Multiple sequence alignment - TraesCS6A01G052300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G052300 chr6A 100.000 4807 0 0 1 4807 27060766 27055960 0.000000e+00 8877.0
1 TraesCS6A01G052300 chr6A 88.499 913 101 4 968 1878 27007353 27006443 0.000000e+00 1101.0
2 TraesCS6A01G052300 chr6A 82.118 1275 220 8 2149 3419 27006091 27004821 0.000000e+00 1085.0
3 TraesCS6A01G052300 chr6A 88.209 899 102 3 970 1868 27105175 27104281 0.000000e+00 1070.0
4 TraesCS6A01G052300 chr6A 79.259 1350 251 24 2001 3337 27084506 27083173 0.000000e+00 915.0
5 TraesCS6A01G052300 chr6A 80.418 1195 219 14 2149 3337 27101252 27100067 0.000000e+00 896.0
6 TraesCS6A01G052300 chr6A 82.281 903 157 2 2221 3123 26966669 26967568 0.000000e+00 778.0
7 TraesCS6A01G052300 chrUn 84.779 3377 379 61 968 4282 96216550 96213247 0.000000e+00 3264.0
8 TraesCS6A01G052300 chrUn 90.315 2189 203 8 967 3152 96297180 96294998 0.000000e+00 2859.0
9 TraesCS6A01G052300 chrUn 87.476 1022 108 15 968 1974 96155072 96154056 0.000000e+00 1160.0
10 TraesCS6A01G052300 chrUn 86.315 1023 121 15 966 1974 96228916 96227899 0.000000e+00 1096.0
11 TraesCS6A01G052300 chrUn 85.403 1055 137 13 970 2013 96125209 96124161 0.000000e+00 1079.0
12 TraesCS6A01G052300 chrUn 80.064 1259 211 32 2221 3470 95770915 95772142 0.000000e+00 898.0
13 TraesCS6A01G052300 chrUn 80.440 1227 195 31 2055 3260 95987994 95989196 0.000000e+00 894.0
14 TraesCS6A01G052300 chrUn 88.591 149 13 3 4493 4637 96213074 96212926 1.370000e-40 178.0
15 TraesCS6A01G052300 chrUn 90.625 96 4 1 4652 4742 96211793 96211698 6.530000e-24 122.0
16 TraesCS6A01G052300 chrUn 92.857 42 3 0 3886 3927 96225612 96225571 1.440000e-05 62.1
17 TraesCS6A01G052300 chr6B 85.724 3089 362 36 968 4001 47091393 47088329 0.000000e+00 3188.0
18 TraesCS6A01G052300 chr6B 88.902 2514 226 18 970 3467 46925180 46922704 0.000000e+00 3048.0
19 TraesCS6A01G052300 chr6B 82.355 2539 373 46 971 3467 47139388 47136883 0.000000e+00 2137.0
20 TraesCS6A01G052300 chr6B 86.398 1066 137 7 2209 3270 47258025 47256964 0.000000e+00 1158.0
21 TraesCS6A01G052300 chr6B 81.843 1085 183 14 2209 3285 47232232 47231154 0.000000e+00 900.0
22 TraesCS6A01G052300 chr6B 91.367 139 6 3 4642 4780 47225470 47225338 8.220000e-43 185.0
23 TraesCS6A01G052300 chr6B 94.059 101 6 0 4642 4742 47087534 47087434 2.320000e-33 154.0
24 TraesCS6A01G052300 chr2B 93.918 970 53 4 1 967 159317409 159316443 0.000000e+00 1459.0
25 TraesCS6A01G052300 chr5B 92.371 970 68 4 1 968 686834513 686835478 0.000000e+00 1376.0
26 TraesCS6A01G052300 chr5B 92.171 958 69 4 13 968 686902373 686903326 0.000000e+00 1349.0
27 TraesCS6A01G052300 chr2A 92.950 922 59 4 49 968 746854546 746853629 0.000000e+00 1338.0
28 TraesCS6A01G052300 chr3A 91.538 969 68 7 1 967 47664049 47663093 0.000000e+00 1323.0
29 TraesCS6A01G052300 chr3B 91.426 968 68 5 1 966 460122914 460121960 0.000000e+00 1314.0
30 TraesCS6A01G052300 chr7A 91.134 970 66 9 1 968 62473140 62472189 0.000000e+00 1297.0
31 TraesCS6A01G052300 chr7A 93.265 876 55 2 93 968 652278886 652279757 0.000000e+00 1288.0
32 TraesCS6A01G052300 chr4A 90.422 971 86 5 2 970 662638742 662637777 0.000000e+00 1271.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G052300 chr6A 27055960 27060766 4806 True 8877.00 8877 100.000000 1 4807 1 chr6A.!!$R1 4806
1 TraesCS6A01G052300 chr6A 27004821 27007353 2532 True 1093.00 1101 85.308500 968 3419 2 chr6A.!!$R3 2451
2 TraesCS6A01G052300 chr6A 27100067 27105175 5108 True 983.00 1070 84.313500 970 3337 2 chr6A.!!$R4 2367
3 TraesCS6A01G052300 chr6A 27083173 27084506 1333 True 915.00 915 79.259000 2001 3337 1 chr6A.!!$R2 1336
4 TraesCS6A01G052300 chr6A 26966669 26967568 899 False 778.00 778 82.281000 2221 3123 1 chr6A.!!$F1 902
5 TraesCS6A01G052300 chrUn 96294998 96297180 2182 True 2859.00 2859 90.315000 967 3152 1 chrUn.!!$R3 2185
6 TraesCS6A01G052300 chrUn 96211698 96216550 4852 True 1188.00 3264 87.998333 968 4742 3 chrUn.!!$R4 3774
7 TraesCS6A01G052300 chrUn 96154056 96155072 1016 True 1160.00 1160 87.476000 968 1974 1 chrUn.!!$R2 1006
8 TraesCS6A01G052300 chrUn 96124161 96125209 1048 True 1079.00 1079 85.403000 970 2013 1 chrUn.!!$R1 1043
9 TraesCS6A01G052300 chrUn 95770915 95772142 1227 False 898.00 898 80.064000 2221 3470 1 chrUn.!!$F1 1249
10 TraesCS6A01G052300 chrUn 95987994 95989196 1202 False 894.00 894 80.440000 2055 3260 1 chrUn.!!$F2 1205
11 TraesCS6A01G052300 chrUn 96225571 96228916 3345 True 579.05 1096 89.586000 966 3927 2 chrUn.!!$R5 2961
12 TraesCS6A01G052300 chr6B 46922704 46925180 2476 True 3048.00 3048 88.902000 970 3467 1 chr6B.!!$R1 2497
13 TraesCS6A01G052300 chr6B 47136883 47139388 2505 True 2137.00 2137 82.355000 971 3467 1 chr6B.!!$R2 2496
14 TraesCS6A01G052300 chr6B 47087434 47091393 3959 True 1671.00 3188 89.891500 968 4742 2 chr6B.!!$R6 3774
15 TraesCS6A01G052300 chr6B 47256964 47258025 1061 True 1158.00 1158 86.398000 2209 3270 1 chr6B.!!$R5 1061
16 TraesCS6A01G052300 chr6B 47231154 47232232 1078 True 900.00 900 81.843000 2209 3285 1 chr6B.!!$R4 1076
17 TraesCS6A01G052300 chr2B 159316443 159317409 966 True 1459.00 1459 93.918000 1 967 1 chr2B.!!$R1 966
18 TraesCS6A01G052300 chr5B 686834513 686835478 965 False 1376.00 1376 92.371000 1 968 1 chr5B.!!$F1 967
19 TraesCS6A01G052300 chr5B 686902373 686903326 953 False 1349.00 1349 92.171000 13 968 1 chr5B.!!$F2 955
20 TraesCS6A01G052300 chr2A 746853629 746854546 917 True 1338.00 1338 92.950000 49 968 1 chr2A.!!$R1 919
21 TraesCS6A01G052300 chr3A 47663093 47664049 956 True 1323.00 1323 91.538000 1 967 1 chr3A.!!$R1 966
22 TraesCS6A01G052300 chr3B 460121960 460122914 954 True 1314.00 1314 91.426000 1 966 1 chr3B.!!$R1 965
23 TraesCS6A01G052300 chr7A 62472189 62473140 951 True 1297.00 1297 91.134000 1 968 1 chr7A.!!$R1 967
24 TraesCS6A01G052300 chr7A 652278886 652279757 871 False 1288.00 1288 93.265000 93 968 1 chr7A.!!$F1 875
25 TraesCS6A01G052300 chr4A 662637777 662638742 965 True 1271.00 1271 90.422000 2 970 1 chr4A.!!$R1 968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 576 0.320697 AGGTTCTAGGGTGAACACGC 59.679 55.000 12.85 12.85 45.74 5.34 F
579 590 0.321210 ACACGCCCATCATTCAACGA 60.321 50.000 0.00 0.00 0.00 3.85 F
845 859 1.295423 GGCGCCTCTGTACCTTTCA 59.705 57.895 22.15 0.00 0.00 2.69 F
2100 4889 1.353103 GGCGAGTCCATCATTTGCG 59.647 57.895 0.00 0.00 34.01 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1659 0.966179 TGGAAACGAGCAGTGCTAGA 59.034 50.000 29.01 5.89 39.88 2.43 R
2251 5115 2.730404 CTCAAATCGATCTGCATCCTCG 59.270 50.000 0.00 6.41 0.00 4.63 R
2816 5681 1.288127 CTGCAACCTTCAGCTTGCC 59.712 57.895 3.48 0.00 41.83 4.52 R
3819 6901 0.036010 ACCTCCATTCCAGCAGAACG 60.036 55.000 0.00 0.00 37.29 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
