Multiple sequence alignment - TraesCS6A01G052000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G052000 chr6A 100.000 3133 0 0 983 4115 26969885 26973017 0.000000e+00 5786
1 TraesCS6A01G052000 chr6A 100.000 748 0 0 1 748 26968903 26969650 0.000000e+00 1382
2 TraesCS6A01G052000 chr6B 92.608 2381 166 8 985 3360 46826778 46829153 0.000000e+00 3413
3 TraesCS6A01G052000 chr6B 93.177 1026 58 7 1842 2855 46879833 46880858 0.000000e+00 1496
4 TraesCS6A01G052000 chr6B 88.257 826 70 14 2888 3705 46880856 46881662 0.000000e+00 963
5 TraesCS6A01G052000 chr6B 87.259 777 85 9 1021 1793 46879060 46879826 0.000000e+00 874
6 TraesCS6A01G052000 chr6B 88.108 185 19 3 3735 3917 46881660 46881843 2.490000e-52 217
7 TraesCS6A01G052000 chr6B 77.838 185 29 9 444 619 46878859 46879040 2.020000e-18 104
8 TraesCS6A01G052000 chrUn 93.036 2240 143 8 1041 3279 95992730 95994957 0.000000e+00 3260
9 TraesCS6A01G052000 chrUn 92.225 2058 142 7 1021 3077 95826282 95828322 0.000000e+00 2898
10 TraesCS6A01G052000 chrUn 81.618 272 23 6 431 681 95992349 95992614 2.510000e-47 200
11 TraesCS6A01G052000 chrUn 84.574 188 8 6 452 619 95826076 95826262 2.540000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G052000 chr6A 26968903 26973017 4114 False 3584.0 5786 100.0000 1 4115 2 chr6A.!!$F1 4114
1 TraesCS6A01G052000 chr6B 46826778 46829153 2375 False 3413.0 3413 92.6080 985 3360 1 chr6B.!!$F1 2375
2 TraesCS6A01G052000 chr6B 46878859 46881843 2984 False 730.8 1496 86.9278 444 3917 5 chr6B.!!$F2 3473
3 TraesCS6A01G052000 chrUn 95992349 95994957 2608 False 1730.0 3260 87.3270 431 3279 2 chrUn.!!$F2 2848
4 TraesCS6A01G052000 chrUn 95826076 95828322 2246 False 1532.5 2898 88.3995 452 3077 2 chrUn.!!$F1 2625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.040204 ATTTGCCCACCTCCTTCCAG 59.960 55.0 0.0 0.0 0.00 3.86 F
1617 1657 0.027194 CTGATGAGGCAACATTCGCG 59.973 55.0 0.0 0.0 41.41 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1702 1.005097 ACAATCTTCCCATGCAGCTGA 59.995 47.619 20.43 2.7 0.00 4.26 R
3547 3606 1.050988 TGGAGCATAGGCAGGGAGAC 61.051 60.000 0.67 0.0 44.61 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.961360 TGGTTTTTCCTTTTTGGTTTTTGT 57.039 29.167 0.00 0.00 37.07 2.83
26 27 8.459911 TTGGTTTTTCCTTTTTGGTTTTTGTA 57.540 26.923 0.00 0.00 37.07 2.41
27 28 7.872881 TGGTTTTTCCTTTTTGGTTTTTGTAC 58.127 30.769 0.00 0.00 37.07 2.90
28 29 7.720074 TGGTTTTTCCTTTTTGGTTTTTGTACT 59.280 29.630 0.00 0.00 37.07 2.73
29 30 8.569641 GGTTTTTCCTTTTTGGTTTTTGTACTT 58.430 29.630 0.00 0.00 37.07 2.24
30 31 9.953697 GTTTTTCCTTTTTGGTTTTTGTACTTT 57.046 25.926 0.00 0.00 37.07 2.66
55 56 8.757164 TTTTCTGGTTTTTCTTCTGTTTCTTC 57.243 30.769 0.00 0.00 0.00 2.87
56 57 6.451064 TCTGGTTTTTCTTCTGTTTCTTCC 57.549 37.500 0.00 0.00 0.00 3.46
57 58 5.949354 TCTGGTTTTTCTTCTGTTTCTTCCA 59.051 36.000 0.00 0.00 0.00 3.53
58 59 6.607198 TCTGGTTTTTCTTCTGTTTCTTCCAT 59.393 34.615 0.00 0.00 0.00 3.41
59 60 6.805713 TGGTTTTTCTTCTGTTTCTTCCATC 58.194 36.000 0.00 0.00 0.00 3.51
60 61 6.607198 TGGTTTTTCTTCTGTTTCTTCCATCT 59.393 34.615 0.00 0.00 0.00 2.90
61 62 7.124147 TGGTTTTTCTTCTGTTTCTTCCATCTT 59.876 33.333 0.00 0.00 0.00 2.40
62 63 7.981789 GGTTTTTCTTCTGTTTCTTCCATCTTT 59.018 33.333 0.00 0.00 0.00 2.52
63 64 9.371136 GTTTTTCTTCTGTTTCTTCCATCTTTT 57.629 29.630 0.00 0.00 0.00 2.27
64 65 8.931385 TTTTCTTCTGTTTCTTCCATCTTTTG 57.069 30.769 0.00 0.00 0.00 2.44
65 66 7.880160 TTCTTCTGTTTCTTCCATCTTTTGA 57.120 32.000 0.00 0.00 0.00 2.69
66 67 8.469309 TTCTTCTGTTTCTTCCATCTTTTGAT 57.531 30.769 0.00 0.00 40.34 2.57
67 68 8.469309 TCTTCTGTTTCTTCCATCTTTTGATT 57.531 30.769 0.00 0.00 36.97 2.57
68 69 8.917088 TCTTCTGTTTCTTCCATCTTTTGATTT 58.083 29.630 0.00 0.00 36.97 2.17
69 70 9.189723 CTTCTGTTTCTTCCATCTTTTGATTTC 57.810 33.333 0.00 0.00 36.97 2.17
70 71 8.236585 TCTGTTTCTTCCATCTTTTGATTTCA 57.763 30.769 0.00 0.00 36.97 2.69
71 72 8.137437 TCTGTTTCTTCCATCTTTTGATTTCAC 58.863 33.333 0.00 0.00 36.97 3.18
72 73 8.010733 TGTTTCTTCCATCTTTTGATTTCACT 57.989 30.769 0.00 0.00 36.97 3.41
73 74 8.477256 TGTTTCTTCCATCTTTTGATTTCACTT 58.523 29.630 0.00 0.00 36.97 3.16
74 75 9.317936 GTTTCTTCCATCTTTTGATTTCACTTT 57.682 29.630 0.00 0.00 36.97 2.66
75 76 9.889128 TTTCTTCCATCTTTTGATTTCACTTTT 57.111 25.926 0.00 0.00 36.97 2.27
76 77 9.533253 TTCTTCCATCTTTTGATTTCACTTTTC 57.467 29.630 0.00 0.00 36.97 2.29
77 78 8.143835 TCTTCCATCTTTTGATTTCACTTTTCC 58.856 33.333 0.00 0.00 36.97 3.13
78 79 6.446318 TCCATCTTTTGATTTCACTTTTCCG 58.554 36.000 0.00 0.00 36.97 4.30
79 80 6.040391 TCCATCTTTTGATTTCACTTTTCCGT 59.960 34.615 0.00 0.00 36.97 4.69
80 81 6.701400 CCATCTTTTGATTTCACTTTTCCGTT 59.299 34.615 0.00 0.00 36.97 4.44
81 82 7.224557 CCATCTTTTGATTTCACTTTTCCGTTT 59.775 33.333 0.00 0.00 36.97 3.60
82 83 8.603181 CATCTTTTGATTTCACTTTTCCGTTTT 58.397 29.630 0.00 0.00 36.97 2.43
83 84 8.180317 TCTTTTGATTTCACTTTTCCGTTTTC 57.820 30.769 0.00 0.00 0.00 2.29
84 85 8.032451 TCTTTTGATTTCACTTTTCCGTTTTCT 58.968 29.630 0.00 0.00 0.00 2.52
85 86 8.541133 TTTTGATTTCACTTTTCCGTTTTCTT 57.459 26.923 0.00 0.00 0.00 2.52
86 87 7.749539 TTGATTTCACTTTTCCGTTTTCTTC 57.250 32.000 0.00 0.00 0.00 2.87
87 88 7.095695 TGATTTCACTTTTCCGTTTTCTTCT 57.904 32.000 0.00 0.00 0.00 2.85
88 89 7.543756 TGATTTCACTTTTCCGTTTTCTTCTT 58.456 30.769 0.00 0.00 0.00 2.52
89 90 8.032451 TGATTTCACTTTTCCGTTTTCTTCTTT 58.968 29.630 0.00 0.00 0.00 2.52
90 91 7.806149 TTTCACTTTTCCGTTTTCTTCTTTC 57.194 32.000 0.00 0.00 0.00 2.62
91 92 5.886992 TCACTTTTCCGTTTTCTTCTTTCC 58.113 37.500 0.00 0.00 0.00 3.13
92 93 5.650703 TCACTTTTCCGTTTTCTTCTTTCCT 59.349 36.000 0.00 0.00 0.00 3.36
93 94 6.152154 TCACTTTTCCGTTTTCTTCTTTCCTT 59.848 34.615 0.00 0.00 0.00 3.36
94 95 6.811665 CACTTTTCCGTTTTCTTCTTTCCTTT 59.188 34.615 0.00 0.00 0.00 3.11
95 96 7.330946 CACTTTTCCGTTTTCTTCTTTCCTTTT 59.669 33.333 0.00 0.00 0.00 2.27
96 97 7.544566 ACTTTTCCGTTTTCTTCTTTCCTTTTC 59.455 33.333 0.00 0.00 0.00 2.29
97 98 6.518208 TTCCGTTTTCTTCTTTCCTTTTCA 57.482 33.333 0.00 0.00 0.00 2.69
98 99 6.709018 TCCGTTTTCTTCTTTCCTTTTCAT 57.291 33.333 0.00 0.00 0.00 2.57
99 100 6.735130 TCCGTTTTCTTCTTTCCTTTTCATC 58.265 36.000 0.00 0.00 0.00 2.92
100 101 6.546034 TCCGTTTTCTTCTTTCCTTTTCATCT 59.454 34.615 0.00 0.00 0.00 2.90
101 102 7.068226 TCCGTTTTCTTCTTTCCTTTTCATCTT 59.932 33.333 0.00 0.00 0.00 2.40
102 103 7.706607 CCGTTTTCTTCTTTCCTTTTCATCTTT 59.293 33.333 0.00 0.00 0.00 2.52
103 104 9.730420 CGTTTTCTTCTTTCCTTTTCATCTTTA 57.270 29.630 0.00 0.00 0.00 1.85
145 146 8.855110 ACATAAACATGTTCAAATAAGTGGTGA 58.145 29.630 12.39 0.00 0.00 4.02
146 147 9.689976 CATAAACATGTTCAAATAAGTGGTGAA 57.310 29.630 12.39 0.00 0.00 3.18
180 181 8.948853 AATACATGACATCTTTTTACAACACG 57.051 30.769 0.00 0.00 0.00 4.49
181 182 6.612247 ACATGACATCTTTTTACAACACGA 57.388 33.333 0.00 0.00 0.00 4.35
182 183 7.202016 ACATGACATCTTTTTACAACACGAT 57.798 32.000 0.00 0.00 0.00 3.73
183 184 7.077605 ACATGACATCTTTTTACAACACGATG 58.922 34.615 0.00 0.00 35.58 3.84
184 185 6.852858 TGACATCTTTTTACAACACGATGA 57.147 33.333 0.00 0.00 34.10 2.92
185 186 7.252965 TGACATCTTTTTACAACACGATGAA 57.747 32.000 0.00 0.00 34.10 2.57
186 187 7.129622 TGACATCTTTTTACAACACGATGAAC 58.870 34.615 0.00 0.00 34.10 3.18
187 188 7.022055 ACATCTTTTTACAACACGATGAACA 57.978 32.000 0.00 0.00 34.10 3.18
188 189 7.648142 ACATCTTTTTACAACACGATGAACAT 58.352 30.769 0.00 0.00 34.10 2.71
189 190 8.134895 ACATCTTTTTACAACACGATGAACATT 58.865 29.630 0.00 0.00 34.10 2.71
190 191 8.967218 CATCTTTTTACAACACGATGAACATTT 58.033 29.630 0.00 0.00 32.21 2.32
191 192 8.918961 TCTTTTTACAACACGATGAACATTTT 57.081 26.923 0.00 0.00 0.00 1.82
192 193 9.015577 TCTTTTTACAACACGATGAACATTTTC 57.984 29.630 0.00 0.00 0.00 2.29
193 194 8.689251 TTTTTACAACACGATGAACATTTTCA 57.311 26.923 0.00 0.00 45.93 2.69
194 195 8.689251 TTTTACAACACGATGAACATTTTCAA 57.311 26.923 0.00 0.00 45.01 2.69
195 196 8.864069 TTTACAACACGATGAACATTTTCAAT 57.136 26.923 0.00 0.00 45.01 2.57
196 197 8.864069 TTACAACACGATGAACATTTTCAATT 57.136 26.923 0.00 0.00 45.01 2.32
197 198 7.769272 ACAACACGATGAACATTTTCAATTT 57.231 28.000 0.00 0.00 45.01 1.82
198 199 8.195617 ACAACACGATGAACATTTTCAATTTT 57.804 26.923 0.00 0.00 45.01 1.82
199 200 8.663911 ACAACACGATGAACATTTTCAATTTTT 58.336 25.926 0.00 0.00 45.01 1.94
200 201 8.935941 CAACACGATGAACATTTTCAATTTTTG 58.064 29.630 0.00 0.00 45.01 2.44
