Multiple sequence alignment - TraesCS6A01G052800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G052800 chr6A 100.000 3219 0 0 1 3219 27295850 27292632 0.000000e+00 5945.0
1 TraesCS6A01G052800 chr6B 85.526 2280 214 61 85 2298 48073358 48075587 0.000000e+00 2276.0
2 TraesCS6A01G052800 chr6B 87.000 1200 96 28 1135 2304 47990128 47988959 0.000000e+00 1297.0
3 TraesCS6A01G052800 chr6B 90.051 392 19 9 768 1143 47990985 47990598 1.040000e-134 490.0
4 TraesCS6A01G052800 chr6B 94.792 96 5 0 2326 2421 48075666 48075761 2.000000e-32 150.0
5 TraesCS6A01G052800 chr6B 79.221 154 30 2 1394 1546 42318391 42318239 4.390000e-19 106.0
6 TraesCS6A01G052800 chrUn 84.460 2426 229 82 55 2421 97113187 97110851 0.000000e+00 2255.0
7 TraesCS6A01G052800 chrUn 94.595 111 6 0 2437 2547 97110866 97110756 4.270000e-39 172.0
8 TraesCS6A01G052800 chr1B 83.392 572 54 27 2680 3219 482485288 482485850 2.890000e-135 492.0
9 TraesCS6A01G052800 chr1B 81.481 594 59 28 2669 3219 648998780 648999365 1.060000e-119 440.0
10 TraesCS6A01G052800 chr1B 82.178 404 45 6 2836 3219 595007037 595007433 4.010000e-84 322.0
11 TraesCS6A01G052800 chr1B 81.132 106 16 4 1426 1529 100308920 100309023 7.400000e-12 82.4
12 TraesCS6A01G052800 chr5D 82.180 578 70 17 2669 3219 58165952 58165381 1.750000e-127 466.0
13 TraesCS6A01G052800 chr5D 85.093 483 39 14 2755 3219 334991255 334991722 2.260000e-126 462.0
14 TraesCS6A01G052800 chr5D 97.500 80 2 0 2572 2651 2113528 2113607 1.560000e-28 137.0
15 TraesCS6A01G052800 chr5D 97.403 77 2 0 2572 2648 424592020 424592096 7.250000e-27 132.0
16 TraesCS6A01G052800 chr3A 81.982 555 83 17 2669 3219 1025250 1024709 3.790000e-124 455.0
17 TraesCS6A01G052800 chr3A 86.264 182 17 6 2669 2850 689471854 689471681 1.180000e-44 191.0
18 TraesCS6A01G052800 chr7D 81.488 578 73 19 2669 3219 396574672 396575242 8.190000e-121 444.0
19 TraesCS6A01G052800 chr7D 80.467 599 67 32 2668 3219 89936497 89935902 2.310000e-111 412.0
20 TraesCS6A01G052800 chr7D 97.403 77 2 0 2575 2651 147557945 147557869 7.250000e-27 132.0
21 TraesCS6A01G052800 chr7D 96.250 80 3 0 2572 2651 503083017 503083096 7.250000e-27 132.0
22 TraesCS6A01G052800 chr7D 97.403 77 2 0 2575 2651 536163177 536163101 7.250000e-27 132.0
23 TraesCS6A01G052800 chr7D 100.000 29 0 0 1193 1221 446919912 446919884 2.000000e-03 54.7
24 TraesCS6A01G052800 chr3D 81.371 569 77 26 2669 3219 12307960 12307403 1.370000e-118 436.0
25 TraesCS6A01G052800 chr3D 81.900 558 60 18 2699 3219 56544135 56543582 1.770000e-117 433.0
26 TraesCS6A01G052800 chr3D 79.004 562 82 28 2669 3219 358180769 358181305 5.110000e-93 351.0
27 TraesCS6A01G052800 chr3D 77.167 600 65 44 2669 3219 337983261 337982685 1.890000e-72 283.0
28 TraesCS6A01G052800 chr3D 86.592 179 19 4 2669 2846 598347716 598347890 3.280000e-45 193.0
29 TraesCS6A01G052800 chr3D 96.250 80 3 0 2572 2651 110810046 110810125 7.250000e-27 132.0
30 TraesCS6A01G052800 chr3D 85.333 75 11 0 1475 1549 170564411 170564337 9.570000e-11 78.7
31 TraesCS6A01G052800 chr3D 97.059 34 1 0 1191 1224 600134991 600134958 1.250000e-04 58.4
32 TraesCS6A01G052800 chr2D 81.980 505 47 28 2719 3219 387551642 387551178 3.890000e-104 388.0
33 TraesCS6A01G052800 chr2D 78.218 303 37 24 2669 2957 53948637 53948350 1.990000e-37 167.0
34 TraesCS6A01G052800 chr2D 100.000 29 0 0 1810 1838 560992431 560992459 2.000000e-03 54.7
35 TraesCS6A01G052800 chr2A 79.626 589 75 29 2669 3219 596115030 596115611 6.520000e-102 381.0
36 TraesCS6A01G052800 chr2A 100.000 29 0 0 1810 1838 700976387 700976415 2.000000e-03 54.7
37 TraesCS6A01G052800 chr2B 87.374 198 17 7 2679 2870 624365812 624365617 1.500000e-53 220.0
38 TraesCS6A01G052800 chr2B 81.731 104 19 0 1426 1529 146992926 146993029 1.590000e-13 87.9
39 TraesCS6A01G052800 chr2B 100.000 29 0 0 1810 1838 669649402 669649430 2.000000e-03 54.7
40 TraesCS6A01G052800 chr7B 100.000 74 0 0 2578 2651 584265933 584266006 1.560000e-28 137.0
41 TraesCS6A01G052800 chr4D 97.500 80 2 0 2572 2651 351853214 351853293 1.560000e-28 137.0
42 TraesCS6A01G052800 chr4D 98.701 77 1 0 2572 2648 464513216 464513292 1.560000e-28 137.0
43 TraesCS6A01G052800 chr4B 96.364 55 2 0 1162 1216 483946867 483946921 1.230000e-14 91.6
44 TraesCS6A01G052800 chr1A 81.905 105 17 2 1426 1529 60955838 60955735 1.590000e-13 87.9
45 TraesCS6A01G052800 chr1D 80.189 106 17 4 1426 1529 62858301 62858404 3.440000e-10 76.8
46 TraesCS6A01G052800 chr7A 100.000 29 0 0 1193 1221 497776289 497776317 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G052800 chr6A 27292632 27295850 3218 True 5945.0 5945 100.0000 1 3219 1 chr6A.!!$R1 3218
1 TraesCS6A01G052800 chr6B 48073358 48075761 2403 False 1213.0 2276 90.1590 85 2421 2 chr6B.!!$F1 2336
2 TraesCS6A01G052800 chr6B 47988959 47990985 2026 True 893.5 1297 88.5255 768 2304 2 chr6B.!!$R2 1536
3 TraesCS6A01G052800 chrUn 97110756 97113187 2431 True 1213.5 2255 89.5275 55 2547 2 chrUn.!!$R1 2492
4 TraesCS6A01G052800 chr1B 482485288 482485850 562 False 492.0 492 83.3920 2680 3219 1 chr1B.!!$F2 539
5 TraesCS6A01G052800 chr1B 648998780 648999365 585 False 440.0 440 81.4810 2669 3219 1 chr1B.!!$F4 550
6 TraesCS6A01G052800 chr5D 58165381 58165952 571 True 466.0 466 82.1800 2669 3219 1 chr5D.!!$R1 550
7 TraesCS6A01G052800 chr3A 1024709 1025250 541 True 455.0 455 81.9820 2669 3219 1 chr3A.!!$R1 550
8 TraesCS6A01G052800 chr7D 396574672 396575242 570 False 444.0 444 81.4880 2669 3219 1 chr7D.!!$F1 550
9 TraesCS6A01G052800 chr7D 89935902 89936497 595 True 412.0 412 80.4670 2668 3219 1 chr7D.!!$R1 551
10 TraesCS6A01G052800 chr3D 12307403 12307960 557 True 436.0 436 81.3710 2669 3219 1 chr3D.!!$R1 550
11 TraesCS6A01G052800 chr3D 56543582 56544135 553 True 433.0 433 81.9000 2699 3219 1 chr3D.!!$R2 520
12 TraesCS6A01G052800 chr3D 358180769 358181305 536 False 351.0 351 79.0040 2669 3219 1 chr3D.!!$F2 550
13 TraesCS6A01G052800 chr3D 337982685 337983261 576 True 283.0 283 77.1670 2669 3219 1 chr3D.!!$R4 550
14 TraesCS6A01G052800 chr2A 596115030 596115611 581 False 381.0 381 79.6260 2669 3219 1 chr2A.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 709 0.248743 CGGTAAGCTTGCATGCATGG 60.249 55.0 28.66 21.56 34.99 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2561 3215 0.036483 ACATGTCAGTGCGGCATACA 60.036 50.0 5.72 11.79 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.171635 GCTCACAAGCCTAAACGGG 58.828 57.895 0.00 0.00 43.10 5.28
29 30 3.199880 CCTAAACGGGCATTGAGATCT 57.800 47.619 0.00 0.00 0.00 2.75
