.00 0.00 1.89
15 16 6.128227 GCATCAACACAACGGGTACTTTATTA 60.128 38.462 0.00 0.00 0.00 0.98
16 17 5.335348 GCATCAACACAACGGGTACTTTATT 60.335 40.000 0.00 0.00 0.00 1.40
17 18 4.155280 GCATCAACACAACGGGTACTTTAT 59.845 41.667 0.00 0.00 0.00 1.40
18 19 3.499157 GCATCAACACAACGGGTACTTTA 59.501 43.478 0.00 0.00 0.00 1.85
19 20 2.292292 GCATCAACACAACGGGTACTTT 59.708 45.455 0.00 0.00 0.00 2.66
20 21 1.877443 GCATCAACACAACGGGTACTT 59.123 47.619 0.00 0.00 0.00 2.24
21 22 1.202710 TGCATCAACACAACGGGTACT 60.203 47.619 0.00 0.00 0.00 2.73
23 24 1.231221 GTGCATCAACACAACGGGTA 58.769 50.000 0.00 0.00 40.40 3.69
24 25 2.029743 GTGCATCAACACAACGGGT 58.970 52.632 0.00 0.00 40.40 5.28
25 26 4.942090 GTGCATCAACACAACGGG 57.058 55.556 0.00 0.00 40.40 5.28
31 32 3.650594 TGATGTGGGTGTGCATCAACAC 61.651 50.000 4.94 10.64 45.60 3.32
32 33 1.246649 GATGTGGGTGTGCATCAACA 58.753 50.000 6.65 0.00 40.68 3.33
33 34 1.246649 TGATGTGGGTGTGCATCAAC 58.753 50.000 4.94 0.00 45.60 3.18
34 35 3.741707 TGATGTGGGTGTGCATCAA 57.258 47.368 4.94 0.00 45.60 2.57
36 37 1.820519 ACAATGATGTGGGTGTGCATC 59.179 47.619 0.00 0.00 38.69 3.91
37 38 1.927487 ACAATGATGTGGGTGTGCAT 58.073 45.000 0.00 0.00 38.69 3.96
38 39 3.435846 ACAATGATGTGGGTGTGCA 57.564 47.368 0.00 0.00 38.69 4.57
66 67 4.233789 TCAAGTTTTCGGCACAAATATGC 58.766 39.130 0.00 0.00 45.34 3.14
67 68 6.092092 TGATCAAGTTTTCGGCACAAATATG 58.908 36.000 0.00 0.00 0.00 1.78
69 70 5.697473 TGATCAAGTTTTCGGCACAAATA 57.303 34.783 0.00 0.00 0.00 1.40
72 73 3.629855 TCTTGATCAAGTTTTCGGCACAA 59.370 39.130 29.80 7.97 39.38 3.33
74 75 3.498397 TCTCTTGATCAAGTTTTCGGCAC 59.502 43.478 29.80 0.00 39.38 5.01
76 77 3.126000 CCTCTCTTGATCAAGTTTTCGGC 59.874 47.826 29.80 0.00 39.38 5.54
77 78 3.126000 GCCTCTCTTGATCAAGTTTTCGG 59.874 47.826 29.80 23.26 39.38 4.30
78 79 3.181526 CGCCTCTCTTGATCAAGTTTTCG 60.182 47.826 29.80 22.74 39.38 3.46
79 80 3.425492 GCGCCTCTCTTGATCAAGTTTTC 60.425 47.826 29.80 17.10 39.38 2.29
81 82 2.079925 GCGCCTCTCTTGATCAAGTTT 58.920 47.619 29.80 0.00 39.38 2.66
82 83 1.002430 TGCGCCTCTCTTGATCAAGTT 59.998 47.619 29.80 0.00 39.38 2.66
83 84 0.610174 TGCGCCTCTCTTGATCAAGT 59.390 50.000 29.80 0.00 39.38 3.16
86 87 0.897621 TTCTGCGCCTCTCTTGATCA 59.102 50.000 4.18 0.00 0.00 2.92
87 88 1.663135 GTTTCTGCGCCTCTCTTGATC 59.337 52.381 4.18 0.00 0.00 2.92
88 89 1.002430 TGTTTCTGCGCCTCTCTTGAT 59.998 47.619 4.18 0.00 0.00 2.57
89 90 0.392706 TGTTTCTGCGCCTCTCTTGA 59.607 50.000 4.18 0.00 0.00 3.02
90 91 1.069636 GTTGTTTCTGCGCCTCTCTTG 60.070 52.381 4.18 0.00 0.00 3.02
92 93 0.394565 AGTTGTTTCTGCGCCTCTCT 59.605 50.000 4.18 0.00 0.00 3.10
93 94 1.195674 GAAGTTGTTTCTGCGCCTCTC 59.804 52.381 4.18 0.00 32.83 3.20
94 95 1.202698 AGAAGTTGTTTCTGCGCCTCT 60.203 47.619 4.18 0.00 44.46 3.69
95 96 1.230324 AGAAGTTGTTTCTGCGCCTC 58.770 50.000 4.18 0.00 44.46 4.70
96 97 3.403936 AGAAGTTGTTTCTGCGCCT 57.596 47.368 4.18 0.00 44.46 5.52
103 104 1.678101 AGCACCTGCAGAAGTTGTTTC 59.322 47.619 17.39 0.00 45.16 2.78
104 105 1.767759 AGCACCTGCAGAAGTTGTTT 58.232 45.000 17.39 0.00 45.16 2.83
105 106 1.767759 AAGCACCTGCAGAAGTTGTT 58.232 45.000 17.39 1.66 45.16 2.83
107 108 3.254166 ACATTAAGCACCTGCAGAAGTTG 59.746 43.478 17.39 7.72 45.16 3.16
108 109 3.490348 ACATTAAGCACCTGCAGAAGTT 58.510 40.909 17.39 5.57 45.16 2.66
109 110 3.077359 GACATTAAGCACCTGCAGAAGT 58.923 45.455 17.39 1.80 45.16 3.01
110 111 3.341823 AGACATTAAGCACCTGCAGAAG 58.658 45.455 17.39 8.22 45.16 2.85
111 112 3.423539 AGACATTAAGCACCTGCAGAA 57.576 42.857 17.39 0.00 45.16 3.02
112 113 3.076621 CAAGACATTAAGCACCTGCAGA 58.923 45.455 17.39 0.00 45.16 4.26
113 114 2.816087 ACAAGACATTAAGCACCTGCAG 59.184 45.455 6.78 6.78 45.16 4.41
114 115 2.862541 ACAAGACATTAAGCACCTGCA 58.137 42.857 0.00 0.00 45.16 4.41
116 117 5.617751 GCACTTACAAGACATTAAGCACCTG 60.618 44.000 0.00 0.00 0.00 4.00
118 119 4.215399 TGCACTTACAAGACATTAAGCACC 59.785 41.667 0.00 0.00 0.00 5.01