201 202 8.417780 ACACGATGAACATTTTCAATTTTTGA 57.582 26.923 0.00 0.00 45.01 2.69
202 203 8.327429 ACACGATGAACATTTTCAATTTTTGAC 58.673 29.630 0.00 0.00 45.01 3.18
203 204 8.326713 CACGATGAACATTTTCAATTTTTGACA 58.673 29.630 0.00 0.00 45.01 3.58
204 205 8.542132 ACGATGAACATTTTCAATTTTTGACAG 58.458 29.630 0.00 0.00 45.01 3.51
205 206 8.754096 CGATGAACATTTTCAATTTTTGACAGA 58.246 29.630 0.00 0.00 45.01 3.41
206 207 9.853921 GATGAACATTTTCAATTTTTGACAGAC 57.146 29.630 0.00 0.00 45.01 3.51
207 208 8.768957 TGAACATTTTCAATTTTTGACAGACA 57.231 26.923 0.00 0.00 38.87 3.41
208 209 9.381033 TGAACATTTTCAATTTTTGACAGACAT 57.619 25.926 0.00 0.00 38.87 3.06
284 285 9.980780 TTTCAAGAAAATGTTTTCGAATTTTCC 57.019 25.926 22.08 10.94 46.70 3.13
285 286 8.940768 TCAAGAAAATGTTTTCGAATTTTCCT 57.059 26.923 22.08 12.70 46.70 3.36
334 335 6.716898 AAAAACTAAGGTTATTCGGTCGAG 57.283 37.500 0.00 0.00 34.90 4.04
335 336 3.433513 ACTAAGGTTATTCGGTCGAGC 57.566 47.619 4.06 4.06 0.00 5.03
336 337 3.022406 ACTAAGGTTATTCGGTCGAGCT 58.978 45.455 13.48 0.00 0.00 4.09
337 338 3.446516 ACTAAGGTTATTCGGTCGAGCTT 59.553 43.478 13.48 0.00 34.58 3.74
338 339 2.295253 AGGTTATTCGGTCGAGCTTG 57.705 50.000 13.48 0.00 0.00 4.01
339 340 1.134788 AGGTTATTCGGTCGAGCTTGG 60.135 52.381 13.48 0.00 0.00 3.61
340 341 1.287425 GTTATTCGGTCGAGCTTGGG 58.713 55.000 13.48 0.00 0.00 4.12
341 342 0.177141 TTATTCGGTCGAGCTTGGGG 59.823 55.000 13.48 0.00 0.00 4.96
342 343 1.682451 TATTCGGTCGAGCTTGGGGG 61.682 60.000 13.48 0.00 0.00 5.40
344 345 3.072468 CGGTCGAGCTTGGGGGTA 61.072 66.667 13.48 0.00 0.00 3.69
345 346 2.432300 CGGTCGAGCTTGGGGGTAT 61.432 63.158 13.48 0.00 0.00 2.73
346 347 1.912971 GGTCGAGCTTGGGGGTATT 59.087 57.895 7.51 0.00 0.00 1.89
347 348 0.255033 GGTCGAGCTTGGGGGTATTT 59.745 55.000 7.51 0.00 0.00 1.40
348 349 1.379527 GTCGAGCTTGGGGGTATTTG 58.620 55.000 0.00 0.00 0.00 2.32
349 350 0.393808 TCGAGCTTGGGGGTATTTGC 60.394 55.000 0.00 0.00 0.00 3.68
350 351 1.384222 CGAGCTTGGGGGTATTTGCC 61.384 60.000 0.00 0.00 0.00 4.52
360 361 1.763968 GGTATTTGCCCACCTCCTTC 58.236 55.000 0.00 0.00 0.00 3.46
361 362 1.685180 GGTATTTGCCCACCTCCTTCC 60.685 57.143 0.00 0.00 0.00 3.46
362 363 1.005450 GTATTTGCCCACCTCCTTCCA 59.995 52.381 0.00 0.00 0.00 3.53
363 364 0.040204 ATTTGCCCACCTCCTTCCAG 59.960 55.000 0.00 0.00 0.00 3.86
364 365 2.713531 TTTGCCCACCTCCTTCCAGC 62.714 60.000 0.00 0.00 0.00 4.85
365 366 4.432741 GCCCACCTCCTTCCAGCC 62.433 72.222 0.00 0.00 0.00 4.85
366 367 3.732849 CCCACCTCCTTCCAGCCC 61.733 72.222 0.00 0.00 0.00 5.19
367 368 2.935481 CCACCTCCTTCCAGCCCA 60.935 66.667 0.00 0.00 0.00 5.36
368 369 2.673523 CACCTCCTTCCAGCCCAG 59.326 66.667 0.00 0.00 0.00 4.45
369 370 2.612115 ACCTCCTTCCAGCCCAGG 60.612 66.667 0.00 0.00 0.00 4.45
370 371 4.120755 CCTCCTTCCAGCCCAGGC 62.121 72.222 0.00 0.00 42.33 4.85
371 372 4.120755 CTCCTTCCAGCCCAGGCC 62.121 72.222 4.70 0.00 43.17 5.19
374 375 4.437587 CTTCCAGCCCAGGCCCAG 62.438 72.222 4.70 0.00 43.17 4.45
376 377 4.765970 TCCAGCCCAGGCCCAGAT 62.766 66.667 4.70 0.00 43.17 2.90
377 378 4.201122 CCAGCCCAGGCCCAGATC 62.201 72.222 4.70 0.00 43.17 2.75
378 379 4.559063 CAGCCCAGGCCCAGATCG 62.559 72.222 4.70 0.00 43.17 3.69
390 391 3.376218 CAGATCGGCTGGAGAAAGG 57.624 57.895 0.00 0.00 41.07 3.11
391 392 0.813210 CAGATCGGCTGGAGAAAGGC 60.813 60.000 0.00 0.00 41.07 4.35
396 397 2.467962 GGCTGGAGAAAGGCGTAAC 58.532 57.895 0.00 0.00 32.55 2.50
397 398 1.025113 GGCTGGAGAAAGGCGTAACC 61.025 60.000 0.00 0.00 39.61 2.85
409 410 3.974871 GGCGTAACCTTTTGTCTCAAA 57.025 42.857 0.00 0.00 34.51 2.69
410 411 4.295857 GGCGTAACCTTTTGTCTCAAAA 57.704 40.909 7.31 7.31 34.51 2.44
411 412 4.674475 GGCGTAACCTTTTGTCTCAAAAA 58.326 39.130 8.59 0.00 34.51 1.94
431 432 2.632643 AAAAAGCGTAACCCCGTCC 58.367 52.632 0.00 0.00 0.00 4.79
432 433 0.890542 AAAAAGCGTAACCCCGTCCC 60.891 55.000 0.00 0.00 0.00 4.46
433 434 2.753009 AAAAGCGTAACCCCGTCCCC 62.753 60.000 0.00 0.00 0.00 4.81
501 502 0.963225 GTCCGCTTCTATCCTCCCTC 59.037 60.000 0.00 0.00 0.00 4.30
505 506 1.822114 GCTTCTATCCTCCCTCCCGC 61.822 65.000 0.00 0.00 0.00 6.13
658 679 4.016706 CGAGTTTGGCCCCTCGGT 62.017 66.667 22.15 0.00 45.12 4.69
667 688 3.625897 CCCCTCGGTCTGCACACA 61.626 66.667 0.00 0.00 0.00 3.72
706 743 2.203625 GCTGGCCCCTTCAAACCA 60.204 61.111 0.00 0.00 0.00 3.67
707 744 1.610379 GCTGGCCCCTTCAAACCAT 60.610 57.895 0.00 0.00 0.00 3.55
709 746 0.972471 CTGGCCCCTTCAAACCATCC 60.972 60.000 0.00 0.00 0.00 3.51
710 747 1.078347 GGCCCCTTCAAACCATCCA 59.922 57.895 0.00 0.00 0.00 3.41
711 748 0.972471 GGCCCCTTCAAACCATCCAG 60.972 60.000 0.00 0.00 0.00 3.86
712 749 0.972471 GCCCCTTCAAACCATCCAGG 60.972 60.000 0.00 0.00 45.67 4.45
713 750 0.324645 CCCCTTCAAACCATCCAGGG 60.325 60.000 0.00 0.00 43.66 4.45
714 751 0.409484 CCCTTCAAACCATCCAGGGT 59.591 55.000 0.00 0.00 45.04 4.34
715 752 1.549203 CCTTCAAACCATCCAGGGTG 58.451 55.000 0.00 0.00 41.32 4.61
716 753 0.890683 CTTCAAACCATCCAGGGTGC 59.109 55.000 0.00 0.00 41.32 5.01
717 754 0.541764 TTCAAACCATCCAGGGTGCC 60.542 55.000 0.00 0.00 41.32 5.01
718 755 1.228831 CAAACCATCCAGGGTGCCA 60.229 57.895 0.00 0.00 41.32 4.92
723 760 0.107017 CCATCCAGGGTGCCAAGTAG 60.107 60.000 0.00 0.00 0.00 2.57
743 780 2.158519 AGGTTGGGTTTCGAGGTCAAAT 60.159 45.455 0.00 0.00 0.00 2.32
745 782 3.305131 GGTTGGGTTTCGAGGTCAAATTC 60.305 47.826 0.00 0.00 0.00 2.17
1134 1174 3.111939 CTCCTCACCGCCTACTCG 58.888 66.667 0.00 0.00 0.00 4.18
1187 1227 0.250989 GTGTTCGACCAAATCCCCCA 60.251 55.000 0.00 0.00 0.00 4.96
1239 1279 2.280186 GCTTATGTCTCCGCCGGG 60.280 66.667 1.90 0.00 0.00 5.73
1390 1430 1.472878 ACTCGCTCATCGTCAAAGCTA 59.527 47.619 0.00 0.00 39.67 3.32
1593 1633 0.327000 AGATGGAGAGGGAGGGGTTG 60.327 60.000 0.00 0.00 0.00 3.77
1599 1639 1.925972 GAGGGAGGGGTTGCTTCCT 60.926 63.158 0.00 0.00 35.82 3.36
1602 1642 1.575447 GGGAGGGGTTGCTTCCTGAT 61.575 60.000 0.00 0.00 32.74 2.90
1617 1657 0.027194 CTGATGAGGCAACATTCGCG 59.973 55.000 0.00 0.00 41.41 5.87
1648 1688 1.226717 GCGGTCGATGACTCCAGTC 60.227 63.158 0.00 0.00 44.97 3.51
1662 1702 4.597004 ACTCCAGTCATTTCTTGATGCAT 58.403 39.130 0.00 0.00 36.54 3.96
1715 1755 2.097466 CGGCATTGGGTTTGATAGTGTC 59.903 50.000 0.00 0.00 0.00 3.67
1789 1829 6.496743 AGAAGGATCTTTGATGAAATTGGGA 58.503 36.000 0.00 0.00 29.15 4.37
1877 1917 2.092429 AGGCGATGGGATTCTTTGCTAA 60.092 45.455 0.00 0.00 32.31 3.09
1891 1931 1.153597 TGCTAACATGATGCGAGCGG 61.154 55.000 12.67 0.00 32.78 5.52
2001 2041 2.978156 TGGTGATCAAGAAGGGCTTT 57.022 45.000 0.00 0.00 33.60 3.51
2106 2146 1.542915 TGCTTTGATTCCTTGCTGCTC 59.457 47.619 0.00 0.00 0.00 4.26
2148 2188 7.713507 TGGAATTCTATGTTAACTGGGTATTCG 59.286 37.037 7.22 0.00 0.00 3.34
2157 2197 3.573491 GGGTATTCGCAGCACGGC 61.573 66.667 0.00 0.00 43.89 5.68
2204 2244 6.647229 TCTTCAGATGTATGCAGTCAGAAAT 58.353 36.000 0.00 0.00 0.00 2.17
2411 2455 4.873259 GTCTTTTGAGGAGGCAGATAAGAC 59.127 45.833 0.00 0.00 35.18 3.01
2550 2602 2.284754 TTGTTGGCCTGATTACTGCA 57.715 45.000 3.32 0.00 0.00 4.41
2598 2650 5.294552 CGAAGGTTCAGAAATCCTCAATACC 59.705 44.000 0.00 0.00 0.00 2.73
2606 2658 6.603201 TCAGAAATCCTCAATACCATGGAAAC 59.397 38.462 21.47 0.00 31.87 2.78
3103 3155 1.728971 CCATCGACTTCTGTGAGCAAC 59.271 52.381 0.00 0.00 0.00 4.17
3105 3157 2.423926 TCGACTTCTGTGAGCAACTC 57.576 50.000 0.00 0.00 0.00 3.01
3124 3176 8.560374 AGCAACTCGCCTCTTAATATTTTTATC 58.440 33.333 0.00 0.00 44.04 1.75
3157 3209 6.884096 TTACATTTATTTGCCGCAATTCTG 57.116 33.333 6.64 5.38 0.00 3.02
3171 3223 5.476752 GCAATTCTGCTCTTCGAGTTTAT 57.523 39.130 0.00 0.00 45.74 1.40
3176 3228 4.669318 TCTGCTCTTCGAGTTTATAACCG 58.331 43.478 0.00 0.00 31.39 4.44
3182 3234 1.472082 TCGAGTTTATAACCGCCGTCA 59.528 47.619 0.00 0.00 0.00 4.35
3338 3390 0.737715 GCTAGTGGCAGTGAAGACCG 60.738 60.000 4.76 0.00 41.35 4.79
3360 3417 4.449068 CGCTGTGTCAATATATGGAAGGTC 59.551 45.833 0.00 0.00 0.00 3.85
3372 3429 6.764308 ATATGGAAGGTCATCTGTTTTGTG 57.236 37.500 0.00 0.00 0.00 3.33
3384 3441 4.887748 TCTGTTTTGTGTGCTTTGGAAAA 58.112 34.783 0.00 0.00 0.00 2.29
3398 3455 9.949174 GTGCTTTGGAAAATTCATGTTAAAATT 57.051 25.926 0.00 0.00 0.00 1.82
3479 3536 1.919240 ATTGAAACCCCGACCTTTCC 58.081 50.000 0.00 0.00 0.00 3.13
3481 3538 0.774908 TGAAACCCCGACCTTTCCAT 59.225 50.000 0.00 0.00 0.00 3.41