30 31 3.545703 CCTAAACGGGCATTGAGATCTT 58.454 45.455 0.00 0.00 0.00 2.40
31 32 4.703897 CCTAAACGGGCATTGAGATCTTA 58.296 43.478 0.00 0.00 0.00 2.10
32 33 5.123227 CCTAAACGGGCATTGAGATCTTAA 58.877 41.667 1.97 1.97 0.00 1.85
33 34 4.965119 AAACGGGCATTGAGATCTTAAC 57.035 40.909 1.44 0.00 0.00 2.01
34 35 2.550978 ACGGGCATTGAGATCTTAACG 58.449 47.619 1.44 4.46 0.00 3.18
35 36 2.167693 ACGGGCATTGAGATCTTAACGA 59.832 45.455 12.80 0.00 0.00 3.85
36 37 2.797156 CGGGCATTGAGATCTTAACGAG 59.203 50.000 1.44 0.00 0.00 4.18
37 38 2.545946 GGGCATTGAGATCTTAACGAGC 59.454 50.000 1.44 7.24 0.00 5.03
38 39 2.219674 GGCATTGAGATCTTAACGAGCG 59.780 50.000 1.44 0.00 32.02 5.03
39 40 2.860735 GCATTGAGATCTTAACGAGCGT 59.139 45.455 1.44 0.00 32.02 5.07
40 41 3.307242 GCATTGAGATCTTAACGAGCGTT 59.693 43.478 13.11 13.11 41.65 4.84
41 42 4.780324 GCATTGAGATCTTAACGAGCGTTG 60.780 45.833 17.54 2.93 38.92 4.10
42 43 2.876091 TGAGATCTTAACGAGCGTTGG 58.124 47.619 17.54 10.45 38.92 3.77
43 44 2.194271 GAGATCTTAACGAGCGTTGGG 58.806 52.381 17.54 10.14 38.92 4.12
44 45 1.822990 AGATCTTAACGAGCGTTGGGA 59.177 47.619 17.54 14.43 38.92 4.37
45 46 2.232941 AGATCTTAACGAGCGTTGGGAA 59.767 45.455 17.54 4.21 38.92 3.97
46 47 1.787012 TCTTAACGAGCGTTGGGAAC 58.213 50.000 17.54 0.00 38.92 3.62
47 48 1.068895 TCTTAACGAGCGTTGGGAACA 59.931 47.619 17.54 0.00 38.92 3.18
48 49 7.751450 AGATCTTAACGAGCGTTGGGAACAA 62.751 44.000 17.54 2.87 39.79 2.83
70 71 1.531149 CCGAACAAGCAAATCGACTGT 59.469 47.619 0.00 0.00 38.82 3.55
74 75 1.202758 ACAAGCAAATCGACTGTCCCA 60.203 47.619 1.55 0.00 0.00 4.37
76 77 2.270352 AGCAAATCGACTGTCCCAAA 57.730 45.000 1.55 0.00 0.00 3.28
82 83 4.569719 AATCGACTGTCCCAAATAAGGT 57.430 40.909 1.55 0.00 0.00 3.50
88 89 4.332828 ACTGTCCCAAATAAGGTGTAAGC 58.667 43.478 0.00 0.00 0.00 3.09
97 99 4.706842 ATAAGGTGTAAGCCGATTCCAT 57.293 40.909 0.00 0.00 32.25 3.41
101 103 2.639065 GTGTAAGCCGATTCCATCCAA 58.361 47.619 0.00 0.00 0.00 3.53
121 123 1.341976 ACCCAACAGACCAAAAGCACT 60.342 47.619 0.00 0.00 0.00 4.40
125 127 1.897560 ACAGACCAAAAGCACTAGCC 58.102 50.000 0.00 0.00 43.56 3.93
133 136 4.051237 CCAAAAGCACTAGCCAGAAAAAC 58.949 43.478 0.00 0.00 43.56 2.43
137 140 4.307443 AGCACTAGCCAGAAAAACAAAC 57.693 40.909 0.00 0.00 43.56 2.93
146 149 3.430218 CCAGAAAAACAAACAAACGCACA 59.570 39.130 0.00 0.00 0.00 4.57
147 150 4.434067 CCAGAAAAACAAACAAACGCACAG 60.434 41.667 0.00 0.00 0.00 3.66
153 156 2.942376 ACAAACAAACGCACAGATCTCA 59.058 40.909 0.00 0.00 0.00 3.27
175 178 3.004734 AGAACAGATCAAACGGCCAAAAG 59.995 43.478 2.24 0.00 0.00 2.27
179 182 3.191162 CAGATCAAACGGCCAAAAGATCA 59.809 43.478 20.64 0.00 35.52 2.92
180 183 3.441572 AGATCAAACGGCCAAAAGATCAG 59.558 43.478 20.64 0.00 35.52 2.90
187 190 3.277962 CCAAAAGATCAGCTGGCCT 57.722 52.632 15.13 8.42 0.00 5.19
205 208 3.369787 GGCCTAAATTCAAAATGCAGGCT 60.370 43.478 17.51 0.00 45.12 4.58
228 236 6.584185 TGACTCACATGTAGCTAAAGTGTA 57.416 37.500 16.44 7.11 0.00 2.90
248 256 8.732746 AGTGTAATATATTCACTGTTTCCCAC 57.267 34.615 20.41 5.26 40.29 4.61
254 262 9.705290 AATATATTCACTGTTTCCCACAAAAAC 57.295 29.630 0.00 0.00 33.87 2.43
302 310 4.826605 CACGCACGCATACGCACG 62.827 66.667 0.00 0.00 45.53 5.34
304 312 4.537533 CGCACGCATACGCACGAC 62.538 66.667 0.00 0.00 45.53 4.34
318 330 3.780693 CGACGTACGTACTCCGGA 58.219 61.111 22.87 2.93 42.24 5.14
338 350 1.266786 CGTGTGAAGGTGACGTCGTC 61.267 60.000 18.51 18.51 42.22 4.20
339 351 0.938168 GTGTGAAGGTGACGTCGTCC 60.938 60.000 22.05 18.05 42.22 4.79
351 363 1.272781 CGTCGTCCTCAGCAAAGATC 58.727 55.000 0.00 0.00 0.00 2.75
352 364 1.135257 CGTCGTCCTCAGCAAAGATCT 60.135 52.381 0.00 0.00 0.00 2.75
353 365 2.672478 CGTCGTCCTCAGCAAAGATCTT 60.672 50.000 0.88 0.88 0.00 2.40
354 366 2.670414 GTCGTCCTCAGCAAAGATCTTG 59.330 50.000 9.17 4.72 0.00 3.02
356 368 2.363683 GTCCTCAGCAAAGATCTTGGG 58.636 52.381 9.17 5.88 0.00 4.12
357 369 1.988107 TCCTCAGCAAAGATCTTGGGT 59.012 47.619 9.17 8.98 0.00 4.51
358 370 2.376518 TCCTCAGCAAAGATCTTGGGTT 59.623 45.455 11.96 1.58 0.00 4.11
359 371 2.490903 CCTCAGCAAAGATCTTGGGTTG 59.509 50.000 11.96 13.38 0.00 3.77
360 372 1.888512 TCAGCAAAGATCTTGGGTTGC 59.111 47.619 18.17 18.17 45.29 4.17
361 373 1.614903 CAGCAAAGATCTTGGGTTGCA 59.385 47.619 24.57 0.00 46.92 4.08
362 374 1.615392 AGCAAAGATCTTGGGTTGCAC 59.385 47.619 24.57 4.22 46.92 4.57
363 375 1.666888 GCAAAGATCTTGGGTTGCACG 60.667 52.381 20.08 0.00 44.53 5.34
364 376 0.598065 AAAGATCTTGGGTTGCACGC 59.402 50.000 9.17 0.00 0.00 5.34
365 377 1.577328 AAGATCTTGGGTTGCACGCG 61.577 55.000 7.30 3.53 33.25 6.01
366 378 3.667429 GATCTTGGGTTGCACGCGC 62.667 63.158 5.73 0.00 33.25 6.86
404 416 2.997986 ACGTCCATGGTTACTTTTAGCG 59.002 45.455 12.58 4.90 0.00 4.26
414 426 2.457366 ACTTTTAGCGGTGGAGTGAG 57.543 50.000 0.00 0.00 0.00 3.51
425 437 2.611518 GTGGAGTGAGGATGAAGAACG 58.388 52.381 0.00 0.00 0.00 3.95
432 444 0.539051 AGGATGAAGAACGAGGGCAG 59.461 55.000 0.00 0.00 0.00 4.85
483 497 5.597813 GCAAGTGGCAGTATATGTACATC 57.402 43.478 12.68 0.00 43.97 3.06
524 538 3.437741 TCGACAGACGATTTAGCTGTACA 59.562 43.478 0.00 0.00 46.45 2.90
557 571 2.185350 GCCAGCTCTGCTCGCTAA 59.815 61.111 2.12 0.00 39.55 3.09
559 573 1.220817 GCCAGCTCTGCTCGCTAATC 61.221 60.000 2.12 0.00 39.55 1.75
560 574 0.388659 CCAGCTCTGCTCGCTAATCT 59.611 55.000 0.00 0.00 36.40 2.40
562 576 1.337703 CAGCTCTGCTCGCTAATCTCT 59.662 52.381 0.00 0.00 36.40 3.10
563 577 1.608590 AGCTCTGCTCGCTAATCTCTC 59.391 52.381 0.00 0.00 30.62 3.20
564 578 1.336440 GCTCTGCTCGCTAATCTCTCA 59.664 52.381 0.00 0.00 0.00 3.27
565 579 2.030007 GCTCTGCTCGCTAATCTCTCAT 60.030 50.000 0.00 0.00 0.00 2.90
566 580 3.552684 GCTCTGCTCGCTAATCTCTCATT 60.553 47.826 0.00 0.00 0.00 2.57
567 581 4.320861 GCTCTGCTCGCTAATCTCTCATTA 60.321 45.833 0.00 0.00 0.00 1.90
568 582 5.622007 GCTCTGCTCGCTAATCTCTCATTAT 60.622 44.000 0.00 0.00 0.00 1.28
569 583 6.404184 GCTCTGCTCGCTAATCTCTCATTATA 60.404 42.308 0.00 0.00 0.00 0.98
570 584 6.847400 TCTGCTCGCTAATCTCTCATTATAC 58.153 40.000 0.00 0.00 0.00 1.47
571 585 5.631992 TGCTCGCTAATCTCTCATTATACG 58.368 41.667 0.00 0.00 0.00 3.06
572 586 5.181433 TGCTCGCTAATCTCTCATTATACGT 59.819 40.000 0.00 0.00 0.00 3.57
573 587 6.370718 TGCTCGCTAATCTCTCATTATACGTA 59.629 38.462 0.00 0.00 0.00 3.57
578 592 7.533222 CGCTAATCTCTCATTATACGTAACGTT 59.467 37.037 5.88 5.88 41.54 3.99
584 598 8.453320 TCTCTCATTATACGTAACGTTCAGAAA 58.547 33.333 2.82 0.00 41.54 2.52
596 627 2.659757 CGTTCAGAAACAATGCATGCAG 59.340 45.455 26.69 15.79 34.93 4.41
602 633 3.833645 CAATGCATGCAGGCGGCT 61.834 61.111 26.69 5.25 45.15 5.52