119 120 5.356882 TGCACTTACAAGACATTAAGCAC 57.643 39.130 0.00 0.00 0.00 4.40
120 121 7.552330 TCATATGCACTTACAAGACATTAAGCA 59.448 33.333 0.00 0.00 31.96 3.91
122 123 8.338259 GGTCATATGCACTTACAAGACATTAAG 58.662 37.037 0.00 0.00 31.96 1.85
123 124 7.011016 CGGTCATATGCACTTACAAGACATTAA 59.989 37.037 0.00 0.00 31.96 1.40
126 127 4.811024 CGGTCATATGCACTTACAAGACAT 59.189 41.667 0.00 2.42 33.37 3.06
127 128 4.180817 CGGTCATATGCACTTACAAGACA 58.819 43.478 0.00 0.00 0.00 3.41
128 129 3.555956 CCGGTCATATGCACTTACAAGAC 59.444 47.826 0.00 0.00 0.00 3.01
130 131 3.531538 ACCGGTCATATGCACTTACAAG 58.468 45.455 0.00 0.00 0.00 3.16
131 132 3.620427 ACCGGTCATATGCACTTACAA 57.380 42.857 0.00 0.00 0.00 2.41
132 133 3.055747 TCAACCGGTCATATGCACTTACA 60.056 43.478 8.04 0.00 0.00 2.41
133 134 3.308866 GTCAACCGGTCATATGCACTTAC 59.691 47.826 8.04 0.00 0.00 2.34
134 135 3.055747 TGTCAACCGGTCATATGCACTTA 60.056 43.478 8.04 0.00 0.00 2.24
136 137 1.277842 TGTCAACCGGTCATATGCACT 59.722 47.619 8.04 0.00 0.00 4.40
137 138 1.732941 TGTCAACCGGTCATATGCAC 58.267 50.000 8.04 3.77 0.00 4.57
139 140 1.064060 GCTTGTCAACCGGTCATATGC 59.936 52.381 8.04 6.47 0.00 3.14
140 141 2.095853 GTGCTTGTCAACCGGTCATATG 59.904 50.000 8.04 1.60 0.00 1.78
142 143 1.070914 TGTGCTTGTCAACCGGTCATA 59.929 47.619 8.04 0.00 0.00 2.15
143 144 0.179032 TGTGCTTGTCAACCGGTCAT 60.179 50.000 8.04 0.00 0.00 3.06
144 145 0.393132 TTGTGCTTGTCAACCGGTCA 60.393 50.000 8.04 0.00 0.00 4.02
147 148 1.336440 TGAATTGTGCTTGTCAACCGG 59.664 47.619 0.00 0.00 0.00 5.28
148 149 2.772568 TGAATTGTGCTTGTCAACCG 57.227 45.000 0.00 0.00 0.00 4.44
150 151 6.586868 TTTTCATGAATTGTGCTTGTCAAC 57.413 33.333 9.40 0.00 0.00 3.18
152 153 9.491675 AAATATTTTCATGAATTGTGCTTGTCA 57.508 25.926 9.40 0.00 0.00 3.58
157 158 9.101655 GGCTTAAATATTTTCATGAATTGTGCT 57.898 29.630 9.40 0.00 0.00 4.40
158 159 9.101655 AGGCTTAAATATTTTCATGAATTGTGC 57.898 29.630 9.40 8.59 0.00 4.57
193 194 9.396022 CTTCCTTTAGCCATTTAGAGTTTGATA 57.604 33.333 0.00 0.00 0.00 2.15
195 196 6.659242 CCTTCCTTTAGCCATTTAGAGTTTGA 59.341 38.462 0.00 0.00 0.00 2.69
196 197 6.659242 TCCTTCCTTTAGCCATTTAGAGTTTG 59.341 38.462 0.00 0.00 0.00 2.93
198 199 6.388619 TCCTTCCTTTAGCCATTTAGAGTT 57.611 37.500 0.00 0.00 0.00 3.01
199 200 6.388619 TTCCTTCCTTTAGCCATTTAGAGT 57.611 37.500 0.00 0.00 0.00 3.24
200 201 7.888250 ATTTCCTTCCTTTAGCCATTTAGAG 57.112 36.000 0.00 0.00 0.00 2.43
201 202 9.185680 GTAATTTCCTTCCTTTAGCCATTTAGA 57.814 33.333 0.00 0.00 0.00 2.10
204 205 6.728632 TGGTAATTTCCTTCCTTTAGCCATTT 59.271 34.615 2.53 0.00 0.00 2.32
206 207 5.837829 TGGTAATTTCCTTCCTTTAGCCAT 58.162 37.500 2.53 0.00 0.00 4.40
207 208 5.263872 TGGTAATTTCCTTCCTTTAGCCA 57.736 39.130 2.53 0.00 0.00 4.75
208 209 5.105473 GGTTGGTAATTTCCTTCCTTTAGCC 60.105 44.000 2.53 0.00 0.00 3.93
209 210 5.479027 TGGTTGGTAATTTCCTTCCTTTAGC 59.521 40.000 2.53 0.00 0.00 3.09
210 211 6.350194 GCTGGTTGGTAATTTCCTTCCTTTAG 60.350 42.308 2.53 1.30 0.00 1.85
211 212 5.479027 GCTGGTTGGTAATTTCCTTCCTTTA 59.521 40.000 2.53 0.00 0.00 1.85
213 214 3.832490 GCTGGTTGGTAATTTCCTTCCTT 59.168 43.478 2.53 0.00 0.00 3.36
214 215 3.181423 TGCTGGTTGGTAATTTCCTTCCT 60.181 43.478 2.53 0.00 0.00 3.36
216 217 3.367395 GCTGCTGGTTGGTAATTTCCTTC 60.367 47.826 2.53 0.00 0.00 3.46
219 220 1.204704 GGCTGCTGGTTGGTAATTTCC 59.795 52.381 0.00 0.00 0.00 3.13
220 221 1.135402 CGGCTGCTGGTTGGTAATTTC 60.135 52.381 0.00 0.00 0.00 2.17
221 222 0.887933 CGGCTGCTGGTTGGTAATTT 59.112 50.000 0.00 0.00 0.00 1.82
222 223 0.037590 TCGGCTGCTGGTTGGTAATT 59.962 50.000 8.89 0.00 0.00 1.40
226 227 4.335647 CCTCGGCTGCTGGTTGGT 62.336 66.667 8.89 0.00 0.00 3.67
235 236 1.089481 TTATTGCTTCGCCTCGGCTG 61.089 55.000 6.35 0.16 39.32 4.85
237 238 0.450184 TTTTATTGCTTCGCCTCGGC 59.550 50.000 0.00 0.00 37.85 5.54
238 239 2.614057 AGATTTTATTGCTTCGCCTCGG 59.386 45.455 0.00 0.00 0.00 4.63
