Multiple sequence alignment - TraesCS6A01G050100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G050100 chr6A 100.000 5743 0 0 1 5743 25642677 25636935 0.000000e+00 10606.0
1 TraesCS6A01G050100 chrUn 94.105 2782 124 25 2985 5743 94826172 94823408 0.000000e+00 4193.0
2 TraesCS6A01G050100 chrUn 88.465 1283 70 27 601 1844 94828649 94827406 0.000000e+00 1478.0
3 TraesCS6A01G050100 chrUn 91.180 873 55 13 1872 2725 94827411 94826542 0.000000e+00 1166.0
4 TraesCS6A01G050100 chrUn 86.420 324 38 6 1 320 94828974 94828653 3.290000e-92 350.0
5 TraesCS6A01G050100 chrUn 90.141 213 20 1 2728 2940 94826378 94826167 5.670000e-70 276.0
6 TraesCS6A01G050100 chr6B 86.758 3051 263 81 1 2940 44111502 44108482 0.000000e+00 3265.0
7 TraesCS6A01G050100 chr6B 93.293 1968 104 16 2989 4931 44108483 44106519 0.000000e+00 2878.0
8 TraesCS6A01G050100 chr6B 93.333 765 27 12 4996 5743 44106422 44105665 0.000000e+00 1109.0
9 TraesCS6A01G050100 chr6B 86.598 97 13 0 515 611 350016633 350016729 2.190000e-19 108.0
10 TraesCS6A01G050100 chr4D 81.796 824 100 25 1777 2587 505001886 505001100 0.000000e+00 645.0
11 TraesCS6A01G050100 chr4D 81.794 379 44 17 2351 2708 216314477 216314103 1.560000e-75 294.0
12 TraesCS6A01G050100 chr4D 74.299 214 44 7 500 706 502053900 502054109 4.770000e-11 80.5
13 TraesCS6A01G050100 chr4D 78.125 128 24 4 496 620 455334530 455334404 1.720000e-10 78.7
14 TraesCS6A01G050100 chr7A 83.333 522 75 5 1927 2441 149284923 149284407 6.740000e-129 472.0
15 TraesCS6A01G050100 chr1A 85.906 447 45 14 1786 2220 405516126 405515686 1.460000e-125 460.0
16 TraesCS6A01G050100 chr1A 80.205 293 25 17 950 1238 276325661 276325924 7.600000e-44 189.0
17 TraesCS6A01G050100 chr1A 77.889 199 29 15 515 705 519261856 519261665 6.080000e-20 110.0
18 TraesCS6A01G050100 chr2B 81.884 414 49 17 2314 2708 48335153 48335559 5.550000e-85 326.0
19 TraesCS6A01G050100 chr2B 84.821 112 7 5 1174 1285 402156032 402155931 2.830000e-18 104.0
20 TraesCS6A01G050100 chr4B 82.759 377 42 16 2351 2708 340830021 340829649 1.200000e-81 315.0
21 TraesCS6A01G050100 chr4A 79.530 298 26 19 953 1246 203315801 203315535 4.570000e-41 180.0
22 TraesCS6A01G050100 chr4A 95.745 94 3 1 4922 5014 646776652 646776745 3.580000e-32 150.0
23 TraesCS6A01G050100 chr4A 97.701 87 2 0 4922 5008 743141209 743141123 3.580000e-32 150.0
24 TraesCS6A01G050100 chr5B 95.050 101 3 2 4908 5007 665559923 665560022 2.140000e-34 158.0
25 TraesCS6A01G050100 chr5B 94.565 92 5 0 4922 5013 317294325 317294234 6.000000e-30 143.0
26 TraesCS6A01G050100 chr5B 92.000 100 8 0 4922 5021 677875978 677876077 2.160000e-29 141.0
27 TraesCS6A01G050100 chr5B 86.869 99 13 0 4006 4104 536051364 536051462 1.690000e-20 111.0
28 TraesCS6A01G050100 chr5B 85.227 88 12 1 531 618 113504391 113504305 7.930000e-14 89.8
29 TraesCS6A01G050100 chr5B 94.737 57 3 0 1182 1238 536046203 536046259 7.930000e-14 89.8
30 TraesCS6A01G050100 chr1D 94.898 98 5 0 4913 5010 80020043 80020140 2.770000e-33 154.0
31 TraesCS6A01G050100 chr5A 93.069 101 5 2 4913 5012 362781698 362781599 4.640000e-31 147.0
32 TraesCS6A01G050100 chr2D 85.612 139 16 2 1100 1238 172546050 172546184 6.000000e-30 143.0
33 TraesCS6A01G050100 chr2D 78.341 217 39 8 490 701 38768417 38768630 3.610000e-27 134.0
34 TraesCS6A01G050100 chr2D 78.302 106 18 4 33 135 558470413 558470310 4.800000e-06 63.9
35 TraesCS6A01G050100 chr3D 93.684 95 3 3 4923 5016 82247048 82246956 7.760000e-29 139.0
36 TraesCS6A01G050100 chr6D 81.818 154 16 11 558 705 112916132 112915985 1.010000e-22 119.0
37 TraesCS6A01G050100 chr3B 84.821 112 7 5 1174 1285 679524394 679524293 2.830000e-18 104.0
38 TraesCS6A01G050100 chr5D 75.510 196 39 7 515 706 477036560 477036750 2.850000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G050100 chr6A 25636935 25642677 5742 True 10606.000000 10606 100.0000 1 5743 1 chr6A.!!$R1 5742
1 TraesCS6A01G050100 chrUn 94823408 94828974 5566 True 1492.600000 4193 90.0622 1 5743 5 chrUn.!!$R1 5742
2 TraesCS6A01G050100 chr6B 44105665 44111502 5837 True 2417.333333 3265 91.1280 1 5743 3 chr6B.!!$R1 5742
3 TraesCS6A01G050100 chr4D 505001100 505001886 786 True 645.000000 645 81.7960 1777 2587 1 chr4D.!!$R3 810
4 TraesCS6A01G050100 chr7A 149284407 149284923 516 True 472.000000 472 83.3330 1927 2441 1 chr7A.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 514 0.097325 TTGTTGTTGTTGGCGTCGAC 59.903 50.0 5.18 5.18 0.00 4.20 F
832 863 0.589708 AAAGCTTGTTAACGGTCCGC 59.410 50.0 12.28 0.00 0.00 5.54 F
1507 1585 0.394192 TTGTGCTGACCTGTCTCCTG 59.606 55.0 0.00 0.00 0.00 3.86 F
1865 1997 0.399454 AGGCTGCATTCACTGACACT 59.601 50.0 0.50 0.00 0.00 3.55 F
1866 1998 0.520404 GGCTGCATTCACTGACACTG 59.480 55.0 0.50 0.00 0.00 3.66 F
2935 3272 0.108804 GTGGAGAATCGCGTCTGGAA 60.109 55.0 5.77 0.00 34.37 3.53 F
2942 3279 0.391661 ATCGCGTCTGGAAACATGCT 60.392 50.0 5.77 0.00 41.51 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1332 1401 0.250234 CCCACTCGATTTGCTCCTCA 59.750 55.000 0.00 0.00 0.00 3.86 R
1846 1978 0.399454 AGTGTCAGTGAATGCAGCCT 59.601 50.000 0.00 0.00 0.00 4.58 R
2865 3202 0.517316 GCTGCGACAAGGAACGAAAT 59.483 50.000 0.00 0.00 0.00 2.17 R
2870 3207 1.202076 GCTTATGCTGCGACAAGGAAC 60.202 52.381 8.96 0.00 36.03 3.62 R
3785 4134 2.238084 TACAGATCAGACTGCAGGGT 57.762 50.000 19.93 0.66 41.06 4.34 R
4653 5016 1.559219 TGGATGGTGCTAGCAGCTTAA 59.441 47.619 38.12 24.21 42.97 1.85 R
4765 5128 7.624360 AGTAAAATCGATCTGCCATTGTAAA 57.376 32.000 0.00 0.00 0.00 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.357034 GCGGTCTTCGTCAGGCAA 60.357 61.111 0.00 0.00 41.72 4.52
61 62 2.975799 GCGTTGGTGAAGCCGGAA 60.976 61.111 5.05 0.00 41.21 4.30