628 660 2.062922 TGGCCAACGTCCACAGTAT 58.937 52.632 0.61 0.00 0.00 2.12
635 667 2.010145 ACGTCCACAGTATCACATGC 57.990 50.000 0.00 0.00 0.00 4.06
636 668 1.275010 ACGTCCACAGTATCACATGCA 59.725 47.619 0.00 0.00 0.00 3.96
639 671 3.273434 GTCCACAGTATCACATGCACAT 58.727 45.455 0.00 0.00 0.00 3.21
672 709 0.248743 CGGTAAGCTTGCATGCATGG 60.249 55.000 28.66 21.56 34.99 3.66
675 712 2.007113 TAAGCTTGCATGCATGGCGG 62.007 55.000 28.66 15.90 34.99 6.13
677 714 4.884257 CTTGCATGCATGGCGGCC 62.884 66.667 27.34 13.32 31.99 6.13
716 753 3.242739 ACACGCTTTGACTTTGCAAGTAG 60.243 43.478 0.00 0.00 43.03 2.57
728 765 9.767228 TGACTTTGCAAGTAGTGTTACTAATTA 57.233 29.630 8.50 0.00 43.03 1.40
759 796 0.726827 GCAACGCAGCATGTAAGCTA 59.273 50.000 0.00 0.00 44.54 3.32
760 797 1.267732 GCAACGCAGCATGTAAGCTAG 60.268 52.381 0.00 0.00 44.54 3.42
761 798 1.328680 CAACGCAGCATGTAAGCTAGG 59.671 52.381 0.00 0.00 44.54 3.02
762 799 0.824109 ACGCAGCATGTAAGCTAGGA 59.176 50.000 0.00 0.00 44.54 2.94
763 800 1.202463 ACGCAGCATGTAAGCTAGGAG 60.202 52.381 0.00 0.00 44.54 3.69
788 825 3.542676 TTGCACCGGACGACCAGT 61.543 61.111 9.46 0.00 35.59 4.00
812 851 0.882484 TCGATGGCGAAGTTTGCACA 60.882 50.000 16.93 12.11 44.78 4.57
879 922 1.001378 GCCGTAATATGCAAAGCCAGG 60.001 52.381 0.00 0.00 0.00 4.45
889 934 1.545582 GCAAAGCCAGGTATCTTGCAA 59.454 47.619 1.40 0.00 34.45 4.08
893 938 1.065126 AGCCAGGTATCTTGCAAGGAC 60.065 52.381 25.73 21.70 34.45 3.85
993 1050 1.552337 AGCAAGCAAGCTAGCTAGACA 59.448 47.619 25.15 0.00 45.89 3.41
997 1054 4.748892 CAAGCAAGCTAGCTAGACACTTA 58.251 43.478 25.15 0.00 45.89 2.24
999 1056 3.109619 GCAAGCTAGCTAGACACTTACG 58.890 50.000 25.15 8.37 0.00 3.18
1013 1070 3.709880 TTACGATGGCGGCGTCCTG 62.710 63.158 23.86 14.07 42.62 3.86
1068 1125 1.117142 TGGTCCTTTTCGTCTCCGGT 61.117 55.000 0.00 0.00 33.95 5.28
1229 1777 2.159421 GCTTCGTCGAGGTGTGAGAATA 60.159 50.000 6.22 0.00 0.00 1.75
1244 1794 5.413523 TGTGAGAATATCCATATGCATGCAC 59.586 40.000 25.37 5.98 0.00 4.57
1248 1798 6.008331 AGAATATCCATATGCATGCACTTGT 58.992 36.000 25.37 9.96 0.00 3.16
1271 1821 3.412386 TGGCTCAGATCGATCGATTCTA 58.588 45.455 29.89 17.06 34.60 2.10
1282 1839 2.507339 TCGATTCTATCATGCACGCA 57.493 45.000 0.00 0.00 0.00 5.24
1365 1934 2.738521 CTCCTGGACAACGTGCCG 60.739 66.667 0.00 0.00 0.00 5.69
1372 1941 2.048503 ACAACGTGCCGGCTACTC 60.049 61.111 29.70 14.07 0.00 2.59
1440 2009 3.753070 CTCCCTACGCGGCTTCGAC 62.753 68.421 12.47 0.00 35.61 4.20
1551 2123 1.330306 CCGTTCTGGTACGTTACGTG 58.670 55.000 21.22 3.50 41.39 4.49
1560 2132 1.800283 TACGTTACGTGGTGCCGGAA 61.800 55.000 21.22 0.00 41.39 4.30
1585 2157 6.072175 AGCGGAAACAGTGCAGATAAATAAAA 60.072 34.615 0.00 0.00 0.00 1.52
1586 2158 6.584563 GCGGAAACAGTGCAGATAAATAAAAA 59.415 34.615 0.00 0.00 0.00 1.94
1610 2190 3.126858 TGCCTTGCGAGTACATTCATTTC 59.873 43.478 0.00 0.00 0.00 2.17
1621 2201 2.265073 ATTCATTTCAACCGGCGGCG 62.265 55.000 28.71 26.12 0.00 6.46
1743 2337 3.723348 GCCGTTCGCCAACCTCAC 61.723 66.667 0.00 0.00 0.00 3.51
1745 2339 2.280524 CGTTCGCCAACCTCACCA 60.281 61.111 0.00 0.00 0.00 4.17
1746 2340 2.317609 CGTTCGCCAACCTCACCAG 61.318 63.158 0.00 0.00 0.00 4.00
1756 2350 1.908793 CCTCACCAGTCCTGACGGT 60.909 63.158 7.64 7.64 38.22 4.83
1761 2355 2.490217 CAGTCCTGACGGTAGCGG 59.510 66.667 19.72 0.23 36.20 5.52
1762 2356 2.754658 AGTCCTGACGGTAGCGGG 60.755 66.667 19.72 10.42 36.20 6.13
1770 2364 3.592814 CGGTAGCGGGCTCATCGA 61.593 66.667 6.39 0.00 0.00 3.59
1881 2475 0.802607 CTCCGCCTCTACAACGAAGC 60.803 60.000 0.00 0.00 0.00 3.86
1904 2498 1.852077 GCATCGATTTTCAGTTCGCCG 60.852 52.381 0.00 0.00 35.39 6.46
2017 2611 3.701604 CTACGCGGACCTCACCAGC 62.702 68.421 12.47 0.00 0.00 4.85
2047 2641 1.913762 CCTCCACTCCGACCAGGTT 60.914 63.158 0.00 0.00 41.99 3.50
2050 2644 0.898789 TCCACTCCGACCAGGTTCTC 60.899 60.000 0.00 0.00 41.99 2.87
2076 2670 0.532862 CAGAACAACCAGACGCAGGT 60.533 55.000 0.00 0.00 42.34 4.00
2170 2764 4.379243 AACCTCAGCCCGCTCACG 62.379 66.667 0.00 0.00 39.67 4.35
2203 2797 2.834549 CCAGATCAGGACCAACTGTAGT 59.165 50.000 0.00 0.00 39.48 2.73
2204 2798 4.023980 CCAGATCAGGACCAACTGTAGTA 58.976 47.826 0.00 0.00 39.48 1.82
2206 2800 5.221342 CCAGATCAGGACCAACTGTAGTATC 60.221 48.000 0.00 0.00 39.48 2.24
2214 2808 3.176708 CCAACTGTAGTATCGTCAACCG 58.823 50.000 0.00 0.00 38.13 4.44
2229 2826 2.025727 CCGCTGATCGTACGGTCC 59.974 66.667 24.91 10.16 42.01 4.46
2245 2842 3.018856 CGGTCCGGCATATATACCACTA 58.981 50.000 2.34 0.00 0.00 2.74
2265 2862 9.971922 ACCACTATTAATTACTACCACGATAAC 57.028 33.333 0.00 0.00 0.00 1.89
2309 2925 8.152159 GCGACGTTTGTAATAACTATACTATGC 58.848 37.037 0.00 0.00 0.00 3.14
2322 2976 7.397892 ACTATACTATGCTGTGCTACATAGG 57.602 40.000 13.03 0.54 46.56 2.57
2323 2977 7.175797 ACTATACTATGCTGTGCTACATAGGA 58.824 38.462 13.03 6.25 46.56 2.94
2324 2978 4.862902 ACTATGCTGTGCTACATAGGAG 57.137 45.455 13.03 4.85 46.56 3.69
2325 2979 4.219115 ACTATGCTGTGCTACATAGGAGT 58.781 43.478 13.03 5.28 46.56 3.85
2326 2980 5.386060 ACTATGCTGTGCTACATAGGAGTA 58.614 41.667 13.03 0.00 46.56 2.59
2340 2994 3.752359 AGGAGTACTGGCTTACTGGTA 57.248 47.619 0.00 0.00 32.17 3.25
2450 3104 9.790389 TTTTTGCGACGGAAACAATATTATTAT 57.210 25.926 14.40 0.00 0.00 1.28
2451 3105 8.996988 TTTGCGACGGAAACAATATTATTATC 57.003 30.769 10.69 0.00 0.00 1.75
2452 3106 7.716768 TGCGACGGAAACAATATTATTATCA 57.283 32.000 0.00 0.00 0.00 2.15
2453 3107 8.144155 TGCGACGGAAACAATATTATTATCAA 57.856 30.769 0.00 0.00 0.00 2.57
2454 3108 8.065407 TGCGACGGAAACAATATTATTATCAAC 58.935 33.333 0.00 0.00 0.00 3.18
2455 3109 8.065407 GCGACGGAAACAATATTATTATCAACA 58.935 33.333 0.00 0.00 0.00 3.33
2456 3110 9.923786 CGACGGAAACAATATTATTATCAACAA 57.076 29.630 0.00 0.00 0.00 2.83
2522 3176 6.258160 CAGTATCTTTTCTTAATTGTGCCCG 58.742 40.000 0.00 0.00 0.00 6.13
2547 3201 4.873827 TGAATCCCGAGGTTAATTTCTTCG 59.126 41.667 7.50 7.50 34.92 3.79
2548 3202 4.748277 ATCCCGAGGTTAATTTCTTCGA 57.252 40.909 13.37 0.00 36.72 3.71
2549 3203 4.748277 TCCCGAGGTTAATTTCTTCGAT 57.252 40.909 13.37 0.00 36.72 3.59
2550 3204 4.439057 TCCCGAGGTTAATTTCTTCGATG 58.561 43.478 13.37 0.00 36.72 3.84
2551 3205 3.560068 CCCGAGGTTAATTTCTTCGATGG 59.440 47.826 13.37 6.26 36.72 3.51
2552 3206 4.189231 CCGAGGTTAATTTCTTCGATGGT 58.811 43.478 13.37 0.00 36.72 3.55
2553 3207 4.270325 CCGAGGTTAATTTCTTCGATGGTC 59.730 45.833 13.37 0.00 36.72 4.02
2554 3208 5.109903 CGAGGTTAATTTCTTCGATGGTCT 58.890 41.667 8.39 0.00 36.72 3.85
2555 3209 5.005779 CGAGGTTAATTTCTTCGATGGTCTG 59.994 44.000 8.39 0.00 36.72 3.51
2556 3210 5.186198 AGGTTAATTTCTTCGATGGTCTGG 58.814 41.667 0.00 0.00 0.00 3.86