3484 3541 0.251608 AACCCCGACCTTTCCATTGG 60.252 55.000 0.00 0.00 0.00 3.16
3485 3542 1.382629 CCCCGACCTTTCCATTGGT 59.617 57.895 1.86 0.00 39.60 3.67
3486 3543 0.621609 CCCCGACCTTTCCATTGGTA 59.378 55.000 1.86 0.00 36.59 3.25
3487 3544 1.004979 CCCCGACCTTTCCATTGGTAA 59.995 52.381 1.86 0.00 36.59 2.85
3491 3548 4.384868 CCCGACCTTTCCATTGGTAATACT 60.385 45.833 1.86 0.00 36.59 2.12
3499 3558 9.014297 CCTTTCCATTGGTAATACTATCCATTC 57.986 37.037 1.86 0.00 0.00 2.67
3547 3606 5.688823 TGTCAAATTGTAGCGAAGTCAATG 58.311 37.500 0.00 0.00 33.04 2.82
3555 3614 1.066573 AGCGAAGTCAATGTCTCCCTG 60.067 52.381 0.00 0.00 0.00 4.45
3556 3615 1.363744 CGAAGTCAATGTCTCCCTGC 58.636 55.000 0.00 0.00 0.00 4.85
3575 3634 2.634940 TGCCTATGCTCCAGTCTATTCC 59.365 50.000 0.00 0.00 38.71 3.01
3616 3677 4.684724 AGTCTGTGATTGTACTTCCCCTA 58.315 43.478 0.00 0.00 0.00 3.53
3631 3692 1.272554 CCCTAAAGCGGGGACTTCCT 61.273 60.000 0.00 0.00 46.50 3.36
3632 3693 0.618981 CCTAAAGCGGGGACTTCCTT 59.381 55.000 0.00 0.00 35.95 3.36
3705 3767 4.156556 TGCAAACTGGAAAGATCACTATGC 59.843 41.667 0.00 0.00 0.00 3.14
3706 3768 4.156556 GCAAACTGGAAAGATCACTATGCA 59.843 41.667 0.00 0.00 0.00 3.96
3707 3769 5.163581 GCAAACTGGAAAGATCACTATGCAT 60.164 40.000 3.79 3.79 0.00 3.96
3708 3770 6.263344 CAAACTGGAAAGATCACTATGCATG 58.737 40.000 10.16 1.82 0.00 4.06
3709 3771 5.363562 ACTGGAAAGATCACTATGCATGA 57.636 39.130 10.16 0.00 0.00 3.07
3710 3772 5.938279 ACTGGAAAGATCACTATGCATGAT 58.062 37.500 10.16 5.05 39.54 2.45
3711 3773 7.071069 ACTGGAAAGATCACTATGCATGATA 57.929 36.000 10.16 0.00 36.92 2.15
3712 3774 6.933521 ACTGGAAAGATCACTATGCATGATAC 59.066 38.462 10.16 0.45 36.92 2.24
3713 3775 6.829849 TGGAAAGATCACTATGCATGATACA 58.170 36.000 10.16 0.00 36.92 2.29
3714 3776 7.281841 TGGAAAGATCACTATGCATGATACAA 58.718 34.615 10.16 0.00 36.92 2.41
3715 3777 7.774625 TGGAAAGATCACTATGCATGATACAAA 59.225 33.333 10.16 0.00 36.92 2.83
3716 3778 8.072567 GGAAAGATCACTATGCATGATACAAAC 58.927 37.037 10.16 0.00 36.92 2.93
3717 3779 7.502120 AAGATCACTATGCATGATACAAACC 57.498 36.000 10.16 0.00 36.92 3.27
3718 3780 6.594744 AGATCACTATGCATGATACAAACCA 58.405 36.000 10.16 0.00 36.92 3.67
3719 3781 7.229308 AGATCACTATGCATGATACAAACCAT 58.771 34.615 10.16 0.00 36.92 3.55
3720 3782 6.622833 TCACTATGCATGATACAAACCATG 57.377 37.500 10.16 0.00 42.13 3.66
3721 3783 6.355747 TCACTATGCATGATACAAACCATGA 58.644 36.000 10.16 0.00 41.88 3.07
3722 3784 6.260714 TCACTATGCATGATACAAACCATGAC 59.739 38.462 10.16 0.00 41.88 3.06
3723 3785 6.038492 CACTATGCATGATACAAACCATGACA 59.962 38.462 10.16 0.00 41.88 3.58
3724 3786 5.918426 ATGCATGATACAAACCATGACAA 57.082 34.783 0.00 0.00 41.88 3.18
3725 3787 5.313520 TGCATGATACAAACCATGACAAG 57.686 39.130 0.00 0.00 41.88 3.16
3726 3788 5.008980 TGCATGATACAAACCATGACAAGA 58.991 37.500 0.00 0.00 41.88 3.02
3727 3789 5.476254 TGCATGATACAAACCATGACAAGAA 59.524 36.000 0.00 0.00 41.88 2.52
3728 3790 6.032094 GCATGATACAAACCATGACAAGAAG 58.968 40.000 0.00 0.00 41.88 2.85
3729 3791 6.349611 GCATGATACAAACCATGACAAGAAGT 60.350 38.462 0.00 0.00 41.88 3.01
3730 3792 7.148255 GCATGATACAAACCATGACAAGAAGTA 60.148 37.037 0.00 0.00 41.88 2.24
3731 3793 8.729756 CATGATACAAACCATGACAAGAAGTAA 58.270 33.333 0.00 0.00 41.88 2.24
3732 3794 8.322906 TGATACAAACCATGACAAGAAGTAAG 57.677 34.615 0.00 0.00 0.00 2.34
3733 3795 8.154203 TGATACAAACCATGACAAGAAGTAAGA 58.846 33.333 0.00 0.00 0.00 2.10
3734 3796 8.918202 ATACAAACCATGACAAGAAGTAAGAA 57.082 30.769 0.00 0.00 0.00 2.52
3735 3797 7.823745 ACAAACCATGACAAGAAGTAAGAAT 57.176 32.000 0.00 0.00 0.00 2.40
3736 3798 7.651808 ACAAACCATGACAAGAAGTAAGAATG 58.348 34.615 0.00 0.00 0.00 2.67
3737 3799 7.502226 ACAAACCATGACAAGAAGTAAGAATGA 59.498 33.333 0.00 0.00 0.00 2.57
3738 3800 7.440523 AACCATGACAAGAAGTAAGAATGAC 57.559 36.000 0.00 0.00 0.00 3.06
3744 3806 4.999950 ACAAGAAGTAAGAATGACCTGCTG 59.000 41.667 0.00 0.00 0.00 4.41
3745 3807 5.221722 ACAAGAAGTAAGAATGACCTGCTGA 60.222 40.000 0.00 0.00 0.00 4.26
3750 3812 6.299805 AGTAAGAATGACCTGCTGATTGTA 57.700 37.500 0.00 0.00 0.00 2.41
3753 3815 6.690194 AAGAATGACCTGCTGATTGTATTC 57.310 37.500 0.00 0.00 0.00 1.75
3754 3816 5.999044 AGAATGACCTGCTGATTGTATTCT 58.001 37.500 0.00 0.00 0.00 2.40
3756 3818 7.568349 AGAATGACCTGCTGATTGTATTCTAA 58.432 34.615 0.00 0.00 33.34 2.10
3774 3836 6.515272 TTCTAACATTTGGATTCCTGCTTC 57.485 37.500 3.95 0.00 0.00 3.86
3778 3841 3.245371 ACATTTGGATTCCTGCTTCTCCA 60.245 43.478 3.95 0.00 36.02 3.86
3784 3847 3.614092 GATTCCTGCTTCTCCATTGACA 58.386 45.455 0.00 0.00 0.00 3.58
3788 3851 3.152341 CCTGCTTCTCCATTGACAAGTT 58.848 45.455 0.00 0.00 0.00 2.66
3820 3883 2.230750 AGCAGCTTCATTGGCTTTTCTC 59.769 45.455 0.00 0.00 38.03 2.87
3826 3889 2.436417 TCATTGGCTTTTCTCGGGAAG 58.564 47.619 0.00 0.00 32.61 3.46
3830 3893 0.960861 GGCTTTTCTCGGGAAGTGGG 60.961 60.000 0.00 0.00 32.61 4.61
3834 3897 0.035439 TTTCTCGGGAAGTGGGATGC 60.035 55.000 0.00 0.00 32.61 3.91
3843 3906 3.391296 GGGAAGTGGGATGCTAATCAGTA 59.609 47.826 0.00 0.00 34.17 2.74
3844 3907 4.141482 GGGAAGTGGGATGCTAATCAGTAA 60.141 45.833 0.00 0.00 34.17 2.24
3887 3950 8.621532 TTATGTCAAAGTTTGAGCTAGAATGT 57.378 30.769 18.56 0.95 41.01 2.71
3888 3951 6.304356 TGTCAAAGTTTGAGCTAGAATGTG 57.696 37.500 18.56 0.00 41.01 3.21
3917 3980 3.679389 CTCCAATGTAACTGCTTGGAGT 58.321 45.455 18.16 0.00 37.33 3.85
3918 3981 3.411446 TCCAATGTAACTGCTTGGAGTG 58.589 45.455 0.00 0.00 0.00 3.51
3919 3982 2.489329 CCAATGTAACTGCTTGGAGTGG 59.511 50.000 0.00 0.00 0.00 4.00
3920 3983 3.411446 CAATGTAACTGCTTGGAGTGGA 58.589 45.455 0.00 0.00 0.00 4.02
3921 3984 2.839486 TGTAACTGCTTGGAGTGGAG 57.161 50.000 0.00 0.00 0.00 3.86
3922 3985 2.325484 TGTAACTGCTTGGAGTGGAGA 58.675 47.619 0.00 0.00 0.00 3.71
3923 3986 2.300152 TGTAACTGCTTGGAGTGGAGAG 59.700 50.000 0.00 0.00 0.00 3.20
3924 3987 1.722034 AACTGCTTGGAGTGGAGAGA 58.278 50.000 0.00 0.00 0.00 3.10
3925 3988 1.722034 ACTGCTTGGAGTGGAGAGAA 58.278 50.000 0.00 0.00 0.00 2.87
3926 3989 1.622811 ACTGCTTGGAGTGGAGAGAAG 59.377 52.381 0.00 0.00 0.00 2.85
3927 3990 1.898472 CTGCTTGGAGTGGAGAGAAGA 59.102 52.381 0.00 0.00 0.00 2.87
3928 3991 2.500910 CTGCTTGGAGTGGAGAGAAGAT 59.499 50.000 0.00 0.00 0.00 2.40
3929 3992 3.703556 CTGCTTGGAGTGGAGAGAAGATA 59.296 47.826 0.00 0.00 0.00 1.98
3930 3993 4.293494 TGCTTGGAGTGGAGAGAAGATAT 58.707 43.478 0.00 0.00 0.00 1.63
3931 3994 4.343526 TGCTTGGAGTGGAGAGAAGATATC 59.656 45.833 0.00 0.00 0.00 1.63
3932 3995 4.343526 GCTTGGAGTGGAGAGAAGATATCA 59.656 45.833 5.32 0.00 0.00 2.15
3933 3996 5.011943 GCTTGGAGTGGAGAGAAGATATCAT 59.988 44.000 5.32 0.00 0.00 2.45
3934 3997 6.416631 TTGGAGTGGAGAGAAGATATCATG 57.583 41.667 5.32 0.00 0.00 3.07
3935 3998 5.462240 TGGAGTGGAGAGAAGATATCATGT 58.538 41.667 5.32 0.00 0.00 3.21
3936 3999 5.303845 TGGAGTGGAGAGAAGATATCATGTG 59.696 44.000 5.32 0.00 0.00 3.21
3937 4000 5.304101 GGAGTGGAGAGAAGATATCATGTGT 59.696 44.000 5.32 0.00 0.00 3.72
3938 4001 6.403866 AGTGGAGAGAAGATATCATGTGTC 57.596 41.667 5.32 0.00 0.00 3.67
3939 4002 6.135454 AGTGGAGAGAAGATATCATGTGTCT 58.865 40.000 5.32 3.22 0.00 3.41
3940 4003 6.610830 AGTGGAGAGAAGATATCATGTGTCTT 59.389 38.462 5.32 8.86 40.51 3.01
3941 4004 7.125507 AGTGGAGAGAAGATATCATGTGTCTTT 59.874 37.037 5.32 0.00 38.26 2.52
3942 4005 7.437862 GTGGAGAGAAGATATCATGTGTCTTTC 59.562 40.741 5.32 4.47 38.26 2.62
3943 4006 7.344093 TGGAGAGAAGATATCATGTGTCTTTCT 59.656 37.037 5.32 2.57 38.26 2.52
3944 4007 7.867403 GGAGAGAAGATATCATGTGTCTTTCTC 59.133 40.741 21.09 21.09 38.26 2.87
3945 4008 8.537728 AGAGAAGATATCATGTGTCTTTCTCT 57.462 34.615 17.43 17.43 38.26 3.10
3946 4009 8.980596 AGAGAAGATATCATGTGTCTTTCTCTT 58.019 33.333 17.43 7.76 38.20 2.85
3947 4010 8.945481 AGAAGATATCATGTGTCTTTCTCTTG 57.055 34.615 5.32 0.00 38.26 3.02
3948 4011 7.495279 AGAAGATATCATGTGTCTTTCTCTTGC 59.505 37.037 5.32 0.00 38.26 4.01
3949 4012 6.647229 AGATATCATGTGTCTTTCTCTTGCA 58.353 36.000 5.32 0.00 0.00 4.08
3950 4013 6.538021 AGATATCATGTGTCTTTCTCTTGCAC 59.462 38.462 5.32 0.00 0.00 4.57
3951 4014 4.077300 TCATGTGTCTTTCTCTTGCACT 57.923 40.909 0.00 0.00 0.00 4.40
3952 4015 3.811497 TCATGTGTCTTTCTCTTGCACTG 59.189 43.478 0.00 0.00 0.00 3.66
3953 4016 3.541996 TGTGTCTTTCTCTTGCACTGA 57.458 42.857 0.00 0.00 0.00 3.41
3954 4017 4.077300 TGTGTCTTTCTCTTGCACTGAT 57.923 40.909 0.00 0.00 0.00 2.90
3955 4018 5.213891 TGTGTCTTTCTCTTGCACTGATA 57.786 39.130 0.00 0.00 0.00 2.15