313 320 4.196971 GGTTAACACCTCAACTCTGTTGT 58.803 43.478 8.10 0.00 40.44 3.32
315 322 5.995897 GGTTAACACCTCAACTCTGTTGTAT 59.004 40.000 8.10 0.00 40.44 2.29
357 364 1.464997 GTAACCTTCTTGAAGGCGCTG 59.535 52.381 24.58 5.85 43.80 5.18
452 462 1.474478 CTCTTTCGTGCCAGAGCTCTA 59.526 52.381 17.75 0.00 40.80 2.43
483 494 3.477530 GTTTGGTTGCTCTAGGTGAGTT 58.522 45.455 0.00 0.00 44.41 3.01
563 574 4.141914 CCATCTAGGTTCTAGGGTGAACAC 60.142 50.000 9.18 0.00 45.74 3.32
565 576 0.320697 AGGTTCTAGGGTGAACACGC 59.679 55.000 12.85 12.85 45.74 5.34
579 590 0.321210 ACACGCCCATCATTCAACGA 60.321 50.000 0.00 0.00 0.00 3.85
695 709 1.537990 GGCATGCCTTGTTTTGTCGTT 60.538 47.619 29.98 0.00 0.00 3.85
808 822 8.749354 TCTTATCTCTAGCTTGTTGTATGTGAA 58.251 33.333 0.00 0.00 0.00 3.18
821 835 4.388485 TGTATGTGAACATTGTGAGCTGT 58.612 39.130 0.47 0.00 37.76 4.40
822 836 4.452114 TGTATGTGAACATTGTGAGCTGTC 59.548 41.667 0.47 0.00 37.76 3.51
845 859 1.295423 GGCGCCTCTGTACCTTTCA 59.705 57.895 22.15 0.00 0.00 2.69
869 884 8.298140 TCACCGTTTTTCTGTTCTTTTTCTTTA 58.702 29.630 0.00 0.00 0.00 1.85
871 886 9.083080 ACCGTTTTTCTGTTCTTTTTCTTTATG 57.917 29.630 0.00 0.00 0.00 1.90
899 914 5.163468 TGTGTGGTTGTAATCTTGCATTGTT 60.163 36.000 0.00 0.00 0.00 2.83
1180 1195 6.384015 TGAATTCATACAGTCCTACCATCACT 59.616 38.462 3.38 0.00 0.00 3.41
1183 1198 4.820173 TCATACAGTCCTACCATCACTACG 59.180 45.833 0.00 0.00 0.00 3.51
1230 1245 4.285292 CTGCATTTCCGAGATTGCATAAC 58.715 43.478 10.31 0.00 43.51 1.89
1240 1255 7.864686 TCCGAGATTGCATAACATGAATTTAG 58.135 34.615 0.00 0.00 0.00 1.85
1242 1257 7.588854 CCGAGATTGCATAACATGAATTTAGTG 59.411 37.037 0.00 0.00 0.00 2.74
1344 1359 3.858503 GCTGCAAATTGAAGTGTCTTCCC 60.859 47.826 2.52 0.00 0.00 3.97
1385 1400 6.480981 CAGGCAAGGGCTTTGAATAAATTATG 59.519 38.462 14.11 0.00 39.21 1.90
1487 1502 6.142498 ACCTGGAGATGATCACTAATCTTCT 58.858 40.000 0.00 0.00 46.31 2.85
1543 1558 1.455849 CTGAAGGTGTTGGAGGGCA 59.544 57.895 0.00 0.00 0.00 5.36
1620 1635 8.615926 CCAAAATACATGGGAGGTATAAACCCC 61.616 44.444 0.00 0.00 42.65 4.95
1995 4764 8.458843 GGACAACAATAACATGCTAGTAATGTT 58.541 33.333 21.79 21.79 46.98 2.71
2100 4889 1.353103 GGCGAGTCCATCATTTGCG 59.647 57.895 0.00 0.00 34.01 4.85
2132 4983 5.104859 TGTTGTTCACACTTGTTCCCTACTA 60.105 40.000 0.00 0.00 0.00 1.82
2139 4994 6.152323 TCACACTTGTTCCCTACTACTCATAC 59.848 42.308 0.00 0.00 0.00 2.39
2158 5017 7.489435 ACTCATACGTTATTTCATCTCACTGTG 59.511 37.037 0.17 0.17 0.00 3.66
2251 5115 3.751518 TGCAGGAACCTTAACCTCTTTC 58.248 45.455 0.00 0.00 33.91 2.62
2288 5152 8.322906 TCGATTTGAGTATGTCTTCAAAATGT 57.677 30.769 4.06 0.00 35.98 2.71
2343 5207 4.160252 GGTTTATGTGCCATCATTGGAAGT 59.840 41.667 0.00 0.00 46.92 3.01
2437 5302 2.826725 GTTGTACTCTAGTGAGCCACCT 59.173 50.000 0.00 0.00 43.85 4.00
2803 5668 2.435059 GAGTGCGAGAAGGGTGCC 60.435 66.667 0.00 0.00 0.00 5.01
2860 5725 3.587498 TGGATCAGAAGTCGGGGAATAT 58.413 45.455 0.00 0.00 0.00 1.28
2864 5729 6.607600 TGGATCAGAAGTCGGGGAATATATAG 59.392 42.308 0.00 0.00 0.00 1.31
3048 5913 2.430921 GACGTCGTGCCCTGTCAG 60.431 66.667 0.63 0.00 0.00 3.51
3154 6028 0.249911 GCGTTGAGGAGCCGGATTAT 60.250 55.000 5.05 0.00 0.00 1.28
3216 6090 1.202698 GGCGAGGGATATGCTTTCACT 60.203 52.381 0.00 0.00 0.00 3.41
3228 6102 7.334421 GGATATGCTTTCACTGTACTTCTTGAA 59.666 37.037 0.00 0.00 0.00 2.69
3229 6103 6.942532 ATGCTTTCACTGTACTTCTTGAAA 57.057 33.333 0.00 3.48 36.70 2.69
3231 6105 7.333528 TGCTTTCACTGTACTTCTTGAAAAT 57.666 32.000 10.72 0.00 37.48 1.82
3249 6123 5.882000 TGAAAATCATGTCATCCGAATCAGT 59.118 36.000 0.00 0.00 0.00 3.41
3270 6144 4.760204 AGTAGGTGAATTAACACAACTGCC 59.240 41.667 10.36 3.24 41.88 4.85
3285 6160 5.652014 CACAACTGCCCCTCATCTTAATTTA 59.348 40.000 0.00 0.00 0.00 1.40
3346 6221 2.820197 GTCCTCTTGTTGTTTCCATCCC 59.180 50.000 0.00 0.00 0.00 3.85
3356 6235 5.222027 TGTTGTTTCCATCCCTCATCTGTTA 60.222 40.000 0.00 0.00 0.00 2.41
3365 6244 2.290896 CCCTCATCTGTTAAGTTGGCCA 60.291 50.000 0.00 0.00 0.00 5.36
3368 6259 2.375174 TCATCTGTTAAGTTGGCCAGGT 59.625 45.455 5.11 0.00 0.00 4.00
3372 6263 1.427368 TGTTAAGTTGGCCAGGTGGAT 59.573 47.619 5.11 0.00 37.39 3.41
3373 6264 2.645297 TGTTAAGTTGGCCAGGTGGATA 59.355 45.455 5.11 0.00 37.39 2.59
3374 6265 3.268334 TGTTAAGTTGGCCAGGTGGATAT 59.732 43.478 5.11 0.00 37.39 1.63
3375 6266 2.442236 AAGTTGGCCAGGTGGATATG 57.558 50.000 5.11 0.00 37.39 1.78
3376 6267 0.552848 AGTTGGCCAGGTGGATATGG 59.447 55.000 5.11 0.00 39.73 2.74
3377 6268 0.550914 GTTGGCCAGGTGGATATGGA 59.449 55.000 5.11 0.00 39.02 3.41
3378 6269 0.846015 TTGGCCAGGTGGATATGGAG 59.154 55.000 5.11 0.00 39.02 3.86
3379 6270 0.030195 TGGCCAGGTGGATATGGAGA 60.030 55.000 0.00 0.00 39.02 3.71
3380 6271 1.140312 GGCCAGGTGGATATGGAGAA 58.860 55.000 0.00 0.00 39.02 2.87
3381 6272 1.202818 GGCCAGGTGGATATGGAGAAC 60.203 57.143 0.00 0.00 39.02 3.01
3382 6273 1.541233 GCCAGGTGGATATGGAGAACG 60.541 57.143 0.00 0.00 39.02 3.95
3383 6274 2.039418 CCAGGTGGATATGGAGAACGA 58.961 52.381 0.00 0.00 39.02 3.85
3427 6318 2.005451 CAGGCGATGAAGACAAGGAAG 58.995 52.381 0.00 0.00 0.00 3.46
3472 6363 4.864726 TCAGAGGAAGAGAGACATGATGA 58.135 43.478 0.00 0.00 0.00 2.92
3479 6370 4.940905 AGAGAGACATGATGATGACCAG 57.059 45.455 0.00 0.00 33.36 4.00
3484 6375 5.842874 AGAGACATGATGATGACCAGGATAA 59.157 40.000 0.00 0.00 33.36 1.75
3490 6381 8.388589 ACATGATGATGACCAGGATAACATTAT 58.611 33.333 0.00 0.00 33.36 1.28
3521 6417 7.472334 AATATTTCTTTCTGCCACATCTTGT 57.528 32.000 0.00 0.00 0.00 3.16
3532 6428 3.939592 GCCACATCTTGTTTCTAGGTACC 59.060 47.826 2.73 2.73 0.00 3.34
3535 6431 5.512404 CCACATCTTGTTTCTAGGTACCACA 60.512 44.000 15.94 6.27 0.00 4.17
3540 6436 5.720041 TCTTGTTTCTAGGTACCACAGCTAT 59.280 40.000 15.94 0.00 36.66 2.97
3543 6439 5.661312 TGTTTCTAGGTACCACAGCTATCAT 59.339 40.000 15.94 0.00 36.66 2.45
3559 6455 4.808364 GCTATCATTCTCTGCTTCGAGTTT 59.192 41.667 0.00 0.00 32.83 2.66
3593 6553 6.219473 AGCAATAATATCACAGTTCTCTCCG 58.781 40.000 0.00 0.00 0.00 4.63
3598 6558 0.959553 TCACAGTTCTCTCCGTGGTC 59.040 55.000 0.00 0.00 0.00 4.02
3609 6569 2.169769 TCTCCGTGGTCTGTTCTTTTGT 59.830 45.455 0.00 0.00 0.00 2.83
3684 6713 8.409358 TGATAATCTCATGTATTTCCTCTCGA 57.591 34.615 0.00 0.00 0.00 4.04
3687 6716 6.907853 ATCTCATGTATTTCCTCTCGATCA 57.092 37.500 0.00 0.00 0.00 2.92
3689 6718 8.586879 ATCTCATGTATTTCCTCTCGATCATA 57.413 34.615 0.00 0.00 0.00 2.15
3704 6733 3.486375 CGATCATACTGGCAACTGCTTTG 60.486 47.826 1.06 0.00 41.70 2.77
3709 6738 3.375782 ACTGGCAACTGCTTTGAAATC 57.624 42.857 1.06 0.00 41.70 2.17
3734 6815 4.253685 TGCTTCATTTAGTAGACTGGTGC 58.746 43.478 0.00 0.00 0.00 5.01
3804 6886 6.484288 TGAAACCTTTATGTGATCAGATGGT 58.516 36.000 15.31 10.97 0.00 3.55
3809 6891 5.513788 CCTTTATGTGATCAGATGGTAGGGG 60.514 48.000 15.31 5.46 0.00 4.79