2557 3211 4.335594 GGTTAATTTCTTCGATGGTCTGGG 59.664 45.833 0.00 0.00 0.00 4.45
2558 3212 3.721087 AATTTCTTCGATGGTCTGGGT 57.279 42.857 0.00 0.00 0.00 4.51
2559 3213 3.721087 ATTTCTTCGATGGTCTGGGTT 57.279 42.857 0.00 0.00 0.00 4.11
2560 3214 2.762535 TTCTTCGATGGTCTGGGTTC 57.237 50.000 0.00 0.00 0.00 3.62
2561 3215 1.938585 TCTTCGATGGTCTGGGTTCT 58.061 50.000 0.00 0.00 0.00 3.01
2562 3216 1.550524 TCTTCGATGGTCTGGGTTCTG 59.449 52.381 0.00 0.00 0.00 3.02
2563 3217 1.276421 CTTCGATGGTCTGGGTTCTGT 59.724 52.381 0.00 0.00 0.00 3.41
2564 3218 2.225382 TCGATGGTCTGGGTTCTGTA 57.775 50.000 0.00 0.00 0.00 2.74
2565 3219 2.747177 TCGATGGTCTGGGTTCTGTAT 58.253 47.619 0.00 0.00 0.00 2.29
2566 3220 2.430694 TCGATGGTCTGGGTTCTGTATG 59.569 50.000 0.00 0.00 0.00 2.39
2567 3221 2.565841 GATGGTCTGGGTTCTGTATGC 58.434 52.381 0.00 0.00 0.00 3.14
2568 3222 0.618458 TGGTCTGGGTTCTGTATGCC 59.382 55.000 0.00 0.00 0.00 4.40
2569 3223 0.462047 GGTCTGGGTTCTGTATGCCG 60.462 60.000 0.00 0.00 0.00 5.69
2570 3224 1.090052 GTCTGGGTTCTGTATGCCGC 61.090 60.000 0.00 0.00 0.00 6.53
2571 3225 1.078497 CTGGGTTCTGTATGCCGCA 60.078 57.895 0.00 0.00 0.00 5.69
2572 3226 1.369091 CTGGGTTCTGTATGCCGCAC 61.369 60.000 0.00 0.00 0.00 5.34
2573 3227 1.078426 GGGTTCTGTATGCCGCACT 60.078 57.895 0.00 0.00 0.00 4.40
2574 3228 1.369091 GGGTTCTGTATGCCGCACTG 61.369 60.000 0.00 0.00 0.00 3.66
2575 3229 0.391130 GGTTCTGTATGCCGCACTGA 60.391 55.000 0.00 0.00 0.00 3.41
2576 3230 0.721718 GTTCTGTATGCCGCACTGAC 59.278 55.000 0.00 0.00 0.00 3.51
2577 3231 0.320050 TTCTGTATGCCGCACTGACA 59.680 50.000 0.00 0.00 0.00 3.58
2578 3232 0.536724 TCTGTATGCCGCACTGACAT 59.463 50.000 0.00 0.00 0.00 3.06
2579 3233 0.654160 CTGTATGCCGCACTGACATG 59.346 55.000 0.00 0.00 0.00 3.21
2580 3234 0.036483 TGTATGCCGCACTGACATGT 60.036 50.000 0.00 0.00 0.00 3.21
2581 3235 0.374758 GTATGCCGCACTGACATGTG 59.625 55.000 1.15 0.00 40.62 3.21
2582 3236 0.036483 TATGCCGCACTGACATGTGT 60.036 50.000 1.15 0.00 39.89 3.72
2583 3237 0.036483 ATGCCGCACTGACATGTGTA 60.036 50.000 1.15 0.00 39.89 2.90
2584 3238 0.250081 TGCCGCACTGACATGTGTAA 60.250 50.000 1.15 0.00 39.89 2.41
2585 3239 1.086696 GCCGCACTGACATGTGTAAT 58.913 50.000 1.15 0.00 39.89 1.89
2586 3240 1.202065 GCCGCACTGACATGTGTAATG 60.202 52.381 1.15 0.00 39.89 1.90
2587 3241 1.398041 CCGCACTGACATGTGTAATGG 59.602 52.381 1.15 0.00 39.89 3.16
2588 3242 1.398041 CGCACTGACATGTGTAATGGG 59.602 52.381 1.15 0.77 39.89 4.00
2589 3243 2.436417 GCACTGACATGTGTAATGGGT 58.564 47.619 1.15 0.00 39.89 4.51
2590 3244 3.605634 GCACTGACATGTGTAATGGGTA 58.394 45.455 1.15 0.00 39.89 3.69
2591 3245 3.623060 GCACTGACATGTGTAATGGGTAG 59.377 47.826 1.15 0.00 39.89 3.18
2592 3246 4.622933 GCACTGACATGTGTAATGGGTAGA 60.623 45.833 1.15 0.00 39.89 2.59
2593 3247 5.111989 CACTGACATGTGTAATGGGTAGAG 58.888 45.833 1.15 0.00 33.61 2.43
2594 3248 5.023452 ACTGACATGTGTAATGGGTAGAGA 58.977 41.667 1.15 0.00 0.00 3.10
2595 3249 5.127845 ACTGACATGTGTAATGGGTAGAGAG 59.872 44.000 1.15 0.00 0.00 3.20
2596 3250 4.405680 TGACATGTGTAATGGGTAGAGAGG 59.594 45.833 1.15 0.00 0.00 3.69
2597 3251 4.620723 ACATGTGTAATGGGTAGAGAGGA 58.379 43.478 0.00 0.00 0.00 3.71
2598 3252 5.030147 ACATGTGTAATGGGTAGAGAGGAA 58.970 41.667 0.00 0.00 0.00 3.36
2599 3253 5.104900 ACATGTGTAATGGGTAGAGAGGAAC 60.105 44.000 0.00 0.00 0.00 3.62
2600 3254 3.773119 TGTGTAATGGGTAGAGAGGAACC 59.227 47.826 0.00 0.00 34.85 3.62
2601 3255 3.028850 TGTAATGGGTAGAGAGGAACCG 58.971 50.000 0.00 0.00 36.57 4.44
2602 3256 2.249309 AATGGGTAGAGAGGAACCGT 57.751 50.000 0.00 0.00 36.57 4.83
2603 3257 2.249309 ATGGGTAGAGAGGAACCGTT 57.751 50.000 0.00 0.00 36.57 4.44
2604 3258 2.905415 TGGGTAGAGAGGAACCGTTA 57.095 50.000 0.00 0.00 36.57 3.18
2605 3259 2.450476 TGGGTAGAGAGGAACCGTTAC 58.550 52.381 0.00 0.00 36.57 2.50
2606 3260 1.753649 GGGTAGAGAGGAACCGTTACC 59.246 57.143 0.00 0.00 36.57 2.85
2607 3261 2.450476 GGTAGAGAGGAACCGTTACCA 58.550 52.381 0.00 0.00 32.69 3.25
2608 3262 2.827921 GGTAGAGAGGAACCGTTACCAA 59.172 50.000 0.00 0.00 32.69 3.67
2609 3263 3.367806 GGTAGAGAGGAACCGTTACCAAC 60.368 52.174 0.00 0.00 32.69 3.77
2619 3273 2.830264 GTTACCAACGGTGATGCGA 58.170 52.632 0.00 0.00 36.19 5.10
2620 3274 0.719465 GTTACCAACGGTGATGCGAG 59.281 55.000 0.00 0.00 36.19 5.03
2621 3275 0.319083 TTACCAACGGTGATGCGAGT 59.681 50.000 0.00 0.00 36.19 4.18
2622 3276 0.389296 TACCAACGGTGATGCGAGTG 60.389 55.000 0.00 0.00 36.19 3.51
2623 3277 2.390599 CCAACGGTGATGCGAGTGG 61.391 63.158 0.00 0.00 0.00 4.00
2624 3278 2.047274 AACGGTGATGCGAGTGGG 60.047 61.111 0.00 0.00 0.00 4.61
2625 3279 2.579657 AACGGTGATGCGAGTGGGA 61.580 57.895 0.00 0.00 0.00 4.37
2626 3280 2.202797 CGGTGATGCGAGTGGGAG 60.203 66.667 0.00 0.00 0.00 4.30
2627 3281 2.982130 GGTGATGCGAGTGGGAGT 59.018 61.111 0.00 0.00 0.00 3.85
2628 3282 1.663379 CGGTGATGCGAGTGGGAGTA 61.663 60.000 0.00 0.00 0.00 2.59
2629 3283 0.753262 GGTGATGCGAGTGGGAGTAT 59.247 55.000 0.00 0.00 0.00 2.12
2630 3284 1.539065 GGTGATGCGAGTGGGAGTATG 60.539 57.143 0.00 0.00 0.00 2.39
2631 3285 1.409064 GTGATGCGAGTGGGAGTATGA 59.591 52.381 0.00 0.00 0.00 2.15
2632 3286 2.107366 TGATGCGAGTGGGAGTATGAA 58.893 47.619 0.00 0.00 0.00 2.57
2633 3287 2.159099 TGATGCGAGTGGGAGTATGAAC 60.159 50.000 0.00 0.00 0.00 3.18
2634 3288 1.262417 TGCGAGTGGGAGTATGAACA 58.738 50.000 0.00 0.00 0.00 3.18
2635 3289 1.204704 TGCGAGTGGGAGTATGAACAG 59.795 52.381 0.00 0.00 0.00 3.16
2636 3290 1.471676 GCGAGTGGGAGTATGAACAGG 60.472 57.143 0.00 0.00 0.00 4.00
2637 3291 2.100197 CGAGTGGGAGTATGAACAGGA 58.900 52.381 0.00 0.00 0.00 3.86
2638 3292 2.099921 CGAGTGGGAGTATGAACAGGAG 59.900 54.545 0.00 0.00 0.00 3.69
2639 3293 3.100671 GAGTGGGAGTATGAACAGGAGT 58.899 50.000 0.00 0.00 0.00 3.85
2640 3294 2.834549 AGTGGGAGTATGAACAGGAGTG 59.165 50.000 0.00 0.00 0.00 3.51
2641 3295 2.093447 GTGGGAGTATGAACAGGAGTGG 60.093 54.545 0.00 0.00 0.00 4.00
2642 3296 1.134371 GGGAGTATGAACAGGAGTGGC 60.134 57.143 0.00 0.00 0.00 5.01
2643 3297 1.471676 GGAGTATGAACAGGAGTGGCG 60.472 57.143 0.00 0.00 0.00 5.69
2644 3298 0.537188 AGTATGAACAGGAGTGGCGG 59.463 55.000 0.00 0.00 0.00 6.13
2645 3299 0.535335 GTATGAACAGGAGTGGCGGA 59.465 55.000 0.00 0.00 0.00 5.54
2646 3300 0.535335 TATGAACAGGAGTGGCGGAC 59.465 55.000 0.00 0.00 0.00 4.79
2647 3301 2.432628 GAACAGGAGTGGCGGACG 60.433 66.667 0.00 0.00 0.00 4.79
2648 3302 3.222354 GAACAGGAGTGGCGGACGT 62.222 63.158 0.00 0.00 0.00 4.34
2649 3303 3.515316 AACAGGAGTGGCGGACGTG 62.515 63.158 0.00 0.00 0.00 4.49