108 109 4.227134 CCCGGTCTGGCTGGATCG 62.227 72.222 9.15 6.71 46.81 3.69
139 140 4.033776 CATCGGTGCTGGTGGGGT 62.034 66.667 0.00 0.00 0.00 4.95
142 143 4.033776 CGGTGCTGGTGGGGTGAT 62.034 66.667 0.00 0.00 0.00 3.06
145 146 1.074775 GTGCTGGTGGGGTGATGAA 59.925 57.895 0.00 0.00 0.00 2.57
150 151 0.251916 TGGTGGGGTGATGAATCGAC 59.748 55.000 0.00 0.00 0.00 4.20
152 153 0.174845 GTGGGGTGATGAATCGACGA 59.825 55.000 0.00 0.00 0.00 4.20
196 198 1.365699 GTCGTAAACGGCATGGTGAT 58.634 50.000 1.62 0.00 44.43 3.06
197 199 1.326548 GTCGTAAACGGCATGGTGATC 59.673 52.381 1.62 0.00 44.43 2.92
202 204 4.614993 CGTAAACGGCATGGTGATCTTTTT 60.615 41.667 0.00 0.00 35.37 1.94
203 205 3.302365 AACGGCATGGTGATCTTTTTG 57.698 42.857 0.00 0.00 0.00 2.44
207 212 3.305267 CGGCATGGTGATCTTTTTGTCAA 60.305 43.478 0.00 0.00 0.00 3.18
227 232 8.477419 TGTCAAATTTTCTTTAGGGAGTCATT 57.523 30.769 0.00 0.00 0.00 2.57
230 235 9.581289 TCAAATTTTCTTTAGGGAGTCATTGTA 57.419 29.630 0.00 0.00 0.00 2.41
239 244 9.226606 CTTTAGGGAGTCATTGTATTTGTTGTA 57.773 33.333 0.00 0.00 0.00 2.41
243 248 5.163652 GGAGTCATTGTATTTGTTGTAGGGC 60.164 44.000 0.00 0.00 0.00 5.19
251 258 3.316071 TTTGTTGTAGGGCGACGAATA 57.684 42.857 0.00 0.00 31.49 1.75
268 275 0.188342 ATAGGCGGCATTTCCCCAAT 59.812 50.000 13.08 0.00 0.00 3.16
285 292 8.533569 TTCCCCAATTTAGGAATAATGTTCTC 57.466 34.615 2.39 0.00 37.23 2.87
315 323 6.740905 CGCTATTTACTTTATGTTGGTGTGTG 59.259 38.462 0.00 0.00 0.00 3.82
322 330 0.383949 ATGTTGGTGTGTGTTTCGCC 59.616 50.000 0.00 0.00 36.18 5.54
323 331 0.960861 TGTTGGTGTGTGTTTCGCCA 60.961 50.000 0.00 0.00 42.62 5.69
327 335 3.276091 TGTGTGTTTCGCCAGCGG 61.276 61.111 12.71 0.00 40.25 5.52
339 347 3.716195 CAGCGGATGGTGGGTGGA 61.716 66.667 0.00 0.00 39.92 4.02
342 350 3.402681 CGGATGGTGGGTGGAGCT 61.403 66.667 0.00 0.00 0.00 4.09
349 357 1.004440 GTGGGTGGAGCTGTGTCTC 60.004 63.158 0.00 0.00 0.00 3.36
369 377 1.726533 CGGCGAGACTTCTAGGACCC 61.727 65.000 0.00 0.00 0.00 4.46
388 396 2.220313 CCGGTCCGTTTAGGTTTTCAA 58.780 47.619 11.06 0.00 41.99 2.69
397 405 5.092781 CGTTTAGGTTTTCAATGGATTCGG 58.907 41.667 0.00 0.00 0.00 4.30
399 407 1.824852 AGGTTTTCAATGGATTCGGCC 59.175 47.619 0.00 0.00 0.00 6.13
400 408 1.134818 GGTTTTCAATGGATTCGGCCC 60.135 52.381 0.00 0.00 0.00 5.80
407 425 3.573491 GGATTCGGCCCGCTTTCG 61.573 66.667 0.00 0.00 0.00 3.46
412 430 4.745751 CGGCCCGCTTTCGTGGTA 62.746 66.667 0.00 0.00 39.22 3.25
428 446 4.283978 TCGTGGTATTTGGAGTTCCTACAA 59.716 41.667 0.00 0.00 31.74 2.41
431 449 4.288626 TGGTATTTGGAGTTCCTACAAGCT 59.711 41.667 0.00 0.00 35.56 3.74
437 455 5.599999 TGGAGTTCCTACAAGCTCTTATC 57.400 43.478 0.00 0.00 36.82 1.75
440 458 5.010213 GGAGTTCCTACAAGCTCTTATCGAT 59.990 44.000 2.16 2.16 0.00 3.59
441 459 6.461788 GGAGTTCCTACAAGCTCTTATCGATT 60.462 42.308 1.71 0.00 0.00 3.34
467 485 2.125269 CTCCGGGGCGACGATTTT 60.125 61.111 0.00 0.00 35.47 1.82
471 489 1.423845 CGGGGCGACGATTTTCTTG 59.576 57.895 0.00 0.00 35.47 3.02
472 490 1.800681 GGGGCGACGATTTTCTTGG 59.199 57.895 0.00 0.00 0.00 3.61
473 491 0.958876 GGGGCGACGATTTTCTTGGT 60.959 55.000 0.00 0.00 0.00 3.67
481 499 5.390567 GCGACGATTTTCTTGGTAGATTGTT 60.391 40.000 0.00 0.00 0.00 2.83
483 501 6.347402 CGACGATTTTCTTGGTAGATTGTTGT 60.347 38.462 0.00 0.00 0.00 3.32
486 504 7.138736 CGATTTTCTTGGTAGATTGTTGTTGT 58.861 34.615 0.00 0.00 0.00 3.32
494 512 1.002900 AGATTGTTGTTGTTGGCGTCG 60.003 47.619 0.00 0.00 0.00 5.12
495 513 1.003331 GATTGTTGTTGTTGGCGTCGA 60.003 47.619 0.00 0.00 0.00 4.20
496 514 0.097325 TTGTTGTTGTTGGCGTCGAC 59.903 50.000 5.18 5.18 0.00 4.20
497 515 1.367195 GTTGTTGTTGGCGTCGACG 60.367 57.895 32.57 32.57 43.27 5.12
522 543 2.166870 TCTCGGCCGCTAATTCTACAAA 59.833 45.455 23.51 0.00 0.00 2.83
527 548 2.612672 GCCGCTAATTCTACAAACTCCC 59.387 50.000 0.00 0.00 0.00 4.30
529 550 3.518590 CGCTAATTCTACAAACTCCCGT 58.481 45.455 0.00 0.00 0.00 5.28
541 562 4.021807 ACAAACTCCCGTGTTTCAAAAAGT 60.022 37.500 0.00 0.00 37.98 2.66
556 577 3.364889 AAAAGTTTGCTCCGTTAAGGC 57.635 42.857 0.00 0.00 40.77 4.35
583 604 1.905843 AGAGGCGGCATCGAGCTAT 60.906 57.895 13.08 0.00 44.79 2.97
682 704 3.970842 TGTAAGGGTGTTTTTGTGAGGT 58.029 40.909 0.00 0.00 0.00 3.85
706 728 7.709613 GGTATTGTGATACTTAATATAGGGCCG 59.290 40.741 0.00 0.00 38.53 6.13
707 729 5.670792 TGTGATACTTAATATAGGGCCGG 57.329 43.478 0.00 0.00 0.00 6.13
708 730 4.081309 TGTGATACTTAATATAGGGCCGGC 60.081 45.833 21.18 21.18 0.00 6.13
710 732 2.040342 ACTTAATATAGGGCCGGCCT 57.960 50.000 42.70 30.10 36.10 5.19
715 740 3.646736 AATATAGGGCCGGCCTATTTC 57.353 47.619 42.70 26.86 36.10 2.17
722 747 2.696187 GGGCCGGCCTATTTCAAATAAA 59.304 45.455 42.70 0.00 36.10 1.40
723 748 3.243737 GGGCCGGCCTATTTCAAATAAAG 60.244 47.826 42.70 0.00 36.10 1.85
725 750 4.261614 GGCCGGCCTATTTCAAATAAAGAG 60.262 45.833 38.76 0.00 0.00 2.85
745 775 5.566469 AGAGTAGATGATAGCTAGTGGGAC 58.434 45.833 0.00 0.00 0.00 4.46
747 777 3.913370 AGATGATAGCTAGTGGGACCT 57.087 47.619 0.00 0.00 0.00 3.85
749 779 4.668636 AGATGATAGCTAGTGGGACCTAC 58.331 47.826 0.00 0.00 0.00 3.18
790 820 9.996554 AGTTTTTGGCACTATTAATTTTTAGCT 57.003 25.926 0.00 0.00 0.00 3.32
808 839 8.994429 TTTTAGCTGTCAAGATTTTTGTTGAA 57.006 26.923 0.00 0.00 34.52 2.69
809 840 9.598517 TTTTAGCTGTCAAGATTTTTGTTGAAT 57.401 25.926 0.00 0.00 34.52 2.57
818 849 5.370679 AGATTTTTGTTGAATGGCAAAGCT 58.629 33.333 0.00 0.00 38.44 3.74
832 863 0.589708 AAAGCTTGTTAACGGTCCGC 59.410 50.000 12.28 0.00 0.00 5.54
870 902 4.426313 CCCTCCTTTGGCGTCCCC 62.426 72.222 0.00 0.00 0.00 4.81
914 946 1.052617 GCCATCTCCTTCTCCTACCC 58.947 60.000 0.00 0.00 0.00 3.69
921 953 2.043652 TTCTCCTACCCCCGACCG 60.044 66.667 0.00 0.00 0.00 4.79
922 954 2.850828 CTTCTCCTACCCCCGACCGT 62.851 65.000 0.00 0.00 0.00 4.83