3956 4019 5.798132 TGTGTCTTTCTCTTGCACTGATAT 58.202 37.500 0.00 0.00 0.00 1.63
3957 4020 5.871524 TGTGTCTTTCTCTTGCACTGATATC 59.128 40.000 0.00 0.00 0.00 1.63
3958 4021 6.105333 GTGTCTTTCTCTTGCACTGATATCT 58.895 40.000 3.98 0.00 0.00 1.98
3959 4022 6.035866 GTGTCTTTCTCTTGCACTGATATCTG 59.964 42.308 7.98 7.98 0.00 2.90
3960 4023 6.071165 TGTCTTTCTCTTGCACTGATATCTGA 60.071 38.462 15.75 0.00 0.00 3.27
3961 4024 6.255453 GTCTTTCTCTTGCACTGATATCTGAC 59.745 42.308 15.75 8.16 0.00 3.51
3962 4025 5.929058 TTCTCTTGCACTGATATCTGACT 57.071 39.130 15.75 0.00 0.00 3.41
3963 4026 7.340487 TCTTTCTCTTGCACTGATATCTGACTA 59.660 37.037 15.75 4.56 0.00 2.59
3964 4027 7.594351 TTCTCTTGCACTGATATCTGACTAT 57.406 36.000 15.75 0.00 0.00 2.12
3965 4028 7.213216 TCTCTTGCACTGATATCTGACTATC 57.787 40.000 15.75 1.88 0.00 2.08
3966 4029 6.208402 TCTCTTGCACTGATATCTGACTATCC 59.792 42.308 15.75 0.00 0.00 2.59
3967 4030 4.773323 TGCACTGATATCTGACTATCCG 57.227 45.455 15.75 0.00 0.00 4.18
3968 4031 3.057245 TGCACTGATATCTGACTATCCGC 60.057 47.826 15.75 7.16 0.00 5.54
3969 4032 3.192422 GCACTGATATCTGACTATCCGCT 59.808 47.826 15.75 0.00 0.00 5.52
3970 4033 4.396478 GCACTGATATCTGACTATCCGCTA 59.604 45.833 15.75 0.00 0.00 4.26
3971 4034 5.675071 GCACTGATATCTGACTATCCGCTAC 60.675 48.000 15.75 0.00 0.00 3.58
3972 4035 5.412904 CACTGATATCTGACTATCCGCTACA 59.587 44.000 15.75 0.00 0.00 2.74
3973 4036 6.004574 ACTGATATCTGACTATCCGCTACAA 58.995 40.000 15.75 0.00 0.00 2.41
3974 4037 6.490381 ACTGATATCTGACTATCCGCTACAAA 59.510 38.462 15.75 0.00 0.00 2.83
3975 4038 6.914259 TGATATCTGACTATCCGCTACAAAG 58.086 40.000 3.98 0.00 0.00 2.77
3976 4039 6.490381 TGATATCTGACTATCCGCTACAAAGT 59.510 38.462 3.98 0.00 0.00 2.66
3977 4040 7.664318 TGATATCTGACTATCCGCTACAAAGTA 59.336 37.037 3.98 0.00 0.00 2.24
3978 4041 6.710597 ATCTGACTATCCGCTACAAAGTAA 57.289 37.500 0.00 0.00 0.00 2.24
3979 4042 6.519679 TCTGACTATCCGCTACAAAGTAAA 57.480 37.500 0.00 0.00 0.00 2.01
3980 4043 7.108841 TCTGACTATCCGCTACAAAGTAAAT 57.891 36.000 0.00 0.00 0.00 1.40
3981 4044 8.229253 TCTGACTATCCGCTACAAAGTAAATA 57.771 34.615 0.00 0.00 0.00 1.40
3982 4045 8.350722 TCTGACTATCCGCTACAAAGTAAATAG 58.649 37.037 0.00 0.00 0.00 1.73
3983 4046 7.431249 TGACTATCCGCTACAAAGTAAATAGG 58.569 38.462 0.00 0.00 0.00 2.57
3984 4047 7.286087 TGACTATCCGCTACAAAGTAAATAGGA 59.714 37.037 0.00 0.00 0.00 2.94
3985 4048 8.191534 ACTATCCGCTACAAAGTAAATAGGAT 57.808 34.615 0.00 0.00 39.12 3.24
3986 4049 8.088981 ACTATCCGCTACAAAGTAAATAGGATG 58.911 37.037 3.68 0.00 36.71 3.51
3987 4050 5.054477 TCCGCTACAAAGTAAATAGGATGC 58.946 41.667 0.00 0.00 0.00 3.91
3988 4051 4.814234 CCGCTACAAAGTAAATAGGATGCA 59.186 41.667 0.00 0.00 0.00 3.96
3989 4052 5.050091 CCGCTACAAAGTAAATAGGATGCAG 60.050 44.000 0.00 0.00 0.00 4.41
3990 4053 5.523916 CGCTACAAAGTAAATAGGATGCAGT 59.476 40.000 0.00 0.00 0.00 4.40
3991 4054 6.037172 CGCTACAAAGTAAATAGGATGCAGTT 59.963 38.462 0.00 0.00 0.00 3.16
3992 4055 7.189512 GCTACAAAGTAAATAGGATGCAGTTG 58.810 38.462 0.00 0.00 0.00 3.16
3993 4056 7.065803 GCTACAAAGTAAATAGGATGCAGTTGA 59.934 37.037 0.00 0.00 0.00 3.18
3994 4057 7.944729 ACAAAGTAAATAGGATGCAGTTGAT 57.055 32.000 0.00 0.00 0.00 2.57
3995 4058 7.765307 ACAAAGTAAATAGGATGCAGTTGATG 58.235 34.615 0.00 0.00 0.00 3.07
4007 4070 3.374220 CAGTTGATGCTTTCCTGCAAA 57.626 42.857 0.00 0.00 46.61 3.68
4008 4071 3.719924 CAGTTGATGCTTTCCTGCAAAA 58.280 40.909 0.00 0.00 46.61 2.44
4009 4072 3.739300 CAGTTGATGCTTTCCTGCAAAAG 59.261 43.478 6.52 6.52 46.61 2.27
4016 4079 3.950087 CTTTCCTGCAAAAGCAAAACC 57.050 42.857 0.00 0.00 30.10 3.27
4017 4080 3.534554 CTTTCCTGCAAAAGCAAAACCT 58.465 40.909 0.00 0.00 30.10 3.50
4018 4081 2.600470 TCCTGCAAAAGCAAAACCTG 57.400 45.000 0.00 0.00 0.00 4.00
4029 4092 3.658757 GCAAAACCTGCCAACATAGAA 57.341 42.857 0.00 0.00 46.13 2.10
4030 4093 3.578688 GCAAAACCTGCCAACATAGAAG 58.421 45.455 0.00 0.00 46.13 2.85
4031 4094 3.578688 CAAAACCTGCCAACATAGAAGC 58.421 45.455 0.00 0.00 0.00 3.86
4032 4095 1.839424 AACCTGCCAACATAGAAGCC 58.161 50.000 0.00 0.00 0.00 4.35
4033 4096 0.698238 ACCTGCCAACATAGAAGCCA 59.302 50.000 0.00 0.00 0.00 4.75
4034 4097 1.340405 ACCTGCCAACATAGAAGCCAG 60.340 52.381 0.00 0.00 0.00 4.85
4035 4098 1.340405 CCTGCCAACATAGAAGCCAGT 60.340 52.381 0.00 0.00 0.00 4.00
4036 4099 1.741706 CTGCCAACATAGAAGCCAGTG 59.258 52.381 0.00 0.00 0.00 3.66
4037 4100 0.453390 GCCAACATAGAAGCCAGTGC 59.547 55.000 0.00 0.00 37.95 4.40
4038 4101 1.825090 CCAACATAGAAGCCAGTGCA 58.175 50.000 0.00 0.00 41.13 4.57
4039 4102 2.372264 CCAACATAGAAGCCAGTGCAT 58.628 47.619 0.00 0.00 41.13 3.96
4040 4103 2.357009 CCAACATAGAAGCCAGTGCATC 59.643 50.000 0.00 0.00 41.13 3.91
4041 4104 3.276857 CAACATAGAAGCCAGTGCATCT 58.723 45.455 0.00 0.00 46.54 2.90
4042 4105 3.641434 ACATAGAAGCCAGTGCATCTT 57.359 42.857 0.00 0.00 42.60 2.40
4043 4106 3.539604 ACATAGAAGCCAGTGCATCTTC 58.460 45.455 10.86 10.86 42.60 2.87
4044 4107 3.199508 ACATAGAAGCCAGTGCATCTTCT 59.800 43.478 19.77 19.77 42.60 2.85
4045 4108 2.110901 AGAAGCCAGTGCATCTTCTG 57.889 50.000 17.04 8.39 42.60 3.02
4046 4109 1.627329 AGAAGCCAGTGCATCTTCTGA 59.373 47.619 17.04 0.00 42.60 3.27
4047 4110 2.239150 AGAAGCCAGTGCATCTTCTGAT 59.761 45.455 17.04 0.34 42.60 2.90
4048 4111 3.453717 AGAAGCCAGTGCATCTTCTGATA 59.546 43.478 17.04 0.00 42.60 2.15
4049 4112 3.920231 AGCCAGTGCATCTTCTGATAA 57.080 42.857 3.73 0.00 41.13 1.75
4050 4113 4.434545 AGCCAGTGCATCTTCTGATAAT 57.565 40.909 3.73 0.00 41.13 1.28
4051 4114 4.387598 AGCCAGTGCATCTTCTGATAATC 58.612 43.478 3.73 0.00 41.13 1.75
4052 4115 4.102838 AGCCAGTGCATCTTCTGATAATCT 59.897 41.667 3.73 0.00 41.13 2.40
4053 4116 4.213694 GCCAGTGCATCTTCTGATAATCTG 59.786 45.833 3.73 0.00 37.47 2.90
4054 4117 5.608449 CCAGTGCATCTTCTGATAATCTGA 58.392 41.667 3.73 0.00 34.02 3.27
4055 4118 6.231951 CCAGTGCATCTTCTGATAATCTGAT 58.768 40.000 3.73 0.00 34.02 2.90
4056 4119 6.147985 CCAGTGCATCTTCTGATAATCTGATG 59.852 42.308 3.73 0.00 35.69 3.07
4057 4120 6.147985 CAGTGCATCTTCTGATAATCTGATGG 59.852 42.308 0.00 0.00 33.89 3.51
4058 4121 6.042897 AGTGCATCTTCTGATAATCTGATGGA 59.957 38.462 0.00 0.00 33.89 3.41
4059 4122 6.709397 GTGCATCTTCTGATAATCTGATGGAA 59.291 38.462 0.00 0.00 34.94 3.53
4060 4123 7.390996 GTGCATCTTCTGATAATCTGATGGAAT 59.609 37.037 0.00 0.00 34.94 3.01
4061 4124 7.606839 TGCATCTTCTGATAATCTGATGGAATC 59.393 37.037 0.00 0.00 45.83 2.52
4073 4136 2.947852 GATGGAATCGTGAGGATACGG 58.052 52.381 0.00 0.00 43.85 4.02
4074 4137 2.061509 TGGAATCGTGAGGATACGGA 57.938 50.000 0.00 0.00 43.85 4.69
4075 4138 1.679680 TGGAATCGTGAGGATACGGAC 59.320 52.381 0.00 0.00 43.85 4.79
4076 4139 1.679680 GGAATCGTGAGGATACGGACA 59.320 52.381 0.00 0.00 43.85 4.02
4077 4140 2.100252 GGAATCGTGAGGATACGGACAA 59.900 50.000 0.00 0.00 43.85 3.18
4078 4141 2.865343 ATCGTGAGGATACGGACAAC 57.135 50.000 0.00 0.00 43.85 3.32
4079 4142 0.813184 TCGTGAGGATACGGACAACC 59.187 55.000 0.00 0.00 43.85 3.77
4080 4143 0.528924 CGTGAGGATACGGACAACCA 59.471 55.000 0.00 0.00 46.39 3.67
4081 4144 1.469251 CGTGAGGATACGGACAACCAG 60.469 57.143 0.00 0.00 46.39 4.00
4082 4145 0.535335 TGAGGATACGGACAACCAGC 59.465 55.000 0.00 0.00 46.39 4.85
4083 4146 0.179081 GAGGATACGGACAACCAGCC 60.179 60.000 0.00 0.00 46.39 4.85
4084 4147 0.907704 AGGATACGGACAACCAGCCA 60.908 55.000 0.00 0.00 46.39 4.75
4085 4148 0.180406 GGATACGGACAACCAGCCAT 59.820 55.000 0.00 0.00 35.59 4.40
4086 4149 1.414919 GGATACGGACAACCAGCCATA 59.585 52.381 0.00 0.00 35.59 2.74
4087 4150 2.158871 GGATACGGACAACCAGCCATAA 60.159 50.000 0.00 0.00 35.59 1.90
4088 4151 3.496160 GGATACGGACAACCAGCCATAAT 60.496 47.826 0.00 0.00 35.59 1.28
4089 4152 4.262721 GGATACGGACAACCAGCCATAATA 60.263 45.833 0.00 0.00 35.59 0.98
4090 4153 3.194005 ACGGACAACCAGCCATAATAG 57.806 47.619 0.00 0.00 35.59 1.73
4091 4154 2.158813 ACGGACAACCAGCCATAATAGG 60.159 50.000 0.00 0.00 35.59 2.57
4092 4155 2.810400 CGGACAACCAGCCATAATAGGG 60.810 54.545 0.00 0.00 35.59 3.53
4093 4156 2.441750 GGACAACCAGCCATAATAGGGA 59.558 50.000 0.00 0.00 35.97 4.20
4094 4157 3.074538 GGACAACCAGCCATAATAGGGAT 59.925 47.826 0.00 0.00 35.97 3.85
4095 4158 4.447762 GGACAACCAGCCATAATAGGGATT 60.448 45.833 0.00 0.00 35.97 3.01
4096 4159 5.222048 GGACAACCAGCCATAATAGGGATTA 60.222 44.000 0.00 0.00 35.97 1.75