3819 6901 1.349357 GATGGTAGGGGAGCCTTCATC 59.651 57.143 0.00 0.00 0.00 2.92
3837 6919 0.250234 TCGTTCTGCTGGAATGGAGG 59.750 55.000 10.62 0.00 40.37 4.30
3838 6920 0.036010 CGTTCTGCTGGAATGGAGGT 60.036 55.000 4.90 0.00 37.31 3.85
4002 7091 8.248253 TGTGTAGTCTGTACTTTATGTATGTGG 58.752 37.037 0.00 0.00 37.15 4.17
4010 7099 7.842982 TGTACTTTATGTATGTGGAGTAAGCA 58.157 34.615 0.00 0.00 33.23 3.91
4030 7119 9.000018 GTAAGCATTTTATGTGTCGAGAAAATC 58.000 33.333 0.00 0.00 30.91 2.17
4031 7120 7.144722 AGCATTTTATGTGTCGAGAAAATCA 57.855 32.000 0.00 0.00 30.91 2.57
4032 7121 7.023575 AGCATTTTATGTGTCGAGAAAATCAC 58.976 34.615 0.00 0.00 30.91 3.06
4033 7122 6.022251 GCATTTTATGTGTCGAGAAAATCACG 60.022 38.462 0.00 0.00 30.91 4.35
4034 7123 6.772770 TTTTATGTGTCGAGAAAATCACGA 57.227 33.333 0.00 0.00 37.16 4.35
4037 7126 3.832730 GTCGAGAAAATCACGACGC 57.167 52.632 12.99 0.00 46.62 5.19
4038 7127 1.057636 GTCGAGAAAATCACGACGCA 58.942 50.000 12.99 0.00 46.62 5.24
4039 7128 1.654105 GTCGAGAAAATCACGACGCAT 59.346 47.619 12.99 0.00 46.62 4.73
4040 7129 2.850060 GTCGAGAAAATCACGACGCATA 59.150 45.455 12.99 0.00 46.62 3.14
4041 7130 2.850060 TCGAGAAAATCACGACGCATAC 59.150 45.455 0.00 0.00 34.75 2.39
4042 7131 2.596862 CGAGAAAATCACGACGCATACA 59.403 45.455 0.00 0.00 32.24 2.29
4043 7132 3.301197 CGAGAAAATCACGACGCATACAG 60.301 47.826 0.00 0.00 32.24 2.74
4044 7133 2.348666 AGAAAATCACGACGCATACAGC 59.651 45.455 0.00 0.00 40.87 4.40
4069 7158 3.006323 AGCCGCTAAGGAGATTATCTGTG 59.994 47.826 0.00 0.00 45.00 3.66
4070 7159 3.321497 CCGCTAAGGAGATTATCTGTGC 58.679 50.000 0.00 0.00 45.00 4.57
4080 7169 5.371526 GAGATTATCTGTGCTTTCCATCCA 58.628 41.667 0.00 0.00 0.00 3.41
4104 7193 2.107204 AGTTGGGTGCAGACTGAAGAAT 59.893 45.455 6.65 0.00 0.00 2.40
4120 7209 7.715657 ACTGAAGAATTTGCAAACATAACAGA 58.284 30.769 27.78 4.76 0.00 3.41
4128 7217 2.897326 GCAAACATAACAGAAGGGGGTT 59.103 45.455 0.00 0.00 0.00 4.11
4149 7238 1.240641 CCGTGTGTTAATGGCAGGCA 61.241 55.000 0.00 0.00 0.00 4.75
4163 7252 1.885887 GCAGGCATTCTTGTGTGGTAA 59.114 47.619 0.00 0.00 0.00 2.85
4166 7255 2.552315 AGGCATTCTTGTGTGGTAAACG 59.448 45.455 0.00 0.00 0.00 3.60
4170 7259 4.496673 GCATTCTTGTGTGGTAAACGTGAA 60.497 41.667 0.00 0.00 0.00 3.18
4171 7260 4.868450 TTCTTGTGTGGTAAACGTGAAG 57.132 40.909 0.00 0.00 0.00 3.02
4173 7262 1.301423 TGTGTGGTAAACGTGAAGGC 58.699 50.000 0.00 0.00 0.00 4.35
4176 7265 0.237498 GTGGTAAACGTGAAGGCAGC 59.763 55.000 0.00 0.00 0.00 5.25
4177 7266 0.107831 TGGTAAACGTGAAGGCAGCT 59.892 50.000 0.00 0.00 0.00 4.24
4179 7268 1.730612 GGTAAACGTGAAGGCAGCTAC 59.269 52.381 0.00 0.00 0.00 3.58
4180 7269 2.612221 GGTAAACGTGAAGGCAGCTACT 60.612 50.000 0.00 0.00 0.00 2.57
4181 7270 1.512926 AAACGTGAAGGCAGCTACTG 58.487 50.000 0.00 0.00 34.12 2.74
4182 7271 0.393077 AACGTGAAGGCAGCTACTGT 59.607 50.000 0.00 0.00 33.43 3.55
4183 7272 1.254026 ACGTGAAGGCAGCTACTGTA 58.746 50.000 0.00 0.00 33.43 2.74
4184 7273 1.202582 ACGTGAAGGCAGCTACTGTAG 59.797 52.381 10.48 10.48 33.43 2.74
4185 7274 1.472878 CGTGAAGGCAGCTACTGTAGA 59.527 52.381 18.64 0.00 33.43 2.59
4186 7275 2.094700 CGTGAAGGCAGCTACTGTAGAA 60.095 50.000 18.64 0.00 33.43 2.10
4187 7276 3.614150 CGTGAAGGCAGCTACTGTAGAAA 60.614 47.826 18.64 0.00 33.43 2.52
4188 7277 3.680458 GTGAAGGCAGCTACTGTAGAAAC 59.320 47.826 18.64 6.02 33.43 2.78
4189 7278 3.323691 TGAAGGCAGCTACTGTAGAAACA 59.676 43.478 18.64 5.41 33.43 2.83
4220 7309 2.853281 GCCTCGAGTTTGTTTCGTTTGG 60.853 50.000 12.31 0.00 39.05 3.28
4226 7315 5.524646 TCGAGTTTGTTTCGTTTGGTTATCT 59.475 36.000 0.00 0.00 39.05 1.98
4230 7319 7.712797 AGTTTGTTTCGTTTGGTTATCTTCAT 58.287 30.769 0.00 0.00 0.00 2.57
4240 7329 8.540492 CGTTTGGTTATCTTCATCAGTATACAC 58.460 37.037 5.50 0.00 0.00 2.90
4251 7340 9.600646 CTTCATCAGTATACACTACACGAATAG 57.399 37.037 5.50 0.00 32.21 1.73
4256 7345 7.281549 TCAGTATACACTACACGAATAGAAGCA 59.718 37.037 5.50 0.00 32.21 3.91
4257 7346 8.076781 CAGTATACACTACACGAATAGAAGCAT 58.923 37.037 5.50 0.00 32.21 3.79
4258 7347 8.076781 AGTATACACTACACGAATAGAAGCATG 58.923 37.037 5.50 0.00 31.45 4.06
4261 7350 4.268644 CACTACACGAATAGAAGCATGTGG 59.731 45.833 0.00 0.00 0.00 4.17
4262 7351 2.009774 ACACGAATAGAAGCATGTGGC 58.990 47.619 0.00 0.00 45.30 5.01
4283 7372 1.153784 CATGTCCCAAATGCACCGC 60.154 57.895 0.00 0.00 0.00 5.68
4286 7375 1.365633 GTCCCAAATGCACCGCAAA 59.634 52.632 0.00 0.00 43.62 3.68
4287 7376 0.037419 GTCCCAAATGCACCGCAAAT 60.037 50.000 0.00 0.00 43.62 2.32
4290 7379 1.020333 CCAAATGCACCGCAAATGGG 61.020 55.000 12.94 1.13 43.62 4.00
4291 7380 0.037512 CAAATGCACCGCAAATGGGA 60.038 50.000 0.00 0.00 43.62 4.37
4292 7381 0.683973 AAATGCACCGCAAATGGGAA 59.316 45.000 0.00 0.00 43.62 3.97
4293 7382 0.683973 AATGCACCGCAAATGGGAAA 59.316 45.000 0.00 0.00 43.62 3.13
4294 7383 0.903942 ATGCACCGCAAATGGGAAAT 59.096 45.000 0.00 0.00 43.62 2.17
4295 7384 1.550327 TGCACCGCAAATGGGAAATA 58.450 45.000 0.00 0.00 34.76 1.40
4296 7385 1.203523 TGCACCGCAAATGGGAAATAC 59.796 47.619 0.00 0.00 34.76 1.89
4298 7387 0.454196 ACCGCAAATGGGAAATACGC 59.546 50.000 0.00 0.00 0.00 4.42
4299 7388 0.453793 CCGCAAATGGGAAATACGCA 59.546 50.000 0.00 0.00 45.06 5.24
4300 7389 1.135257 CCGCAAATGGGAAATACGCAA 60.135 47.619 0.00 0.00 44.22 4.85
4301 7390 2.481104 CCGCAAATGGGAAATACGCAAT 60.481 45.455 0.00 0.00 44.22 3.56
4302 7391 3.186119 CGCAAATGGGAAATACGCAATT 58.814 40.909 0.00 0.00 44.22 2.32
4303 7392 4.355437 CGCAAATGGGAAATACGCAATTA 58.645 39.130 0.00 0.00 44.22 1.40
4304 7393 4.206200 CGCAAATGGGAAATACGCAATTAC 59.794 41.667 0.00 0.00 44.22 1.89
4305 7394 4.206200 GCAAATGGGAAATACGCAATTACG 59.794 41.667 0.00 0.00 44.22 3.18
4306 7395 3.619233 ATGGGAAATACGCAATTACGC 57.381 42.857 0.00 0.00 44.22 4.42
4307 7396 2.357075 TGGGAAATACGCAATTACGCA 58.643 42.857 0.00 0.00 38.47 5.24
4308 7397 2.946329 TGGGAAATACGCAATTACGCAT 59.054 40.909 0.00 0.00 38.47 4.73
4309 7398 3.242903 TGGGAAATACGCAATTACGCATG 60.243 43.478 0.00 0.00 38.47 4.06
4310 7399 3.002862 GGGAAATACGCAATTACGCATGA 59.997 43.478 0.00 0.00 36.19 3.07
4311 7400 4.211389 GGAAATACGCAATTACGCATGAG 58.789 43.478 0.00 0.00 36.19 2.90
4312 7401 2.949714 ATACGCAATTACGCATGAGC 57.050 45.000 0.00 0.00 36.19 4.26
4313 7402 1.934589 TACGCAATTACGCATGAGCT 58.065 45.000 0.00 0.00 39.10 4.09
4314 7403 1.086696 ACGCAATTACGCATGAGCTT 58.913 45.000 0.00 0.00 39.10 3.74
4315 7404 2.276201 ACGCAATTACGCATGAGCTTA 58.724 42.857 0.00 0.00 39.10 3.09
4316 7405 2.872245 ACGCAATTACGCATGAGCTTAT 59.128 40.909 0.00 0.00 39.10 1.73
4317 7406 3.059597 ACGCAATTACGCATGAGCTTATC 60.060 43.478 0.00 0.00 39.10 1.75
4318 7407 3.059665 CGCAATTACGCATGAGCTTATCA 60.060 43.478 0.00 0.00 43.70 2.15
4319 7408 4.552572 CGCAATTACGCATGAGCTTATCAA 60.553 41.667 0.00 0.00 42.53 2.57
4320 7409 5.455392 GCAATTACGCATGAGCTTATCAAT 58.545 37.500 0.00 0.00 42.53 2.57