976 1018 3.782244 CACACGCGCCAAGCTCTC 61.782 66.667 5.73 0.00 45.59 3.20
977 1019 3.996124 ACACGCGCCAAGCTCTCT 61.996 61.111 5.73 0.00 45.59 3.10
1070 1113 2.024871 GATCAGGTCGGTCGCTCG 59.975 66.667 0.00 0.00 0.00 5.03
1126 1169 2.287915 CCGCATGTCTTTACCTGTATGC 59.712 50.000 0.00 0.00 37.98 3.14
1162 1205 3.572255 TGGACCGCTTGCTTAATTTCTTT 59.428 39.130 0.00 0.00 0.00 2.52
1163 1206 4.166523 GGACCGCTTGCTTAATTTCTTTC 58.833 43.478 0.00 0.00 0.00 2.62
1164 1207 4.082733 GGACCGCTTGCTTAATTTCTTTCT 60.083 41.667 0.00 0.00 0.00 2.52
1171 1214 5.376854 TGCTTAATTTCTTTCTCTGTGCC 57.623 39.130 0.00 0.00 0.00 5.01
1172 1215 5.072741 TGCTTAATTTCTTTCTCTGTGCCT 58.927 37.500 0.00 0.00 0.00 4.75
1238 1281 1.614413 CTCCCGCTACCTCAGGTAATC 59.386 57.143 4.72 0.00 37.76 1.75
1239 1282 1.217183 TCCCGCTACCTCAGGTAATCT 59.783 52.381 4.72 0.00 37.76 2.40
1240 1283 2.444388 TCCCGCTACCTCAGGTAATCTA 59.556 50.000 4.72 0.00 37.76 1.98
1241 1284 3.075582 TCCCGCTACCTCAGGTAATCTAT 59.924 47.826 4.72 0.00 37.76 1.98
1242 1285 3.444388 CCCGCTACCTCAGGTAATCTATC 59.556 52.174 4.72 0.00 37.76 2.08
1253 1296 8.576442 CCTCAGGTAATCTATCTCTCTTTCTTC 58.424 40.741 0.00 0.00 0.00 2.87
1285 1328 0.673644 CGATGGTTCTGCTCCCGTTT 60.674 55.000 0.00 0.00 0.00 3.60
1463 1535 2.729194 TCTCCTTCTCCTTCTCCTTCG 58.271 52.381 0.00 0.00 0.00 3.79
1477 1555 2.049802 TTCGTCGTCTTCGGCACC 60.050 61.111 0.00 0.00 42.21 5.01
1491 1569 2.428890 TCGGCACCAAACTGAATTTTGT 59.571 40.909 0.00 0.00 35.09 2.83
1492 1570 2.539274 CGGCACCAAACTGAATTTTGTG 59.461 45.455 0.55 0.55 43.56 3.33
1495 1573 4.782252 CACCAAACTGAATTTTGTGCTG 57.218 40.909 0.00 0.00 37.19 4.41
1496 1574 4.431809 CACCAAACTGAATTTTGTGCTGA 58.568 39.130 0.00 0.00 37.19 4.26
1497 1575 4.268405 CACCAAACTGAATTTTGTGCTGAC 59.732 41.667 0.00 0.00 37.19 3.51
1499 1577 4.441913 CCAAACTGAATTTTGTGCTGACCT 60.442 41.667 0.00 0.00 35.09 3.85
1500 1578 3.996150 ACTGAATTTTGTGCTGACCTG 57.004 42.857 0.00 0.00 0.00 4.00
1502 1580 3.316308 ACTGAATTTTGTGCTGACCTGTC 59.684 43.478 0.00 0.00 0.00 3.51
1505 1583 1.967319 TTTTGTGCTGACCTGTCTCC 58.033 50.000 0.00 0.00 0.00 3.71
1506 1584 1.131638 TTTGTGCTGACCTGTCTCCT 58.868 50.000 0.00 0.00 0.00 3.69
1507 1585 0.394192 TTGTGCTGACCTGTCTCCTG 59.606 55.000 0.00 0.00 0.00 3.86
1623 1705 0.610232 CAGGCCCAAAGTAAGCTGCT 60.610 55.000 0.00 0.00 0.00 4.24
1642 1724 5.049818 GCTGCTACATTCATCTTATCCACAC 60.050 44.000 0.00 0.00 0.00 3.82
1644 1726 6.594744 TGCTACATTCATCTTATCCACACAT 58.405 36.000 0.00 0.00 0.00 3.21
1686 1771 6.201615 GCACATTGATCTCTCGATGAACATTA 59.798 38.462 9.30 0.00 43.45 1.90
1844 1976 3.066760 GCTGTTGCTCTACCTGTTTTTGT 59.933 43.478 0.00 0.00 36.03 2.83
1845 1977 4.274950 GCTGTTGCTCTACCTGTTTTTGTA 59.725 41.667 0.00 0.00 36.03 2.41
1846 1978 5.220970 GCTGTTGCTCTACCTGTTTTTGTAA 60.221 40.000 0.00 0.00 36.03 2.41
1847 1979 6.371809 TGTTGCTCTACCTGTTTTTGTAAG 57.628 37.500 0.00 0.00 0.00 2.34
1848 1980 5.298276 TGTTGCTCTACCTGTTTTTGTAAGG 59.702 40.000 0.00 0.00 37.11 2.69
1849 1981 3.818773 TGCTCTACCTGTTTTTGTAAGGC 59.181 43.478 0.00 0.00 34.18 4.35
1850 1982 4.072839 GCTCTACCTGTTTTTGTAAGGCT 58.927 43.478 0.00 0.00 34.18 4.58
1851 1983 4.083271 GCTCTACCTGTTTTTGTAAGGCTG 60.083 45.833 0.00 0.00 34.18 4.85
1852 1984 3.818773 TCTACCTGTTTTTGTAAGGCTGC 59.181 43.478 0.00 0.00 34.18 5.25
1853 1985 2.383855 ACCTGTTTTTGTAAGGCTGCA 58.616 42.857 0.50 0.00 34.18 4.41
1854 1986 2.965147 ACCTGTTTTTGTAAGGCTGCAT 59.035 40.909 0.50 0.00 34.18 3.96
1855 1987 3.387699 ACCTGTTTTTGTAAGGCTGCATT 59.612 39.130 4.52 4.52 34.18 3.56
1856 1988 3.989817 CCTGTTTTTGTAAGGCTGCATTC 59.010 43.478 1.55 0.00 0.00 2.67
1857 1989 4.501229 CCTGTTTTTGTAAGGCTGCATTCA 60.501 41.667 1.55 0.00 0.00 2.57
1858 1990 4.367450 TGTTTTTGTAAGGCTGCATTCAC 58.633 39.130 1.55 1.56 0.00 3.18
1859 1991 4.099266 TGTTTTTGTAAGGCTGCATTCACT 59.901 37.500 1.55 0.00 0.00 3.41
1860 1992 3.921119 TTTGTAAGGCTGCATTCACTG 57.079 42.857 1.55 0.00 0.00 3.66
1861 1993 2.857186 TGTAAGGCTGCATTCACTGA 57.143 45.000 1.55 0.00 0.00 3.41
1862 1994 2.426522 TGTAAGGCTGCATTCACTGAC 58.573 47.619 1.55 0.00 0.00 3.51
1863 1995 2.224499 TGTAAGGCTGCATTCACTGACA 60.224 45.455 1.55 0.00 0.00 3.58
1864 1996 1.242076 AAGGCTGCATTCACTGACAC 58.758 50.000 0.50 0.00 0.00 3.67
1865 1997 0.399454 AGGCTGCATTCACTGACACT 59.601 50.000 0.50 0.00 0.00 3.55
1866 1998 0.520404 GGCTGCATTCACTGACACTG 59.480 55.000 0.50 0.00 0.00 3.66
1867 1999 1.233019 GCTGCATTCACTGACACTGT 58.767 50.000 0.00 0.00 0.00 3.55
1868 2000 1.605710 GCTGCATTCACTGACACTGTT 59.394 47.619 0.00 0.00 0.00 3.16
1869 2001 2.033801 GCTGCATTCACTGACACTGTTT 59.966 45.455 0.00 0.00 0.00 2.83
1870 2002 3.851105 GCTGCATTCACTGACACTGTTTC 60.851 47.826 0.00 0.00 0.00 2.78
1871 2003 3.544684 TGCATTCACTGACACTGTTTCT 58.455 40.909 0.00 0.00 0.00 2.52
1872 2004 3.947196 TGCATTCACTGACACTGTTTCTT 59.053 39.130 0.00 0.00 0.00 2.52
1873 2005 4.398988 TGCATTCACTGACACTGTTTCTTT 59.601 37.500 0.00 0.00 0.00 2.52
1874 2006 5.105797 TGCATTCACTGACACTGTTTCTTTT 60.106 36.000 0.00 0.00 0.00 2.27
1875 2007 5.807011 GCATTCACTGACACTGTTTCTTTTT 59.193 36.000 0.00 0.00 0.00 1.94
1876 2008 6.972328 GCATTCACTGACACTGTTTCTTTTTA 59.028 34.615 0.00 0.00 0.00 1.52
1945 2077 3.074390 TGAACTCCTTCAACACCCATGAT 59.926 43.478 0.00 0.00 33.20 2.45
1953 2085 2.086869 CAACACCCATGATGACACCTC 58.913 52.381 0.00 0.00 30.30 3.85
2003 2135 1.134367 CTCTCCTGACATTCGCGGTTA 59.866 52.381 6.13 0.00 0.00 2.85
2142 2290 4.293415 CAAGACAGATTCTGTTTTGGTGC 58.707 43.478 29.24 13.99 46.15 5.01
2287 2436 6.000246 TGGCTGGTAAGACATTCATTCATA 58.000 37.500 0.00 0.00 36.11 2.15
2316 2465 7.362662 TGATCAGCAAATTCTTGTCTAACAAC 58.637 34.615 0.00 0.00 33.96 3.32