4097 4160 5.880901 ACAACCAGCCATAATAGGGATTAG 58.119 41.667 0.00 0.00 31.02 1.73
4098 4161 4.576330 ACCAGCCATAATAGGGATTAGC 57.424 45.455 0.00 0.00 31.02 3.09
4099 4162 3.916349 ACCAGCCATAATAGGGATTAGCA 59.084 43.478 0.00 0.00 31.02 3.49
4100 4163 4.018960 ACCAGCCATAATAGGGATTAGCAG 60.019 45.833 0.00 0.00 31.02 4.24
4101 4164 4.018960 CCAGCCATAATAGGGATTAGCAGT 60.019 45.833 0.00 0.00 31.02 4.40
4102 4165 4.940046 CAGCCATAATAGGGATTAGCAGTG 59.060 45.833 0.00 0.00 31.02 3.66
4103 4166 4.846367 AGCCATAATAGGGATTAGCAGTGA 59.154 41.667 0.00 0.00 31.02 3.41
4104 4167 5.490357 AGCCATAATAGGGATTAGCAGTGAT 59.510 40.000 0.00 0.00 31.02 3.06
4105 4168 5.587844 GCCATAATAGGGATTAGCAGTGATG 59.412 44.000 0.00 0.00 31.02 3.07
4106 4169 6.577039 GCCATAATAGGGATTAGCAGTGATGA 60.577 42.308 0.00 0.00 31.02 2.92
4107 4170 7.046652 CCATAATAGGGATTAGCAGTGATGAG 58.953 42.308 0.00 0.00 31.02 2.90
4108 4171 5.495926 AATAGGGATTAGCAGTGATGAGG 57.504 43.478 0.00 0.00 0.00 3.86
4109 4172 3.051940 AGGGATTAGCAGTGATGAGGA 57.948 47.619 0.00 0.00 0.00 3.71
4110 4173 3.387962 AGGGATTAGCAGTGATGAGGAA 58.612 45.455 0.00 0.00 0.00 3.36
4111 4174 3.135530 AGGGATTAGCAGTGATGAGGAAC 59.864 47.826 0.00 0.00 0.00 3.62
4113 4176 4.384647 GGGATTAGCAGTGATGAGGAACTT 60.385 45.833 0.00 0.00 41.55 2.66
4114 4177 4.574013 GGATTAGCAGTGATGAGGAACTTG 59.426 45.833 0.00 0.00 41.55 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.782049 ACAAAAACCAAAAAGGAAAAACCAAA 58.218 26.923 0.00 0.00 41.22 3.28
1 2 7.348080 ACAAAAACCAAAAAGGAAAAACCAA 57.652 28.000 0.00 0.00 41.22 3.67
2 3 6.961360 ACAAAAACCAAAAAGGAAAAACCA 57.039 29.167 0.00 0.00 41.22 3.67
3 4 8.101654 AGTACAAAAACCAAAAAGGAAAAACC 57.898 30.769 0.00 0.00 41.22 3.27
4 5 9.953697 AAAGTACAAAAACCAAAAAGGAAAAAC 57.046 25.926 0.00 0.00 41.22 2.43
29 30 9.203421 GAAGAAACAGAAGAAAAACCAGAAAAA 57.797 29.630 0.00 0.00 0.00 1.94
30 31 7.817478 GGAAGAAACAGAAGAAAAACCAGAAAA 59.183 33.333 0.00 0.00 0.00 2.29
31 32 7.039363 TGGAAGAAACAGAAGAAAAACCAGAAA 60.039 33.333 0.00 0.00 0.00 2.52
32 33 6.435904 TGGAAGAAACAGAAGAAAAACCAGAA 59.564 34.615 0.00 0.00 0.00 3.02
33 34 5.949354 TGGAAGAAACAGAAGAAAAACCAGA 59.051 36.000 0.00 0.00 0.00 3.86
34 35 6.207691 TGGAAGAAACAGAAGAAAAACCAG 57.792 37.500 0.00 0.00 0.00 4.00
35 36 6.607198 AGATGGAAGAAACAGAAGAAAAACCA 59.393 34.615 0.00 0.00 0.00 3.67
36 37 7.043961 AGATGGAAGAAACAGAAGAAAAACC 57.956 36.000 0.00 0.00 0.00 3.27
37 38 8.932945 AAAGATGGAAGAAACAGAAGAAAAAC 57.067 30.769 0.00 0.00 0.00 2.43
38 39 9.369904 CAAAAGATGGAAGAAACAGAAGAAAAA 57.630 29.630 0.00 0.00 0.00 1.94
39 40 8.748412 TCAAAAGATGGAAGAAACAGAAGAAAA 58.252 29.630 0.00 0.00 0.00 2.29
40 41 8.292444 TCAAAAGATGGAAGAAACAGAAGAAA 57.708 30.769 0.00 0.00 0.00 2.52
41 42 7.880160 TCAAAAGATGGAAGAAACAGAAGAA 57.120 32.000 0.00 0.00 0.00 2.52
42 43 8.469309 AATCAAAAGATGGAAGAAACAGAAGA 57.531 30.769 0.00 0.00 0.00 2.87
43 44 9.189723 GAAATCAAAAGATGGAAGAAACAGAAG 57.810 33.333 0.00 0.00 0.00 2.85
44 45 8.694540 TGAAATCAAAAGATGGAAGAAACAGAA 58.305 29.630 0.00 0.00 0.00 3.02
45 46 8.137437 GTGAAATCAAAAGATGGAAGAAACAGA 58.863 33.333 0.00 0.00 0.00 3.41
46 47 8.139989 AGTGAAATCAAAAGATGGAAGAAACAG 58.860 33.333 0.00 0.00 0.00 3.16
47 48 8.010733 AGTGAAATCAAAAGATGGAAGAAACA 57.989 30.769 0.00 0.00 0.00 2.83
48 49 8.877808 AAGTGAAATCAAAAGATGGAAGAAAC 57.122 30.769 0.00 0.00 0.00 2.78
49 50 9.889128 AAAAGTGAAATCAAAAGATGGAAGAAA 57.111 25.926 0.00 0.00 0.00 2.52
50 51 9.533253 GAAAAGTGAAATCAAAAGATGGAAGAA 57.467 29.630 0.00 0.00 0.00 2.52
51 52 8.143835 GGAAAAGTGAAATCAAAAGATGGAAGA 58.856 33.333 0.00 0.00 0.00 2.87
52 53 7.115378 CGGAAAAGTGAAATCAAAAGATGGAAG 59.885 37.037 0.00 0.00 0.00 3.46
53 54 6.922957 CGGAAAAGTGAAATCAAAAGATGGAA 59.077 34.615 0.00 0.00 0.00 3.53
54 55 6.040391 ACGGAAAAGTGAAATCAAAAGATGGA 59.960 34.615 0.00 0.00 0.00 3.41
55 56 6.215845 ACGGAAAAGTGAAATCAAAAGATGG 58.784 36.000 0.00 0.00 0.00 3.51
56 57 7.698836 AACGGAAAAGTGAAATCAAAAGATG 57.301 32.000 0.00 0.00 0.00 2.90
57 58 8.716646 AAAACGGAAAAGTGAAATCAAAAGAT 57.283 26.923 0.00 0.00 0.00 2.40
58 59 8.032451 AGAAAACGGAAAAGTGAAATCAAAAGA 58.968 29.630 0.00 0.00 0.00 2.52
59 60 8.185003 AGAAAACGGAAAAGTGAAATCAAAAG 57.815 30.769 0.00 0.00 0.00 2.27
60 61 8.541133 AAGAAAACGGAAAAGTGAAATCAAAA 57.459 26.923 0.00 0.00 0.00 2.44
61 62 8.032451 AGAAGAAAACGGAAAAGTGAAATCAAA 58.968 29.630 0.00 0.00 0.00 2.69
62 63 7.543756 AGAAGAAAACGGAAAAGTGAAATCAA 58.456 30.769 0.00 0.00 0.00 2.57
63 64 7.095695 AGAAGAAAACGGAAAAGTGAAATCA 57.904 32.000 0.00 0.00 0.00 2.57
64 65 7.987268 AAGAAGAAAACGGAAAAGTGAAATC 57.013 32.000 0.00 0.00 0.00 2.17
65 66 7.491372 GGAAAGAAGAAAACGGAAAAGTGAAAT 59.509 33.333 0.00 0.00 0.00 2.17
66 67 6.809689 GGAAAGAAGAAAACGGAAAAGTGAAA 59.190 34.615 0.00 0.00 0.00 2.69
67 68 6.152154 AGGAAAGAAGAAAACGGAAAAGTGAA 59.848 34.615 0.00 0.00 0.00 3.18
68 69 5.650703 AGGAAAGAAGAAAACGGAAAAGTGA 59.349 36.000 0.00 0.00 0.00 3.41
69 70 5.891451 AGGAAAGAAGAAAACGGAAAAGTG 58.109 37.500 0.00 0.00 0.00 3.16
70 71 6.525578 AAGGAAAGAAGAAAACGGAAAAGT 57.474 33.333 0.00 0.00 0.00 2.66
71 72 7.544217 TGAAAAGGAAAGAAGAAAACGGAAAAG 59.456 33.333 0.00 0.00 0.00 2.27
72 73 7.379750 TGAAAAGGAAAGAAGAAAACGGAAAA 58.620 30.769 0.00 0.00 0.00 2.29
73 74 6.926313 TGAAAAGGAAAGAAGAAAACGGAAA 58.074 32.000 0.00 0.00 0.00 3.13
74 75 6.518208 TGAAAAGGAAAGAAGAAAACGGAA 57.482 33.333 0.00 0.00 0.00 4.30
75 76 6.546034 AGATGAAAAGGAAAGAAGAAAACGGA 59.454 34.615 0.00 0.00 0.00 4.69
76 77 6.739112 AGATGAAAAGGAAAGAAGAAAACGG 58.261 36.000 0.00 0.00 0.00 4.44
77 78 8.634475 AAAGATGAAAAGGAAAGAAGAAAACG 57.366 30.769 0.00 0.00 0.00 3.60
120 121 9.689976 TTCACCACTTATTTGAACATGTTTATG 57.310 29.630 13.36 6.03 40.24 1.90
155 156 8.779303 TCGTGTTGTAAAAAGATGTCATGTATT 58.221 29.630 0.00 0.00 0.00 1.89
156 157 8.317891 TCGTGTTGTAAAAAGATGTCATGTAT 57.682 30.769 0.00 0.00 0.00 2.29
157 158 7.716768 TCGTGTTGTAAAAAGATGTCATGTA 57.283 32.000 0.00 0.00 0.00 2.29
158 159 6.612247 TCGTGTTGTAAAAAGATGTCATGT 57.388 33.333 0.00 0.00 0.00 3.21
159 160 7.297391 TCATCGTGTTGTAAAAAGATGTCATG 58.703 34.615 9.49 0.00 35.84 3.07
160 161 7.433708 TCATCGTGTTGTAAAAAGATGTCAT 57.566 32.000 9.49 0.00 35.84 3.06
161 162 6.852858 TCATCGTGTTGTAAAAAGATGTCA 57.147 33.333 9.49 0.00 35.84 3.58
162 163 7.129622 TGTTCATCGTGTTGTAAAAAGATGTC 58.870 34.615 9.49 6.32 35.84 3.06
163 164 7.022055 TGTTCATCGTGTTGTAAAAAGATGT 57.978 32.000 9.49 0.00 35.84 3.06
164 165 8.506140 AATGTTCATCGTGTTGTAAAAAGATG 57.494 30.769 4.85 4.85 35.76 2.90
165 166 9.528018 AAAATGTTCATCGTGTTGTAAAAAGAT 57.472 25.926 0.00 0.00 0.00 2.40
166 167 8.918961 AAAATGTTCATCGTGTTGTAAAAAGA 57.081 26.923 0.00 0.00 0.00 2.52
167 168 8.802856 TGAAAATGTTCATCGTGTTGTAAAAAG 58.197 29.630 0.00 0.00 38.88 2.27
168 169 8.689251 TGAAAATGTTCATCGTGTTGTAAAAA 57.311 26.923 0.00 0.00 38.88 1.94
169 170 8.689251 TTGAAAATGTTCATCGTGTTGTAAAA 57.311 26.923 0.00 0.00 43.29 1.52
170 171 8.864069 ATTGAAAATGTTCATCGTGTTGTAAA 57.136 26.923 0.00 0.00 43.29 2.01
171 172 8.864069 AATTGAAAATGTTCATCGTGTTGTAA 57.136 26.923 0.00 0.00 43.29 2.41
172 173 8.864069 AAATTGAAAATGTTCATCGTGTTGTA 57.136 26.923 0.00 0.00 43.29 2.41
173 174 7.769272 AAATTGAAAATGTTCATCGTGTTGT 57.231 28.000 0.00 0.00 43.29 3.32
174 175 8.935941 CAAAAATTGAAAATGTTCATCGTGTTG 58.064 29.630 0.00 0.00 43.29 3.33
175 176 8.877779 TCAAAAATTGAAAATGTTCATCGTGTT 58.122 25.926 0.00 0.00 43.29 3.32
176 177 8.327429 GTCAAAAATTGAAAATGTTCATCGTGT 58.673 29.630 0.00 0.00 43.29 4.49
177 178 8.326713 TGTCAAAAATTGAAAATGTTCATCGTG 58.673 29.630 0.00 0.00 43.29 4.35
178 179 8.417780 TGTCAAAAATTGAAAATGTTCATCGT 57.582 26.923 0.00 0.00 43.29 3.73
179 180 8.754096 TCTGTCAAAAATTGAAAATGTTCATCG 58.246 29.630 0.00 0.00 43.29 3.84
180 181 9.853921 GTCTGTCAAAAATTGAAAATGTTCATC 57.146 29.630 0.00 0.00 43.29 2.92
181 182 9.381033 TGTCTGTCAAAAATTGAAAATGTTCAT 57.619 25.926 0.00 0.00 43.29 2.57
182 183 8.768957 TGTCTGTCAAAAATTGAAAATGTTCA 57.231 26.923 0.00 0.00 42.15 3.18
258 259 9.980780 GGAAAATTCGAAAACATTTTCTTGAAA 57.019 25.926 23.57 5.12 44.03 2.69
259 260 9.377312 AGGAAAATTCGAAAACATTTTCTTGAA 57.623 25.926 23.57 11.00 44.03 2.69
260 261 8.940768 AGGAAAATTCGAAAACATTTTCTTGA 57.059 26.923 23.57 3.79 44.03 3.02
311 312 5.121298 GCTCGACCGAATAACCTTAGTTTTT 59.879 40.000 0.00 0.00 37.42 1.94
312 313 4.628766 GCTCGACCGAATAACCTTAGTTTT 59.371 41.667 0.00 0.00 37.42 2.43