4321 7410 5.341462 GCAATTACGCATGAGCTTATCAATG 59.659 40.000 0.00 0.00 42.53 2.82
4322 7411 6.432936 CAATTACGCATGAGCTTATCAATGT 58.567 36.000 0.00 0.00 42.53 2.71
4323 7412 3.957671 ACGCATGAGCTTATCAATGTG 57.042 42.857 0.00 0.00 42.53 3.21
4324 7413 3.273434 ACGCATGAGCTTATCAATGTGT 58.727 40.909 0.00 0.00 42.53 3.72
4325 7414 3.064408 ACGCATGAGCTTATCAATGTGTG 59.936 43.478 0.00 1.18 42.53 3.82
4326 7415 3.369385 GCATGAGCTTATCAATGTGTGC 58.631 45.455 0.00 0.00 42.53 4.57
4327 7416 3.066342 GCATGAGCTTATCAATGTGTGCT 59.934 43.478 0.00 0.00 42.53 4.40
4328 7417 4.788840 GCATGAGCTTATCAATGTGTGCTC 60.789 45.833 0.00 0.00 42.53 4.26
4329 7418 3.273434 TGAGCTTATCAATGTGTGCTCC 58.727 45.455 9.77 0.00 44.16 4.70
4330 7419 2.615912 GAGCTTATCAATGTGTGCTCCC 59.384 50.000 0.00 0.00 40.44 4.30
4331 7420 2.025981 AGCTTATCAATGTGTGCTCCCA 60.026 45.455 0.00 0.00 0.00 4.37
4332 7421 2.098117 GCTTATCAATGTGTGCTCCCAC 59.902 50.000 0.00 0.00 42.40 4.61
4333 7422 2.022764 TATCAATGTGTGCTCCCACG 57.977 50.000 0.00 0.00 45.04 4.94
4334 7423 0.324614 ATCAATGTGTGCTCCCACGA 59.675 50.000 0.00 0.00 45.04 4.35
4335 7424 0.324614 TCAATGTGTGCTCCCACGAT 59.675 50.000 0.00 0.00 45.04 3.73
4336 7425 0.729116 CAATGTGTGCTCCCACGATC 59.271 55.000 0.00 0.00 45.04 3.69
4337 7426 0.392998 AATGTGTGCTCCCACGATCC 60.393 55.000 0.00 0.00 45.04 3.36
4338 7427 1.552799 ATGTGTGCTCCCACGATCCA 61.553 55.000 0.00 0.00 45.04 3.41
4339 7428 1.221840 GTGTGCTCCCACGATCCAT 59.778 57.895 0.00 0.00 45.04 3.41
4340 7429 1.091771 GTGTGCTCCCACGATCCATG 61.092 60.000 0.00 0.00 45.04 3.66
4341 7430 1.264045 TGTGCTCCCACGATCCATGA 61.264 55.000 0.00 0.00 45.04 3.07
4342 7431 0.107456 GTGCTCCCACGATCCATGAT 59.893 55.000 0.00 0.00 31.34 2.45
4343 7432 0.394192 TGCTCCCACGATCCATGATC 59.606 55.000 0.00 0.00 35.88 2.92
4344 7433 0.683973 GCTCCCACGATCCATGATCT 59.316 55.000 0.00 0.00 36.96 2.75
4345 7434 1.895798 GCTCCCACGATCCATGATCTA 59.104 52.381 0.00 0.00 36.96 1.98
4346 7435 2.499289 GCTCCCACGATCCATGATCTAT 59.501 50.000 0.00 0.00 36.96 1.98
4347 7436 3.678252 GCTCCCACGATCCATGATCTATG 60.678 52.174 0.00 0.00 36.96 2.23
4348 7437 3.766051 CTCCCACGATCCATGATCTATGA 59.234 47.826 0.00 0.00 39.21 2.15
4349 7438 4.159557 TCCCACGATCCATGATCTATGAA 58.840 43.478 0.00 0.00 39.21 2.57
4350 7439 4.021104 TCCCACGATCCATGATCTATGAAC 60.021 45.833 0.00 0.00 39.21 3.18
4351 7440 4.262592 CCCACGATCCATGATCTATGAACA 60.263 45.833 0.00 0.00 39.21 3.18
4352 7441 4.928020 CCACGATCCATGATCTATGAACAG 59.072 45.833 0.00 0.72 39.21 3.16
4353 7442 4.388165 CACGATCCATGATCTATGAACAGC 59.612 45.833 0.00 0.00 39.21 4.40
4354 7443 4.282957 ACGATCCATGATCTATGAACAGCT 59.717 41.667 0.00 0.00 39.21 4.24
4355 7444 4.626172 CGATCCATGATCTATGAACAGCTG 59.374 45.833 13.48 13.48 39.21 4.24
4356 7445 4.347360 TCCATGATCTATGAACAGCTGG 57.653 45.455 19.93 0.00 39.21 4.85
4357 7446 3.072038 TCCATGATCTATGAACAGCTGGG 59.928 47.826 19.93 4.53 39.21 4.45
4358 7447 3.072038 CCATGATCTATGAACAGCTGGGA 59.928 47.826 19.93 6.46 39.21 4.37
4359 7448 4.445305 CCATGATCTATGAACAGCTGGGAA 60.445 45.833 19.93 2.49 39.21 3.97
4360 7449 4.412796 TGATCTATGAACAGCTGGGAAG 57.587 45.455 19.93 7.97 0.00 3.46
4361 7450 4.033009 TGATCTATGAACAGCTGGGAAGA 58.967 43.478 19.93 13.00 0.00 2.87
4362 7451 4.471025 TGATCTATGAACAGCTGGGAAGAA 59.529 41.667 19.93 0.00 0.00 2.52
4363 7452 4.478206 TCTATGAACAGCTGGGAAGAAG 57.522 45.455 19.93 8.17 0.00 2.85
4364 7453 2.503895 ATGAACAGCTGGGAAGAAGG 57.496 50.000 19.93 0.00 0.00 3.46
4365 7454 1.140312 TGAACAGCTGGGAAGAAGGT 58.860 50.000 19.93 0.00 0.00 3.50
4366 7455 1.494721 TGAACAGCTGGGAAGAAGGTT 59.505 47.619 19.93 0.00 0.00 3.50
4367 7456 2.155279 GAACAGCTGGGAAGAAGGTTC 58.845 52.381 19.93 5.42 0.00 3.62
4368 7457 1.439543 ACAGCTGGGAAGAAGGTTCT 58.560 50.000 19.93 0.00 39.74 3.01
4369 7458 1.072965 ACAGCTGGGAAGAAGGTTCTG 59.927 52.381 19.93 0.00 37.65 3.02
4370 7459 1.072965 CAGCTGGGAAGAAGGTTCTGT 59.927 52.381 5.57 0.00 37.65 3.41
4371 7460 1.777272 AGCTGGGAAGAAGGTTCTGTT 59.223 47.619 0.00 0.00 37.65 3.16
4372 7461 2.175715 AGCTGGGAAGAAGGTTCTGTTT 59.824 45.455 0.00 0.00 37.65 2.83
4373 7462 2.554462 GCTGGGAAGAAGGTTCTGTTTC 59.446 50.000 0.00 0.00 37.65 2.78
4374 7463 3.149981 CTGGGAAGAAGGTTCTGTTTCC 58.850 50.000 0.00 0.00 37.65 3.13
4375 7464 2.783510 TGGGAAGAAGGTTCTGTTTCCT 59.216 45.455 8.27 0.00 37.65 3.36
4376 7465 3.977999 TGGGAAGAAGGTTCTGTTTCCTA 59.022 43.478 8.27 1.38 37.65 2.94
4377 7466 4.202430 TGGGAAGAAGGTTCTGTTTCCTAC 60.202 45.833 8.27 0.00 37.65 3.18
4378 7467 4.041815 GGGAAGAAGGTTCTGTTTCCTACT 59.958 45.833 8.27 0.00 37.65 2.57
4379 7468 4.998033 GGAAGAAGGTTCTGTTTCCTACTG 59.002 45.833 0.00 0.00 37.65 2.74
4380 7469 5.221661 GGAAGAAGGTTCTGTTTCCTACTGA 60.222 44.000 0.00 0.00 37.65 3.41
4381 7470 5.216614 AGAAGGTTCTGTTTCCTACTGAC 57.783 43.478 0.00 0.00 35.89 3.51
4382 7471 4.654262 AGAAGGTTCTGTTTCCTACTGACA 59.346 41.667 0.00 0.00 35.89 3.58
4383 7472 4.338379 AGGTTCTGTTTCCTACTGACAC 57.662 45.455 0.00 0.00 34.84 3.67
4384 7473 3.967987 AGGTTCTGTTTCCTACTGACACT 59.032 43.478 0.00 0.00 34.84 3.55
4385 7474 4.058817 GGTTCTGTTTCCTACTGACACTG 58.941 47.826 0.00 0.00 34.84 3.66
4386 7475 4.202223 GGTTCTGTTTCCTACTGACACTGA 60.202 45.833 0.00 0.00 34.84 3.41
4387 7476 4.855715 TCTGTTTCCTACTGACACTGAG 57.144 45.455 0.00 0.00 30.82 3.35
4388 7477 3.005897 TCTGTTTCCTACTGACACTGAGC 59.994 47.826 0.00 0.00 30.82 4.26
4389 7478 2.965831 TGTTTCCTACTGACACTGAGCT 59.034 45.455 0.00 0.00 0.00 4.09
4390 7479 3.243873 TGTTTCCTACTGACACTGAGCTG 60.244 47.826 0.00 0.00 0.00 4.24
4391 7480 0.891373 TCCTACTGACACTGAGCTGC 59.109 55.000 0.00 0.00 0.00 5.25
4392 7481 0.605083 CCTACTGACACTGAGCTGCA 59.395 55.000 1.02 0.00 0.00 4.41
4402 7491 3.849002 TGAGCTGCAGACATCCTTC 57.151 52.632 20.43 2.92 0.00 3.46
4403 7492 0.978907 TGAGCTGCAGACATCCTTCA 59.021 50.000 20.43 5.51 0.00 3.02
4404 7493 1.558294 TGAGCTGCAGACATCCTTCAT 59.442 47.619 20.43 0.00 0.00 2.57
4405 7494 2.211806 GAGCTGCAGACATCCTTCATC 58.788 52.381 20.43 0.00 0.00 2.92
4406 7495 1.838715 AGCTGCAGACATCCTTCATCT 59.161 47.619 20.43 0.00 0.00 2.90
4407 7496 1.941294 GCTGCAGACATCCTTCATCTG 59.059 52.381 20.43 0.00 42.33 2.90
4408 7497 2.680221 GCTGCAGACATCCTTCATCTGT 60.680 50.000 20.43 0.00 41.62 3.41
4409 7498 3.607741 CTGCAGACATCCTTCATCTGTT 58.392 45.455 8.42 0.00 41.62 3.16
4410 7499 4.008330 CTGCAGACATCCTTCATCTGTTT 58.992 43.478 8.42 0.00 41.62 2.83
4411 7500 5.164620 TGCAGACATCCTTCATCTGTTTA 57.835 39.130 2.72 0.00 41.62 2.01
4412 7501 5.181009 TGCAGACATCCTTCATCTGTTTAG 58.819 41.667 2.72 0.00 41.62 1.85
4413 7502 5.181748 GCAGACATCCTTCATCTGTTTAGT 58.818 41.667 2.72 0.00 41.62 2.24
4414 7503 5.293079 GCAGACATCCTTCATCTGTTTAGTC 59.707 44.000 2.72 0.00 41.62 2.59
4415 7504 5.518128 CAGACATCCTTCATCTGTTTAGTCG 59.482 44.000 0.00 0.00 36.02 4.18