239 240 3.951979 AGATTTTATTGCTTCGCCTCG 57.048 42.857 0.00 0.00 0.00 4.63
240 241 5.527582 TCCTTAGATTTTATTGCTTCGCCTC 59.472 40.000 0.00 0.00 0.00 4.70
241 242 5.297029 GTCCTTAGATTTTATTGCTTCGCCT 59.703 40.000 0.00 0.00 0.00 5.52
242 243 5.297029 AGTCCTTAGATTTTATTGCTTCGCC 59.703 40.000 0.00 0.00 0.00 5.54
243 244 6.364945 AGTCCTTAGATTTTATTGCTTCGC 57.635 37.500 0.00 0.00 0.00 4.70
244 245 8.202745 AGAAGTCCTTAGATTTTATTGCTTCG 57.797 34.615 0.00 0.00 35.27 3.79
253 254 9.354673 TGTGAATCAAAGAAGTCCTTAGATTTT 57.645 29.630 0.00 0.00 34.00 1.82
254 255 8.924511 TGTGAATCAAAGAAGTCCTTAGATTT 57.075 30.769 0.00 0.00 34.00 2.17
255 256 8.954350 CATGTGAATCAAAGAAGTCCTTAGATT 58.046 33.333 0.00 0.00 34.00 2.40
256 257 7.555554 CCATGTGAATCAAAGAAGTCCTTAGAT 59.444 37.037 0.00 0.00 34.00 1.98
257 258 6.881065 CCATGTGAATCAAAGAAGTCCTTAGA 59.119 38.462 0.00 0.00 34.00 2.10
322 323 9.857656 ATCACATTCAATAGGATATGACACTTT 57.142 29.630 0.00 0.00 0.00 2.66
375 376 8.827177 TTTACACGGATATCATGTATTTCCTC 57.173 34.615 15.88 0.00 34.46 3.71
411 412 7.866729 TGCAAATTTATGTAGTTTTCGAGTCA 58.133 30.769 0.00 0.00 0.00 3.41
518 519 6.477688 GGGATCATCAATTTTGCAATGTACTG 59.522 38.462 0.00 0.00 0.00 2.74
522 523 5.180271 GTGGGATCATCAATTTTGCAATGT 58.820 37.500 0.00 0.00 0.00 2.71
529 530 5.024785 TGTGGATGTGGGATCATCAATTTT 58.975 37.500 8.56 0.00 44.00 1.82
538 539 2.214376 TGGTTTGTGGATGTGGGATC 57.786 50.000 0.00 0.00 0.00 3.36
543 544 5.452078 ACTGTAAATGGTTTGTGGATGTG 57.548 39.130 0.00 0.00 0.00 3.21
550 551 9.490379 TTTGTAAAACAACTGTAAATGGTTTGT 57.510 25.926 4.65 0.00 37.90 2.83
582 583 7.138081 TGGCGTTGATTTGCTATTTGTATATG 58.862 34.615 0.00 0.00 0.00 1.78
584 585 6.685527 TGGCGTTGATTTGCTATTTGTATA 57.314 33.333 0.00 0.00 0.00 1.47
688 690 9.686683 AGTCATAATACTTGATAAAGTTTGGCT 57.313 29.630 0.00 0.00 34.37 4.75
716 718 4.627035 TCACTCGCATGTTAGATTTGACTG 59.373 41.667 0.00 0.00 0.00 3.51
722 724 7.692291 CGTTTTTATTCACTCGCATGTTAGATT 59.308 33.333 0.00 0.00 0.00 2.40
725 727 5.732647 CCGTTTTTATTCACTCGCATGTTAG 59.267 40.000 0.00 0.00 0.00 2.34
734 736 3.946606 TCCCCTCCGTTTTTATTCACTC 58.053 45.455 0.00 0.00 0.00 3.51
735 737 4.077108 GTTCCCCTCCGTTTTTATTCACT 58.923 43.478 0.00 0.00 0.00 3.41
736 738 3.822167 TGTTCCCCTCCGTTTTTATTCAC 59.178 43.478 0.00 0.00 0.00 3.18
764 767 9.784531 TTCATATGATTTTTAGAGGAGCTTAGG 57.215 33.333 6.17 0.00 0.00 2.69
815 818 6.798482 TGATTCGCAGCAAATTGATAAGATT 58.202 32.000 0.00 0.00 0.00 2.40
816 819 6.381481 TGATTCGCAGCAAATTGATAAGAT 57.619 33.333 0.00 0.00 0.00 2.40
823 826 4.491924 GCTCATTTGATTCGCAGCAAATTG 60.492 41.667 8.55 6.40 41.37 2.32
863 868 6.477033 AGACATTAACTCGGATTTTCAGATCG 59.523 38.462 0.00 0.00 0.00 3.69
938 947 3.714001 CTGCTCTGCCTCTGCCCA 61.714 66.667 0.00 0.00 36.33 5.36
939 948 3.388703 CTCTGCTCTGCCTCTGCCC 62.389 68.421 0.00 0.00 36.33 5.36
941 950 2.187424 CCTCTGCTCTGCCTCTGC 59.813 66.667 0.00 0.00 38.26 4.26
942 951 2.187424 GCCTCTGCTCTGCCTCTG 59.813 66.667 0.00 0.00 33.53 3.35
966 975 2.462255 TTACGGCGACTCGTGTCACC 62.462 60.000 16.62 15.18 43.70 4.02
980 989 0.466963 GGTAGATGGGTGGGTTACGG 59.533 60.000 0.00 0.00 0.00 4.02
1146 1208 4.548513 CGGAGGAGGAGGGAGGGG 62.549 77.778 0.00 0.00 0.00 4.79
1217 1279 4.452251 TTAGCCCTCGCCCCTCGA 62.452 66.667 0.00 0.00 46.29 4.04
1302 1364 2.303022 CCGTCTATGCATACCTTGGGAT 59.697 50.000 1.16 0.00 0.00 3.85
1347 1409 3.407698 TCAGCGGCAGATGTAAGAAAAA 58.592 40.909 1.45 0.00 34.90 1.94
1352 1414 1.009829 GGTTCAGCGGCAGATGTAAG 58.990 55.000 1.45 0.00 34.90 2.34
1377 1439 5.970023 CAGCTAGTACGTACTACCAAATCAC 59.030 44.000 27.51 11.77 37.73 3.06
1419 1481 4.484912 ACCAAACTAAGCCAAACCCAATA 58.515 39.130 0.00 0.00 0.00 1.90
1431 1493 4.911610 CGTGCTTCAATCAACCAAACTAAG 59.088 41.667 0.00 0.00 0.00 2.18
1457 1519 1.030457 AAGGGACACTATCGCCGTAG 58.970 55.000 0.00 0.00 41.22 3.51
1458 1520 0.742505 CAAGGGACACTATCGCCGTA 59.257 55.000 0.00 0.00 41.22 4.02