313 314 4.081807 AGCTCGACCGAATAACCTTAGTTT 60.082 41.667 0.00 0.00 37.42 2.66
314 315 3.446516 AGCTCGACCGAATAACCTTAGTT 59.553 43.478 0.00 0.00 40.15 2.24
315 316 3.022406 AGCTCGACCGAATAACCTTAGT 58.978 45.455 0.00 0.00 0.00 2.24
316 317 3.712091 AGCTCGACCGAATAACCTTAG 57.288 47.619 0.00 0.00 0.00 2.18
317 318 3.429822 CCAAGCTCGACCGAATAACCTTA 60.430 47.826 0.00 0.00 0.00 2.69
318 319 2.618053 CAAGCTCGACCGAATAACCTT 58.382 47.619 0.00 0.00 0.00 3.50
319 320 1.134788 CCAAGCTCGACCGAATAACCT 60.135 52.381 0.00 0.00 0.00 3.50
320 321 1.287425 CCAAGCTCGACCGAATAACC 58.713 55.000 0.00 0.00 0.00 2.85
321 322 1.287425 CCCAAGCTCGACCGAATAAC 58.713 55.000 0.00 0.00 0.00 1.89
322 323 0.177141 CCCCAAGCTCGACCGAATAA 59.823 55.000 0.00 0.00 0.00 1.40
323 324 1.682451 CCCCCAAGCTCGACCGAATA 61.682 60.000 0.00 0.00 0.00 1.75
324 325 2.584608 CCCCAAGCTCGACCGAAT 59.415 61.111 0.00 0.00 0.00 3.34
325 326 3.702048 CCCCCAAGCTCGACCGAA 61.702 66.667 0.00 0.00 0.00 4.30
326 327 2.866523 ATACCCCCAAGCTCGACCGA 62.867 60.000 0.00 0.00 0.00 4.69
327 328 1.968050 AATACCCCCAAGCTCGACCG 61.968 60.000 0.00 0.00 0.00 4.79
328 329 0.255033 AAATACCCCCAAGCTCGACC 59.745 55.000 0.00 0.00 0.00 4.79
329 330 1.379527 CAAATACCCCCAAGCTCGAC 58.620 55.000 0.00 0.00 0.00 4.20
330 331 0.393808 GCAAATACCCCCAAGCTCGA 60.394 55.000 0.00 0.00 0.00 4.04
331 332 1.384222 GGCAAATACCCCCAAGCTCG 61.384 60.000 0.00 0.00 0.00 5.03
332 333 1.043116 GGGCAAATACCCCCAAGCTC 61.043 60.000 0.00 0.00 45.00 4.09
333 334 1.001631 GGGCAAATACCCCCAAGCT 59.998 57.895 0.00 0.00 45.00 3.74
334 335 3.628989 GGGCAAATACCCCCAAGC 58.371 61.111 0.00 0.00 45.00 4.01
341 342 1.685180 GGAAGGAGGTGGGCAAATACC 60.685 57.143 0.00 0.00 37.23 2.73
342 343 1.005450 TGGAAGGAGGTGGGCAAATAC 59.995 52.381 0.00 0.00 0.00 1.89
343 344 1.284785 CTGGAAGGAGGTGGGCAAATA 59.715 52.381 0.00 0.00 0.00 1.40
344 345 0.040204 CTGGAAGGAGGTGGGCAAAT 59.960 55.000 0.00 0.00 0.00 2.32
345 346 1.460255 CTGGAAGGAGGTGGGCAAA 59.540 57.895 0.00 0.00 0.00 3.68
346 347 3.170362 CTGGAAGGAGGTGGGCAA 58.830 61.111 0.00 0.00 0.00 4.52
347 348 3.650950 GCTGGAAGGAGGTGGGCA 61.651 66.667 0.00 0.00 0.00 5.36
348 349 4.432741 GGCTGGAAGGAGGTGGGC 62.433 72.222 0.00 0.00 0.00 5.36
349 350 3.732849 GGGCTGGAAGGAGGTGGG 61.733 72.222 0.00 0.00 0.00 4.61
350 351 2.935481 TGGGCTGGAAGGAGGTGG 60.935 66.667 0.00 0.00 0.00 4.61
351 352 2.673523 CTGGGCTGGAAGGAGGTG 59.326 66.667 0.00 0.00 0.00 4.00
352 353 2.612115 CCTGGGCTGGAAGGAGGT 60.612 66.667 0.00 0.00 35.40 3.85
353 354 4.120755 GCCTGGGCTGGAAGGAGG 62.121 72.222 4.12 0.00 35.40 4.30
354 355 4.120755 GGCCTGGGCTGGAAGGAG 62.121 72.222 13.80 0.00 41.60 3.69
357 358 4.437587 CTGGGCCTGGGCTGGAAG 62.438 72.222 20.47 8.98 41.60 3.46
359 360 4.765970 ATCTGGGCCTGGGCTGGA 62.766 66.667 20.47 17.25 41.60 3.86
360 361 4.201122 GATCTGGGCCTGGGCTGG 62.201 72.222 20.47 12.67 41.60 4.85
361 362 4.559063 CGATCTGGGCCTGGGCTG 62.559 72.222 20.47 13.07 41.60 4.85
372 373 0.813210 GCCTTTCTCCAGCCGATCTG 60.813 60.000 0.00 0.00 42.49 2.90
373 374 1.524482 GCCTTTCTCCAGCCGATCT 59.476 57.895 0.00 0.00 0.00 2.75
374 375 1.884926 CGCCTTTCTCCAGCCGATC 60.885 63.158 0.00 0.00 0.00 3.69
375 376 1.327690 TACGCCTTTCTCCAGCCGAT 61.328 55.000 0.00 0.00 0.00 4.18
376 377 1.537814 TTACGCCTTTCTCCAGCCGA 61.538 55.000 0.00 0.00 0.00 5.54
377 378 1.079405 TTACGCCTTTCTCCAGCCG 60.079 57.895 0.00 0.00 0.00 5.52
378 379 1.025113 GGTTACGCCTTTCTCCAGCC 61.025 60.000 0.00 0.00 0.00 4.85
379 380 2.467962 GGTTACGCCTTTCTCCAGC 58.532 57.895 0.00 0.00 0.00 4.85
389 390 3.974871 TTTGAGACAAAAGGTTACGCC 57.025 42.857 0.00 0.00 37.58 5.68
413 414 0.890542 GGGACGGGGTTACGCTTTTT 60.891 55.000 0.00 0.00 37.37 1.94
414 415 1.302752 GGGACGGGGTTACGCTTTT 60.303 57.895 0.00 0.00 37.37 2.27
415 416 2.348620 GGGACGGGGTTACGCTTT 59.651 61.111 0.00 0.00 37.37 3.51
416 417 3.709633 GGGGACGGGGTTACGCTT 61.710 66.667 0.00 0.00 37.37 4.68
428 429 1.450312 CAGAGACATTGCCGGGGAC 60.450 63.158 2.18 0.00 0.00 4.46
429 430 2.989639 CAGAGACATTGCCGGGGA 59.010 61.111 2.18 0.00 0.00 4.81
430 431 2.825836 GCAGAGACATTGCCGGGG 60.826 66.667 2.18 0.00 35.54 5.73
431 432 1.817099 GAGCAGAGACATTGCCGGG 60.817 63.158 2.18 0.00 42.48 5.73
432 433 0.809241 GAGAGCAGAGACATTGCCGG 60.809 60.000 0.00 0.00 42.48 6.13
433 434 0.175302 AGAGAGCAGAGACATTGCCG 59.825 55.000 0.00 0.00 42.48 5.69
434 435 2.278854 GAAGAGAGCAGAGACATTGCC 58.721 52.381 0.00 0.00 42.48 4.52
435 436 2.278854 GGAAGAGAGCAGAGACATTGC 58.721 52.381 0.00 0.00 41.83 3.56
436 437 3.260740 GTGGAAGAGAGCAGAGACATTG 58.739 50.000 0.00 0.00 0.00 2.82
437 438 2.094286 CGTGGAAGAGAGCAGAGACATT 60.094 50.000 0.00 0.00 0.00 2.71
438 439 1.476085 CGTGGAAGAGAGCAGAGACAT 59.524 52.381 0.00 0.00 0.00 3.06
439 440 0.884514 CGTGGAAGAGAGCAGAGACA 59.115 55.000 0.00 0.00 0.00 3.41
440 441 0.457681 GCGTGGAAGAGAGCAGAGAC 60.458 60.000 0.00 0.00 0.00 3.36
441 442 1.599606 GGCGTGGAAGAGAGCAGAGA 61.600 60.000 0.00 0.00 0.00 3.10
442 443 1.153667 GGCGTGGAAGAGAGCAGAG 60.154 63.158 0.00 0.00 0.00 3.35
468 469 4.816984 GGACGGAGGAGCGAGGGA 62.817 72.222 0.00 0.00 0.00 4.20
545 546 1.406069 GCGGCTCTCTTTCTTCCATGA 60.406 52.381 0.00 0.00 0.00 3.07
650 671 3.596066 CTGTGTGCAGACCGAGGGG 62.596 68.421 12.00 0.00 45.28 4.79
654 675 4.662961 CCGCTGTGTGCAGACCGA 62.663 66.667 12.00 0.00 45.28 4.69
688 725 2.097978 ATGGTTTGAAGGGGCCAGCT 62.098 55.000 4.39 0.00 34.18 4.24
694 731 0.324645 CCCTGGATGGTTTGAAGGGG 60.325 60.000 0.00 0.00 43.40 4.79
696 733 1.549203 CACCCTGGATGGTTTGAAGG 58.451 55.000 0.00 0.00 36.12 3.46
698 735 0.541764 GGCACCCTGGATGGTTTGAA 60.542 55.000 0.00 0.00 36.12 2.69
706 743 0.550147 ACCTACTTGGCACCCTGGAT 60.550 55.000 0.00 0.00 40.22 3.41
707 744 0.770557 AACCTACTTGGCACCCTGGA 60.771 55.000 0.00 0.00 40.22 3.86
709 746 0.609131 CCAACCTACTTGGCACCCTG 60.609 60.000 0.00 0.00 43.37 4.45
710 747 1.767692 CCAACCTACTTGGCACCCT 59.232 57.895 0.00 0.00 43.37 4.34
711 748 4.415783 CCAACCTACTTGGCACCC 57.584 61.111 0.00 0.00 43.37 4.61
717 754 2.224450 ACCTCGAAACCCAACCTACTTG 60.224 50.000 0.00 0.00 0.00 3.16
718 755 2.038164 GACCTCGAAACCCAACCTACTT 59.962 50.000 0.00 0.00 0.00 2.24
723 760 1.682740 TTTGACCTCGAAACCCAACC 58.317 50.000 0.00 0.00 0.00 3.77
1024 1061 2.436646 GATGGTGAGGTGGTGGCG 60.437 66.667 0.00 0.00 0.00 5.69
1027 1064 2.436646 GGCGATGGTGAGGTGGTG 60.437 66.667 0.00 0.00 0.00 4.17
1028 1065 4.082523 CGGCGATGGTGAGGTGGT 62.083 66.667 0.00 0.00 0.00 4.16
1325 1365 4.790962 CCATGGCAGCAGCGGAGT 62.791 66.667 0.00 0.00 43.41 3.85
1390 1430 2.045926 GACATTGTCGGCCAGGCT 60.046 61.111 12.43 0.00 0.00 4.58
1464 1504 2.495366 TTCCATCGAACACCCGACGG 62.495 60.000 6.99 6.99 42.57 4.79
1524 1564 2.335681 TCCCAGACTCCACATAACCA 57.664 50.000 0.00 0.00 0.00 3.67
1561 1601 2.106338 TCTCCATCTCAACAAACAGCCA 59.894 45.455 0.00 0.00 0.00 4.75
1562 1602 2.746362 CTCTCCATCTCAACAAACAGCC 59.254 50.000 0.00 0.00 0.00 4.85
1593 1633 1.760192 ATGTTGCCTCATCAGGAAGC 58.240 50.000 0.00 0.00 43.65 3.86
1599 1639 1.368345 CCGCGAATGTTGCCTCATCA 61.368 55.000 8.23 0.00 0.00 3.07
1602 1642 3.430862 GCCGCGAATGTTGCCTCA 61.431 61.111 8.23 0.00 0.00 3.86
1662 1702 1.005097 ACAATCTTCCCATGCAGCTGA 59.995 47.619 20.43 2.70 0.00 4.26
1740 1780 4.702274 GCCAGGGCCCCACATTGT 62.702 66.667 21.43 0.00 34.56 2.71
1789 1829 5.044624 TCCATGAGATCAAATCCCTTCTGTT 60.045 40.000 0.00 0.00 0.00 3.16
1877 1917 2.512286 CACCCGCTCGCATCATGT 60.512 61.111 0.00 0.00 0.00 3.21
1891 1931 2.359230 GTCAGGCTGCACTCCACC 60.359 66.667 10.34 0.00 0.00 4.61
2001 2041 2.917933 CAAACAGGTGTGACTCCTTCA 58.082 47.619 2.98 0.00 32.37 3.02
2106 2146 1.185618 TCCAGGAGACGGTGTCCTTG 61.186 60.000 23.05 19.60 42.12 3.61
2157 2197 1.022982 TCAAGGCATCAGCGCTCAAG 61.023 55.000 7.13 0.00 43.41 3.02
2204 2244 8.414003 AGAATGCATACTCGTCAGTTCTAATAA 58.586 33.333 0.00 0.00 33.62 1.40
2411 2455 0.107945 GTTCCAGGGCACAGAGCTAG 60.108 60.000 0.00 0.00 44.79 3.42
2480 2532 4.015084 CTCCAGCATCTCATTGAAAAGGT 58.985 43.478 0.00 0.00 0.00 3.50
2484 2536 3.361281 AGCTCCAGCATCTCATTGAAA 57.639 42.857 0.48 0.00 45.16 2.69
2598 2650 6.605119 AGGAATTCCATACCTAGTTTCCATG 58.395 40.000 26.22 0.00 38.89 3.66
2606 2658 5.140747 CCGAAGAGGAATTCCATACCTAG 57.859 47.826 26.22 10.59 45.00 3.02
2658 2710 2.286808 TGCCCAGCCCTCCCATAA 60.287 61.111 0.00 0.00 0.00 1.90