4416 7505 4.759782 ACATCCTTCATCTGTTTAGTCGG 58.240 43.478 0.00 0.00 0.00 4.79
4417 7506 3.247006 TCCTTCATCTGTTTAGTCGGC 57.753 47.619 0.00 0.00 0.00 5.54
4418 7507 2.565391 TCCTTCATCTGTTTAGTCGGCA 59.435 45.455 0.00 0.00 0.00 5.69
4442 7531 0.108207 GGATGCAGAGGAGGACCATG 59.892 60.000 0.00 0.00 38.94 3.66
4443 7532 0.108207 GATGCAGAGGAGGACCATGG 59.892 60.000 11.19 11.19 38.94 3.66
4461 7550 3.733344 GAGTTGCGGCATCGGGCTA 62.733 63.158 2.28 0.00 44.01 3.93
4471 7560 2.116238 GCATCGGGCTAAGGGGATATA 58.884 52.381 0.00 0.00 40.25 0.86
4474 7563 4.770795 CATCGGGCTAAGGGGATATAAAG 58.229 47.826 0.00 0.00 0.00 1.85
4483 7572 7.505923 GGCTAAGGGGATATAAAGACAACAATT 59.494 37.037 0.00 0.00 0.00 2.32
4484 7573 8.352942 GCTAAGGGGATATAAAGACAACAATTG 58.647 37.037 3.24 3.24 0.00 2.32
4485 7574 9.627123 CTAAGGGGATATAAAGACAACAATTGA 57.373 33.333 13.59 0.00 0.00 2.57
4486 7575 8.525290 AAGGGGATATAAAGACAACAATTGAG 57.475 34.615 13.59 6.78 0.00 3.02
4488 7577 6.265422 GGGGATATAAAGACAACAATTGAGGG 59.735 42.308 13.59 3.39 0.00 4.30
4489 7578 7.060421 GGGATATAAAGACAACAATTGAGGGA 58.940 38.462 13.59 0.00 0.00 4.20
4504 7675 7.291885 ACAATTGAGGGAGAGAGATCATCATTA 59.708 37.037 13.59 0.00 0.00 1.90
4507 7678 6.321321 TGAGGGAGAGAGATCATCATTATGT 58.679 40.000 0.00 0.00 34.50 2.29
4551 7722 6.554982 TGCCACATCTTCATTCTAGGTACTAT 59.445 38.462 0.00 0.00 41.70 2.12
4559 7732 7.718314 TCTTCATTCTAGGTACTATCGCTAACA 59.282 37.037 0.00 0.00 41.70 2.41
4566 7739 2.873133 ACTATCGCTAACACTCTGCC 57.127 50.000 0.00 0.00 0.00 4.85
4567 7740 1.409427 ACTATCGCTAACACTCTGCCC 59.591 52.381 0.00 0.00 0.00 5.36
4569 7742 1.264749 ATCGCTAACACTCTGCCCCA 61.265 55.000 0.00 0.00 0.00 4.96
4592 7766 7.118390 CCCAAGTCTTGTTATTACAGTTCTCTG 59.882 40.741 11.61 0.00 46.18 3.35
4599 7773 7.658179 TGTTATTACAGTTCTCTGCTTCTTG 57.342 36.000 0.00 0.00 44.77 3.02
4615 7789 5.122239 TGCTTCTTGGTTCGTTCTATTCATG 59.878 40.000 0.00 0.00 0.00 3.07
4628 7802 2.839486 ATTCATGTCACAGTGTCGGT 57.161 45.000 0.00 0.00 0.00 4.69
4634 7808 4.021456 TCATGTCACAGTGTCGGTTAGAAT 60.021 41.667 0.00 0.00 0.00 2.40
4638 9055 4.748102 GTCACAGTGTCGGTTAGAATTTGA 59.252 41.667 0.00 0.00 0.00 2.69
4640 9057 5.995282 TCACAGTGTCGGTTAGAATTTGATT 59.005 36.000 0.00 0.00 0.00 2.57
4664 9186 6.943981 TGCATAGCTGATACGATTAAAACAC 58.056 36.000 0.00 0.00 0.00 3.32
4703 9225 1.188219 GGCAGCCGAGATGGATCCTA 61.188 60.000 14.23 0.00 42.00 2.94
4731 9258 5.471556 TGGAACATTTGAATGCATGAACT 57.528 34.783 0.00 0.00 40.04 3.01
4742 9269 0.675837 GCATGAACTCAGAGCAGCCA 60.676 55.000 0.00 0.00 33.00 4.75
4746 9500 1.417517 TGAACTCAGAGCAGCCAAAGA 59.582 47.619 0.00 0.00 0.00 2.52
4750 9504 2.836981 ACTCAGAGCAGCCAAAGACTAT 59.163 45.455 0.00 0.00 0.00 2.12
4752 9506 3.866651 TCAGAGCAGCCAAAGACTATTC 58.133 45.455 0.00 0.00 0.00 1.75
4756 9510 4.163839 AGAGCAGCCAAAGACTATTCTGAT 59.836 41.667 0.00 0.00 29.98 2.90
4761 9515 4.080695 AGCCAAAGACTATTCTGATGCTGA 60.081 41.667 0.00 0.00 31.66 4.26
4762 9516 4.820716 GCCAAAGACTATTCTGATGCTGAT 59.179 41.667 0.00 0.00 29.98 2.90
4780 9534 6.927416 TGCTGATGCATGAGTTTATTTTTCT 58.073 32.000 14.88 0.00 45.31 2.52
4781 9535 7.380536 TGCTGATGCATGAGTTTATTTTTCTT 58.619 30.769 14.88 0.00 45.31 2.52
4782 9536 7.874016 TGCTGATGCATGAGTTTATTTTTCTTT 59.126 29.630 14.88 0.00 45.31 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 133 2.554272 CAACGAAAACCGGAGCCG 59.446 61.111 9.46 8.66 43.93 5.52
357 364 1.623311 CCCATCCTTGTTCCCAAAACC 59.377 52.381 0.00 0.00 0.00 3.27
452 462 0.102300 GCAACCAAACGCCAAAGACT 59.898 50.000 0.00 0.00 0.00 3.24
503 514 4.020617 CAGGAGCGGAACCAGGCA 62.021 66.667 0.00 0.00 0.00 4.75
563 574 0.317269 GCATCGTTGAATGATGGGCG 60.317 55.000 24.20 4.21 40.93 6.13
565 576 3.831729 CGCATCGTTGAATGATGGG 57.168 52.632 23.87 23.87 44.41 4.00
695 709 1.544825 CGGCTCAGGAGAGGGAAACA 61.545 60.000 0.00 0.00 42.33 2.83
722 736 1.601171 CACAGAGCCAAGGAGGAGG 59.399 63.158 0.00 0.00 41.22 4.30
808 822 1.380302 GGGGGACAGCTCACAATGT 59.620 57.895 0.00 0.00 0.00 2.71
845 859 9.083080 CATAAAGAAAAAGAACAGAAAAACGGT 57.917 29.630 0.00 0.00 0.00 4.83
869 884 4.098914 AGATTACAACCACACACCACAT 57.901 40.909 0.00 0.00 0.00 3.21
871 886 3.550030 GCAAGATTACAACCACACACCAC 60.550 47.826 0.00 0.00 0.00 4.16
899 914 1.836391 CCATCAACCGGCCAGGATA 59.164 57.895 18.74 5.49 45.00 2.59
1015 1030 2.511218 TCAAGCTCTTGAGGGGCATAAT 59.489 45.455 8.14 0.00 43.90 1.28
1042 1057 3.788227 AGCCAGGTCAGTAATGAACAA 57.212 42.857 11.32 0.00 0.00 2.83
1111 1126 3.573598 GAGCACGATCGATCTGAATGAT 58.426 45.455 24.34 13.66 38.27 2.45
1180 1195 1.305549 GGGAAGGACAGGGACCGTA 60.306 63.158 0.00 0.00 0.00 4.02
1183 1198 0.621862 ATCTGGGAAGGACAGGGACC 60.622 60.000 0.00 0.00 36.62 4.46
1230 1245 7.395190 TTCCACCATTCTCACTAAATTCATG 57.605 36.000 0.00 0.00 0.00 3.07
1240 1255 2.648059 CTCCCATTCCACCATTCTCAC 58.352 52.381 0.00 0.00 0.00 3.51
1242 1257 1.846439 TCCTCCCATTCCACCATTCTC 59.154 52.381 0.00 0.00 0.00 2.87
1385 1400 4.202253 TGAGACTGTGGACATGGTATATGC 60.202 45.833 0.00 0.00 0.00 3.14
1487 1502 4.826274 ATGGTAAGCTTCTGCAGTCTTA 57.174 40.909 14.67 15.64 42.74 2.10
1543 1558 2.158900 CGAACCTATGGAGTGCAGGAAT 60.159 50.000 0.00 0.00 33.44 3.01
1620 1635 2.551459 GCAGTATAGCTCCAAATGCCTG 59.449 50.000 0.00 0.00 0.00 4.85
1644 1659 0.966179 TGGAAACGAGCAGTGCTAGA 59.034 50.000 29.01 5.89 39.88 2.43
1775 1790 5.512942 TGTCTCCAAATTGTAGGGATCAA 57.487 39.130 0.00 0.00 0.00 2.57
2100 4889 6.657836 ACAAGTGTGAACAACAGTAACTAC 57.342 37.500 0.00 0.00 41.83 2.73
2132 4983 7.489435 CACAGTGAGATGAAATAACGTATGAGT 59.511 37.037 0.00 0.00 0.00 3.41
2139 4994 8.018677 AGTTAACACAGTGAGATGAAATAACG 57.981 34.615 7.81 0.00 0.00 3.18
2158 5017 3.805207 ACCCAACTGTGACAGAGTTAAC 58.195 45.455 20.97 0.00 35.18 2.01
2251 5115 2.730404 CTCAAATCGATCTGCATCCTCG 59.270 50.000 0.00 6.41 0.00 4.63
2261 5125 9.430838 CATTTTGAAGACATACTCAAATCGATC 57.569 33.333 0.00 0.00 32.99 3.69
2263 5127 8.322906 ACATTTTGAAGACATACTCAAATCGA 57.677 30.769 0.00 0.00 32.99 3.59
2288 5152 8.023128 GCAGATGTAGCTAAATGTTTTTCTTGA 58.977 33.333 0.00 0.00 0.00 3.02
2343 5207 6.371548 GTCATCAAAGGTGTAGCTGTTCATAA 59.628 38.462 0.00 0.00 0.00 1.90
2437 5302 3.205282 TGACAGAGGATCCTATGGTCTCA 59.795 47.826 33.84 26.12 39.36 3.27
2652 5517 3.620719 GCTGTCATTCTTCTCATGGTCCA 60.621 47.826 0.00 0.00 0.00 4.02
2803 5668 3.060020 CTTGCCGCCATTCAGCCAG 62.060 63.158 0.00 0.00 0.00 4.85
2816 5681 1.288127 CTGCAACCTTCAGCTTGCC 59.712 57.895 3.48 0.00 41.83 4.52
2860 5725 4.286032 GGGTATCCTGCATCACCAACTATA 59.714 45.833 8.03 0.00 32.42 1.31
2864 5729 1.212935 AGGGTATCCTGCATCACCAAC 59.787 52.381 0.00 0.00 42.98 3.77
2990 5855 4.097741 CCATGTGTCTTTGAACCTTGTCAA 59.902 41.667 0.00 0.00 35.72 3.18
2993 5858 3.897239 TCCATGTGTCTTTGAACCTTGT 58.103 40.909 0.00 0.00 0.00 3.16