1460 1522 1.883084 GCAAGGGACACTATCGCCG 60.883 63.158 0.00 0.00 41.22 6.46
1461 1523 0.750850 TAGCAAGGGACACTATCGCC 59.249 55.000 0.00 0.00 41.22 5.54
1462 1524 1.409427 ACTAGCAAGGGACACTATCGC 59.591 52.381 0.00 0.00 40.60 4.58
1463 1525 2.427453 ACACTAGCAAGGGACACTATCG 59.573 50.000 0.00 0.00 0.00 2.92
1464 1526 3.430929 CCACACTAGCAAGGGACACTATC 60.431 52.174 0.00 0.00 0.00 2.08
1465 1527 2.501723 CCACACTAGCAAGGGACACTAT 59.498 50.000 0.00 0.00 0.00 2.12
1466 1528 1.899814 CCACACTAGCAAGGGACACTA 59.100 52.381 0.00 0.00 0.00 2.74
1467 1529 0.687354 CCACACTAGCAAGGGACACT 59.313 55.000 0.00 0.00 0.00 3.55
1468 1530 0.685097 TCCACACTAGCAAGGGACAC 59.315 55.000 0.00 0.00 0.00 3.67
1505 1567 6.576244 GCATACATATGTACATAGAGCCCCAA 60.576 42.308 17.69 0.00 36.11 4.12
1506 1568 5.104941 GCATACATATGTACATAGAGCCCCA 60.105 44.000 17.69 0.00 36.11 4.96
1507 1569 5.129485 AGCATACATATGTACATAGAGCCCC 59.871 44.000 17.69 8.07 36.11 5.80
1508 1570 6.045318 CAGCATACATATGTACATAGAGCCC 58.955 44.000 17.69 7.63 36.11 5.19
1509 1571 6.533012 CACAGCATACATATGTACATAGAGCC 59.467 42.308 17.69 7.17 36.11 4.70
1510 1572 7.315890 TCACAGCATACATATGTACATAGAGC 58.684 38.462 17.69 16.79 36.11 4.09
1511 1573 9.866798 AATCACAGCATACATATGTACATAGAG 57.133 33.333 17.69 16.40 36.11 2.43
1520 1582 7.125536 ACATCGAAATCACAGCATACATATG 57.874 36.000 0.00 0.00 36.78 1.78
1567 1629 1.453155 ACAAACTAGAAGCCCATGCG 58.547 50.000 0.00 0.00 44.33 4.73
1569 1631 4.832248 TGTCTACAAACTAGAAGCCCATG 58.168 43.478 0.00 0.00 0.00 3.66
1575 1637 6.031751 AGCCTCTTGTCTACAAACTAGAAG 57.968 41.667 0.00 0.00 35.15 2.85
1596 1658 7.066284 TGCTCATCTTATAAGGAAAACTGAAGC 59.934 37.037 12.54 8.97 0.00 3.86
1599 1661 7.624549 ACTGCTCATCTTATAAGGAAAACTGA 58.375 34.615 12.54 5.87 0.00 3.41
1600 1662 7.856145 ACTGCTCATCTTATAAGGAAAACTG 57.144 36.000 12.54 6.80 0.00 3.16
1602 1664 9.601217 TCTAACTGCTCATCTTATAAGGAAAAC 57.399 33.333 12.54 1.48 0.00 2.43
1659 1721 7.707035 AGATGAAAAACAGGACACTCGTATATC 59.293 37.037 0.00 0.00 0.00 1.63
1664 1731 4.073293 AGATGAAAAACAGGACACTCGT 57.927 40.909 0.00 0.00 0.00 4.18
1665 1732 5.424121 AAAGATGAAAAACAGGACACTCG 57.576 39.130 0.00 0.00 0.00 4.18
1686 1753 5.531122 ACTGCTCTCTGTGTAGTTTGTAA 57.469 39.130 0.00 0.00 0.00 2.41
1694 1761 2.698274 TGTTCCAACTGCTCTCTGTGTA 59.302 45.455 0.00 0.00 0.00 2.90
1705 1772 6.977502 TGTGTTAAAACATGATGTTCCAACTG 59.022 34.615 23.59 0.00 40.14 3.16
1708 1775 8.954950 ATTTGTGTTAAAACATGATGTTCCAA 57.045 26.923 11.70 5.92 40.14 3.53
1709 1776 8.954950 AATTTGTGTTAAAACATGATGTTCCA 57.045 26.923 11.70 3.87 40.14 3.53
1710 1777 9.649024 CAAATTTGTGTTAAAACATGATGTTCC 57.351 29.630 11.70 1.34 40.14 3.62
1743 1810 6.565234 CACAGGACCTAAGTTCTACAGTATG 58.435 44.000 0.00 0.00 32.63 2.39
1744 1811 5.127356 GCACAGGACCTAAGTTCTACAGTAT 59.873 44.000 0.00 0.00 27.33 2.12
1747 1814 3.258372 TGCACAGGACCTAAGTTCTACAG 59.742 47.826 0.00 0.00 27.33 2.74
1772 1839 3.304559 GCGCTAGCATATAGAACCAATCG 59.695 47.826 16.45 0.00 44.35 3.34
1779 1846 0.530744 CCCCGCGCTAGCATATAGAA 59.469 55.000 16.45 0.00 45.49 2.10
1780 1847 1.945354 GCCCCGCGCTAGCATATAGA 61.945 60.000 16.45 0.00 45.49 1.98
1781 1848 1.519455 GCCCCGCGCTAGCATATAG 60.519 63.158 16.45 0.92 45.49 1.31
1782 1849 2.577059 GCCCCGCGCTAGCATATA 59.423 61.111 16.45 0.00 45.49 0.86
1792 1859 4.054825 AATTGCACAAGCCCCGCG 62.055 61.111 0.00 0.00 41.13 6.46
1793 1860 2.229690 ATCAATTGCACAAGCCCCGC 62.230 55.000 0.00 0.00 41.13 6.13
1794 1861 0.179129 GATCAATTGCACAAGCCCCG 60.179 55.000 0.00 0.00 41.13 5.73
1795 1862 0.179129 CGATCAATTGCACAAGCCCC 60.179 55.000 0.00 0.00 41.13 5.80
1796 1863 0.803380 GCGATCAATTGCACAAGCCC 60.803 55.000 0.00 0.00 41.13 5.19
1797 1864 0.109179 TGCGATCAATTGCACAAGCC 60.109 50.000 0.00 0.00 42.04 4.35
1798 1865 3.404978 TGCGATCAATTGCACAAGC 57.595 47.368 0.00 2.72 42.04 4.01
1808 1875 1.521580 TGCTGTGTTGATGCGATCAA 58.478 45.000 7.27 7.27 46.30 2.57