2650 3304 3.680786 CAGGAGTGGCGGACGTGA 61.681 66.667 0.00 0.00 0.00 4.35
2651 3305 2.915659 AGGAGTGGCGGACGTGAA 60.916 61.111 0.00 0.00 0.00 3.18
2652 3306 2.432628 GGAGTGGCGGACGTGAAG 60.433 66.667 0.00 0.00 0.00 3.02
2653 3307 2.649034 GAGTGGCGGACGTGAAGA 59.351 61.111 0.00 0.00 0.00 2.87
2654 3308 1.444553 GAGTGGCGGACGTGAAGAG 60.445 63.158 0.00 0.00 0.00 2.85
2655 3309 1.863662 GAGTGGCGGACGTGAAGAGA 61.864 60.000 0.00 0.00 0.00 3.10
2656 3310 1.444553 GTGGCGGACGTGAAGAGAG 60.445 63.158 0.00 0.00 0.00 3.20
2657 3311 1.602605 TGGCGGACGTGAAGAGAGA 60.603 57.895 0.00 0.00 0.00 3.10
2658 3312 1.153997 GGCGGACGTGAAGAGAGAC 60.154 63.158 0.00 0.00 0.00 3.36
2659 3313 1.153997 GCGGACGTGAAGAGAGACC 60.154 63.158 0.00 0.00 0.00 3.85
2660 3314 1.863662 GCGGACGTGAAGAGAGACCA 61.864 60.000 0.00 0.00 0.00 4.02
2661 3315 0.596577 CGGACGTGAAGAGAGACCAA 59.403 55.000 0.00 0.00 0.00 3.67
2662 3316 1.202582 CGGACGTGAAGAGAGACCAAT 59.797 52.381 0.00 0.00 0.00 3.16
2663 3317 2.611518 GGACGTGAAGAGAGACCAATG 58.388 52.381 0.00 0.00 0.00 2.82
2664 3318 2.611518 GACGTGAAGAGAGACCAATGG 58.388 52.381 0.00 0.00 0.00 3.16
2665 3319 1.276421 ACGTGAAGAGAGACCAATGGG 59.724 52.381 3.55 0.00 41.29 4.00
2767 3432 7.857389 CACCAAATCATTCTTTACATGGTATCG 59.143 37.037 0.00 0.00 37.82 2.92
2777 3442 3.179443 ACATGGTATCGATCGCAAGTT 57.821 42.857 11.09 0.00 39.48 2.66
2869 3642 4.814294 CTACCCACGCGTGCCTCC 62.814 72.222 33.17 0.00 0.00 4.30
2898 3671 2.122989 GTCCTATCCTCCCCGCCA 60.123 66.667 0.00 0.00 0.00 5.69
3004 3822 2.534396 ATGTCGCCCAACCCCTTCA 61.534 57.895 0.00 0.00 0.00 3.02
3009 3827 2.282180 CCCAACCCCTTCACCGTG 60.282 66.667 0.00 0.00 0.00 4.94
3047 3865 0.531974 AACATCAACGTCCACGCACT 60.532 50.000 0.00 0.00 44.43 4.40
3067 3885 2.050350 GTCCCCGTCATCCTCGACA 61.050 63.158 0.00 0.00 35.54 4.35
3081 3899 0.757561 TCGACACCTCCAACTCCACA 60.758 55.000 0.00 0.00 0.00 4.17
3090 3908 1.899814 TCCAACTCCACATACTTCGCT 59.100 47.619 0.00 0.00 0.00 4.93
3144 3962 2.859165 ACAACCTCGTGGATCATGTT 57.141 45.000 11.17 0.00 37.04 2.71
3152 3970 1.382522 GTGGATCATGTTGACGGCAT 58.617 50.000 0.00 0.00 0.00 4.40
3190 4008 4.608774 TGGACGACCCCGAGTGGT 62.609 66.667 0.34 0.00 40.56 4.16
3198 4016 4.143333 CCCGAGTGGTCCGCGATT 62.143 66.667 8.23 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.199880 AGATCTCAATGCCCGTTTAGG 57.800 47.619 0.00 0.00 40.63 2.69
10 11 5.276868 CGTTAAGATCTCAATGCCCGTTTAG 60.277 44.000 0.00 0.00 0.00 1.85
11 12 4.569162 CGTTAAGATCTCAATGCCCGTTTA 59.431 41.667 0.00 0.00 0.00 2.01
12 13 3.374058 CGTTAAGATCTCAATGCCCGTTT 59.626 43.478 0.00 0.00 0.00 3.60
13 14 2.936498 CGTTAAGATCTCAATGCCCGTT 59.064 45.455 0.00 0.00 0.00 4.44
14 15 2.167693 TCGTTAAGATCTCAATGCCCGT 59.832 45.455 0.00 0.00 0.00 5.28
15 16 2.797156 CTCGTTAAGATCTCAATGCCCG 59.203 50.000 0.00 0.00 0.00 6.13
16 17 2.545946 GCTCGTTAAGATCTCAATGCCC 59.454 50.000 0.00 0.00 0.00 5.36
17 18 2.219674 CGCTCGTTAAGATCTCAATGCC 59.780 50.000 0.00 0.00 0.00 4.40
18 19 2.860735 ACGCTCGTTAAGATCTCAATGC 59.139 45.455 0.00 0.00 0.00 3.56
19 20 4.259970 CCAACGCTCGTTAAGATCTCAATG 60.260 45.833 7.37 0.00 36.46 2.82
20 21 3.865745 CCAACGCTCGTTAAGATCTCAAT 59.134 43.478 7.37 0.00 36.46 2.57
21 22 3.250744 CCAACGCTCGTTAAGATCTCAA 58.749 45.455 7.37 0.00 36.46 3.02
22 23 2.416836 CCCAACGCTCGTTAAGATCTCA 60.417 50.000 7.37 0.00 36.46 3.27
23 24 2.159282 TCCCAACGCTCGTTAAGATCTC 60.159 50.000 7.37 0.00 36.46 2.75
24 25 1.822990 TCCCAACGCTCGTTAAGATCT 59.177 47.619 7.37 0.00 36.46 2.75
25 26 2.288961 TCCCAACGCTCGTTAAGATC 57.711 50.000 7.37 0.00 36.46 2.75
26 27 2.289195 TGTTCCCAACGCTCGTTAAGAT 60.289 45.455 7.37 0.00 36.46 2.40
27 28 1.068895 TGTTCCCAACGCTCGTTAAGA 59.931 47.619 7.37 4.99 36.46 2.10
28 29 1.504359 TGTTCCCAACGCTCGTTAAG 58.496 50.000 7.37 2.74 36.46 1.85
29 30 1.868498 CTTGTTCCCAACGCTCGTTAA 59.132 47.619 7.37 0.00 36.46 2.01
30 31 1.504359 CTTGTTCCCAACGCTCGTTA 58.496 50.000 7.37 0.00 36.46 3.18
31 32 1.782028 GCTTGTTCCCAACGCTCGTT 61.782 55.000 1.37 1.37 39.13 3.85
32 33 2.251642 GCTTGTTCCCAACGCTCGT 61.252 57.895 0.00 0.00 0.00 4.18
33 34 2.556287 GCTTGTTCCCAACGCTCG 59.444 61.111 0.00 0.00 0.00 5.03
34 35 2.954611 GGCTTGTTCCCAACGCTC 59.045 61.111 0.00 0.00 0.00 5.03
35 36 2.951475 TTCGGCTTGTTCCCAACGCT 62.951 55.000 0.00 0.00 0.00 5.07
36 37 2.548295 TTCGGCTTGTTCCCAACGC 61.548 57.895 0.00 0.00 0.00 4.84
37 38 1.281656 GTTCGGCTTGTTCCCAACG 59.718 57.895 0.00 0.00 0.00 4.10
38 39 0.741915 TTGTTCGGCTTGTTCCCAAC 59.258 50.000 0.00 0.00 0.00 3.77
39 40 1.028905 CTTGTTCGGCTTGTTCCCAA 58.971 50.000 0.00 0.00 0.00 4.12
40 41 1.452145 GCTTGTTCGGCTTGTTCCCA 61.452 55.000 0.00 0.00 0.00 4.37
41 42 1.285950 GCTTGTTCGGCTTGTTCCC 59.714 57.895 0.00 0.00 0.00 3.97
42 43 0.383949 TTGCTTGTTCGGCTTGTTCC 59.616 50.000 0.00 0.00 0.00 3.62
43 44 2.202295 TTTGCTTGTTCGGCTTGTTC 57.798 45.000 0.00 0.00 0.00 3.18
44 45 2.742774 GATTTGCTTGTTCGGCTTGTT 58.257 42.857 0.00 0.00 0.00 2.83
45 46 1.334960 CGATTTGCTTGTTCGGCTTGT 60.335 47.619 0.00 0.00 0.00 3.16
46 47 1.069296 TCGATTTGCTTGTTCGGCTTG 60.069 47.619 0.00 0.00 33.82 4.01
47 48 1.069227 GTCGATTTGCTTGTTCGGCTT 60.069 47.619 0.00 0.00 34.81 4.35
48 49 0.517316 GTCGATTTGCTTGTTCGGCT 59.483 50.000 0.00 0.00 34.81 5.52
49 50 0.517316 AGTCGATTTGCTTGTTCGGC 59.483 50.000 0.00 0.00 37.74 5.54
50 51 1.531149 ACAGTCGATTTGCTTGTTCGG 59.469 47.619 0.00 0.00 33.82 4.30
51 52 2.411547 GGACAGTCGATTTGCTTGTTCG 60.412 50.000 0.00 0.00 0.00 3.95
52 53 2.095718 GGGACAGTCGATTTGCTTGTTC 60.096 50.000 0.00 0.00 0.00 3.18
53 54 1.880027 GGGACAGTCGATTTGCTTGTT 59.120 47.619 0.00 0.00 0.00 2.83
70 71 2.572556 TCGGCTTACACCTTATTTGGGA 59.427 45.455 0.00 0.00 0.00 4.37
74 75 4.850680 TGGAATCGGCTTACACCTTATTT 58.149 39.130 0.00 0.00 0.00 1.40
76 77 4.505039 GGATGGAATCGGCTTACACCTTAT 60.505 45.833 0.00 0.00 46.86 1.73
82 83 2.639065 GTTGGATGGAATCGGCTTACA 58.361 47.619 0.00 0.00 46.86 2.41
88 89 1.102978 GTTGGGTTGGATGGAATCGG 58.897 55.000 0.00 0.00 46.86 4.18
97 99 2.383855 CTTTTGGTCTGTTGGGTTGGA 58.616 47.619 0.00 0.00 0.00 3.53
101 103 1.111277 GTGCTTTTGGTCTGTTGGGT 58.889 50.000 0.00 0.00 0.00 4.51
121 123 3.860536 GCGTTTGTTTGTTTTTCTGGCTA 59.139 39.130 0.00 0.00 0.00 3.93
125 127 4.384247 TCTGTGCGTTTGTTTGTTTTTCTG 59.616 37.500 0.00 0.00 0.00 3.02
133 136 3.248363 TCTGAGATCTGTGCGTTTGTTTG 59.752 43.478 0.00 0.00 0.00 2.93
137 140 2.802247 TGTTCTGAGATCTGTGCGTTTG 59.198 45.455 0.00 0.00 0.00 2.93
146 149 4.753233 CCGTTTGATCTGTTCTGAGATCT 58.247 43.478 10.93 0.00 45.98 2.75
147 150 3.308323 GCCGTTTGATCTGTTCTGAGATC 59.692 47.826 0.00 0.00 46.00 2.75