3048 5913 1.668151 GCAACCAGACTGTCCGGAC 60.668 63.158 28.17 28.17 0.00 4.79
3133 5998 2.185310 AATCCGGCTCCTCAACGCTT 62.185 55.000 0.00 0.00 0.00 4.68
3154 6028 0.981183 ACTGACGCACTTCCCCATAA 59.019 50.000 0.00 0.00 0.00 1.90
3216 6090 7.148423 CGGATGACATGATTTTCAAGAAGTACA 60.148 37.037 0.00 0.00 0.00 2.90
3228 6102 5.994054 CCTACTGATTCGGATGACATGATTT 59.006 40.000 0.00 0.00 0.00 2.17
3229 6103 5.070981 ACCTACTGATTCGGATGACATGATT 59.929 40.000 0.00 0.00 0.00 2.57
3231 6105 3.960755 ACCTACTGATTCGGATGACATGA 59.039 43.478 0.00 0.00 0.00 3.07
3249 6123 4.076394 GGGCAGTTGTGTTAATTCACCTA 58.924 43.478 0.00 0.00 37.51 3.08
3346 6221 3.012518 CCTGGCCAACTTAACAGATGAG 58.987 50.000 7.01 0.00 32.86 2.90
3356 6235 1.063717 CCATATCCACCTGGCCAACTT 60.064 52.381 7.01 0.00 34.44 2.66
3365 6244 2.040178 GGTCGTTCTCCATATCCACCT 58.960 52.381 0.00 0.00 0.00 4.00
3368 6259 3.371034 TCAAGGTCGTTCTCCATATCCA 58.629 45.455 0.00 0.00 0.00 3.41
3372 6263 4.451629 GACTTCAAGGTCGTTCTCCATA 57.548 45.455 0.00 0.00 0.00 2.74
3373 6264 3.320673 GACTTCAAGGTCGTTCTCCAT 57.679 47.619 0.00 0.00 0.00 3.41
3374 6265 2.814280 GACTTCAAGGTCGTTCTCCA 57.186 50.000 0.00 0.00 0.00 3.86
3382 6273 0.235926 GTTGCAGCGACTTCAAGGTC 59.764 55.000 5.41 0.00 0.00 3.85
3383 6274 0.463654 TGTTGCAGCGACTTCAAGGT 60.464 50.000 14.20 0.00 0.00 3.50
3444 6335 3.766591 TGTCTCTCTTCCTCTGATGTTCC 59.233 47.826 0.00 0.00 0.00 3.62
3521 6417 6.611642 AGAATGATAGCTGTGGTACCTAGAAA 59.388 38.462 14.36 4.07 0.00 2.52
3532 6428 3.490155 CGAAGCAGAGAATGATAGCTGTG 59.510 47.826 0.00 0.00 35.42 3.66
3535 6431 3.636300 ACTCGAAGCAGAGAATGATAGCT 59.364 43.478 10.22 0.00 40.57 3.32
3593 6553 6.190954 AGTTGTAACAAAAGAACAGACCAC 57.809 37.500 0.00 0.00 0.00 4.16
3598 6558 8.138365 TGCTAGTAGTTGTAACAAAAGAACAG 57.862 34.615 0.00 0.00 0.00 3.16
3664 6692 6.907853 TGATCGAGAGGAAATACATGAGAT 57.092 37.500 0.00 0.00 0.00 2.75
3667 6695 7.309438 CCAGTATGATCGAGAGGAAATACATGA 60.309 40.741 0.00 0.00 39.69 3.07
3668 6696 6.810676 CCAGTATGATCGAGAGGAAATACATG 59.189 42.308 0.00 0.00 39.69 3.21
3669 6697 6.573289 GCCAGTATGATCGAGAGGAAATACAT 60.573 42.308 0.00 0.00 39.69 2.29
3671 6699 5.164954 GCCAGTATGATCGAGAGGAAATAC 58.835 45.833 0.00 0.00 39.69 1.89
3673 6701 3.643320 TGCCAGTATGATCGAGAGGAAAT 59.357 43.478 0.00 0.00 39.69 2.17
3684 6713 3.689347 TCAAAGCAGTTGCCAGTATGAT 58.311 40.909 0.00 0.00 43.38 2.45
3687 6716 4.379813 CGATTTCAAAGCAGTTGCCAGTAT 60.380 41.667 0.00 0.00 43.38 2.12
3689 6718 2.287788 CGATTTCAAAGCAGTTGCCAGT 60.288 45.455 0.00 0.00 43.38 4.00
3704 6733 8.272176 CAGTCTACTAAATGAAGCATCGATTTC 58.728 37.037 0.00 0.00 0.00 2.17
3709 6738 5.233050 CACCAGTCTACTAAATGAAGCATCG 59.767 44.000 0.00 0.00 0.00 3.84
3734 6815 2.866156 CGTGCACCAGGATGTAATACAG 59.134 50.000 12.15 0.00 0.00 2.74
3781 6863 7.227512 CCTACCATCTGATCACATAAAGGTTTC 59.772 40.741 0.00 0.00 0.00 2.78
3800 6882 1.439543 GATGAAGGCTCCCCTACCAT 58.560 55.000 0.00 0.00 41.90 3.55
3804 6886 1.120530 GAACGATGAAGGCTCCCCTA 58.879 55.000 0.00 0.00 41.90 3.53
3809 6891 1.005340 CAGCAGAACGATGAAGGCTC 58.995 55.000 0.00 0.00 30.38 4.70
3819 6901 0.036010 ACCTCCATTCCAGCAGAACG 60.036 55.000 0.00 0.00 37.29 3.95
3846 6928 4.827087 CAGCTCGGCGTCCATGCT 62.827 66.667 6.85 7.48 33.34 3.79
3881 6963 2.096019 GCTGCAGCAACAAAGTAGTCTC 60.096 50.000 33.36 0.00 41.59 3.36
3883 6965 2.322371 GCTGCAGCAACAAAGTAGTC 57.678 50.000 33.36 0.00 41.59 2.59
3932 7014 7.489113 CCAAGCAGACATATCACCAAAATAAAC 59.511 37.037 0.00 0.00 0.00 2.01
3934 7016 6.405731 GCCAAGCAGACATATCACCAAAATAA 60.406 38.462 0.00 0.00 0.00 1.40
3938 7020 2.754552 GCCAAGCAGACATATCACCAAA 59.245 45.455 0.00 0.00 0.00 3.28
4002 7091 6.887376 TCTCGACACATAAAATGCTTACTC 57.113 37.500 0.00 0.00 0.00 2.59
4010 7099 7.359262 TCGTGATTTTCTCGACACATAAAAT 57.641 32.000 0.00 0.00 37.45 1.82
4044 7133 3.440872 AGATAATCTCCTTAGCGGCTACG 59.559 47.826 9.68 7.93 44.63 3.51
4045 7134 4.218852 ACAGATAATCTCCTTAGCGGCTAC 59.781 45.833 9.68 0.00 30.90 3.58
4046 7135 4.218635 CACAGATAATCTCCTTAGCGGCTA 59.781 45.833 5.42 5.42 30.90 3.93
4047 7136 3.006323 CACAGATAATCTCCTTAGCGGCT 59.994 47.826 7.98 7.98 30.90 5.52
4048 7137 3.321497 CACAGATAATCTCCTTAGCGGC 58.679 50.000 0.00 0.00 30.90 6.53
4049 7138 3.006323 AGCACAGATAATCTCCTTAGCGG 59.994 47.826 0.00 0.00 30.90 5.52
4050 7139 4.250116 AGCACAGATAATCTCCTTAGCG 57.750 45.455 0.00 0.00 30.90 4.26
4051 7140 5.468409 GGAAAGCACAGATAATCTCCTTAGC 59.532 44.000 0.00 0.00 0.00 3.09
4052 7141 6.586344 TGGAAAGCACAGATAATCTCCTTAG 58.414 40.000 0.00 0.00 0.00 2.18
4053 7142 6.560003 TGGAAAGCACAGATAATCTCCTTA 57.440 37.500 0.00 0.00 0.00 2.69
4054 7143 5.441718 TGGAAAGCACAGATAATCTCCTT 57.558 39.130 0.00 0.00 0.00 3.36
4055 7144 5.455899 GGATGGAAAGCACAGATAATCTCCT 60.456 44.000 0.00 0.00 0.00 3.69
4061 7150 5.114764 TGATGGATGGAAAGCACAGATAA 57.885 39.130 0.00 0.00 0.00 1.75
4080 7169 1.059098 TCAGTCTGCACCCAACTGAT 58.941 50.000 10.75 0.00 43.25 2.90
4093 7182 7.715657 TGTTATGTTTGCAAATTCTTCAGTCT 58.284 30.769 16.21 0.00 0.00 3.24
4104 7193 3.323403 CCCCCTTCTGTTATGTTTGCAAA 59.677 43.478 8.05 8.05 0.00 3.68
4128 7217 0.322098 CCTGCCATTAACACACGGGA 60.322 55.000 0.00 0.00 0.00 5.14
4131 7220 0.810648 ATGCCTGCCATTAACACACG 59.189 50.000 0.00 0.00 0.00 4.49
4136 7225 3.056607 ACACAAGAATGCCTGCCATTAAC 60.057 43.478 0.00 0.00 44.02 2.01
4149 7238 4.274950 CCTTCACGTTTACCACACAAGAAT 59.725 41.667 0.00 0.00 0.00 2.40
4163 7252 0.393077 ACAGTAGCTGCCTTCACGTT 59.607 50.000 0.00 0.00 34.37 3.99
4166 7255 3.594603 TTCTACAGTAGCTGCCTTCAC 57.405 47.619 2.26 0.00 34.37 3.18
4170 7259 3.601443 CTGTTTCTACAGTAGCTGCCT 57.399 47.619 2.26 0.00 45.46 4.75
4173 7262 7.020461 AACATTCCCTGTTTCTACAGTAGCTG 61.020 42.308 2.26 0.00 45.98 4.24
4176 7265 5.122396 GCAACATTCCCTGTTTCTACAGTAG 59.878 44.000 0.47 0.47 45.98 2.57
4177 7266 5.001232 GCAACATTCCCTGTTTCTACAGTA 58.999 41.667 4.76 0.00 45.98 2.74
4179 7268 3.191371 GGCAACATTCCCTGTTTCTACAG 59.809 47.826 0.00 0.00 45.98 2.74
4180 7269 3.153919 GGCAACATTCCCTGTTTCTACA 58.846 45.455 0.00 0.00 45.98 2.74
4181 7270 3.421844 AGGCAACATTCCCTGTTTCTAC 58.578 45.455 0.00 0.00 45.98 2.59
4182 7271 3.686016 GAGGCAACATTCCCTGTTTCTA 58.314 45.455 0.00 0.00 45.98 2.10
4183 7272 2.519013 GAGGCAACATTCCCTGTTTCT 58.481 47.619 0.00 0.00 45.98 2.52
4184 7273 1.200020 CGAGGCAACATTCCCTGTTTC 59.800 52.381 0.00 0.00 45.98 2.78
4185 7274 1.202879 TCGAGGCAACATTCCCTGTTT 60.203 47.619 0.00 0.00 45.98 2.83
4187 7276 0.036010 CTCGAGGCAACATTCCCTGT 60.036 55.000 3.91 0.00 40.84 4.00
4188 7277 0.036010 ACTCGAGGCAACATTCCCTG 60.036 55.000 18.41 0.00 41.41 4.45
4189 7278 0.693049 AACTCGAGGCAACATTCCCT 59.307 50.000 18.41 0.00 41.41 4.20
4190 7279 1.200020 CAAACTCGAGGCAACATTCCC 59.800 52.381 18.41 0.00 41.41 3.97
4191 7280 1.880027 ACAAACTCGAGGCAACATTCC 59.120 47.619 18.41 0.00 41.41 3.01