1809 1876 1.399089 CATGCTGTGTTGATGCGATCA 59.601 47.619 0.00 0.00 37.55 2.92
1810 1877 1.268386 CCATGCTGTGTTGATGCGATC 60.268 52.381 0.00 0.00 0.00 3.69
1811 1878 0.736636 CCATGCTGTGTTGATGCGAT 59.263 50.000 0.00 0.00 0.00 4.58
1812 1879 1.307355 CCCATGCTGTGTTGATGCGA 61.307 55.000 0.00 0.00 0.00 5.10
1813 1880 1.138036 CCCATGCTGTGTTGATGCG 59.862 57.895 0.00 0.00 0.00 4.73
1814 1881 1.153706 GCCCATGCTGTGTTGATGC 60.154 57.895 0.00 0.00 33.53 3.91
1817 1884 1.902918 GTGGCCCATGCTGTGTTGA 60.903 57.895 0.00 0.00 37.74 3.18
1829 1896 4.265056 ACAACTCCGGTGTGGCCC 62.265 66.667 10.44 0.00 37.80 5.80
1836 1903 2.423577 GCACTAATTCACAACTCCGGT 58.576 47.619 0.00 0.00 0.00 5.28
1837 1904 1.393539 CGCACTAATTCACAACTCCGG 59.606 52.381 0.00 0.00 0.00 5.14
1838 1905 1.393539 CCGCACTAATTCACAACTCCG 59.606 52.381 0.00 0.00 0.00 4.63
1839 1906 2.695359 TCCGCACTAATTCACAACTCC 58.305 47.619 0.00 0.00 0.00 3.85
1840 1907 3.746492 ACTTCCGCACTAATTCACAACTC 59.254 43.478 0.00 0.00 0.00 3.01
1841 1908 3.740115 ACTTCCGCACTAATTCACAACT 58.260 40.909 0.00 0.00 0.00 3.16
1842 1909 4.483476 AACTTCCGCACTAATTCACAAC 57.517 40.909 0.00 0.00 0.00 3.32
1857 1924 9.044150 TGAATGATGAAATGAAACAAAACTTCC 57.956 29.630 0.00 0.00 0.00 3.46
1865 1932 8.610248 AAAAGCATGAATGATGAAATGAAACA 57.390 26.923 0.00 0.00 33.31 2.83
1885 1952 8.906693 GTTGATGAAGCTTAAAAGAGTAAAAGC 58.093 33.333 0.00 0.00 43.66 3.51
1887 1954 9.950680 CAGTTGATGAAGCTTAAAAGAGTAAAA 57.049 29.630 0.00 0.00 0.00 1.52
1888 1955 9.337396 TCAGTTGATGAAGCTTAAAAGAGTAAA 57.663 29.630 0.00 0.00 34.02 2.01
1889 1956 8.902540 TCAGTTGATGAAGCTTAAAAGAGTAA 57.097 30.769 0.00 0.00 34.02 2.24
1890 1957 9.507329 AATCAGTTGATGAAGCTTAAAAGAGTA 57.493 29.630 0.00 0.00 42.53 2.59
1891 1958 7.992754 ATCAGTTGATGAAGCTTAAAAGAGT 57.007 32.000 0.00 0.00 42.53 3.24
1934 2009 2.228343 CAGCCTCTTTTCAAAGCTCCAG 59.772 50.000 0.00 0.00 35.99 3.86
1959 2034 2.620585 GCCCTGCTTTGATAACTCCATC 59.379 50.000 0.00 0.00 0.00 3.51
2041 2116 0.037790 GCGGGATATCCAGACTGAGC 60.038 60.000 24.22 12.48 37.91 4.26
2047 2122 1.399744 AACGCAGCGGGATATCCAGA 61.400 55.000 24.22 0.00 37.91 3.86
2052 2127 1.204941 GGATAGAACGCAGCGGGATAT 59.795 52.381 21.15 13.16 0.00 1.63
2064 2139 3.007398 CAGCAGATAGGGGTGGATAGAAC 59.993 52.174 0.00 0.00 0.00 3.01
2183 2258 1.072331 GTGAAGTCTCTGGCCTGGAAA 59.928 52.381 10.07 0.00 0.00 3.13
2211 2286 0.323360 TGCTTACAGATTGCACCCCC 60.323 55.000 0.00 0.00 0.00 5.40
2212 2287 3.264574 TGCTTACAGATTGCACCCC 57.735 52.632 0.00 0.00 0.00 4.95
2433 2508 3.257393 CTCCCTGAACTTTGATCTCACG 58.743 50.000 0.00 0.00 0.00 4.35
2475 2550 1.211212 TCCTGCTGGTCAGAATCCATG 59.789 52.381 9.73 0.00 45.72 3.66
2610 2685 3.863142 GCATTGTCTGCCTCTGAATTT 57.137 42.857 0.00 0.00 45.66 1.82
2712 2787 3.829886 AGTTGTTGTTGTGTGTCACTG 57.170 42.857 4.27 0.00 35.11 3.66
2713 2788 5.619086 GCTTTAGTTGTTGTTGTGTGTCACT 60.619 40.000 4.27 0.00 35.11 3.41
2714 2789 4.557301 GCTTTAGTTGTTGTTGTGTGTCAC 59.443 41.667 0.00 0.00 34.56 3.67
2715 2790 4.216472 TGCTTTAGTTGTTGTTGTGTGTCA 59.784 37.500 0.00 0.00 0.00 3.58
2716 2791 4.557301 GTGCTTTAGTTGTTGTTGTGTGTC 59.443 41.667 0.00 0.00 0.00 3.67
2717 2792 4.481463 GTGCTTTAGTTGTTGTTGTGTGT 58.519 39.130 0.00 0.00 0.00 3.72
2718 2793 3.857093 GGTGCTTTAGTTGTTGTTGTGTG 59.143 43.478 0.00 0.00 0.00 3.82
2724 2799 3.898482 AGGAAGGTGCTTTAGTTGTTGT 58.102 40.909 0.00 0.00 0.00 3.32
2830 2905 1.751927 GTTCAGCCATCCCAGCAGG 60.752 63.158 0.00 0.00 0.00 4.85
2842 2917 0.663153 GGTTGTGTCACAGGTTCAGC 59.337 55.000 5.67 0.00 0.00 4.26
2952 3027 1.065199 CCCTTATCTGTTGCTGCCTCA 60.065 52.381 0.00 0.00 0.00 3.86
3425 3500 6.106673 ACTTCTACACCAGTTTTATCATCCG 58.893 40.000 0.00 0.00 0.00 4.18
3678 3753 2.426522 TCACTGAGATCTTTTTGCGGG 58.573 47.619 0.00 0.00 0.00 6.13
3726 3801 4.895889 TCTGTCTCAGGAAGTTTCTCAGAA 59.104 41.667 0.00 0.00 31.51 3.02