2900 2952 8.695456 TGCTTAATCCTTTATTCTTCATTTCCC 58.305 33.333 0.00 0.00 0.00 3.97
3002 3054 9.109246 TCAACATCTCATATATTTCCTCCATCT 57.891 33.333 0.00 0.00 0.00 2.90
3037 3089 4.067192 AGCTGCATGGGAAAATTTTGAAC 58.933 39.130 8.47 0.00 0.00 3.18
3065 3117 2.297701 TGGCTCCACTTGTTTCTTGAC 58.702 47.619 0.00 0.00 0.00 3.18
3124 3176 9.796062 GCGGCAAATAAATGTAAAATGATAATG 57.204 29.630 0.00 0.00 0.00 1.90
3171 3223 2.995258 GTGAATAAACTGACGGCGGTTA 59.005 45.455 17.68 4.31 42.66 2.85
3176 3228 2.546368 TGTGTGTGAATAAACTGACGGC 59.454 45.455 0.00 0.00 0.00 5.68
3182 3234 9.859427 CCAAAATATCATGTGTGTGAATAAACT 57.141 29.630 0.00 0.00 0.00 2.66
3338 3390 5.368145 TGACCTTCCATATATTGACACAGC 58.632 41.667 0.00 0.00 0.00 4.40
3341 3397 7.220030 ACAGATGACCTTCCATATATTGACAC 58.780 38.462 0.00 0.00 0.00 3.67
3360 3417 4.044336 TCCAAAGCACACAAAACAGATG 57.956 40.909 0.00 0.00 0.00 2.90
3372 3429 9.949174 AATTTTAACATGAATTTTCCAAAGCAC 57.051 25.926 0.00 0.00 0.00 4.40
3448 3505 6.149807 GTCGGGGTTTCAATAGTTGTTCAATA 59.850 38.462 0.00 0.00 0.00 1.90
3455 3512 3.067684 AGGTCGGGGTTTCAATAGTTG 57.932 47.619 0.00 0.00 0.00 3.16
3460 3517 1.146152 TGGAAAGGTCGGGGTTTCAAT 59.854 47.619 6.62 0.00 34.85 2.57
3527 3586 5.931532 AGACATTGACTTCGCTACAATTTG 58.068 37.500 0.00 0.00 32.92 2.32
3531 3590 3.585862 GGAGACATTGACTTCGCTACAA 58.414 45.455 0.00 0.00 0.00 2.41
3535 3594 1.066573 CAGGGAGACATTGACTTCGCT 60.067 52.381 0.00 0.00 0.00 4.93
3537 3596 1.363744 GCAGGGAGACATTGACTTCG 58.636 55.000 0.00 0.00 0.00 3.79
3538 3597 1.280421 AGGCAGGGAGACATTGACTTC 59.720 52.381 0.00 0.00 31.45 3.01
3547 3606 1.050988 TGGAGCATAGGCAGGGAGAC 61.051 60.000 0.67 0.00 44.61 3.36
3555 3614 2.634940 TGGAATAGACTGGAGCATAGGC 59.365 50.000 0.00 0.00 41.61 3.93
3556 3615 4.963318 TTGGAATAGACTGGAGCATAGG 57.037 45.455 0.00 0.00 0.00 2.57
3616 3677 4.524053 CTTATAAAGGAAGTCCCCGCTTT 58.476 43.478 0.00 0.00 36.42 3.51
3705 3767 7.149569 ACTTCTTGTCATGGTTTGTATCATG 57.850 36.000 0.00 0.00 41.35 3.07
3706 3768 8.862325 TTACTTCTTGTCATGGTTTGTATCAT 57.138 30.769 0.00 0.00 0.00 2.45
3707 3769 8.154203 TCTTACTTCTTGTCATGGTTTGTATCA 58.846 33.333 0.00 0.00 0.00 2.15
3708 3770 8.547967 TCTTACTTCTTGTCATGGTTTGTATC 57.452 34.615 0.00 0.00 0.00 2.24
3709 3771 8.918202 TTCTTACTTCTTGTCATGGTTTGTAT 57.082 30.769 0.00 0.00 0.00 2.29
3710 3772 8.783093 CATTCTTACTTCTTGTCATGGTTTGTA 58.217 33.333 0.00 0.00 0.00 2.41
3711 3773 7.502226 TCATTCTTACTTCTTGTCATGGTTTGT 59.498 33.333 0.00 0.00 0.00 2.83
3712 3774 7.805071 GTCATTCTTACTTCTTGTCATGGTTTG 59.195 37.037 0.00 0.00 0.00 2.93
3713 3775 7.040409 GGTCATTCTTACTTCTTGTCATGGTTT 60.040 37.037 0.00 0.00 0.00 3.27
3714 3776 6.431234 GGTCATTCTTACTTCTTGTCATGGTT 59.569 38.462 0.00 0.00 0.00 3.67
3715 3777 5.940470 GGTCATTCTTACTTCTTGTCATGGT 59.060 40.000 0.00 0.00 0.00 3.55
3716 3778 6.093219 CAGGTCATTCTTACTTCTTGTCATGG 59.907 42.308 0.00 0.00 0.00 3.66
3717 3779 6.402983 GCAGGTCATTCTTACTTCTTGTCATG 60.403 42.308 0.00 0.00 0.00 3.07
3718 3780 5.645497 GCAGGTCATTCTTACTTCTTGTCAT 59.355 40.000 0.00 0.00 0.00 3.06
3719 3781 4.997395 GCAGGTCATTCTTACTTCTTGTCA 59.003 41.667 0.00 0.00 0.00 3.58
3720 3782 5.121454 CAGCAGGTCATTCTTACTTCTTGTC 59.879 44.000 0.00 0.00 0.00 3.18
3721 3783 4.999950 CAGCAGGTCATTCTTACTTCTTGT 59.000 41.667 0.00 0.00 0.00 3.16
3722 3784 5.240891 TCAGCAGGTCATTCTTACTTCTTG 58.759 41.667 0.00 0.00 0.00 3.02
3723 3785 5.489792 TCAGCAGGTCATTCTTACTTCTT 57.510 39.130 0.00 0.00 0.00 2.52
3724 3786 5.690464 ATCAGCAGGTCATTCTTACTTCT 57.310 39.130 0.00 0.00 0.00 2.85
3725 3787 5.645497 ACAATCAGCAGGTCATTCTTACTTC 59.355 40.000 0.00 0.00 0.00 3.01
3726 3788 5.564550 ACAATCAGCAGGTCATTCTTACTT 58.435 37.500 0.00 0.00 0.00 2.24
3727 3789 5.171339 ACAATCAGCAGGTCATTCTTACT 57.829 39.130 0.00 0.00 0.00 2.24
3728 3790 7.497249 AGAATACAATCAGCAGGTCATTCTTAC 59.503 37.037 0.00 0.00 29.52 2.34
3729 3791 7.568349 AGAATACAATCAGCAGGTCATTCTTA 58.432 34.615 0.00 0.00 29.52 2.10
3730 3792 6.421485 AGAATACAATCAGCAGGTCATTCTT 58.579 36.000 0.00 0.00 29.52 2.52
3731 3793 5.999044 AGAATACAATCAGCAGGTCATTCT 58.001 37.500 0.00 0.00 0.00 2.40
3732 3794 7.280876 TGTTAGAATACAATCAGCAGGTCATTC 59.719 37.037 0.00 0.00 0.00 2.67
3733 3795 7.112122 TGTTAGAATACAATCAGCAGGTCATT 58.888 34.615 0.00 0.00 0.00 2.57
3734 3796 6.653020 TGTTAGAATACAATCAGCAGGTCAT 58.347 36.000 0.00 0.00 0.00 3.06
3735 3797 6.048732 TGTTAGAATACAATCAGCAGGTCA 57.951 37.500 0.00 0.00 0.00 4.02
3736 3798 7.559590 AATGTTAGAATACAATCAGCAGGTC 57.440 36.000 0.00 0.00 0.00 3.85
3737 3799 7.148018 CCAAATGTTAGAATACAATCAGCAGGT 60.148 37.037 0.00 0.00 0.00 4.00
3738 3800 7.067372 TCCAAATGTTAGAATACAATCAGCAGG 59.933 37.037 0.00 0.00 0.00 4.85
3744 3806 9.956720 CAGGAATCCAAATGTTAGAATACAATC 57.043 33.333 0.61 0.00 0.00 2.67
3745 3807 8.416329 GCAGGAATCCAAATGTTAGAATACAAT 58.584 33.333 0.61 0.00 0.00 2.71
3750 3812 6.894103 AGAAGCAGGAATCCAAATGTTAGAAT 59.106 34.615 0.61 0.00 0.00 2.40
3753 3815 5.067023 GGAGAAGCAGGAATCCAAATGTTAG 59.933 44.000 0.61 0.00 0.00 2.34
3754 3816 4.949856 GGAGAAGCAGGAATCCAAATGTTA 59.050 41.667 0.61 0.00 0.00 2.41
3756 3818 3.245371 TGGAGAAGCAGGAATCCAAATGT 60.245 43.478 0.61 0.00 38.86 2.71
3774 3836 4.074259 TGGTCATGAACTTGTCAATGGAG 58.926 43.478 12.94 0.00 40.50 3.86
3778 3841 4.157289 GCTCATGGTCATGAACTTGTCAAT 59.843 41.667 22.07 0.20 46.10 2.57
3784 3847 2.089980 GCTGCTCATGGTCATGAACTT 58.910 47.619 12.94 2.22 46.10 2.66
3788 3851 1.279846 TGAAGCTGCTCATGGTCATGA 59.720 47.619 1.00 12.41 44.83 3.07
3801 3864 2.415090 CCGAGAAAAGCCAATGAAGCTG 60.415 50.000 0.00 0.00 40.49 4.24
3820 3883 1.140852 TGATTAGCATCCCACTTCCCG 59.859 52.381 0.00 0.00 0.00 5.14
3826 3889 6.238759 GGAACATTTACTGATTAGCATCCCAC 60.239 42.308 0.00 0.00 0.00 4.61
3830 3893 7.559590 ACTGGAACATTTACTGATTAGCATC 57.440 36.000 0.00 0.00 38.20 3.91
3861 3924 9.066892 ACATTCTAGCTCAAACTTTGACATAAA 57.933 29.630 0.00 0.00 35.46 1.40
3888 3951 4.096984 AGCAGTTACATTGGAGCATTAAGC 59.903 41.667 0.00 0.00 46.19 3.09
3917 3980 7.344093 AGAAAGACACATGATATCTTCTCTCCA 59.656 37.037 0.00 0.00 31.44 3.86
3918 3981 7.725251 AGAAAGACACATGATATCTTCTCTCC 58.275 38.462 0.00 0.00 31.44 3.71
3919 3982 8.632679 AGAGAAAGACACATGATATCTTCTCTC 58.367 37.037 17.43 20.79 34.96 3.20
3920 3983 8.537728 AGAGAAAGACACATGATATCTTCTCT 57.462 34.615 17.43 17.43 35.04 3.10
3921 3984 9.033481 CAAGAGAAAGACACATGATATCTTCTC 57.967 37.037 14.61 14.61 31.44 2.87
3922 3985 7.495279 GCAAGAGAAAGACACATGATATCTTCT 59.505 37.037 0.00 2.04 31.44 2.85
3923 3986 7.279536 TGCAAGAGAAAGACACATGATATCTTC 59.720 37.037 0.00 0.00 31.44 2.87
3924 3987 7.065563 GTGCAAGAGAAAGACACATGATATCTT 59.934 37.037 0.00 2.31 34.11 2.40
3925 3988 6.538021 GTGCAAGAGAAAGACACATGATATCT 59.462 38.462 0.00 0.00 0.00 1.98
3926 3989 6.538021 AGTGCAAGAGAAAGACACATGATATC 59.462 38.462 0.00 0.00 33.69 1.63
3927 3990 6.315642 CAGTGCAAGAGAAAGACACATGATAT 59.684 38.462 0.00 0.00 33.69 1.63
3928 3991 5.640783 CAGTGCAAGAGAAAGACACATGATA 59.359 40.000 0.00 0.00 33.69 2.15
3929 3992 4.454847 CAGTGCAAGAGAAAGACACATGAT 59.545 41.667 0.00 0.00 33.69 2.45
3930 3993 3.811497 CAGTGCAAGAGAAAGACACATGA 59.189 43.478 0.00 0.00 33.69 3.07
3931 3994 3.811497 TCAGTGCAAGAGAAAGACACATG 59.189 43.478 0.00 0.00 33.69 3.21
3932 3995 4.077300 TCAGTGCAAGAGAAAGACACAT 57.923 40.909 0.00 0.00 33.69 3.21
3933 3996 3.541996 TCAGTGCAAGAGAAAGACACA 57.458 42.857 0.00 0.00 33.69 3.72
3934 3997 6.035866 CAGATATCAGTGCAAGAGAAAGACAC 59.964 42.308 5.32 0.00 0.00 3.67
3935 3998 6.071165 TCAGATATCAGTGCAAGAGAAAGACA 60.071 38.462 5.32 0.00 0.00 3.41
3936 3999 6.255453 GTCAGATATCAGTGCAAGAGAAAGAC 59.745 42.308 5.32 0.00 0.00 3.01
3937 4000 6.154192 AGTCAGATATCAGTGCAAGAGAAAGA 59.846 38.462 5.32 0.00 0.00 2.52
3938 4001 6.339730 AGTCAGATATCAGTGCAAGAGAAAG 58.660 40.000 5.32 0.00 0.00 2.62
3939 4002 6.291648 AGTCAGATATCAGTGCAAGAGAAA 57.708 37.500 5.32 0.00 0.00 2.52
3940 4003 5.929058 AGTCAGATATCAGTGCAAGAGAA 57.071 39.130 5.32 0.00 0.00 2.87
3941 4004 6.208402 GGATAGTCAGATATCAGTGCAAGAGA 59.792 42.308 5.32 0.00 34.42 3.10
3942 4005 6.389091 GGATAGTCAGATATCAGTGCAAGAG 58.611 44.000 5.32 0.00 34.42 2.85
3943 4006 5.048434 CGGATAGTCAGATATCAGTGCAAGA 60.048 44.000 5.32 0.00 34.42 3.02
3944 4007 5.159925 CGGATAGTCAGATATCAGTGCAAG 58.840 45.833 5.32 0.00 34.42 4.01