4203 7292 5.744490 AGATAACCAAACGAAACAAACTCG 58.256 37.500 0.00 0.00 42.06 4.18
4220 7309 9.383462 CGTGTAGTGTATACTGATGAAGATAAC 57.617 37.037 1.82 0.00 37.78 1.89
4226 7315 9.333724 TCTATTCGTGTAGTGTATACTGATGAA 57.666 33.333 1.82 6.51 37.78 2.57
4230 7319 7.281549 TGCTTCTATTCGTGTAGTGTATACTGA 59.718 37.037 1.82 0.00 37.78 3.41
4240 7329 3.246226 GCCACATGCTTCTATTCGTGTAG 59.754 47.826 0.00 0.00 36.87 2.74
4251 7340 4.806571 CATGCTGCCACATGCTTC 57.193 55.556 0.00 0.00 40.89 3.86
4256 7345 0.542467 TTTGGGACATGCTGCCACAT 60.542 50.000 7.78 0.00 40.86 3.21
4257 7346 0.542467 ATTTGGGACATGCTGCCACA 60.542 50.000 7.78 3.34 40.86 4.17
4258 7347 0.108520 CATTTGGGACATGCTGCCAC 60.109 55.000 7.78 0.00 40.86 5.01
4261 7350 0.738412 GTGCATTTGGGACATGCTGC 60.738 55.000 6.46 0.00 46.22 5.25
4262 7351 0.108520 GGTGCATTTGGGACATGCTG 60.109 55.000 6.46 0.00 46.22 4.41
4263 7352 1.597797 CGGTGCATTTGGGACATGCT 61.598 55.000 6.46 0.00 46.22 3.79
4264 7353 1.153784 CGGTGCATTTGGGACATGC 60.154 57.895 0.00 0.00 46.25 4.06
4265 7354 1.153784 GCGGTGCATTTGGGACATG 60.154 57.895 0.00 0.00 40.06 3.21
4267 7356 1.395045 TTTGCGGTGCATTTGGGACA 61.395 50.000 0.00 0.00 40.06 4.02
4268 7357 0.037419 ATTTGCGGTGCATTTGGGAC 60.037 50.000 0.00 0.00 38.76 4.46
4279 7368 0.454196 GCGTATTTCCCATTTGCGGT 59.546 50.000 0.00 0.00 0.00 5.68
4282 7371 4.206200 CGTAATTGCGTATTTCCCATTTGC 59.794 41.667 7.86 0.00 0.00 3.68
4283 7372 4.206200 GCGTAATTGCGTATTTCCCATTTG 59.794 41.667 17.26 0.00 0.00 2.32
4286 7375 2.946329 TGCGTAATTGCGTATTTCCCAT 59.054 40.909 17.26 0.00 37.81 4.00
4287 7376 2.357075 TGCGTAATTGCGTATTTCCCA 58.643 42.857 17.26 2.19 37.81 4.37
4290 7379 3.659444 GCTCATGCGTAATTGCGTATTTC 59.341 43.478 16.07 5.68 35.15 2.17
4291 7380 3.312421 AGCTCATGCGTAATTGCGTATTT 59.688 39.130 16.07 0.00 45.42 1.40
4292 7381 2.872245 AGCTCATGCGTAATTGCGTATT 59.128 40.909 16.07 0.31 45.42 1.89
4293 7382 2.483876 AGCTCATGCGTAATTGCGTAT 58.516 42.857 17.26 15.25 45.42 3.06
4294 7383 1.934589 AGCTCATGCGTAATTGCGTA 58.065 45.000 17.26 13.49 45.42 4.42
4295 7384 1.086696 AAGCTCATGCGTAATTGCGT 58.913 45.000 17.26 0.00 45.42 5.24
4296 7385 3.059665 TGATAAGCTCATGCGTAATTGCG 60.060 43.478 11.89 11.89 45.42 4.85
4298 7387 6.358822 CACATTGATAAGCTCATGCGTAATTG 59.641 38.462 0.00 0.00 45.42 2.32
4299 7388 6.038603 ACACATTGATAAGCTCATGCGTAATT 59.961 34.615 0.00 0.00 45.42 1.40
4300 7389 5.528690 ACACATTGATAAGCTCATGCGTAAT 59.471 36.000 0.00 0.00 45.42 1.89
4301 7390 4.875536 ACACATTGATAAGCTCATGCGTAA 59.124 37.500 0.00 0.00 45.42 3.18
4302 7391 4.270808 CACACATTGATAAGCTCATGCGTA 59.729 41.667 0.00 0.00 45.42 4.42
4303 7392 3.064408 CACACATTGATAAGCTCATGCGT 59.936 43.478 0.00 0.00 45.42 5.24
4304 7393 3.614588 CACACATTGATAAGCTCATGCG 58.385 45.455 0.00 0.00 45.42 4.73
4305 7394 3.066342 AGCACACATTGATAAGCTCATGC 59.934 43.478 0.00 0.00 35.86 4.06
4306 7395 4.845387 GAGCACACATTGATAAGCTCATG 58.155 43.478 15.05 0.00 45.67 3.07
4309 7398 2.615912 GGGAGCACACATTGATAAGCTC 59.384 50.000 0.00 0.00 45.65 4.09
4310 7399 2.025981 TGGGAGCACACATTGATAAGCT 60.026 45.455 0.00 0.00 34.61 3.74
4311 7400 2.098117 GTGGGAGCACACATTGATAAGC 59.902 50.000 0.00 0.00 40.99 3.09
4312 7401 2.352651 CGTGGGAGCACACATTGATAAG 59.647 50.000 3.54 0.00 41.38 1.73
4313 7402 2.027653 TCGTGGGAGCACACATTGATAA 60.028 45.455 3.54 0.00 41.38 1.75
4314 7403 1.552792 TCGTGGGAGCACACATTGATA 59.447 47.619 3.54 0.00 41.38 2.15
4315 7404 0.324614 TCGTGGGAGCACACATTGAT 59.675 50.000 3.54 0.00 41.38 2.57
4316 7405 0.324614 ATCGTGGGAGCACACATTGA 59.675 50.000 3.54 0.00 41.38 2.57
4317 7406 0.729116 GATCGTGGGAGCACACATTG 59.271 55.000 3.54 0.00 41.38 2.82
4318 7407 0.392998 GGATCGTGGGAGCACACATT 60.393 55.000 3.54 0.00 41.38 2.71
4319 7408 1.221840 GGATCGTGGGAGCACACAT 59.778 57.895 3.54 0.00 41.38 3.21
4320 7409 1.552799 ATGGATCGTGGGAGCACACA 61.553 55.000 3.54 0.00 41.38 3.72
4321 7410 1.091771 CATGGATCGTGGGAGCACAC 61.092 60.000 0.00 0.00 37.99 3.82
4322 7411 1.221566 CATGGATCGTGGGAGCACA 59.778 57.895 0.00 0.00 0.00 4.57
4323 7412 0.107456 ATCATGGATCGTGGGAGCAC 59.893 55.000 0.00 0.00 0.00 4.40
4324 7413 0.394192 GATCATGGATCGTGGGAGCA 59.606 55.000 0.00 0.00 29.12 4.26
4325 7414 0.683973 AGATCATGGATCGTGGGAGC 59.316 55.000 0.00 0.00 43.17 4.70
4326 7415 3.766051 TCATAGATCATGGATCGTGGGAG 59.234 47.826 0.00 0.00 43.17 4.30
4327 7416 3.778265 TCATAGATCATGGATCGTGGGA 58.222 45.455 0.00 3.37 43.17 4.37
4328 7417 4.248859 GTTCATAGATCATGGATCGTGGG 58.751 47.826 0.00 1.63 43.17 4.61
4329 7418 4.886579 TGTTCATAGATCATGGATCGTGG 58.113 43.478 0.00 2.93 43.17 4.94
4330 7419 4.388165 GCTGTTCATAGATCATGGATCGTG 59.612 45.833 0.00 4.91 43.17 4.35
4331 7420 4.282957 AGCTGTTCATAGATCATGGATCGT 59.717 41.667 0.00 0.00 43.17 3.73
4332 7421 4.626172 CAGCTGTTCATAGATCATGGATCG 59.374 45.833 5.25 0.00 43.17 3.69
4333 7422 4.936411 CCAGCTGTTCATAGATCATGGATC 59.064 45.833 13.81 0.00 39.17 3.36
4334 7423 4.263374 CCCAGCTGTTCATAGATCATGGAT 60.263 45.833 13.81 0.00 35.16 3.41
4335 7424 3.072038 CCCAGCTGTTCATAGATCATGGA 59.928 47.826 13.81 0.00 35.16 3.41
4336 7425 3.072038 TCCCAGCTGTTCATAGATCATGG 59.928 47.826 13.81 1.57 35.16 3.66
4337 7426 4.347360 TCCCAGCTGTTCATAGATCATG 57.653 45.455 13.81 0.00 35.81 3.07
4338 7427 4.657504 TCTTCCCAGCTGTTCATAGATCAT 59.342 41.667 13.81 0.00 0.00 2.45
4339 7428 4.033009 TCTTCCCAGCTGTTCATAGATCA 58.967 43.478 13.81 0.00 0.00 2.92
4340 7429 4.679373 TCTTCCCAGCTGTTCATAGATC 57.321 45.455 13.81 0.00 0.00 2.75
4341 7430 4.141528 CCTTCTTCCCAGCTGTTCATAGAT 60.142 45.833 13.81 0.00 0.00 1.98
4342 7431 3.198635 CCTTCTTCCCAGCTGTTCATAGA 59.801 47.826 13.81 5.18 0.00 1.98
4343 7432 3.054802 ACCTTCTTCCCAGCTGTTCATAG 60.055 47.826 13.81 2.82 0.00 2.23
4344 7433 2.912956 ACCTTCTTCCCAGCTGTTCATA 59.087 45.455 13.81 0.00 0.00 2.15
4345 7434 1.707427 ACCTTCTTCCCAGCTGTTCAT 59.293 47.619 13.81 0.00 0.00 2.57
4346 7435 1.140312 ACCTTCTTCCCAGCTGTTCA 58.860 50.000 13.81 0.00 0.00 3.18
4347 7436 2.155279 GAACCTTCTTCCCAGCTGTTC 58.845 52.381 13.81 2.55 0.00 3.18
4348 7437 1.777272 AGAACCTTCTTCCCAGCTGTT 59.223 47.619 13.81 0.00 32.55 3.16
4349 7438 1.072965 CAGAACCTTCTTCCCAGCTGT 59.927 52.381 13.81 0.00 34.74 4.40
4350 7439 1.072965 ACAGAACCTTCTTCCCAGCTG 59.927 52.381 6.78 6.78 34.74 4.24
4351 7440 1.439543 ACAGAACCTTCTTCCCAGCT 58.560 50.000 0.00 0.00 34.74 4.24
4352 7441 2.278332 AACAGAACCTTCTTCCCAGC 57.722 50.000 0.00 0.00 34.74 4.85
4353 7442 3.149981 GGAAACAGAACCTTCTTCCCAG 58.850 50.000 0.00 0.00 34.74 4.45
4354 7443 2.783510 AGGAAACAGAACCTTCTTCCCA 59.216 45.455 0.00 0.00 33.95 4.37
4355 7444 3.510531 AGGAAACAGAACCTTCTTCCC 57.489 47.619 0.00 0.00 33.95 3.97
4356 7445 4.998033 CAGTAGGAAACAGAACCTTCTTCC 59.002 45.833 0.00 0.00 37.68 3.46
4357 7446 5.697178 GTCAGTAGGAAACAGAACCTTCTTC 59.303 44.000 0.00 0.00 37.68 2.87