3897 3972 2.672961 TGATTTTCTCTCCATCGCGT 57.327 45.000 5.77 0.00 0.00 6.01
3910 3985 4.953781 TCTCTGGGGAGGATTTGATTTT 57.046 40.909 0.00 0.00 39.86 1.82
3911 3986 4.953781 TTCTCTGGGGAGGATTTGATTT 57.046 40.909 0.00 0.00 39.86 2.17
3927 4002 7.093992 CAGGTTCTTTAGATTCGACTTTCTCT 58.906 38.462 0.00 0.00 0.00 3.10
3987 4062 4.275936 GCAGTTGTCTTATGGTTCACAGTT 59.724 41.667 0.00 0.00 0.00 3.16
4108 4183 6.096673 GGTAACAACCAAACAATTCTCCAT 57.903 37.500 0.00 0.00 0.00 3.41
4250 4325 3.680642 GCACATAGCATAACACAGTGG 57.319 47.619 5.31 0.00 44.79 4.00
4411 4561 0.878416 TAACATCAACGGCTTGTGGC 59.122 50.000 0.00 0.00 40.90 5.01
4412 4562 2.422597 TCTAACATCAACGGCTTGTGG 58.577 47.619 0.00 0.00 0.00 4.17
4413 4563 4.481930 TTTCTAACATCAACGGCTTGTG 57.518 40.909 0.00 0.00 0.00 3.33
4414 4564 4.759693 TCATTTCTAACATCAACGGCTTGT 59.240 37.500 0.00 0.00 0.00 3.16
4415 4565 5.295431 TCATTTCTAACATCAACGGCTTG 57.705 39.130 0.00 0.00 0.00 4.01
4416 4566 5.957842 TTCATTTCTAACATCAACGGCTT 57.042 34.783 0.00 0.00 0.00 4.35
4417 4567 5.240623 TGTTTCATTTCTAACATCAACGGCT 59.759 36.000 0.00 0.00 29.82 5.52
4418 4568 5.342259 GTGTTTCATTTCTAACATCAACGGC 59.658 40.000 0.00 0.00 36.72 5.68
4419 4569 6.668323 AGTGTTTCATTTCTAACATCAACGG 58.332 36.000 0.00 0.00 36.72 4.44
4420 4570 7.351981 TGAGTGTTTCATTTCTAACATCAACG 58.648 34.615 0.00 0.00 36.72 4.10
4421 4571 9.515020 TTTGAGTGTTTCATTTCTAACATCAAC 57.485 29.630 0.00 0.00 36.72 3.18
4423 4573 9.515020 GTTTTGAGTGTTTCATTTCTAACATCA 57.485 29.630 0.00 0.00 36.72 3.07
4424 4574 9.736023 AGTTTTGAGTGTTTCATTTCTAACATC 57.264 29.630 0.00 0.00 36.72 3.06
4425 4575 9.520204 CAGTTTTGAGTGTTTCATTTCTAACAT 57.480 29.630 0.00 0.00 36.72 2.71
4426 4576 7.973388 CCAGTTTTGAGTGTTTCATTTCTAACA 59.027 33.333 0.00 0.00 35.27 2.41
4427 4577 8.188139 TCCAGTTTTGAGTGTTTCATTTCTAAC 58.812 33.333 0.00 0.00 35.27 2.34
4428 4578 8.287439 TCCAGTTTTGAGTGTTTCATTTCTAA 57.713 30.769 0.00 0.00 35.27 2.10
4429 4579 7.556275 ACTCCAGTTTTGAGTGTTTCATTTCTA 59.444 33.333 0.00 0.00 41.40 2.10
4430 4580 6.378280 ACTCCAGTTTTGAGTGTTTCATTTCT 59.622 34.615 0.00 0.00 41.40 2.52
4431 4581 6.564328 ACTCCAGTTTTGAGTGTTTCATTTC 58.436 36.000 0.00 0.00 41.40 2.17
4432 4582 6.530019 ACTCCAGTTTTGAGTGTTTCATTT 57.470 33.333 0.00 0.00 41.40 2.32
4433 4583 7.639113 TTACTCCAGTTTTGAGTGTTTCATT 57.361 32.000 3.30 0.00 42.80 2.57
4434 4584 7.639113 TTTACTCCAGTTTTGAGTGTTTCAT 57.361 32.000 3.30 0.00 42.80 2.57
4435 4585 7.556275 AGATTTACTCCAGTTTTGAGTGTTTCA 59.444 33.333 3.30 0.00 42.80 2.69
4436 4586 7.931275 AGATTTACTCCAGTTTTGAGTGTTTC 58.069 34.615 3.30 0.00 42.80 2.78
4437 4587 7.881775 AGATTTACTCCAGTTTTGAGTGTTT 57.118 32.000 3.30 0.00 42.80 2.83
4438 4588 8.211629 ACTAGATTTACTCCAGTTTTGAGTGTT 58.788 33.333 0.00 0.00 42.80 3.32
4439 4589 7.736893 ACTAGATTTACTCCAGTTTTGAGTGT 58.263 34.615 0.00 0.00 42.80 3.55
4440 4590 7.872993 TGACTAGATTTACTCCAGTTTTGAGTG 59.127 37.037 0.00 0.00 42.80 3.51
4441 4591 7.873505 GTGACTAGATTTACTCCAGTTTTGAGT 59.126 37.037 0.00 0.00 44.85 3.41
4442 4592 8.091449 AGTGACTAGATTTACTCCAGTTTTGAG 58.909 37.037 0.00 0.00 35.92 3.02
4443 4593 7.963532 AGTGACTAGATTTACTCCAGTTTTGA 58.036 34.615 0.00 0.00 0.00 2.69
4444 4594 8.091449 AGAGTGACTAGATTTACTCCAGTTTTG 58.909 37.037 0.00 0.00 40.21 2.44
4445 4595 8.196378 AGAGTGACTAGATTTACTCCAGTTTT 57.804 34.615 0.00 0.00 40.21 2.43
4446 4596 7.784470 AGAGTGACTAGATTTACTCCAGTTT 57.216 36.000 0.00 0.00 40.21 2.66
4447 4597 7.784470 AAGAGTGACTAGATTTACTCCAGTT 57.216 36.000 0.00 0.00 40.21 3.16
4448 4598 7.233757 ACAAAGAGTGACTAGATTTACTCCAGT 59.766 37.037 0.00 1.66 40.21 4.00
4449 4599 7.607250 ACAAAGAGTGACTAGATTTACTCCAG 58.393 38.462 0.00 1.13 40.21 3.86
4450 4600 7.451877 AGACAAAGAGTGACTAGATTTACTCCA 59.548 37.037 0.00 0.00 40.21 3.86
4451 4601 7.832769 AGACAAAGAGTGACTAGATTTACTCC 58.167 38.462 0.00 0.00 40.21 3.85
4452 4602 9.699703 AAAGACAAAGAGTGACTAGATTTACTC 57.300 33.333 0.00 4.70 39.77 2.59