153 156 2.270352 TTGGCCGTTTGATCTGTTCT 57.730 45.000 0.00 0.00 0.00 3.01
163 166 1.270550 CAGCTGATCTTTTGGCCGTTT 59.729 47.619 8.42 0.00 0.00 3.60
175 178 4.989279 TTTGAATTTAGGCCAGCTGATC 57.011 40.909 17.39 6.73 0.00 2.92
179 182 3.261390 TGCATTTTGAATTTAGGCCAGCT 59.739 39.130 5.01 0.00 0.00 4.24
180 183 3.598299 TGCATTTTGAATTTAGGCCAGC 58.402 40.909 5.01 0.00 0.00 4.85
187 190 5.243507 TGAGTCAGCCTGCATTTTGAATTTA 59.756 36.000 0.00 0.00 0.00 1.40
205 208 5.468540 ACACTTTAGCTACATGTGAGTCA 57.531 39.130 20.12 0.00 33.41 3.41
228 236 9.705290 GTTTTTGTGGGAAACAGTGAATATATT 57.295 29.630 0.00 0.00 40.74 1.28
240 248 9.495572 TGGATTATTATTGTTTTTGTGGGAAAC 57.504 29.630 0.00 0.00 37.48 2.78
301 309 1.345176 GTCCGGAGTACGTACGTCG 59.655 63.158 26.53 25.63 46.00 5.12
309 317 0.109412 CCTTCACACGTCCGGAGTAC 60.109 60.000 3.06 0.00 0.00 2.73
316 328 1.066918 ACGTCACCTTCACACGTCC 59.933 57.895 0.00 0.00 43.04 4.79
338 350 2.490903 CAACCCAAGATCTTTGCTGAGG 59.509 50.000 4.86 2.66 0.00 3.86
339 351 2.094854 GCAACCCAAGATCTTTGCTGAG 60.095 50.000 18.44 2.60 40.97 3.35
359 371 3.381169 ATTTCGTCATGGCGCGTGC 62.381 57.895 16.44 13.78 41.71 5.34
360 372 1.580893 CATTTCGTCATGGCGCGTG 60.581 57.895 16.44 9.52 0.00 5.34
361 373 2.749865 CCATTTCGTCATGGCGCGT 61.750 57.895 16.44 0.00 37.51 6.01
362 374 2.023181 CCATTTCGTCATGGCGCG 59.977 61.111 16.44 0.00 37.51 6.86
363 375 1.353103 CTCCATTTCGTCATGGCGC 59.647 57.895 16.44 0.00 43.31 6.53
364 376 1.353103 GCTCCATTTCGTCATGGCG 59.647 57.895 14.91 14.91 43.31 5.69
365 377 0.099436 GTGCTCCATTTCGTCATGGC 59.901 55.000 9.91 0.00 43.31 4.40
366 378 0.374758 CGTGCTCCATTTCGTCATGG 59.625 55.000 8.78 8.78 44.80 3.66
367 379 1.078709 ACGTGCTCCATTTCGTCATG 58.921 50.000 0.00 0.00 30.71 3.07
368 380 3.532896 ACGTGCTCCATTTCGTCAT 57.467 47.368 0.00 0.00 30.71 3.06
404 416 2.675317 CGTTCTTCATCCTCACTCCACC 60.675 54.545 0.00 0.00 0.00 4.61
414 426 1.092345 GCTGCCCTCGTTCTTCATCC 61.092 60.000 0.00 0.00 0.00 3.51
432 444 0.176680 TGTCTAGCTAGCTGGCTTGC 59.823 55.000 30.52 21.59 42.97 4.01
474 488 5.698089 CGTAGGGACGTTCTAGATGTACATA 59.302 44.000 8.71 4.66 44.31 2.29
475 489 4.514441 CGTAGGGACGTTCTAGATGTACAT 59.486 45.833 8.43 8.43 44.31 2.29
476 490 3.873361 CGTAGGGACGTTCTAGATGTACA 59.127 47.826 0.00 0.00 44.31 2.90
477 491 4.465040 CGTAGGGACGTTCTAGATGTAC 57.535 50.000 0.00 0.00 44.31 2.90
520 534 0.539986 TCTTGGGAGCCCGAATGTAC 59.460 55.000 0.29 0.00 39.42 2.90
549 563 5.632959 ACGTATAATGAGAGATTAGCGAGC 58.367 41.667 0.00 0.00 0.00 5.03
550 564 7.423030 CGTTACGTATAATGAGAGATTAGCGAG 59.577 40.741 0.00 0.00 29.89 5.03
552 566 7.014115 ACGTTACGTATAATGAGAGATTAGCG 58.986 38.462 9.22 0.00 38.73 4.26
554 568 9.874215 TGAACGTTACGTATAATGAGAGATTAG 57.126 33.333 11.79 0.00 39.99 1.73
555 569 9.874215 CTGAACGTTACGTATAATGAGAGATTA 57.126 33.333 11.79 0.00 39.99 1.75
556 570 8.618677 TCTGAACGTTACGTATAATGAGAGATT 58.381 33.333 11.79 0.00 39.99 2.40
557 571 8.151141 TCTGAACGTTACGTATAATGAGAGAT 57.849 34.615 11.79 0.00 39.99 2.75
559 573 8.521860 GTTTCTGAACGTTACGTATAATGAGAG 58.478 37.037 11.79 0.00 39.99 3.20
560 574 8.022550 TGTTTCTGAACGTTACGTATAATGAGA 58.977 33.333 11.79 1.27 39.99 3.27
562 576 8.518151 TTGTTTCTGAACGTTACGTATAATGA 57.482 30.769 11.79 3.08 39.99 2.57
563 577 9.194716 CATTGTTTCTGAACGTTACGTATAATG 57.805 33.333 11.79 10.46 39.99 1.90
564 578 7.901377 GCATTGTTTCTGAACGTTACGTATAAT 59.099 33.333 11.79 1.60 39.99 1.28
565 579 7.095732 TGCATTGTTTCTGAACGTTACGTATAA 60.096 33.333 11.79 0.00 39.99 0.98
566 580 6.365518 TGCATTGTTTCTGAACGTTACGTATA 59.634 34.615 11.79 2.18 39.99 1.47
567 581 5.177881 TGCATTGTTTCTGAACGTTACGTAT 59.822 36.000 11.79 1.27 39.99 3.06
568 582 4.507021 TGCATTGTTTCTGAACGTTACGTA 59.493 37.500 11.79 0.00 39.99 3.57
569 583 3.310227 TGCATTGTTTCTGAACGTTACGT 59.690 39.130 3.95 3.95 43.97 3.57
570 584 3.867665 TGCATTGTTTCTGAACGTTACG 58.132 40.909 0.00 2.19 38.65 3.18
571 585 4.088496 GCATGCATTGTTTCTGAACGTTAC 59.912 41.667 14.21 0.00 38.65 2.50
572 586 4.225984 GCATGCATTGTTTCTGAACGTTA 58.774 39.130 14.21 0.00 38.65 3.18
573 587 3.052036 GCATGCATTGTTTCTGAACGTT 58.948 40.909 14.21 0.00 38.65 3.99
578 592 1.067425 GCCTGCATGCATTGTTTCTGA 60.067 47.619 22.97 0.00 0.00 3.27
584 598 4.137872 GCCGCCTGCATGCATTGT 62.138 61.111 22.97 0.00 40.77 2.71
620 652 5.352643 CATATGTGCATGTGATACTGTGG 57.647 43.478 3.29 0.00 32.49 4.17
635 667 3.320626 ACCGATCGAGAATGCATATGTG 58.679 45.455 18.66 0.00 0.00 3.21
636 668 3.667497 ACCGATCGAGAATGCATATGT 57.333 42.857 18.66 0.00 0.00 2.29
639 671 3.255888 AGCTTACCGATCGAGAATGCATA 59.744 43.478 18.66 0.00 0.00 3.14
675 712 0.597637 TAGCTTAGCGAGAATGCGGC 60.598 55.000 0.00 0.00 40.67 6.53
677 714 1.518929 GTGTAGCTTAGCGAGAATGCG 59.481 52.381 0.00 0.00 40.67 4.73
716 753 6.646636 CGCTGGCATAGTTAATTAGTAACAC 58.353 40.000 5.38 0.00 44.03 3.32
758 795 2.022195 CGGTGCAACTAGCTACTCCTA 58.978 52.381 0.00 0.00 45.94 2.94
759 796 0.818296 CGGTGCAACTAGCTACTCCT 59.182 55.000 0.00 0.00 45.94 3.69
760 797 0.179108 CCGGTGCAACTAGCTACTCC 60.179 60.000 0.00 0.00 45.94 3.85
761 798 0.815734 TCCGGTGCAACTAGCTACTC 59.184 55.000 0.00 0.00 45.94 2.59
762 799 0.531200 GTCCGGTGCAACTAGCTACT 59.469 55.000 0.00 0.00 45.94 2.57
763 800 0.801067 CGTCCGGTGCAACTAGCTAC 60.801 60.000 0.00 0.00 45.94 3.58
788 825 0.739462 AAACTTCGCCATCGATCGCA 60.739 50.000 15.39 0.00 45.04 5.10
828 867 4.081642 CCAAAGTCAGATTTACCTCTCGGA 60.082 45.833 0.00 0.00 0.00 4.55
879 922 0.645868 GTCGCGTCCTTGCAAGATAC 59.354 55.000 28.05 21.72 34.15 2.24
893 938 1.137459 TATAGTGCAGTTGCGTCGCG 61.137 55.000 13.38 0.00 45.83 5.87
993 1050 2.202703 GACGCCGCCATCGTAAGT 60.203 61.111 0.00 0.00 40.59 2.24
1229 1777 3.568430 CAGACAAGTGCATGCATATGGAT 59.432 43.478 28.38 18.47 36.99 3.41
1244 1794 2.741612 GATCGATCTGAGCCAGACAAG 58.258 52.381 18.29 3.15 43.63 3.16
1248 1798 1.902938 ATCGATCGATCTGAGCCAGA 58.097 50.000 24.60 11.04 44.99 3.86
1290 1856 5.177881 TGCCAAAATTATATACTGTACGCGG 59.822 40.000 12.47 0.00 0.00 6.46
1365 1934 2.319219 CGGAGTAGTCGGAGTAGCC 58.681 63.158 0.00 0.00 0.00 3.93
1400 1969 1.963190 GATGTTCCCGAACGCGTTCC 61.963 60.000 38.04 26.53 43.94 3.62
1407 1976 1.450025 GGGAGTTGATGTTCCCGAAC 58.550 55.000 0.46 0.46 43.40 3.95
1428 1997 4.415332 ATGACGTCGAAGCCGCGT 62.415 61.111 11.62 0.00 45.54 6.01
1440 2009 1.590238 GTCTTGATCTTGGCGATGACG 59.410 52.381 0.00 0.00 42.93 4.35
1448 2017 1.081892 CACTGCGGTCTTGATCTTGG 58.918 55.000 0.00 0.00 0.00 3.61
1451 2020 0.534412 CTCCACTGCGGTCTTGATCT 59.466 55.000 0.00 0.00 35.57 2.75