2318 2467 6.728200 TCAGCAAATTCTTGTCTAACAACAG 58.272 36.000 0.00 0.00 33.96 3.16
2325 2474 5.592104 TCTTGTCTAACAACAGTCACAGA 57.408 39.130 0.00 0.00 33.96 3.41
2331 2480 8.534333 TGTCTAACAACAGTCACAGATTAATC 57.466 34.615 7.41 7.41 0.00 1.75
2471 2626 7.206981 TCATCTCAGGAAAAGTTTTCATCAC 57.793 36.000 25.59 11.32 0.00 3.06
2482 2637 5.913137 AGTTTTCATCACAAGTTTCCACA 57.087 34.783 0.00 0.00 0.00 4.17
2493 2651 5.914635 CACAAGTTTCCACACATGTAACATC 59.085 40.000 10.28 0.00 0.00 3.06
2502 2660 8.347004 TCCACACATGTAACATCATTGTTATT 57.653 30.769 0.00 0.00 46.91 1.40
2548 2710 4.219033 ACGTTTTCATCGCAAATTCAGAC 58.781 39.130 0.00 0.00 0.00 3.51
2566 2728 2.159085 AGACAACTTGGGCGCTATAGTC 60.159 50.000 7.64 7.02 0.00 2.59
2680 2853 6.878317 TGAATAGAGATACTGAACCACTTGG 58.122 40.000 0.00 0.00 42.17 3.61
2762 3095 9.435688 AAGATCTATTAAATTTGGTTTGTTGGC 57.564 29.630 0.00 0.00 0.00 4.52
2763 3096 7.759433 AGATCTATTAAATTTGGTTTGTTGGCG 59.241 33.333 0.00 0.00 0.00 5.69
2770 3103 1.757682 TGGTTTGTTGGCGAAGAAGT 58.242 45.000 0.00 0.00 0.00 3.01
2803 3136 2.156917 CTTCAGGTTACCCCGAAAACC 58.843 52.381 0.00 0.00 44.59 3.27
2865 3202 5.286221 AGGAAGGGTTCAGGTTAGCTTATA 58.714 41.667 0.00 0.00 0.00 0.98
2870 3207 6.289064 AGGGTTCAGGTTAGCTTATATTTCG 58.711 40.000 0.00 0.00 0.00 3.46
2879 3216 7.494952 AGGTTAGCTTATATTTCGTTCCTTGTC 59.505 37.037 0.00 0.00 0.00 3.18
2934 3271 0.965866 AGTGGAGAATCGCGTCTGGA 60.966 55.000 5.77 0.00 34.37 3.86
2935 3272 0.108804 GTGGAGAATCGCGTCTGGAA 60.109 55.000 5.77 0.00 34.37 3.53
2936 3273 0.606096 TGGAGAATCGCGTCTGGAAA 59.394 50.000 5.77 0.00 34.37 3.13
2937 3274 1.000145 GGAGAATCGCGTCTGGAAAC 59.000 55.000 5.77 0.00 34.37 2.78
2938 3275 1.671850 GGAGAATCGCGTCTGGAAACA 60.672 52.381 5.77 0.00 34.37 2.83
2939 3276 2.271800 GAGAATCGCGTCTGGAAACAT 58.728 47.619 5.77 0.00 41.51 2.71
2940 3277 2.002586 AGAATCGCGTCTGGAAACATG 58.997 47.619 5.77 0.00 41.51 3.21
2941 3278 0.447801 AATCGCGTCTGGAAACATGC 59.552 50.000 5.77 0.00 41.51 4.06
2942 3279 0.391661 ATCGCGTCTGGAAACATGCT 60.392 50.000 5.77 0.00 41.51 3.79
2943 3280 1.014044 TCGCGTCTGGAAACATGCTC 61.014 55.000 5.77 0.00 41.51 4.26
2944 3281 1.016130 CGCGTCTGGAAACATGCTCT 61.016 55.000 0.00 0.00 41.51 4.09
2945 3282 1.160137 GCGTCTGGAAACATGCTCTT 58.840 50.000 0.00 0.00 41.51 2.85
2946 3283 1.537202 GCGTCTGGAAACATGCTCTTT 59.463 47.619 0.00 0.00 41.51 2.52
2947 3284 2.030805 GCGTCTGGAAACATGCTCTTTT 60.031 45.455 0.00 0.00 41.51 2.27
2948 3285 3.188460 GCGTCTGGAAACATGCTCTTTTA 59.812 43.478 0.00 0.00 41.51 1.52
2949 3286 4.670221 GCGTCTGGAAACATGCTCTTTTAG 60.670 45.833 0.00 0.00 41.51 1.85
2950 3287 4.142816 CGTCTGGAAACATGCTCTTTTAGG 60.143 45.833 0.00 0.00 41.51 2.69
2951 3288 5.003804 GTCTGGAAACATGCTCTTTTAGGA 58.996 41.667 0.00 0.00 41.51 2.94
2952 3289 5.123027 GTCTGGAAACATGCTCTTTTAGGAG 59.877 44.000 0.00 0.00 41.51 3.69
2953 3290 4.985538 TGGAAACATGCTCTTTTAGGAGT 58.014 39.130 0.00 0.00 33.59 3.85
2954 3291 6.013725 TCTGGAAACATGCTCTTTTAGGAGTA 60.014 38.462 0.00 0.00 41.51 2.59
2955 3292 6.173339 TGGAAACATGCTCTTTTAGGAGTAG 58.827 40.000 0.00 0.00 33.59 2.57
2956 3293 5.586643 GGAAACATGCTCTTTTAGGAGTAGG 59.413 44.000 0.00 0.00 36.22 3.18
2957 3294 4.143986 ACATGCTCTTTTAGGAGTAGGC 57.856 45.455 0.00 0.00 34.16 3.93
2958 3295 3.519510 ACATGCTCTTTTAGGAGTAGGCA 59.480 43.478 0.00 0.00 34.16 4.75
2959 3296 4.164988 ACATGCTCTTTTAGGAGTAGGCAT 59.835 41.667 0.00 0.00 39.31 4.40
2960 3297 4.844349 TGCTCTTTTAGGAGTAGGCATT 57.156 40.909 0.00 0.00 35.89 3.56
2961 3298 5.179452 TGCTCTTTTAGGAGTAGGCATTT 57.821 39.130 0.00 0.00 35.89 2.32
2962 3299 5.186198 TGCTCTTTTAGGAGTAGGCATTTC 58.814 41.667 0.00 0.00 35.89 2.17
2963 3300 5.045578 TGCTCTTTTAGGAGTAGGCATTTCT 60.046 40.000 0.00 0.00 35.89 2.52
2964 3301 5.525745 GCTCTTTTAGGAGTAGGCATTTCTC 59.474 44.000 0.00 0.00 35.89 2.87
2965 3302 6.620877 TCTTTTAGGAGTAGGCATTTCTCA 57.379 37.500 5.82 0.00 0.00 3.27
2966 3303 7.200434 TCTTTTAGGAGTAGGCATTTCTCAT 57.800 36.000 5.82 1.84 0.00 2.90
2967 3304 7.633789 TCTTTTAGGAGTAGGCATTTCTCATT 58.366 34.615 5.82 0.00 0.00 2.57
2968 3305 8.109634 TCTTTTAGGAGTAGGCATTTCTCATTT 58.890 33.333 5.82 0.00 0.00 2.32
2969 3306 7.865706 TTTAGGAGTAGGCATTTCTCATTTC 57.134 36.000 5.82 0.00 0.00 2.17
2970 3307 5.707066 AGGAGTAGGCATTTCTCATTTCT 57.293 39.130 5.82 0.00 0.00 2.52
2971 3308 5.679601 AGGAGTAGGCATTTCTCATTTCTC 58.320 41.667 5.82 0.00 0.00 2.87
2972 3309 4.819088 GGAGTAGGCATTTCTCATTTCTCC 59.181 45.833 5.82 0.00 0.00 3.71
2973 3310 5.397334 GGAGTAGGCATTTCTCATTTCTCCT 60.397 44.000 0.00 0.00 36.03 3.69
2974 3311 6.183361 GGAGTAGGCATTTCTCATTTCTCCTA 60.183 42.308 0.00 0.00 36.03 2.94
2975 3312 6.825610 AGTAGGCATTTCTCATTTCTCCTAG 58.174 40.000 0.00 0.00 0.00 3.02
2976 3313 4.459330 AGGCATTTCTCATTTCTCCTAGC 58.541 43.478 0.00 0.00 0.00 3.42
2977 3314 4.165758 AGGCATTTCTCATTTCTCCTAGCT 59.834 41.667 0.00 0.00 0.00 3.32
2978 3315 4.886489 GGCATTTCTCATTTCTCCTAGCTT 59.114 41.667 0.00 0.00 0.00 3.74
2979 3316 5.359292 GGCATTTCTCATTTCTCCTAGCTTT 59.641 40.000 0.00 0.00 0.00 3.51
2980 3317 6.459435 GGCATTTCTCATTTCTCCTAGCTTTC 60.459 42.308 0.00 0.00 0.00 2.62
2981 3318 6.459435 GCATTTCTCATTTCTCCTAGCTTTCC 60.459 42.308 0.00 0.00 0.00 3.13
2982 3319 4.762289 TCTCATTTCTCCTAGCTTTCCC 57.238 45.455 0.00 0.00 0.00 3.97
2983 3320 4.366267 TCTCATTTCTCCTAGCTTTCCCT 58.634 43.478 0.00 0.00 0.00 4.20
2987 3324 7.127955 TCTCATTTCTCCTAGCTTTCCCTAAAT 59.872 37.037 0.00 0.00 0.00 1.40
3001 3338 7.908601 GCTTTCCCTAAATATAACGACAACAAG 59.091 37.037 0.00 0.00 0.00 3.16
3007 3344 8.723311 CCTAAATATAACGACAACAAGTTTCCA 58.277 33.333 0.00 0.00 0.00 3.53
3018 3355 9.631639 CGACAACAAGTTTCCATTTTATTTTTC 57.368 29.630 0.00 0.00 0.00 2.29