4453 4603 9.482627 CAAAGACAAAGAGTGACTAGATTTACT 57.517 33.333 0.00 0.00 31.60 2.24
4454 4604 9.262358 ACAAAGACAAAGAGTGACTAGATTTAC 57.738 33.333 0.00 0.00 31.60 2.01
4455 4605 9.832445 AACAAAGACAAAGAGTGACTAGATTTA 57.168 29.630 0.00 0.00 31.60 1.40
4456 4606 8.738645 AACAAAGACAAAGAGTGACTAGATTT 57.261 30.769 0.00 0.00 31.60 2.17
4457 4607 8.738645 AAACAAAGACAAAGAGTGACTAGATT 57.261 30.769 0.00 0.00 31.60 2.40
4458 4608 8.738645 AAAACAAAGACAAAGAGTGACTAGAT 57.261 30.769 0.00 0.00 31.60 1.98
4459 4609 9.832445 ATAAAACAAAGACAAAGAGTGACTAGA 57.168 29.630 0.00 0.00 31.60 2.43
4461 4611 8.761497 CGATAAAACAAAGACAAAGAGTGACTA 58.239 33.333 0.00 0.00 31.60 2.59
4462 4612 7.254795 CCGATAAAACAAAGACAAAGAGTGACT 60.255 37.037 0.00 0.00 33.36 3.41
4463 4613 6.851330 CCGATAAAACAAAGACAAAGAGTGAC 59.149 38.462 0.00 0.00 0.00 3.67
4464 4614 6.764085 TCCGATAAAACAAAGACAAAGAGTGA 59.236 34.615 0.00 0.00 0.00 3.41
4465 4615 6.851330 GTCCGATAAAACAAAGACAAAGAGTG 59.149 38.462 0.00 0.00 0.00 3.51
4466 4616 6.017357 GGTCCGATAAAACAAAGACAAAGAGT 60.017 38.462 0.00 0.00 0.00 3.24
4467 4617 6.371389 GGTCCGATAAAACAAAGACAAAGAG 58.629 40.000 0.00 0.00 0.00 2.85
4468 4618 5.049954 CGGTCCGATAAAACAAAGACAAAGA 60.050 40.000 4.91 0.00 0.00 2.52
4469 4619 5.144359 CGGTCCGATAAAACAAAGACAAAG 58.856 41.667 4.91 0.00 0.00 2.77
4470 4620 4.575645 ACGGTCCGATAAAACAAAGACAAA 59.424 37.500 20.51 0.00 0.00 2.83
4471 4621 4.128643 ACGGTCCGATAAAACAAAGACAA 58.871 39.130 20.51 0.00 0.00 3.18
4472 4622 3.731089 ACGGTCCGATAAAACAAAGACA 58.269 40.909 20.51 0.00 0.00 3.41
4473 4623 4.925646 ACTACGGTCCGATAAAACAAAGAC 59.074 41.667 20.51 0.00 0.00 3.01
4474 4624 4.925054 CACTACGGTCCGATAAAACAAAGA 59.075 41.667 20.51 0.00 0.00 2.52
4475 4625 4.092383 CCACTACGGTCCGATAAAACAAAG 59.908 45.833 20.51 3.48 0.00 2.77
4476 4626 3.995705 CCACTACGGTCCGATAAAACAAA 59.004 43.478 20.51 0.00 0.00 2.83
4477 4627 3.587923 CCACTACGGTCCGATAAAACAA 58.412 45.455 20.51 0.00 0.00 2.83
4478 4628 3.235157 CCACTACGGTCCGATAAAACA 57.765 47.619 20.51 0.00 0.00 2.83
4507 4657 3.448660 TCGAGAGAATGATTCAGAAGCCA 59.551 43.478 8.03 0.00 37.03 4.75
4538 4688 1.836604 GGGGAAAGGGCAACAGCAA 60.837 57.895 0.00 0.00 39.74 3.91
4565 4715 8.749026 TCTTCAGTTAGAATCTCTAATACCGT 57.251 34.615 0.00 0.00 40.64 4.83
4617 4767 2.965147 AGCCCAATGCCCAATAATACAC 59.035 45.455 0.00 0.00 42.71 2.90
4620 4770 7.898100 TGAATATAAGCCCAATGCCCAATAATA 59.102 33.333 0.00 0.00 42.71 0.98
4632 4782 6.788598 TTTGCAAGATGAATATAAGCCCAA 57.211 33.333 0.00 0.00 0.00 4.12
4677 4835 1.202952 TCGTTGGTACAGGCCCAAATT 60.203 47.619 0.00 0.00 43.30 1.82
4706 4865 2.032178 GGAATCGCAGCATTCTTGGTAC 59.968 50.000 13.79 0.00 33.81 3.34
4895 5055 7.514435 CGCACGTTAAACATTTTCTTTCACAAT 60.514 33.333 0.00 0.00 0.00 2.71
4986 5152 7.089770 TGCGCAATAATTTAACTTCCACATA 57.910 32.000 8.16 0.00 0.00 2.29
5466 5641 6.540189 CACAAGAGGGATCGAAACATCTATTT 59.460 38.462 7.21 0.00 0.00 1.40
5538 5714 7.162082 TCAAGGTAGAAACTTCAGAGGAATTC 58.838 38.462 0.00 0.00 31.34 2.17
5548 5724 4.459337 CCACCCATTCAAGGTAGAAACTTC 59.541 45.833 0.00 0.00 35.24 3.01
5769 5949 2.164624 ACCAGCTAGCTTGAGAAGTACG 59.835 50.000 21.82 3.73 0.00 3.67
6020 6200 4.278170 CAGGCACTTAAAACAGATGGAACA 59.722 41.667 0.00 0.00 40.15 3.18
6039 6219 5.915175 ACCTATAAAAGTAGCAGTACAGGC 58.085 41.667 0.00 0.00 0.00 4.85
6085 6265 2.649034 GCCACTCTCCGACGAACA 59.351 61.111 0.00 0.00 0.00 3.18
6546 6726 2.203394 CTTGGTGCTGGTGGTGCT 60.203 61.111 0.00 0.00 0.00 4.40
6547 6727 2.203337 TCTTGGTGCTGGTGGTGC 60.203 61.111 0.00 0.00 0.00 5.01
6859 7039 1.228429 CGGGGTGGGTGTGAATTGT 60.228 57.895 0.00 0.00 0.00 2.71
6861 7041 2.282887 GCGGGGTGGGTGTGAATT 60.283 61.111 0.00 0.00 0.00 2.17
7032 7221 2.745492 GCGAAGGCTGAAGCTGCT 60.745 61.111 0.00 0.00 41.70 4.24
7052 7241 3.826754 CTGCTGCTGCTGCCATGG 61.827 66.667 25.44 7.63 40.48 3.66