3945 4008 4.559502 GCGGATAGTCAGATATCAGTGCAA 60.560 45.833 5.32 0.00 34.42 4.08
3946 4009 3.057245 GCGGATAGTCAGATATCAGTGCA 60.057 47.826 5.32 0.00 34.42 4.57
3947 4010 3.192422 AGCGGATAGTCAGATATCAGTGC 59.808 47.826 5.32 0.00 34.42 4.40
3948 4011 5.412904 TGTAGCGGATAGTCAGATATCAGTG 59.587 44.000 5.32 0.00 34.42 3.66
3949 4012 5.561679 TGTAGCGGATAGTCAGATATCAGT 58.438 41.667 5.32 0.00 34.42 3.41
3950 4013 6.502136 TTGTAGCGGATAGTCAGATATCAG 57.498 41.667 5.32 0.00 34.42 2.90
3951 4014 6.490381 ACTTTGTAGCGGATAGTCAGATATCA 59.510 38.462 5.32 0.00 34.42 2.15
3952 4015 6.915349 ACTTTGTAGCGGATAGTCAGATATC 58.085 40.000 0.00 0.00 0.00 1.63
3953 4016 6.902771 ACTTTGTAGCGGATAGTCAGATAT 57.097 37.500 0.00 0.00 0.00 1.63
3954 4017 7.812690 TTACTTTGTAGCGGATAGTCAGATA 57.187 36.000 0.00 0.00 0.00 1.98
3955 4018 6.710597 TTACTTTGTAGCGGATAGTCAGAT 57.289 37.500 0.00 0.00 0.00 2.90
3956 4019 6.519679 TTTACTTTGTAGCGGATAGTCAGA 57.480 37.500 0.00 0.00 0.00 3.27
3957 4020 7.595502 CCTATTTACTTTGTAGCGGATAGTCAG 59.404 40.741 0.00 0.00 0.00 3.51
3958 4021 7.286087 TCCTATTTACTTTGTAGCGGATAGTCA 59.714 37.037 0.00 0.00 0.00 3.41
3959 4022 7.655490 TCCTATTTACTTTGTAGCGGATAGTC 58.345 38.462 0.00 0.00 0.00 2.59
3960 4023 7.592885 TCCTATTTACTTTGTAGCGGATAGT 57.407 36.000 0.00 0.00 0.00 2.12
3961 4024 7.063544 GCATCCTATTTACTTTGTAGCGGATAG 59.936 40.741 0.00 0.00 0.00 2.08
3962 4025 6.872020 GCATCCTATTTACTTTGTAGCGGATA 59.128 38.462 0.00 0.00 0.00 2.59
3963 4026 5.701290 GCATCCTATTTACTTTGTAGCGGAT 59.299 40.000 0.00 0.00 0.00 4.18
3964 4027 5.054477 GCATCCTATTTACTTTGTAGCGGA 58.946 41.667 0.00 0.00 0.00 5.54
3965 4028 4.814234 TGCATCCTATTTACTTTGTAGCGG 59.186 41.667 0.00 0.00 0.00 5.52
3966 4029 5.523916 ACTGCATCCTATTTACTTTGTAGCG 59.476 40.000 0.00 0.00 0.00 4.26
3967 4030 6.927294 ACTGCATCCTATTTACTTTGTAGC 57.073 37.500 0.00 0.00 0.00 3.58
3968 4031 8.492673 TCAACTGCATCCTATTTACTTTGTAG 57.507 34.615 0.00 0.00 0.00 2.74
3969 4032 8.892723 CATCAACTGCATCCTATTTACTTTGTA 58.107 33.333 0.00 0.00 0.00 2.41
3970 4033 7.765307 CATCAACTGCATCCTATTTACTTTGT 58.235 34.615 0.00 0.00 0.00 2.83
3987 4050 3.374220 TTTGCAGGAAAGCATCAACTG 57.626 42.857 0.00 0.00 45.19 3.16
3988 4051 3.986277 CTTTTGCAGGAAAGCATCAACT 58.014 40.909 0.00 0.00 45.19 3.16
4010 4073 3.578688 GCTTCTATGTTGGCAGGTTTTG 58.421 45.455 0.00 0.00 0.00 2.44
4011 4074 2.562738 GGCTTCTATGTTGGCAGGTTTT 59.437 45.455 0.00 0.00 0.00 2.43
4012 4075 2.171003 GGCTTCTATGTTGGCAGGTTT 58.829 47.619 0.00 0.00 0.00 3.27
4013 4076 1.075374 TGGCTTCTATGTTGGCAGGTT 59.925 47.619 0.00 0.00 0.00 3.50
4014 4077 0.698238 TGGCTTCTATGTTGGCAGGT 59.302 50.000 0.00 0.00 0.00 4.00
4015 4078 1.386533 CTGGCTTCTATGTTGGCAGG 58.613 55.000 7.71 0.00 46.29 4.85
4017 4080 1.825090 CACTGGCTTCTATGTTGGCA 58.175 50.000 0.00 0.00 35.07 4.92
4018 4081 0.453390 GCACTGGCTTCTATGTTGGC 59.547 55.000 0.00 0.00 36.96 4.52
4019 4082 1.825090 TGCACTGGCTTCTATGTTGG 58.175 50.000 0.00 0.00 41.91 3.77
4020 4083 3.687572 GATGCACTGGCTTCTATGTTG 57.312 47.619 0.00 0.00 40.15 3.33
4027 4090 2.105006 TCAGAAGATGCACTGGCTTC 57.895 50.000 10.69 10.69 42.76 3.86
4028 4091 2.803030 ATCAGAAGATGCACTGGCTT 57.197 45.000 0.00 0.00 41.91 4.35
4029 4092 3.920231 TTATCAGAAGATGCACTGGCT 57.080 42.857 0.00 0.00 41.91 4.75
4030 4093 4.213694 CAGATTATCAGAAGATGCACTGGC 59.786 45.833 0.00 0.00 41.68 4.85
4031 4094 5.608449 TCAGATTATCAGAAGATGCACTGG 58.392 41.667 0.00 0.00 35.67 4.00
4032 4095 6.147985 CCATCAGATTATCAGAAGATGCACTG 59.852 42.308 0.00 0.00 35.67 3.66
4033 4096 6.042897 TCCATCAGATTATCAGAAGATGCACT 59.957 38.462 0.00 0.00 35.67 4.40
4034 4097 6.228995 TCCATCAGATTATCAGAAGATGCAC 58.771 40.000 0.00 0.00 35.67 4.57
4035 4098 6.429521 TCCATCAGATTATCAGAAGATGCA 57.570 37.500 0.00 0.00 35.67 3.96
4036 4099 7.201539 CGATTCCATCAGATTATCAGAAGATGC 60.202 40.741 0.00 0.00 35.67 3.91
4037 4100 7.818446 ACGATTCCATCAGATTATCAGAAGATG 59.182 37.037 0.00 3.10 35.67 2.90
4038 4101 7.818446 CACGATTCCATCAGATTATCAGAAGAT 59.182 37.037 0.00 0.00 38.29 2.40
4039 4102 7.014615 TCACGATTCCATCAGATTATCAGAAGA 59.985 37.037 0.00 0.00 0.00 2.87
4040 4103 7.150640 TCACGATTCCATCAGATTATCAGAAG 58.849 38.462 0.00 0.00 0.00 2.85
4041 4104 7.054491 TCACGATTCCATCAGATTATCAGAA 57.946 36.000 0.00 0.00 0.00 3.02
4042 4105 6.294955 CCTCACGATTCCATCAGATTATCAGA 60.295 42.308 0.00 0.00 0.00 3.27
4043 4106 5.868258 CCTCACGATTCCATCAGATTATCAG 59.132 44.000 0.00 0.00 0.00 2.90
4044 4107 5.539955 TCCTCACGATTCCATCAGATTATCA 59.460 40.000 0.00 0.00 0.00 2.15
4045 4108 6.030548 TCCTCACGATTCCATCAGATTATC 57.969 41.667 0.00 0.00 0.00 1.75
4046 4109 6.617782 ATCCTCACGATTCCATCAGATTAT 57.382 37.500 0.00 0.00 0.00 1.28
4047 4110 6.349363 CGTATCCTCACGATTCCATCAGATTA 60.349 42.308 0.00 0.00 44.69 1.75
4048 4111 4.970860 ATCCTCACGATTCCATCAGATT 57.029 40.909 0.00 0.00 0.00 2.40
4049 4112 4.082517 CGTATCCTCACGATTCCATCAGAT 60.083 45.833 0.00 0.00 44.69 2.90
4050 4113 3.253432 CGTATCCTCACGATTCCATCAGA 59.747 47.826 0.00 0.00 44.69 3.27
4051 4114 3.569548 CGTATCCTCACGATTCCATCAG 58.430 50.000 0.00 0.00 44.69 2.90
4052 4115 2.296190 CCGTATCCTCACGATTCCATCA 59.704 50.000 0.00 0.00 44.69 3.07
4053 4116 2.557056 TCCGTATCCTCACGATTCCATC 59.443 50.000 0.00 0.00 44.69 3.51
4054 4117 2.296471 GTCCGTATCCTCACGATTCCAT 59.704 50.000 0.00 0.00 44.69 3.41
4055 4118 1.679680 GTCCGTATCCTCACGATTCCA 59.320 52.381 0.00 0.00 44.69 3.53
4056 4119 1.679680 TGTCCGTATCCTCACGATTCC 59.320 52.381 0.00 0.00 44.69 3.01
4057 4120 3.114065 GTTGTCCGTATCCTCACGATTC 58.886 50.000 0.00 0.00 44.69 2.52
4058 4121 2.159142 GGTTGTCCGTATCCTCACGATT 60.159 50.000 0.00 0.00 44.69 3.34
4059 4122 1.407979 GGTTGTCCGTATCCTCACGAT 59.592 52.381 0.00 0.00 44.69 3.73
4060 4123 0.813184 GGTTGTCCGTATCCTCACGA 59.187 55.000 0.00 0.00 44.69 4.35
4061 4124 0.528924 TGGTTGTCCGTATCCTCACG 59.471 55.000 0.00 0.00 41.59 4.35
4062 4125 1.739371 GCTGGTTGTCCGTATCCTCAC 60.739 57.143 0.00 0.00 36.30 3.51
4063 4126 0.535335 GCTGGTTGTCCGTATCCTCA 59.465 55.000 0.00 0.00 36.30 3.86
4064 4127 0.179081 GGCTGGTTGTCCGTATCCTC 60.179 60.000 0.00 0.00 36.30 3.71
4065 4128 0.907704 TGGCTGGTTGTCCGTATCCT 60.908 55.000 0.00 0.00 36.30 3.24
4066 4129 0.180406 ATGGCTGGTTGTCCGTATCC 59.820 55.000 0.00 0.00 36.30 2.59
4067 4130 2.902705 TATGGCTGGTTGTCCGTATC 57.097 50.000 0.00 0.00 36.30 2.24
4068 4131 3.857157 ATTATGGCTGGTTGTCCGTAT 57.143 42.857 0.00 0.00 36.30 3.06
4069 4132 3.070446 CCTATTATGGCTGGTTGTCCGTA 59.930 47.826 0.00 0.00 36.30 4.02
4070 4133 2.158813 CCTATTATGGCTGGTTGTCCGT 60.159 50.000 0.00 0.00 36.30 4.69
4071 4134 2.494059 CCTATTATGGCTGGTTGTCCG 58.506 52.381 0.00 0.00 36.30 4.79
4072 4135 2.441750 TCCCTATTATGGCTGGTTGTCC 59.558 50.000 0.00 0.00 0.00 4.02
4073 4136 3.857157 TCCCTATTATGGCTGGTTGTC 57.143 47.619 0.00 0.00 0.00 3.18
4074 4137 4.814224 AATCCCTATTATGGCTGGTTGT 57.186 40.909 0.00 0.00 0.00 3.32
4075 4138 4.702131 GCTAATCCCTATTATGGCTGGTTG 59.298 45.833 0.00 0.00 0.00 3.77
4076 4139 4.353788 TGCTAATCCCTATTATGGCTGGTT 59.646 41.667 0.00 0.00 0.00 3.67
4077 4140 3.916349 TGCTAATCCCTATTATGGCTGGT 59.084 43.478 0.00 0.00 0.00 4.00
4078 4141 4.018960 ACTGCTAATCCCTATTATGGCTGG 60.019 45.833 0.00 0.00 29.44 4.85
4079 4142 4.940046 CACTGCTAATCCCTATTATGGCTG 59.060 45.833 0.00 0.00 0.00 4.85
4080 4143 4.846367 TCACTGCTAATCCCTATTATGGCT 59.154 41.667 0.00 0.00 0.00 4.75
4081 4144 5.165961 TCACTGCTAATCCCTATTATGGC 57.834 43.478 0.00 0.00 0.00 4.40
4082 4145 6.950842 TCATCACTGCTAATCCCTATTATGG 58.049 40.000 0.00 0.00 0.00 2.74
4083 4146 7.046652 CCTCATCACTGCTAATCCCTATTATG 58.953 42.308 0.00 0.00 0.00 1.90
4084 4147 6.962311 TCCTCATCACTGCTAATCCCTATTAT 59.038 38.462 0.00 0.00 0.00 1.28
4085 4148 6.322931 TCCTCATCACTGCTAATCCCTATTA 58.677 40.000 0.00 0.00 0.00 0.98
4086 4149 5.158141 TCCTCATCACTGCTAATCCCTATT 58.842 41.667 0.00 0.00 0.00 1.73
4087 4150 4.756564 TCCTCATCACTGCTAATCCCTAT 58.243 43.478 0.00 0.00 0.00 2.57
4088 4151 4.199002 TCCTCATCACTGCTAATCCCTA 57.801 45.455 0.00 0.00 0.00 3.53
4089 4152 3.051940 TCCTCATCACTGCTAATCCCT 57.948 47.619 0.00 0.00 0.00 4.20
4090 4153 3.135530 AGTTCCTCATCACTGCTAATCCC 59.864 47.826 0.00 0.00 0.00 3.85
4091 4154 4.414337 AGTTCCTCATCACTGCTAATCC 57.586 45.455 0.00 0.00 0.00 3.01
4092 4155 5.731599 CAAGTTCCTCATCACTGCTAATC 57.268 43.478 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.