1534 2103 2.053627 CACCACGTAACGTACCAGAAC 58.946 52.381 0.00 0.00 38.32 3.01
1560 2132 2.472695 TTATCTGCACTGTTTCCGCT 57.527 45.000 0.00 0.00 0.00 5.52
1585 2157 3.081061 TGAATGTACTCGCAAGGCATTT 58.919 40.909 0.00 0.00 34.52 2.32
1586 2158 2.710377 TGAATGTACTCGCAAGGCATT 58.290 42.857 0.00 0.00 35.97 3.56
1587 2159 2.401583 TGAATGTACTCGCAAGGCAT 57.598 45.000 0.00 0.00 38.47 4.40
1596 2168 3.485216 CGCCGGTTGAAATGAATGTACTC 60.485 47.826 1.90 0.00 0.00 2.59
1743 2337 2.490217 CGCTACCGTCAGGACTGG 59.510 66.667 0.00 8.19 41.02 4.00
1745 2339 2.754658 CCCGCTACCGTCAGGACT 60.755 66.667 0.00 0.00 41.02 3.85
1746 2340 4.509737 GCCCGCTACCGTCAGGAC 62.510 72.222 0.00 0.00 41.02 3.85
1756 2350 1.899054 CCTCTCGATGAGCCCGCTA 60.899 63.158 6.42 0.00 41.35 4.26
1770 2364 1.545706 GCCCTTCCTGACGAACCTCT 61.546 60.000 0.00 0.00 0.00 3.69
1799 2393 2.583593 GAGCACGGTCATCTCGGC 60.584 66.667 0.00 0.00 0.00 5.54
1881 2475 1.267532 CGAACTGAAAATCGATGCGGG 60.268 52.381 0.00 0.00 41.43 6.13
1943 2537 2.030562 CGCCAGGAAGGTGTCGTT 59.969 61.111 0.00 0.00 43.15 3.85
2047 2641 1.132657 TGGTTGTTCTGGGGGTAGAGA 60.133 52.381 0.00 0.00 0.00 3.10
2050 2644 1.003233 GTCTGGTTGTTCTGGGGGTAG 59.997 57.143 0.00 0.00 0.00 3.18
2076 2670 7.903145 TCCTTTGTACTTGAGCACTATCTTAA 58.097 34.615 0.00 0.00 0.00 1.85
2206 2800 1.461317 CGTACGATCAGCGGTTGACG 61.461 60.000 10.44 12.43 46.49 4.35
2214 2808 2.025727 CCGGACCGTACGATCAGC 59.974 66.667 18.76 0.00 0.00 4.26
2263 2860 9.538508 ACGTCGCCTTTATTTATCTTTATAGTT 57.461 29.630 0.00 0.00 0.00 2.24
2264 2861 9.538508 AACGTCGCCTTTATTTATCTTTATAGT 57.461 29.630 0.00 0.00 0.00 2.12
2267 2864 8.671028 ACAAACGTCGCCTTTATTTATCTTTAT 58.329 29.630 0.00 0.00 0.00 1.40
2282 2879 8.633408 CATAGTATAGTTATTACAAACGTCGCC 58.367 37.037 0.00 0.00 34.46 5.54
2309 2925 3.243569 GCCAGTACTCCTATGTAGCACAG 60.244 52.174 0.00 0.00 0.00 3.66
2321 2975 4.813750 TTTACCAGTAAGCCAGTACTCC 57.186 45.455 0.00 0.00 31.78 3.85
2322 2976 5.791666 AGTTTTACCAGTAAGCCAGTACTC 58.208 41.667 0.00 0.00 31.78 2.59
2323 2977 5.820404 AGTTTTACCAGTAAGCCAGTACT 57.180 39.130 0.00 0.00 34.56 2.73
2324 2978 9.657419 TTAATAGTTTTACCAGTAAGCCAGTAC 57.343 33.333 0.00 0.00 0.00 2.73
2326 2980 9.392259 GATTAATAGTTTTACCAGTAAGCCAGT 57.608 33.333 0.00 0.00 0.00 4.00
2369 3023 6.932356 AACATAGTACATGATTTGGAGCTG 57.068 37.500 0.00 0.00 0.00 4.24
2424 3078 9.790389 ATAATAATATTGTTTCCGTCGCAAAAA 57.210 25.926 2.55 0.00 0.00 1.94
2425 3079 9.440784 GATAATAATATTGTTTCCGTCGCAAAA 57.559 29.630 2.55 0.00 0.00 2.44
2426 3080 8.613482 TGATAATAATATTGTTTCCGTCGCAAA 58.387 29.630 2.55 0.00 0.00 3.68
2427 3081 8.144155 TGATAATAATATTGTTTCCGTCGCAA 57.856 30.769 2.55 0.00 0.00 4.85
2428 3082 7.716768 TGATAATAATATTGTTTCCGTCGCA 57.283 32.000 2.55 0.00 0.00 5.10
2429 3083 8.065407 TGTTGATAATAATATTGTTTCCGTCGC 58.935 33.333 2.55 0.00 0.00 5.19
2430 3084 9.923786 TTGTTGATAATAATATTGTTTCCGTCG 57.076 29.630 2.55 0.00 0.00 5.12
2444 3098 8.623903 GGATCATCTTGCTGTTGTTGATAATAA 58.376 33.333 0.00 0.00 0.00 1.40
2445 3099 7.994911 AGGATCATCTTGCTGTTGTTGATAATA 59.005 33.333 0.00 0.00 0.00 0.98
2446 3100 6.832384 AGGATCATCTTGCTGTTGTTGATAAT 59.168 34.615 0.00 0.00 0.00 1.28
2447 3101 6.182627 AGGATCATCTTGCTGTTGTTGATAA 58.817 36.000 0.00 0.00 0.00 1.75
2448 3102 5.748402 AGGATCATCTTGCTGTTGTTGATA 58.252 37.500 0.00 0.00 0.00 2.15
2449 3103 4.597004 AGGATCATCTTGCTGTTGTTGAT 58.403 39.130 0.00 0.00 0.00 2.57
2450 3104 4.005650 GAGGATCATCTTGCTGTTGTTGA 58.994 43.478 0.00 0.00 33.17 3.18
2451 3105 3.754850 TGAGGATCATCTTGCTGTTGTTG 59.245 43.478 9.07 0.00 42.56 3.33
2452 3106 4.025040 TGAGGATCATCTTGCTGTTGTT 57.975 40.909 9.07 0.00 42.56 2.83
2453 3107 3.708403 TGAGGATCATCTTGCTGTTGT 57.292 42.857 9.07 0.00 42.56 3.32
2501 3155 5.124776 CACCGGGCACAATTAAGAAAAGATA 59.875 40.000 6.32 0.00 0.00 1.98
2522 3176 4.524053 AGAAATTAACCTCGGGATTCACC 58.476 43.478 0.00 0.00 38.08 4.02
2547 3201 2.565841 GCATACAGAACCCAGACCATC 58.434 52.381 0.00 0.00 0.00 3.51
2548 3202 1.212935 GGCATACAGAACCCAGACCAT 59.787 52.381 0.00 0.00 0.00 3.55
2549 3203 0.618458 GGCATACAGAACCCAGACCA 59.382 55.000 0.00 0.00 0.00 4.02
2550 3204 0.462047 CGGCATACAGAACCCAGACC 60.462 60.000 0.00 0.00 0.00 3.85
2551 3205 1.090052 GCGGCATACAGAACCCAGAC 61.090 60.000 0.00 0.00 0.00 3.51
2552 3206 1.220749 GCGGCATACAGAACCCAGA 59.779 57.895 0.00 0.00 0.00 3.86
2553 3207 1.078497 TGCGGCATACAGAACCCAG 60.078 57.895 0.00 0.00 0.00 4.45
2554 3208 1.376683 GTGCGGCATACAGAACCCA 60.377 57.895 5.72 0.00 0.00 4.51
2555 3209 1.078426 AGTGCGGCATACAGAACCC 60.078 57.895 5.72 0.00 0.00 4.11
2556 3210 0.391130 TCAGTGCGGCATACAGAACC 60.391 55.000 5.72 0.00 0.00 3.62
2557 3211 0.721718 GTCAGTGCGGCATACAGAAC 59.278 55.000 5.72 0.00 0.00 3.01
2558 3212 0.320050 TGTCAGTGCGGCATACAGAA 59.680 50.000 5.72 0.00 0.00 3.02
2559 3213 0.536724 ATGTCAGTGCGGCATACAGA 59.463 50.000 5.72 0.00 0.00 3.41
2560 3214 0.654160 CATGTCAGTGCGGCATACAG 59.346 55.000 5.72 0.00 0.00 2.74
2561 3215 0.036483 ACATGTCAGTGCGGCATACA 60.036 50.000 5.72 11.79 0.00 2.29
2562 3216 0.374758 CACATGTCAGTGCGGCATAC 59.625 55.000 5.72 6.05 32.04 2.39
2563 3217 0.036483 ACACATGTCAGTGCGGCATA 60.036 50.000 5.72 0.00 43.23 3.14
2564 3218 0.036483 TACACATGTCAGTGCGGCAT 60.036 50.000 5.72 0.00 43.23 4.40
2565 3219 0.250081 TTACACATGTCAGTGCGGCA 60.250 50.000 0.00 0.00 43.23 5.69
2566 3220 1.086696 ATTACACATGTCAGTGCGGC 58.913 50.000 0.00 0.00 43.23 6.53
2567 3221 1.398041 CCATTACACATGTCAGTGCGG 59.602 52.381 0.00 0.00 43.23 5.69
2568 3222 1.398041 CCCATTACACATGTCAGTGCG 59.602 52.381 0.00 0.00 43.23 5.34
2569 3223 2.436417 ACCCATTACACATGTCAGTGC 58.564 47.619 0.00 0.00 43.23 4.40
2570 3224 5.084818 TCTACCCATTACACATGTCAGTG 57.915 43.478 0.00 0.00 44.93 3.66
2571 3225 5.023452 TCTCTACCCATTACACATGTCAGT 58.977 41.667 0.00 0.00 0.00 3.41
2572 3226 5.452496 CCTCTCTACCCATTACACATGTCAG 60.452 48.000 0.00 0.00 0.00 3.51
2573 3227 4.405680 CCTCTCTACCCATTACACATGTCA 59.594 45.833 0.00 0.00 0.00 3.58
2574 3228 4.649674 TCCTCTCTACCCATTACACATGTC 59.350 45.833 0.00 0.00 0.00 3.06
2575 3229 4.620723 TCCTCTCTACCCATTACACATGT 58.379 43.478 0.00 0.00 0.00 3.21
2576 3230 5.360591 GTTCCTCTCTACCCATTACACATG 58.639 45.833 0.00 0.00 0.00 3.21
2577 3231 4.409247 GGTTCCTCTCTACCCATTACACAT 59.591 45.833 0.00 0.00 0.00 3.21
2578 3232 3.773119 GGTTCCTCTCTACCCATTACACA 59.227 47.826 0.00 0.00 0.00 3.72
2579 3233 3.181478 CGGTTCCTCTCTACCCATTACAC 60.181 52.174 0.00 0.00 0.00 2.90
2580 3234 3.028850 CGGTTCCTCTCTACCCATTACA 58.971 50.000 0.00 0.00 0.00 2.41