7138 7333 1.378514 CACACCACCATACTGGGGC 60.379 63.158 0.00 0.00 40.43 5.80
7282 7485 7.057894 TCTGTAAGCTAAAACAGGGAAAAGAA 58.942 34.615 18.50 0.80 42.72 2.52
7289 7492 4.935808 ACGAATCTGTAAGCTAAAACAGGG 59.064 41.667 18.50 11.02 42.72 4.45
7334 7537 2.829720 AGAGTTACATGCTCGGGTACAA 59.170 45.455 0.00 0.00 37.99 2.41
7397 7601 1.940613 GCAAAGGTTCAGAACGACAGT 59.059 47.619 7.22 0.00 0.00 3.55
7404 7608 2.057922 AGGGAGAGCAAAGGTTCAGAA 58.942 47.619 0.00 0.00 0.00 3.02
7413 7617 1.075482 CTTGCCCAGGGAGAGCAAA 59.925 57.895 10.89 0.00 45.20 3.68
7450 7654 0.318614 AATTTTTCACGGCGCCACAG 60.319 50.000 28.98 15.51 0.00 3.66
7452 7656 0.506506 CAAATTTTTCACGGCGCCAC 59.493 50.000 28.98 0.00 0.00 5.01
7453 7657 0.598680 CCAAATTTTTCACGGCGCCA 60.599 50.000 28.98 3.37 0.00 5.69
7455 7659 1.218230 TGCCAAATTTTTCACGGCGC 61.218 50.000 6.90 0.00 46.02 6.53
7459 7663 7.323177 CCAAACATTATTGCCAAATTTTTCACG 59.677 33.333 0.00 0.00 0.00 4.35
7460 7664 8.348507 TCCAAACATTATTGCCAAATTTTTCAC 58.651 29.630 0.00 0.00 0.00 3.18
7461 7665 8.348507 GTCCAAACATTATTGCCAAATTTTTCA 58.651 29.630 0.00 0.00 0.00 2.69
7488 7695 8.460428 TCAAACCGTTTACAACTTATTTTCTGT 58.540 29.630 0.00 0.00 0.00 3.41
7524 7731 4.853196 CCGAGTGCATCAAAATAACACTTG 59.147 41.667 0.00 0.00 41.45 3.16
7525 7732 4.759693 TCCGAGTGCATCAAAATAACACTT 59.240 37.500 0.00 0.00 41.45 3.16
7526 7733 4.323417 TCCGAGTGCATCAAAATAACACT 58.677 39.130 0.00 0.00 43.93 3.55
7530 7737 6.698008 ATTGATCCGAGTGCATCAAAATAA 57.302 33.333 2.53 0.00 41.28 1.40
7531 7738 7.800155 TTATTGATCCGAGTGCATCAAAATA 57.200 32.000 2.53 0.00 41.28 1.40
7590 7797 5.891198 TGCCTTAACCATCATGGCTATAAT 58.109 37.500 2.52 0.00 42.67 1.28
7592 7799 4.991789 TGCCTTAACCATCATGGCTATA 57.008 40.909 2.52 0.00 42.67 1.31
7615 7825 1.826921 GTGCATCTCCCATGGGCTG 60.827 63.158 27.41 22.02 34.68 4.85
7691 7905 2.573340 GGCAAAACATGAGGGGCG 59.427 61.111 0.00 0.00 0.00 6.13
7692 7906 1.815817 AACGGCAAAACATGAGGGGC 61.816 55.000 0.00 0.00 0.00 5.80
7693 7907 0.038343 CAACGGCAAAACATGAGGGG 60.038 55.000 0.00 0.00 0.00 4.79
7694 7908 0.673437 ACAACGGCAAAACATGAGGG 59.327 50.000 0.00 0.00 0.00 4.30
7695 7909 2.393764 GAACAACGGCAAAACATGAGG 58.606 47.619 0.00 0.00 0.00 3.86
7696 7910 2.034558 AGGAACAACGGCAAAACATGAG 59.965 45.455 0.00 0.00 0.00 2.90
7697 7911 2.028130 AGGAACAACGGCAAAACATGA 58.972 42.857 0.00 0.00 0.00 3.07
7698 7912 2.507339 AGGAACAACGGCAAAACATG 57.493 45.000 0.00 0.00 0.00 3.21
7699 7913 2.223947 GGAAGGAACAACGGCAAAACAT 60.224 45.455 0.00 0.00 0.00 2.71
7700 7914 1.135333 GGAAGGAACAACGGCAAAACA 59.865 47.619 0.00 0.00 0.00 2.83
7701 7915 1.847818 GGAAGGAACAACGGCAAAAC 58.152 50.000 0.00 0.00 0.00 2.43
7702 7916 0.382515 CGGAAGGAACAACGGCAAAA 59.617 50.000 0.00 0.00 0.00 2.44
7703 7917 2.026522 CGGAAGGAACAACGGCAAA 58.973 52.632 0.00 0.00 0.00 3.68
7704 7918 2.548295 GCGGAAGGAACAACGGCAA 61.548 57.895 0.00 0.00 34.00 4.52
8053 8338 8.112449 GTGCTGCAAAAATAAATAAATGCTCTC 58.888 33.333 2.77 0.00 34.97 3.20
8057 8342 6.840075 TGGTGCTGCAAAAATAAATAAATGC 58.160 32.000 2.77 0.00 0.00 3.56
8080 8377 3.364062 CTCGTAGTCCAAAGTAGCGATG 58.636 50.000 0.00 0.00 0.00 3.84
8102 8399 3.958147 ATGGAGCTTGACCACCGCG 62.958 63.158 0.00 0.00 40.36 6.46
8153 8452 7.605449 TCCAGAATCTGATGGAATTTTGAAAC 58.395 34.615 12.53 0.00 42.61 2.78
8164 8463 5.105997 GGAACTGTTTTCCAGAATCTGATGG 60.106 44.000 12.53 0.00 44.49 3.51
8298 8599 8.994429 TTTTGAAAACAGTGAACATTATGTGT 57.006 26.923 0.00 0.00 44.84 3.72
8303 8604 9.814899 ATGTGATTTTGAAAACAGTGAACATTA 57.185 25.926 0.00 0.00 0.00 1.90
8333 8634 6.361214 CGCACGAGGTACACAAAAATAAAAAT 59.639 34.615 0.00 0.00 0.00 1.82
8338 8639 3.391965 ACGCACGAGGTACACAAAAATA 58.608 40.909 0.00 0.00 0.00 1.40
8385 8686 3.511699 ACAGATGTATACTGCACGTGTG 58.488 45.455 18.38 12.87 38.74 3.82
8464 8765 1.556911 AGAAATGTCGAGCTCCATGGT 59.443 47.619 12.58 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.