3039 3376 2.156917 CAGCTTCTGGAGATTGCACAA 58.843 47.619 0.00 0.00 0.00 3.33
3061 3398 5.420725 AGTTCCTGATGCACATGTAAGTA 57.579 39.130 0.00 0.00 0.00 2.24
3066 3403 8.338259 GTTCCTGATGCACATGTAAGTAATAAG 58.662 37.037 0.00 0.00 0.00 1.73
3071 3408 8.204160 TGATGCACATGTAAGTAATAAGCTAGT 58.796 33.333 0.00 0.00 0.00 2.57
3163 3510 7.864108 TCCACATTTATCTGAAATGTAGGTG 57.136 36.000 13.67 4.14 45.87 4.00
3164 3511 6.828273 TCCACATTTATCTGAAATGTAGGTGG 59.172 38.462 13.67 11.33 45.87 4.61
3169 3516 9.123902 CATTTATCTGAAATGTAGGTGGATGAA 57.876 33.333 2.52 0.00 34.01 2.57
3175 3522 7.669304 TCTGAAATGTAGGTGGATGAATTCAAA 59.331 33.333 13.09 0.00 0.00 2.69
3181 3528 7.999679 TGTAGGTGGATGAATTCAAATCAATC 58.000 34.615 13.09 4.07 0.00 2.67
3205 3552 6.931281 TCGAGAAATTCAAGATCTTCAACACT 59.069 34.615 4.57 0.00 0.00 3.55
3211 3558 9.736023 AAATTCAAGATCTTCAACACTAACAAC 57.264 29.630 4.57 0.00 0.00 3.32
3232 3579 8.324163 ACAACCTGTAAGTGAATTCATAGTTC 57.676 34.615 12.12 0.00 0.00 3.01
3284 3632 7.931407 TGATTGTTATATAACACAGCTACCTGG 59.069 37.037 24.60 0.00 45.01 4.45
3285 3633 7.426606 TTGTTATATAACACAGCTACCTGGA 57.573 36.000 24.60 6.06 45.01 3.86
3288 3636 7.931407 TGTTATATAACACAGCTACCTGGATTG 59.069 37.037 21.73 0.00 40.93 2.67
3390 3738 9.651718 CGAAGGTAATAATGCATTTTAGAGAAC 57.348 33.333 18.75 6.71 0.00 3.01
3704 4053 1.679944 CCGGTGAAGGCAACATCAGAT 60.680 52.381 0.00 0.00 46.42 2.90
3716 4065 4.659088 CAACATCAGATTTGCAGCTAGTG 58.341 43.478 0.00 0.00 0.00 2.74
3814 4163 5.737635 GCAGTCTGATCTGTATACCTTGGTC 60.738 48.000 3.32 0.00 37.70 4.02
4215 4566 5.139001 TCAATGCATGCATTACCTGGATAA 58.861 37.500 38.08 13.77 43.92 1.75
4255 4610 8.969260 TCATATGATTGCTGTTCTGACTTATT 57.031 30.769 0.00 0.00 0.00 1.40
4622 4983 8.852135 TCTGGGTAACAAACTAAAACCTTATTG 58.148 33.333 0.00 0.00 39.74 1.90
4623 4984 8.763984 TGGGTAACAAACTAAAACCTTATTGA 57.236 30.769 0.00 0.00 39.74 2.57
4624 4985 8.852135 TGGGTAACAAACTAAAACCTTATTGAG 58.148 33.333 0.00 0.00 39.74 3.02
4625 4986 9.070179 GGGTAACAAACTAAAACCTTATTGAGA 57.930 33.333 0.00 0.00 39.74 3.27
4631 4992 8.792633 CAAACTAAAACCTTATTGAGATGTCCA 58.207 33.333 0.00 0.00 0.00 4.02
4632 4993 9.533831 AAACTAAAACCTTATTGAGATGTCCAT 57.466 29.630 0.00 0.00 0.00 3.41
4634 4995 9.178758 ACTAAAACCTTATTGAGATGTCCATTC 57.821 33.333 0.00 0.00 0.00 2.67
4635 4996 9.177608 CTAAAACCTTATTGAGATGTCCATTCA 57.822 33.333 0.00 0.00 0.00 2.57
4640 5001 7.392673 ACCTTATTGAGATGTCCATTCATATGC 59.607 37.037 0.00 0.00 0.00 3.14
4653 5016 6.101442 TCCATTCATATGCCCCAATCAAAAAT 59.899 34.615 0.00 0.00 0.00 1.82
4680 5043 3.018856 TGCTAGCACCATCCATCTTTTG 58.981 45.455 14.93 0.00 0.00 2.44
4767 5130 3.844577 GCATCAGAACATGCTGACTTT 57.155 42.857 5.31 0.00 46.72 2.66
4781 5144 3.242543 GCTGACTTTACAATGGCAGATCG 60.243 47.826 13.37 0.00 40.60 3.69
4942 5305 5.630415 TTTACTCCCTCTGTCCCATAATG 57.370 43.478 0.00 0.00 0.00 1.90
4949 5312 4.501571 CCCTCTGTCCCATAATGTAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
5095 5490 5.286438 CCAACGTTTCGATATATGTCCAGA 58.714 41.667 0.00 0.00 0.00 3.86
5146 5546 4.521130 ACAGCTCTCGTTGATAAGAACA 57.479 40.909 0.00 0.00 0.00 3.18
5306 5711 0.381089 CTAGCATCAGCCTGCAAAGC 59.619 55.000 6.33 0.04 44.77 3.51
5475 5883 3.153919 ACCAACACACAAACAGAACAGT 58.846 40.909 0.00 0.00 0.00 3.55
5503 5912 3.564644 AGGTCAGTATCATACCGAAGACG 59.435 47.826 0.00 0.00 38.37 4.18
5508 5917 6.020837 GTCAGTATCATACCGAAGACGAAAAC 60.021 42.308 0.00 0.00 42.66 2.43
5509 5918 5.803461 CAGTATCATACCGAAGACGAAAACA 59.197 40.000 0.00 0.00 42.66 2.83
5510 5919 5.803967 AGTATCATACCGAAGACGAAAACAC 59.196 40.000 0.00 0.00 42.66 3.32
5512 5921 1.769733 TACCGAAGACGAAAACACCG 58.230 50.000 0.00 0.00 42.66 4.94
5513 5922 0.877213 ACCGAAGACGAAAACACCGG 60.877 55.000 0.00 0.00 42.66 5.28
5514 5923 0.598158 CCGAAGACGAAAACACCGGA 60.598 55.000 9.46 0.00 42.66 5.14
5515 5924 1.425412 CGAAGACGAAAACACCGGAT 58.575 50.000 9.46 0.00 42.66 4.18
5517 5926 2.988493 CGAAGACGAAAACACCGGATTA 59.012 45.455 9.46 0.00 42.66 1.75
5518 5927 3.615496 CGAAGACGAAAACACCGGATTAT 59.385 43.478 9.46 0.00 42.66 1.28
5519 5928 4.259690 CGAAGACGAAAACACCGGATTATC 60.260 45.833 9.46 0.00 42.66 1.75
5521 5930 4.181578 AGACGAAAACACCGGATTATCTG 58.818 43.478 9.46 0.00 0.00 2.90
5529 5938 2.620251 CCGGATTATCTGGCTTCACA 57.380 50.000 7.19 0.00 35.89 3.58
5530 5939 3.131709 CCGGATTATCTGGCTTCACAT 57.868 47.619 7.19 0.00 35.89 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 0.528684 CCGATGCCCTCTTCTTCGAC 60.529 60.000 0.00 0.00 34.37 4.20
134 135 0.174845 GTCGTCGATTCATCACCCCA 59.825 55.000 0.00 0.00 0.00 4.96
152 153 2.492088 TCTGAGTTTGATGTCGATCGGT 59.508 45.455 16.41 1.44 0.00 4.69
156 157 3.259374 ACAGGTCTGAGTTTGATGTCGAT 59.741 43.478 4.84 0.00 0.00 3.59
196 198 9.816354 CTCCCTAAAGAAAATTTGACAAAAAGA 57.184 29.630 4.41 0.00 0.00 2.52
197 199 9.599866 ACTCCCTAAAGAAAATTTGACAAAAAG 57.400 29.630 4.41 0.00 0.00 2.27
202 204 8.359642 CAATGACTCCCTAAAGAAAATTTGACA 58.640 33.333 0.00 0.00 0.00 3.58
203 205 8.360390 ACAATGACTCCCTAAAGAAAATTTGAC 58.640 33.333 0.00 0.00 0.00 3.18
227 232 2.029200 TCGTCGCCCTACAACAAATACA 60.029 45.455 0.00 0.00 0.00 2.29
230 235 2.172851 TTCGTCGCCCTACAACAAAT 57.827 45.000 0.00 0.00 0.00 2.32
239 244 3.912907 CCGCCTATTCGTCGCCCT 61.913 66.667 0.00 0.00 0.00 5.19
243 248 0.232303 GAAATGCCGCCTATTCGTCG 59.768 55.000 0.00 0.00 0.00 5.12
261 268 7.066781 GGAGAACATTATTCCTAAATTGGGGA 58.933 38.462 0.00 0.00 0.00 4.81
268 275 5.815740 GCGTGAGGAGAACATTATTCCTAAA 59.184 40.000 0.00 0.00 41.32 1.85
285 292 6.315393 ACCAACATAAAGTAAATAGCGTGAGG 59.685 38.462 0.00 0.00 0.00 3.86
322 330 3.687321 CTCCACCCACCATCCGCTG 62.687 68.421 0.00 0.00 0.00 5.18