4358 7447 5.130477 TGTCAGTAGGAAACAGAACCTTCTT 59.870 40.000 0.00 0.00 37.68 2.52
4359 7448 4.654262 TGTCAGTAGGAAACAGAACCTTCT 59.346 41.667 0.00 0.00 37.68 2.85
4360 7449 4.750598 GTGTCAGTAGGAAACAGAACCTTC 59.249 45.833 0.00 0.00 37.68 3.46
4361 7450 4.409247 AGTGTCAGTAGGAAACAGAACCTT 59.591 41.667 0.00 0.00 36.08 3.50
4362 7451 3.967987 AGTGTCAGTAGGAAACAGAACCT 59.032 43.478 0.00 0.00 36.08 3.50
4363 7452 4.058817 CAGTGTCAGTAGGAAACAGAACC 58.941 47.826 0.00 0.00 36.08 3.62
4364 7453 4.945246 TCAGTGTCAGTAGGAAACAGAAC 58.055 43.478 0.00 0.00 36.08 3.01
4365 7454 4.501571 GCTCAGTGTCAGTAGGAAACAGAA 60.502 45.833 0.00 0.00 36.08 3.02
4366 7455 3.005897 GCTCAGTGTCAGTAGGAAACAGA 59.994 47.826 0.00 0.00 36.08 3.41
4367 7456 3.006323 AGCTCAGTGTCAGTAGGAAACAG 59.994 47.826 0.00 0.00 36.08 3.16
4368 7457 2.965831 AGCTCAGTGTCAGTAGGAAACA 59.034 45.455 0.00 0.00 36.08 2.83
4369 7458 3.321497 CAGCTCAGTGTCAGTAGGAAAC 58.679 50.000 0.00 0.00 33.58 2.78
4370 7459 2.289072 GCAGCTCAGTGTCAGTAGGAAA 60.289 50.000 0.00 0.00 0.00 3.13
4371 7460 1.273606 GCAGCTCAGTGTCAGTAGGAA 59.726 52.381 0.00 0.00 0.00 3.36
4372 7461 0.891373 GCAGCTCAGTGTCAGTAGGA 59.109 55.000 0.00 0.00 0.00 2.94
4373 7462 0.605083 TGCAGCTCAGTGTCAGTAGG 59.395 55.000 0.00 0.00 0.00 3.18
4374 7463 1.543358 TCTGCAGCTCAGTGTCAGTAG 59.457 52.381 9.47 0.00 43.32 2.57
4375 7464 1.270826 GTCTGCAGCTCAGTGTCAGTA 59.729 52.381 9.47 0.00 43.32 2.74
4376 7465 0.033228 GTCTGCAGCTCAGTGTCAGT 59.967 55.000 9.47 0.00 43.32 3.41
4377 7466 0.033090 TGTCTGCAGCTCAGTGTCAG 59.967 55.000 9.47 2.34 43.32 3.51
4378 7467 0.683412 ATGTCTGCAGCTCAGTGTCA 59.317 50.000 9.47 9.98 43.32 3.58
4379 7468 1.357907 GATGTCTGCAGCTCAGTGTC 58.642 55.000 9.47 2.39 43.32 3.67
4380 7469 0.036577 GGATGTCTGCAGCTCAGTGT 60.037 55.000 9.47 0.00 43.32 3.55
4381 7470 0.249676 AGGATGTCTGCAGCTCAGTG 59.750 55.000 9.47 0.00 43.32 3.66
4382 7471 0.982704 AAGGATGTCTGCAGCTCAGT 59.017 50.000 9.47 1.78 43.32 3.41
4383 7472 1.066358 TGAAGGATGTCTGCAGCTCAG 60.066 52.381 9.47 6.79 44.21 3.35
4384 7473 0.978907 TGAAGGATGTCTGCAGCTCA 59.021 50.000 9.47 11.26 0.00 4.26
4385 7474 2.158928 AGATGAAGGATGTCTGCAGCTC 60.159 50.000 9.47 5.54 44.07 4.09
4386 7475 1.838715 AGATGAAGGATGTCTGCAGCT 59.161 47.619 9.47 0.00 42.69 4.24
4387 7476 1.941294 CAGATGAAGGATGTCTGCAGC 59.059 52.381 9.47 4.92 37.70 5.25
4388 7477 3.263489 ACAGATGAAGGATGTCTGCAG 57.737 47.619 7.63 7.63 42.33 4.41
4389 7478 3.708403 AACAGATGAAGGATGTCTGCA 57.292 42.857 1.81 0.00 42.33 4.41
4390 7479 5.181748 ACTAAACAGATGAAGGATGTCTGC 58.818 41.667 1.81 0.00 42.33 4.26
4391 7480 5.518128 CGACTAAACAGATGAAGGATGTCTG 59.482 44.000 0.00 0.00 43.76 3.51
4392 7481 5.394663 CCGACTAAACAGATGAAGGATGTCT 60.395 44.000 0.00 0.00 0.00 3.41
4393 7482 4.806247 CCGACTAAACAGATGAAGGATGTC 59.194 45.833 0.00 0.00 0.00 3.06
4394 7483 4.759782 CCGACTAAACAGATGAAGGATGT 58.240 43.478 0.00 0.00 0.00 3.06
4395 7484 3.557595 GCCGACTAAACAGATGAAGGATG 59.442 47.826 0.00 0.00 0.00 3.51
4396 7485 3.197766 TGCCGACTAAACAGATGAAGGAT 59.802 43.478 0.00 0.00 0.00 3.24
4397 7486 2.565391 TGCCGACTAAACAGATGAAGGA 59.435 45.455 0.00 0.00 0.00 3.36
4398 7487 2.673368 GTGCCGACTAAACAGATGAAGG 59.327 50.000 0.00 0.00 0.00 3.46
4399 7488 2.345641 CGTGCCGACTAAACAGATGAAG 59.654 50.000 0.00 0.00 0.00 3.02
4400 7489 2.333926 CGTGCCGACTAAACAGATGAA 58.666 47.619 0.00 0.00 0.00 2.57
4401 7490 1.403647 CCGTGCCGACTAAACAGATGA 60.404 52.381 0.00 0.00 0.00 2.92
4402 7491 0.999406 CCGTGCCGACTAAACAGATG 59.001 55.000 0.00 0.00 0.00 2.90
4403 7492 0.606604 ACCGTGCCGACTAAACAGAT 59.393 50.000 0.00 0.00 0.00 2.90
4404 7493 0.319211 CACCGTGCCGACTAAACAGA 60.319 55.000 0.00 0.00 0.00 3.41
4405 7494 1.289109 CCACCGTGCCGACTAAACAG 61.289 60.000 0.00 0.00 0.00 3.16
4406 7495 1.301087 CCACCGTGCCGACTAAACA 60.301 57.895 0.00 0.00 0.00 2.83
4407 7496 0.390735 ATCCACCGTGCCGACTAAAC 60.391 55.000 0.00 0.00 0.00 2.01
4408 7497 0.390603 CATCCACCGTGCCGACTAAA 60.391 55.000 0.00 0.00 0.00 1.85
4409 7498 1.216977 CATCCACCGTGCCGACTAA 59.783 57.895 0.00 0.00 0.00 2.24
4410 7499 2.889617 CATCCACCGTGCCGACTA 59.110 61.111 0.00 0.00 0.00 2.59
4411 7500 4.760047 GCATCCACCGTGCCGACT 62.760 66.667 0.00 0.00 36.61 4.18
4413 7502 4.758251 CTGCATCCACCGTGCCGA 62.758 66.667 0.00 0.00 41.83 5.54
4414 7503 4.758251 TCTGCATCCACCGTGCCG 62.758 66.667 0.00 0.00 41.83 5.69
4415 7504 2.821366 CTCTGCATCCACCGTGCC 60.821 66.667 0.00 0.00 41.83 5.01
4416 7505 2.821366 CCTCTGCATCCACCGTGC 60.821 66.667 0.00 0.00 42.81 5.34
4417 7506 1.153489 CTCCTCTGCATCCACCGTG 60.153 63.158 0.00 0.00 0.00 4.94
4418 7507 2.362369 CCTCCTCTGCATCCACCGT 61.362 63.158 0.00 0.00 0.00 4.83
4421 7510 1.267574 TGGTCCTCCTCTGCATCCAC 61.268 60.000 0.00 0.00 34.23 4.02
4424 7513 0.108207 CCATGGTCCTCCTCTGCATC 59.892 60.000 2.57 0.00 34.23 3.91
4443 7532 3.733344 TAGCCCGATGCCGCAACTC 62.733 63.158 0.00 0.00 42.71 3.01
4461 7550 7.561356 CCTCAATTGTTGTCTTTATATCCCCTT 59.439 37.037 5.13 0.00 0.00 3.95
4471 7560 5.072329 TCTCTCTCCCTCAATTGTTGTCTTT 59.928 40.000 5.13 0.00 0.00 2.52
4474 7563 4.543590 TCTCTCTCCCTCAATTGTTGTC 57.456 45.455 5.13 0.00 0.00 3.18
4483 7572 6.321321 ACATAATGATGATCTCTCTCCCTCA 58.679 40.000 0.00 0.00 36.48 3.86
4484 7573 6.855763 ACATAATGATGATCTCTCTCCCTC 57.144 41.667 0.00 0.00 36.48 4.30
4485 7574 8.733092 TTTACATAATGATGATCTCTCTCCCT 57.267 34.615 0.00 0.00 36.48 4.20
4486 7575 9.784531 TTTTTACATAATGATGATCTCTCTCCC 57.215 33.333 0.00 0.00 36.48 4.30
4516 7687 6.600882 ATGAAGATGTGGCAGAAAGAATTT 57.399 33.333 0.00 0.00 43.98 1.82
4518 7689 5.950549 AGAATGAAGATGTGGCAGAAAGAAT 59.049 36.000 0.00 0.00 0.00 2.40
4551 7722 1.476845 TTGGGGCAGAGTGTTAGCGA 61.477 55.000 0.00 0.00 0.00 4.93
4559 7732 0.846693 AACAAGACTTGGGGCAGAGT 59.153 50.000 19.16 0.00 34.12 3.24
4566 7739 7.118390 CAGAGAACTGTAATAACAAGACTTGGG 59.882 40.741 19.16 0.00 39.11 4.12
4567 7740 7.360438 GCAGAGAACTGTAATAACAAGACTTGG 60.360 40.741 19.16 1.64 45.04 3.61
4569 7742 7.445945 AGCAGAGAACTGTAATAACAAGACTT 58.554 34.615 0.00 0.00 45.04 3.01
4592 7766 5.122396 ACATGAATAGAACGAACCAAGAAGC 59.878 40.000 0.00 0.00 0.00 3.86
4599 7773 4.929808 ACTGTGACATGAATAGAACGAACC 59.070 41.667 0.00 0.00 0.00 3.62
4615 7789 4.748102 TCAAATTCTAACCGACACTGTGAC 59.252 41.667 15.86 7.56 0.00 3.67
4628 7802 8.498358 CGTATCAGCTATGCAATCAAATTCTAA 58.502 33.333 0.00 0.00 0.00 2.10
4634 7808 6.866010 AATCGTATCAGCTATGCAATCAAA 57.134 33.333 0.00 0.00 0.00 2.69
4638 9055 8.070171 GTGTTTTAATCGTATCAGCTATGCAAT 58.930 33.333 0.00 0.00 0.00 3.56
4640 9057 6.761242 AGTGTTTTAATCGTATCAGCTATGCA 59.239 34.615 0.00 0.00 0.00 3.96
4703 9225 3.387374 TGCATTCAAATGTTCCAACCAGT 59.613 39.130 4.76 0.00 38.65 4.00
4731 9258 3.517100 AGAATAGTCTTTGGCTGCTCTGA 59.483 43.478 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.