2581 3235 3.029570 ACGGTTCCTCTCTACCCATTAC 58.970 50.000 0.00 0.00 0.00 1.89
2582 3236 3.393426 ACGGTTCCTCTCTACCCATTA 57.607 47.619 0.00 0.00 0.00 1.90
2583 3237 2.249309 ACGGTTCCTCTCTACCCATT 57.751 50.000 0.00 0.00 0.00 3.16
2584 3238 2.249309 AACGGTTCCTCTCTACCCAT 57.751 50.000 0.00 0.00 0.00 4.00
2585 3239 2.450476 GTAACGGTTCCTCTCTACCCA 58.550 52.381 0.00 0.00 0.00 4.51
2586 3240 1.753649 GGTAACGGTTCCTCTCTACCC 59.246 57.143 0.00 0.00 0.00 3.69
2587 3241 2.450476 TGGTAACGGTTCCTCTCTACC 58.550 52.381 0.00 0.00 42.51 3.18
2588 3242 3.842820 GTTGGTAACGGTTCCTCTCTAC 58.157 50.000 0.00 0.00 42.51 2.59
2601 3255 0.719465 CTCGCATCACCGTTGGTAAC 59.281 55.000 0.00 0.00 32.11 2.50
2602 3256 0.319083 ACTCGCATCACCGTTGGTAA 59.681 50.000 0.00 0.00 32.11 2.85
2603 3257 0.389296 CACTCGCATCACCGTTGGTA 60.389 55.000 0.00 0.00 32.11 3.25
2604 3258 1.667830 CACTCGCATCACCGTTGGT 60.668 57.895 0.00 0.00 35.62 3.67
2605 3259 2.390599 CCACTCGCATCACCGTTGG 61.391 63.158 0.00 0.00 0.00 3.77
2606 3260 2.390599 CCCACTCGCATCACCGTTG 61.391 63.158 0.00 0.00 0.00 4.10
2607 3261 2.047274 CCCACTCGCATCACCGTT 60.047 61.111 0.00 0.00 0.00 4.44
2608 3262 2.994995 TCCCACTCGCATCACCGT 60.995 61.111 0.00 0.00 0.00 4.83
2609 3263 1.663379 TACTCCCACTCGCATCACCG 61.663 60.000 0.00 0.00 0.00 4.94
2610 3264 0.753262 ATACTCCCACTCGCATCACC 59.247 55.000 0.00 0.00 0.00 4.02
2611 3265 1.409064 TCATACTCCCACTCGCATCAC 59.591 52.381 0.00 0.00 0.00 3.06
2612 3266 1.775385 TCATACTCCCACTCGCATCA 58.225 50.000 0.00 0.00 0.00 3.07
2613 3267 2.159099 TGTTCATACTCCCACTCGCATC 60.159 50.000 0.00 0.00 0.00 3.91
2614 3268 1.831106 TGTTCATACTCCCACTCGCAT 59.169 47.619 0.00 0.00 0.00 4.73
2615 3269 1.204704 CTGTTCATACTCCCACTCGCA 59.795 52.381 0.00 0.00 0.00 5.10
2616 3270 1.471676 CCTGTTCATACTCCCACTCGC 60.472 57.143 0.00 0.00 0.00 5.03
2617 3271 2.099921 CTCCTGTTCATACTCCCACTCG 59.900 54.545 0.00 0.00 0.00 4.18
2618 3272 3.100671 ACTCCTGTTCATACTCCCACTC 58.899 50.000 0.00 0.00 0.00 3.51
2619 3273 2.834549 CACTCCTGTTCATACTCCCACT 59.165 50.000 0.00 0.00 0.00 4.00
2620 3274 2.093447 CCACTCCTGTTCATACTCCCAC 60.093 54.545 0.00 0.00 0.00 4.61
2621 3275 2.187958 CCACTCCTGTTCATACTCCCA 58.812 52.381 0.00 0.00 0.00 4.37
2622 3276 1.134371 GCCACTCCTGTTCATACTCCC 60.134 57.143 0.00 0.00 0.00 4.30
2623 3277 1.471676 CGCCACTCCTGTTCATACTCC 60.472 57.143 0.00 0.00 0.00 3.85
2624 3278 1.471676 CCGCCACTCCTGTTCATACTC 60.472 57.143 0.00 0.00 0.00 2.59
2625 3279 0.537188 CCGCCACTCCTGTTCATACT 59.463 55.000 0.00 0.00 0.00 2.12
2626 3280 0.535335 TCCGCCACTCCTGTTCATAC 59.465 55.000 0.00 0.00 0.00 2.39
2627 3281 0.535335 GTCCGCCACTCCTGTTCATA 59.465 55.000 0.00 0.00 0.00 2.15
2628 3282 1.296715 GTCCGCCACTCCTGTTCAT 59.703 57.895 0.00 0.00 0.00 2.57
2629 3283 2.741092 GTCCGCCACTCCTGTTCA 59.259 61.111 0.00 0.00 0.00 3.18
2630 3284 2.432628 CGTCCGCCACTCCTGTTC 60.433 66.667 0.00 0.00 0.00 3.18
2631 3285 3.231736 ACGTCCGCCACTCCTGTT 61.232 61.111 0.00 0.00 0.00 3.16
2632 3286 3.991051 CACGTCCGCCACTCCTGT 61.991 66.667 0.00 0.00 0.00 4.00
2633 3287 3.220999 TTCACGTCCGCCACTCCTG 62.221 63.158 0.00 0.00 0.00 3.86
2634 3288 2.915659 TTCACGTCCGCCACTCCT 60.916 61.111 0.00 0.00 0.00 3.69
2635 3289 2.432628 CTTCACGTCCGCCACTCC 60.433 66.667 0.00 0.00 0.00 3.85
2636 3290 1.444553 CTCTTCACGTCCGCCACTC 60.445 63.158 0.00 0.00 0.00 3.51
2637 3291 1.867919 CTCTCTTCACGTCCGCCACT 61.868 60.000 0.00 0.00 0.00 4.00
2638 3292 1.444553 CTCTCTTCACGTCCGCCAC 60.445 63.158 0.00 0.00 0.00 5.01
2639 3293 1.602605 TCTCTCTTCACGTCCGCCA 60.603 57.895 0.00 0.00 0.00 5.69
2640 3294 1.153997 GTCTCTCTTCACGTCCGCC 60.154 63.158 0.00 0.00 0.00 6.13
2641 3295 1.153997 GGTCTCTCTTCACGTCCGC 60.154 63.158 0.00 0.00 0.00 5.54
2642 3296 0.596577 TTGGTCTCTCTTCACGTCCG 59.403 55.000 0.00 0.00 0.00 4.79
2643 3297 2.611518 CATTGGTCTCTCTTCACGTCC 58.388 52.381 0.00 0.00 0.00 4.79
2644 3298 2.611518 CCATTGGTCTCTCTTCACGTC 58.388 52.381 0.00 0.00 0.00 4.34
2645 3299 1.276421 CCCATTGGTCTCTCTTCACGT 59.724 52.381 1.20 0.00 0.00 4.49
2646 3300 1.276421 ACCCATTGGTCTCTCTTCACG 59.724 52.381 1.20 0.00 43.06 4.35
2647 3301 3.769844 TCTACCCATTGGTCTCTCTTCAC 59.230 47.826 1.20 0.00 43.06 3.18
2648 3302 4.026744 CTCTACCCATTGGTCTCTCTTCA 58.973 47.826 1.20 0.00 43.06 3.02
2649 3303 4.098807 GTCTCTACCCATTGGTCTCTCTTC 59.901 50.000 1.20 0.00 43.06 2.87
2650 3304 4.027437 GTCTCTACCCATTGGTCTCTCTT 58.973 47.826 1.20 0.00 43.06 2.85
2651 3305 3.011821 TGTCTCTACCCATTGGTCTCTCT 59.988 47.826 1.20 0.00 43.06 3.10
2652 3306 3.366396 TGTCTCTACCCATTGGTCTCTC 58.634 50.000 1.20 0.00 43.06 3.20
2653 3307 3.474798 TGTCTCTACCCATTGGTCTCT 57.525 47.619 1.20 0.00 43.06 3.10
2654 3308 4.553330 TTTGTCTCTACCCATTGGTCTC 57.447 45.455 1.20 0.00 43.06 3.36
2655 3309 4.104102 TGTTTTGTCTCTACCCATTGGTCT 59.896 41.667 1.20 0.00 43.06 3.85
2656 3310 4.215613 GTGTTTTGTCTCTACCCATTGGTC 59.784 45.833 1.20 0.00 43.06 4.02
2658 3312 3.506067 GGTGTTTTGTCTCTACCCATTGG 59.494 47.826 0.00 0.00 37.80 3.16
2659 3313 3.188460 CGGTGTTTTGTCTCTACCCATTG 59.812 47.826 0.00 0.00 0.00 2.82
2660 3314 3.408634 CGGTGTTTTGTCTCTACCCATT 58.591 45.455 0.00 0.00 0.00 3.16
2661 3315 2.290071 CCGGTGTTTTGTCTCTACCCAT 60.290 50.000 0.00 0.00 0.00 4.00
2662 3316 1.071071 CCGGTGTTTTGTCTCTACCCA 59.929 52.381 0.00 0.00 0.00 4.51
2663 3317 1.071228 ACCGGTGTTTTGTCTCTACCC 59.929 52.381 6.12 0.00 0.00 3.69
2664 3318 2.410939 GACCGGTGTTTTGTCTCTACC 58.589 52.381 14.63 0.00 0.00 3.18
2665 3319 2.056577 CGACCGGTGTTTTGTCTCTAC 58.943 52.381 14.63 0.00 0.00 2.59
2666 3320 1.603678 GCGACCGGTGTTTTGTCTCTA 60.604 52.381 14.63 0.00 0.00 2.43
2767 3432 1.587547 GGGAGGATCAACTTGCGATC 58.412 55.000 0.00 0.00 38.86 3.69
2851 3603 4.814294 GAGGCACGCGTGGGTAGG 62.814 72.222 37.47 14.50 0.00 3.18
2877 3650 2.521224 GGGGAGGATAGGACGCGT 60.521 66.667 13.85 13.85 0.00 6.01
2960 3755 1.707316 AGGGTTTGGGAAAGGGGGT 60.707 57.895 0.00 0.00 0.00 4.95
2963 3758 1.977009 GCGAGGGTTTGGGAAAGGG 60.977 63.158 0.00 0.00 0.00 3.95
2992 3810 2.282180 CACGGTGAAGGGGTTGGG 60.282 66.667 0.74 0.00 0.00 4.12
3004 3822 0.110486 ATTTCAGCAAGGTCCACGGT 59.890 50.000 0.00 0.00 0.00 4.83
3009 3827 0.960364 TGCGGATTTCAGCAAGGTCC 60.960 55.000 2.83 0.00 43.64 4.46
3067 3885 2.233922 CGAAGTATGTGGAGTTGGAGGT 59.766 50.000 0.00 0.00 0.00 3.85
3081 3899 3.442977 AGTACGTCTTCCAAGCGAAGTAT 59.557 43.478 0.00 0.00 46.97 2.12
3152 3970 2.579657 ATGGCGTGGGAGTCAACGA 61.580 57.895 18.56 2.48 0.00 3.85
3198 4016 2.104132 CGGATGATCGTGGCGTCA 59.896 61.111 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.