323 331 3.402681 CTCCACCCACCATCCGCT 61.403 66.667 0.00 0.00 0.00 5.52
327 335 1.377725 CACAGCTCCACCCACCATC 60.378 63.158 0.00 0.00 0.00 3.51
332 340 3.471620 GAGACACAGCTCCACCCA 58.528 61.111 0.00 0.00 0.00 4.51
339 347 3.753434 CTCGCCGGAGACACAGCT 61.753 66.667 5.05 0.00 43.27 4.24
349 357 1.726533 GGTCCTAGAAGTCTCGCCGG 61.727 65.000 0.00 0.00 0.00 6.13
369 377 3.365565 CCATTGAAAACCTAAACGGACCG 60.366 47.826 13.61 13.61 36.31 4.79
375 383 4.862574 GCCGAATCCATTGAAAACCTAAAC 59.137 41.667 0.00 0.00 0.00 2.01
380 388 1.134818 GGGCCGAATCCATTGAAAACC 60.135 52.381 0.00 0.00 0.00 3.27
388 396 1.823899 GAAAGCGGGCCGAATCCAT 60.824 57.895 33.44 8.57 0.00 3.41
397 405 0.179174 CAAATACCACGAAAGCGGGC 60.179 55.000 0.00 0.00 40.32 6.13
399 407 1.396996 CTCCAAATACCACGAAAGCGG 59.603 52.381 0.00 0.00 43.17 5.52
400 408 2.073816 ACTCCAAATACCACGAAAGCG 58.926 47.619 0.00 0.00 44.79 4.68
407 425 4.395231 GCTTGTAGGAACTCCAAATACCAC 59.605 45.833 0.00 0.00 32.86 4.16
412 430 4.917906 AGAGCTTGTAGGAACTCCAAAT 57.082 40.909 0.00 0.00 32.86 2.32
441 459 0.108963 TCGCCCCGGAGAAAGAAAAA 59.891 50.000 0.73 0.00 0.00 1.94
446 464 2.573609 AATCGTCGCCCCGGAGAAAG 62.574 60.000 0.73 0.00 0.00 2.62
453 471 1.423845 CAAGAAAATCGTCGCCCCG 59.576 57.895 0.00 0.00 0.00 5.73
467 485 4.037446 GCCAACAACAACAATCTACCAAGA 59.963 41.667 0.00 0.00 35.80 3.02
471 489 2.292292 ACGCCAACAACAACAATCTACC 59.708 45.455 0.00 0.00 0.00 3.18
472 490 3.551551 GACGCCAACAACAACAATCTAC 58.448 45.455 0.00 0.00 0.00 2.59
473 491 2.222213 CGACGCCAACAACAACAATCTA 59.778 45.455 0.00 0.00 0.00 1.98
481 499 2.962786 CCGTCGACGCCAACAACA 60.963 61.111 31.73 0.00 38.18 3.33
483 501 4.595538 AGCCGTCGACGCCAACAA 62.596 61.111 31.73 0.00 38.18 2.83
486 504 3.909258 GAGAAGCCGTCGACGCCAA 62.909 63.158 31.73 0.00 38.18 4.52
499 517 2.223735 TGTAGAATTAGCGGCCGAGAAG 60.224 50.000 33.48 0.00 0.00 2.85
502 520 2.218953 TTGTAGAATTAGCGGCCGAG 57.781 50.000 33.48 0.00 0.00 4.63
503 521 2.093869 AGTTTGTAGAATTAGCGGCCGA 60.094 45.455 33.48 8.89 0.00 5.54
505 523 2.612672 GGAGTTTGTAGAATTAGCGGCC 59.387 50.000 0.00 0.00 0.00 6.13
508 526 3.306166 CACGGGAGTTTGTAGAATTAGCG 59.694 47.826 0.00 0.00 44.67 4.26
509 527 4.251268 ACACGGGAGTTTGTAGAATTAGC 58.749 43.478 0.00 0.00 44.67 3.09
513 534 4.710324 TGAAACACGGGAGTTTGTAGAAT 58.290 39.130 0.00 0.00 44.67 2.40
527 548 3.001168 CGGAGCAAACTTTTTGAAACACG 60.001 43.478 2.80 0.00 0.00 4.49
529 550 4.181309 ACGGAGCAAACTTTTTGAAACA 57.819 36.364 2.80 0.00 0.00 2.83
567 588 2.341543 CATAGCTCGATGCCGCCT 59.658 61.111 0.00 0.00 44.23 5.52
583 604 4.994201 GACGGCGTGTCGTGAGCA 62.994 66.667 21.19 0.00 43.96 4.26
682 704 7.634210 GCCGGCCCTATATTAAGTATCACAATA 60.634 40.741 18.11 0.00 0.00 1.90
701 723 1.989706 TATTTGAAATAGGCCGGCCC 58.010 50.000 41.72 26.08 36.58 5.80
706 728 9.561069 TCATCTACTCTTTATTTGAAATAGGCC 57.439 33.333 0.00 0.00 0.00 5.19
722 747 5.515886 GGTCCCACTAGCTATCATCTACTCT 60.516 48.000 0.00 0.00 0.00 3.24
723 748 4.703093 GGTCCCACTAGCTATCATCTACTC 59.297 50.000 0.00 0.00 0.00 2.59
725 750 4.668636 AGGTCCCACTAGCTATCATCTAC 58.331 47.826 0.00 0.00 0.00 2.59
771 801 8.458843 TCTTGACAGCTAAAAATTAATAGTGCC 58.541 33.333 0.00 0.00 0.00 5.01
790 820 5.668471 TGCCATTCAACAAAAATCTTGACA 58.332 33.333 0.00 0.00 0.00 3.58
803 834 4.085107 CGTTAACAAGCTTTGCCATTCAAC 60.085 41.667 6.39 0.00 33.73 3.18
808 839 1.960689 ACCGTTAACAAGCTTTGCCAT 59.039 42.857 6.39 0.00 0.00 4.40
809 840 1.335496 GACCGTTAACAAGCTTTGCCA 59.665 47.619 6.39 0.00 0.00 4.92
832 863 4.494400 GCGCGCGAAGTTAACGGG 62.494 66.667 37.18 0.00 44.26 5.28
870 902 5.277828 GCTGGCTATTTATACAAGGGAAACG 60.278 44.000 0.00 0.00 0.00 3.60
921 953 2.227194 GAGAAGAGGAGGATCGAGGAC 58.773 57.143 0.00 0.00 34.37 3.85
922 954 1.847088 TGAGAAGAGGAGGATCGAGGA 59.153 52.381 0.00 0.00 34.37 3.71
975 1017 2.627945 GTTGCGAGAGAGAGAGAGAGA 58.372 52.381 0.00 0.00 0.00 3.10
976 1018 1.327460 CGTTGCGAGAGAGAGAGAGAG 59.673 57.143 0.00 0.00 0.00 3.20
977 1019 1.066787 TCGTTGCGAGAGAGAGAGAGA 60.067 52.381 0.00 0.00 0.00 3.10
1063 1106 2.564553 ATTGACAGGGAGCGAGCGAC 62.565 60.000 0.00 0.00 0.00 5.19
1070 1113 1.519455 CGTCCGATTGACAGGGAGC 60.519 63.158 0.00 0.00 44.71 4.70
1144 1187 5.091431 CAGAGAAAGAAATTAAGCAAGCGG 58.909 41.667 0.00 0.00 0.00 5.52
1162 1205 2.049156 CGCAACGAGGCACAGAGA 60.049 61.111 0.00 0.00 0.00 3.10
1163 1206 2.356313 ACGCAACGAGGCACAGAG 60.356 61.111 0.00 0.00 0.00 3.35
1164 1207 2.661537 CACGCAACGAGGCACAGA 60.662 61.111 0.00 0.00 0.00 3.41
1171 1214 4.415501 GTCGCTGCACGCAACGAG 62.416 66.667 16.96 0.00 43.67 4.18
1238 1281 5.164233 TGCAACACGAAGAAAGAGAGATAG 58.836 41.667 0.00 0.00 0.00 2.08
1239 1282 5.134202 TGCAACACGAAGAAAGAGAGATA 57.866 39.130 0.00 0.00 0.00 1.98
1240 1283 3.995199 TGCAACACGAAGAAAGAGAGAT 58.005 40.909 0.00 0.00 0.00 2.75
1241 1284 3.452755 TGCAACACGAAGAAAGAGAGA 57.547 42.857 0.00 0.00 0.00 3.10
1242 1285 3.742882 TGATGCAACACGAAGAAAGAGAG 59.257 43.478 0.00 0.00 0.00 3.20
1253 1296 1.298157 ACCATCGGTGATGCAACACG 61.298 55.000 19.36 14.72 41.12 4.49
1285 1328 2.862541 CCAACCATGGTCAGAACTCAA 58.137 47.619 20.07 0.00 42.18 3.02
1332 1401 0.250234 CCCACTCGATTTGCTCCTCA 59.750 55.000 0.00 0.00 0.00 3.86
1389 1458 2.103736 GCCGCTAGGGTGTCGTAC 59.896 66.667 6.02 0.00 38.44 3.67
1463 1535 0.878961 AGTTTGGTGCCGAAGACGAC 60.879 55.000 0.00 0.00 42.66 4.34
1477 1555 4.505191 CAGGTCAGCACAAAATTCAGTTTG 59.495 41.667 0.00 0.00 42.93 2.93
1491 1569 1.423584 TTTCAGGAGACAGGTCAGCA 58.576 50.000 1.84 0.00 0.00 4.41
1492 1570 2.550830 TTTTCAGGAGACAGGTCAGC 57.449 50.000 1.84 0.00 0.00 4.26
1623 1705 8.659527 ACCATATGTGTGGATAAGATGAATGTA 58.340 33.333 2.59 0.00 42.02 2.29
1686 1771 1.304217 ACCTCGATGACCGACCTGT 60.304 57.895 0.00 0.00 43.23 4.00
1829 1927 4.083271 GCAGCCTTACAAAAACAGGTAGAG 60.083 45.833 0.00 0.00 0.00 2.43
1844 1976 2.038952 AGTGTCAGTGAATGCAGCCTTA 59.961 45.455 0.00 0.00 0.00 2.69
1845 1977 1.202855 AGTGTCAGTGAATGCAGCCTT 60.203 47.619 0.00 0.00 0.00 4.35
1846 1978 0.399454 AGTGTCAGTGAATGCAGCCT 59.601 50.000 0.00 0.00 0.00 4.58
1847 1979 0.520404 CAGTGTCAGTGAATGCAGCC 59.480 55.000 0.96 0.00 0.00 4.85
1848 1980 1.233019 ACAGTGTCAGTGAATGCAGC 58.767 50.000 14.73 0.00 0.00 5.25
1849 1981 3.562973 AGAAACAGTGTCAGTGAATGCAG 59.437 43.478 14.73 0.00 0.00 4.41
1850 1982 3.544684 AGAAACAGTGTCAGTGAATGCA 58.455 40.909 14.73 0.00 0.00 3.96
1851 1983 4.558538 AAGAAACAGTGTCAGTGAATGC 57.441 40.909 14.73 1.86 0.00 3.56
1852 1984 7.967854 TGTAAAAAGAAACAGTGTCAGTGAATG 59.032 33.333 14.73 0.00 0.00 2.67
1853 1985 8.050778 TGTAAAAAGAAACAGTGTCAGTGAAT 57.949 30.769 14.73 2.42 0.00 2.57
1854 1986 7.441890 TGTAAAAAGAAACAGTGTCAGTGAA 57.558 32.000 14.73 0.00 0.00 3.18
1855 1987 7.072177 CTGTAAAAAGAAACAGTGTCAGTGA 57.928 36.000 14.73 0.00 38.62 3.41
1953 2085 2.509052 TGGCGATTGATCTACCTTCG 57.491 50.000 0.00 0.00 0.00 3.79
2003 2135 7.686438 AAAAATGTTTTTCAAACAGGCTTCT 57.314 28.000 8.00 0.00 35.61 2.85
2142 2290 5.268118 TGAGCATACATACCTGACTGAAG 57.732 43.478 0.00 0.00 0.00 3.02
2283 2432 5.045012 AGAATTTGCTGATCAGGCTATGA 57.955 39.130 23.89 5.23 43.70 2.15
2287 2436 3.428532 ACAAGAATTTGCTGATCAGGCT 58.571 40.909 23.89 1.16 37.85 4.58
2316 2465 9.522804 GAGGTAGTTAAGATTAATCTGTGACTG 57.477 37.037 24.59 0.00 37.19 3.51
2453 2605 7.010460 GGAAACTTGTGATGAAAACTTTTCCTG 59.990 37.037 11.03 0.00 37.53 3.86
2454 2606 7.041721 GGAAACTTGTGATGAAAACTTTTCCT 58.958 34.615 11.03 2.24 37.53 3.36
2471 2626 6.070897 TGATGTTACATGTGTGGAAACTTG 57.929 37.500 9.11 0.00 27.62 3.16
2493 2651 6.649973 TCCCTGCAATTGTCAAAATAACAATG 59.350 34.615 7.40 0.04 44.44 2.82
2502 2660 5.350504 TTCTTTTCCCTGCAATTGTCAAA 57.649 34.783 7.40 0.00 0.00 2.69
2505 2663 5.095490 CGTATTCTTTTCCCTGCAATTGTC 58.905 41.667 7.40 0.07 0.00 3.18
2508 2670 5.722021 AACGTATTCTTTTCCCTGCAATT 57.278 34.783 0.00 0.00 0.00 2.32
2548 2710 1.202371 TCGACTATAGCGCCCAAGTTG 60.202 52.381 2.29 9.14 0.00 3.16
2680 2853 5.227238 CAGTATTCATTCTGCTTGTGGAC 57.773 43.478 0.00 0.00 0.00 4.02
2741 3074 7.596995 TCTTCGCCAACAAACCAAATTTAATAG 59.403 33.333 0.00 0.00 0.00 1.73
2742 3075 7.434492 TCTTCGCCAACAAACCAAATTTAATA 58.566 30.769 0.00 0.00 0.00 0.98
2762 3095 4.065789 AGGAAGGCTGTTAAACTTCTTCG 58.934 43.478 0.00 0.00 40.25 3.79
2763 3096 5.531287 TGAAGGAAGGCTGTTAAACTTCTTC 59.469 40.000 0.00 0.00 40.25 2.87
2770 3103 3.876309 ACCTGAAGGAAGGCTGTTAAA 57.124 42.857 2.62 0.00 41.46 1.52
2803 3136 0.523072 CACCTTTCACATCGGCCAAG 59.477 55.000 2.24 0.00 0.00 3.61
2865 3202 0.517316 GCTGCGACAAGGAACGAAAT 59.483 50.000 0.00 0.00 0.00 2.17
2870 3207 1.202076 GCTTATGCTGCGACAAGGAAC 60.202 52.381 8.96 0.00 36.03 3.62
2934 3271 4.944317 GCCTACTCCTAAAAGAGCATGTTT 59.056 41.667 0.00 0.00 37.39 2.83
2935 3272 4.019321 TGCCTACTCCTAAAAGAGCATGTT 60.019 41.667 0.00 0.00 37.39 2.71
2936 3273 3.519510 TGCCTACTCCTAAAAGAGCATGT 59.480 43.478 0.00 0.00 37.39 3.21
2937 3274 4.142609 TGCCTACTCCTAAAAGAGCATG 57.857 45.455 0.00 0.00 37.39 4.06
2938 3275 5.379706 AATGCCTACTCCTAAAAGAGCAT 57.620 39.130 0.00 0.00 41.21 3.79
2939 3276 4.844349 AATGCCTACTCCTAAAAGAGCA 57.156 40.909 0.00 0.00 37.39 4.26
2940 3277 5.432645 AGAAATGCCTACTCCTAAAAGAGC 58.567 41.667 0.00 0.00 37.39 4.09
2941 3278 6.644347 TGAGAAATGCCTACTCCTAAAAGAG 58.356 40.000 0.00 0.00 39.91 2.85
2942 3279 6.620877 TGAGAAATGCCTACTCCTAAAAGA 57.379 37.500 0.00 0.00 0.00 2.52
2943 3280 7.872113 AATGAGAAATGCCTACTCCTAAAAG 57.128 36.000 0.00 0.00 0.00 2.27
2944 3281 8.109634 AGAAATGAGAAATGCCTACTCCTAAAA 58.890 33.333 0.00 0.00 0.00 1.52
2945 3282 7.633789 AGAAATGAGAAATGCCTACTCCTAAA 58.366 34.615 0.00 0.00 0.00 1.85
2946 3283 7.200434 AGAAATGAGAAATGCCTACTCCTAA 57.800 36.000 0.00 0.00 0.00 2.69
2947 3284 6.183361 GGAGAAATGAGAAATGCCTACTCCTA 60.183 42.308 0.00 0.00 37.69 2.94
2948 3285 5.397334 GGAGAAATGAGAAATGCCTACTCCT 60.397 44.000 0.00 0.00 37.69 3.69
2949 3286 4.819088 GGAGAAATGAGAAATGCCTACTCC 59.181 45.833 0.00 0.00 34.51 3.85
2950 3287 5.679601 AGGAGAAATGAGAAATGCCTACTC 58.320 41.667 0.00 0.00 0.00 2.59
2951 3288 5.707066 AGGAGAAATGAGAAATGCCTACT 57.293 39.130 0.00 0.00 0.00 2.57
2952 3289 5.468409 GCTAGGAGAAATGAGAAATGCCTAC 59.532 44.000 0.00 0.00 0.00 3.18
2953 3290 5.367937 AGCTAGGAGAAATGAGAAATGCCTA 59.632 40.000 0.00 0.00 0.00 3.93
2954 3291 4.165758 AGCTAGGAGAAATGAGAAATGCCT 59.834 41.667 0.00 0.00 0.00 4.75
2955 3292 4.459330 AGCTAGGAGAAATGAGAAATGCC 58.541 43.478 0.00 0.00 0.00 4.40
2956 3293 6.448207 AAAGCTAGGAGAAATGAGAAATGC 57.552 37.500 0.00 0.00 0.00 3.56
2957 3294 6.039159 GGGAAAGCTAGGAGAAATGAGAAATG 59.961 42.308 0.00 0.00 0.00 2.32
2958 3295 6.069147 AGGGAAAGCTAGGAGAAATGAGAAAT 60.069 38.462 0.00 0.00 0.00 2.17
2959 3296 5.251700 AGGGAAAGCTAGGAGAAATGAGAAA 59.748 40.000 0.00 0.00 0.00 2.52
2960 3297 4.785376 AGGGAAAGCTAGGAGAAATGAGAA 59.215 41.667 0.00 0.00 0.00 2.87
2961 3298 4.366267 AGGGAAAGCTAGGAGAAATGAGA 58.634 43.478 0.00 0.00 0.00 3.27
2962 3299 4.769345 AGGGAAAGCTAGGAGAAATGAG 57.231 45.455 0.00 0.00 0.00 2.90
2963 3300 6.636454 TTTAGGGAAAGCTAGGAGAAATGA 57.364 37.500 0.00 0.00 0.00 2.57
2967 3304 8.365647 CGTTATATTTAGGGAAAGCTAGGAGAA 58.634 37.037 0.00 0.00 0.00 2.87
2968 3305 7.727186 TCGTTATATTTAGGGAAAGCTAGGAGA 59.273 37.037 0.00 0.00 0.00 3.71
2969 3306 7.813627 GTCGTTATATTTAGGGAAAGCTAGGAG 59.186 40.741 0.00 0.00 0.00 3.69
2970 3307 7.288389 TGTCGTTATATTTAGGGAAAGCTAGGA 59.712 37.037 0.00 0.00 0.00 2.94
2971 3308 7.439381 TGTCGTTATATTTAGGGAAAGCTAGG 58.561 38.462 0.00 0.00 0.00 3.02
2972 3309 8.762426 GTTGTCGTTATATTTAGGGAAAGCTAG 58.238 37.037 0.00 0.00 0.00 3.42
2973 3310 8.259411 TGTTGTCGTTATATTTAGGGAAAGCTA 58.741 33.333 0.00 0.00 0.00 3.32
2974 3311 7.107542 TGTTGTCGTTATATTTAGGGAAAGCT 58.892 34.615 0.00 0.00 0.00 3.74
2975 3312 7.311364 TGTTGTCGTTATATTTAGGGAAAGC 57.689 36.000 0.00 0.00 0.00 3.51
2976 3313 8.943002 ACTTGTTGTCGTTATATTTAGGGAAAG 58.057 33.333 0.00 0.00 0.00 2.62
2977 3314 8.851541 ACTTGTTGTCGTTATATTTAGGGAAA 57.148 30.769 0.00 0.00 0.00 3.13
2978 3315 8.851541 AACTTGTTGTCGTTATATTTAGGGAA 57.148 30.769 0.00 0.00 0.00 3.97
2979 3316 8.851541 AAACTTGTTGTCGTTATATTTAGGGA 57.148 30.769 0.00 0.00 0.00 4.20
2980 3317 8.179615 GGAAACTTGTTGTCGTTATATTTAGGG 58.820 37.037 0.00 0.00 0.00 3.53
2981 3318 8.723311 TGGAAACTTGTTGTCGTTATATTTAGG 58.277 33.333 0.00 0.00 0.00 2.69
3001 3338 8.498358 CAGAAGCTGGAAAAATAAAATGGAAAC 58.502 33.333 0.00 0.00 0.00 2.78
3039 3376 4.292186 ACTTACATGTGCATCAGGAACT 57.708 40.909 9.11 0.00 43.88 3.01
3098 3435 9.582431 TTATCTACAGTAACTGCTGTATGTTTC 57.418 33.333 7.93 0.00 46.81 2.78
3136 3483 8.109634 ACCTACATTTCAGATAAATGTGGAAGT 58.890 33.333 21.35 12.61 45.83 3.01
3148 3495 7.348815 TGAATTCATCCACCTACATTTCAGAT 58.651 34.615 3.38 0.00 0.00 2.90
3156 3503 7.201723 CGATTGATTTGAATTCATCCACCTACA 60.202 37.037 9.40 0.00 0.00 2.74
3157 3504 7.012327 TCGATTGATTTGAATTCATCCACCTAC 59.988 37.037 9.40 0.00 0.00 3.18
3163 3510 9.525409 AATTTCTCGATTGATTTGAATTCATCC 57.475 29.630 9.40 2.37 0.00 3.51
3175 3522 8.728337 TGAAGATCTTGAATTTCTCGATTGAT 57.272 30.769 14.00 0.00 0.00 2.57
3181 3528 7.126726 AGTGTTGAAGATCTTGAATTTCTCG 57.873 36.000 14.00 0.00 0.00 4.04
3205 3552 9.787435 AACTATGAATTCACTTACAGGTTGTTA 57.213 29.630 11.07 0.00 0.00 2.41
3211 3558 8.954950 ATGAGAACTATGAATTCACTTACAGG 57.045 34.615 11.07 0.00 0.00 4.00
3259 3607 8.148351 TCCAGGTAGCTGTGTTATATAACAATC 58.852 37.037 25.98 16.71 46.54 2.67
3275 3623 3.843027 CCCATCTATCAATCCAGGTAGCT 59.157 47.826 0.00 0.00 0.00 3.32
3276 3624 3.584848 ACCCATCTATCAATCCAGGTAGC 59.415 47.826 0.00 0.00 0.00 3.58
3284 3632 4.965814 TCAAGCTCACCCATCTATCAATC 58.034 43.478 0.00 0.00 0.00 2.67
3285 3633 5.374921 CTTCAAGCTCACCCATCTATCAAT 58.625 41.667 0.00 0.00 0.00 2.57
3288 3636 3.737850 CCTTCAAGCTCACCCATCTATC 58.262 50.000 0.00 0.00 0.00 2.08
3338 3686 4.701651 TGGAATGATCTCCATCTTGAGG 57.298 45.455 0.00 0.00 40.71 3.86
3390 3738 7.202016 TGAAGCAATCCTTGTGTAAAAGTAG 57.798 36.000 0.00 0.00 32.78 2.57
3393 3741 6.680810 TCATGAAGCAATCCTTGTGTAAAAG 58.319 36.000 0.00 0.00 32.78 2.27
3412 3760 8.946085 CATAGGTAAAACTAACAAAGCTCATGA 58.054 33.333 6.48 0.00 0.00 3.07
3539 3888 8.661752 AGTAGTAGTTTGTTAGTACCCTGATT 57.338 34.615 0.00 0.00 33.82 2.57
3785 4134 2.238084 TACAGATCAGACTGCAGGGT 57.762 50.000 19.93 0.66 41.06 4.34
3814 4163 4.331137 CATTACGTGTAACAAAGCCATCG 58.669 43.478 0.00 0.00 35.74 3.84
4143 4494 4.024893 ACATGTTGTCTAAGAACTGCAACG 60.025 41.667 0.00 0.00 41.38 4.10
4321 4679 4.139038 GTCACCTTGCCCTACAAAAGTTA 58.861 43.478 0.00 0.00 37.96 2.24
4580 4941 9.308000 TGTTACCCAGAAACTAAATGATGAAAT 57.692 29.630 0.00 0.00 0.00 2.17
4622 4983 3.245016 TGGGGCATATGAATGGACATCTC 60.245 47.826 6.97 0.00 33.38 2.75
4623 4984 2.718062 TGGGGCATATGAATGGACATCT 59.282 45.455 6.97 0.00 33.38 2.90
4624 4985 3.159213 TGGGGCATATGAATGGACATC 57.841 47.619 6.97 0.00 33.38 3.06
4625 4986 3.616343 TTGGGGCATATGAATGGACAT 57.384 42.857 6.97 0.00 33.38 3.06
4626 4987 3.117208 TGATTGGGGCATATGAATGGACA 60.117 43.478 6.97 0.00 33.38 4.02
4627 4988 3.499338 TGATTGGGGCATATGAATGGAC 58.501 45.455 6.97 0.00 33.38 4.02
4628 4989 3.899612 TGATTGGGGCATATGAATGGA 57.100 42.857 6.97 0.00 33.38 3.41
4631 4992 9.563748 CTTAATTTTTGATTGGGGCATATGAAT 57.436 29.630 6.97 0.00 0.00 2.57
4632 4993 7.498570 GCTTAATTTTTGATTGGGGCATATGAA 59.501 33.333 6.97 0.00 0.00 2.57
4634 4995 6.993902 AGCTTAATTTTTGATTGGGGCATATG 59.006 34.615 0.00 0.00 0.00 1.78
4635 4996 6.993902 CAGCTTAATTTTTGATTGGGGCATAT 59.006 34.615 0.00 0.00 0.00 1.78
4640 5001 4.835678 AGCAGCTTAATTTTTGATTGGGG 58.164 39.130 0.00 0.00 0.00 4.96
4653 5016 1.559219 TGGATGGTGCTAGCAGCTTAA 59.441 47.619 38.12 24.21 42.97 1.85
4765 5128 7.624360 AGTAAAATCGATCTGCCATTGTAAA 57.376 32.000 0.00 0.00 0.00 2.01
5121 5516 5.899120 TCTTATCAACGAGAGCTGTAACT 57.101 39.130 0.00 0.00 0.00 2.24
5475 5883 6.123045 TCGGTATGATACTGACCTGATCTA 57.877 41.667 9.97 0.00 39.06 1.98
5503 5912 3.279434 AGCCAGATAATCCGGTGTTTTC 58.721 45.455 0.00 3.16 0.00 2.29
5508 5917 2.213499 GTGAAGCCAGATAATCCGGTG 58.787 52.381 0.00 0.00 0.00 4.94
5509 5918 1.837439 TGTGAAGCCAGATAATCCGGT 59.163 47.619 0.00 0.00 0.00 5.28
5510 5919 2.620251 TGTGAAGCCAGATAATCCGG 57.380 50.000 0.00 0.00 0.00 5.14
5512 5921 3.004106 GCACATGTGAAGCCAGATAATCC 59.996 47.826 29.80 2.30 0.00 3.01
5513 5922 3.881688 AGCACATGTGAAGCCAGATAATC 59.118 43.478 29.80 6.59 0.00 1.75
5514 5923 3.894759 AGCACATGTGAAGCCAGATAAT 58.105 40.909 29.80 0.00 0.00 1.28
5515 5924 3.354948 AGCACATGTGAAGCCAGATAA 57.645 42.857 29.80 0.00 0.00 1.75
5517 5926 2.238144 ACTAGCACATGTGAAGCCAGAT 59.762 45.455 29.80 6.47 0.00 2.90
5518 5927 1.625315 ACTAGCACATGTGAAGCCAGA 59.375 47.619 29.80 4.53 0.00 3.86
5519 5928 2.105006 ACTAGCACATGTGAAGCCAG 57.895 50.000 29.80 14.55 0.00 4.85
5521 5930 2.675348 GAGAACTAGCACATGTGAAGCC 59.325 50.000 29.80 18.00 0.00 4.35
5522 5931 2.675348 GGAGAACTAGCACATGTGAAGC 59.325 50.000 29.80 14.29 0.00 3.86
5529 5938 2.906389 TGGACAAGGAGAACTAGCACAT 59.094 45.455 0.00 0.00 0.00 3.21
5530 5939 2.325484 TGGACAAGGAGAACTAGCACA 58.675 47.619 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.