Multiple sequence alignment - TraesCS6A01G049400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G049400 chr6A 100.000 3095 0 0 1 3095 25313174 25316268 0.000000e+00 5716.0
1 TraesCS6A01G049400 chr6A 97.254 2258 52 7 1 2255 25106444 25108694 0.000000e+00 3818.0
2 TraesCS6A01G049400 chr6A 96.282 2286 45 6 1 2246 25524702 25526987 0.000000e+00 3714.0
3 TraesCS6A01G049400 chr6A 97.959 1960 25 1 287 2246 25580359 25582303 0.000000e+00 3384.0
4 TraesCS6A01G049400 chr6A 97.613 1969 38 1 287 2246 25472022 25473990 0.000000e+00 3367.0
5 TraesCS6A01G049400 chr6A 94.450 1892 70 10 276 2142 25069687 25071568 0.000000e+00 2880.0
6 TraesCS6A01G049400 chr6A 96.669 1501 41 3 1 1498 25202391 25203885 0.000000e+00 2486.0
7 TraesCS6A01G049400 chr6A 96.641 1280 25 5 985 2246 25408352 25409631 0.000000e+00 2109.0
8 TraesCS6A01G049400 chr6A 88.454 1022 79 24 1243 2246 25203705 25204705 0.000000e+00 1197.0
9 TraesCS6A01G049400 chr6A 99.070 430 3 1 2248 2677 25474023 25474451 0.000000e+00 771.0
10 TraesCS6A01G049400 chr6A 97.912 431 6 3 2248 2677 25582336 25582764 0.000000e+00 743.0
11 TraesCS6A01G049400 chr6A 97.685 432 5 4 2248 2677 25409664 25410092 0.000000e+00 737.0
12 TraesCS6A01G049400 chr6A 98.007 301 5 1 1 300 25407482 25407782 3.540000e-144 521.0
13 TraesCS6A01G049400 chr6A 98.456 259 4 0 1 259 25471768 25472026 1.010000e-124 457.0
14 TraesCS6A01G049400 chr6A 98.456 259 4 0 1 259 25580105 25580363 1.010000e-124 457.0
15 TraesCS6A01G049400 chr6A 97.541 244 3 3 2435 2677 25527178 25527419 6.170000e-112 414.0
16 TraesCS6A01G049400 chr6A 95.294 255 8 4 2424 2677 25213412 25213663 4.810000e-108 401.0
17 TraesCS6A01G049400 chr6A 94.510 255 8 4 2424 2677 25137637 25137886 3.740000e-104 388.0
18 TraesCS6A01G049400 chr6A 96.133 181 7 0 2248 2428 25108720 25108900 2.330000e-76 296.0
19 TraesCS6A01G049400 chr6A 96.629 178 6 0 2248 2425 25204738 25204915 2.330000e-76 296.0
20 TraesCS6A01G049400 chr6A 98.113 159 3 0 2248 2406 25527020 25527178 8.450000e-71 278.0
21 TraesCS6A01G049400 chr6A 98.571 70 0 1 3026 3095 25410092 25410160 4.190000e-24 122.0
22 TraesCS6A01G049400 chr6A 98.571 70 0 1 3026 3095 25474451 25474519 4.190000e-24 122.0
23 TraesCS6A01G049400 chr6A 97.183 71 0 2 3026 3095 25582764 25582833 5.420000e-23 119.0
24 TraesCS6A01G049400 chr6A 97.143 70 0 1 3026 3095 25137886 25137953 1.950000e-22 117.0
25 TraesCS6A01G049400 chr6A 97.143 70 0 1 3026 3095 25213663 25213730 1.950000e-22 117.0
26 TraesCS6A01G049400 chr6A 97.143 70 0 1 3026 3095 25527419 25527486 1.950000e-22 117.0
27 TraesCS6A01G049400 chr6A 88.608 79 7 1 1 79 565053040 565053116 9.140000e-16 95.3
28 TraesCS6A01G049400 chrUn 94.407 1645 88 2 483 2127 94374281 94375921 0.000000e+00 2525.0
29 TraesCS6A01G049400 chrUn 94.286 1645 87 4 483 2127 94456416 94458053 0.000000e+00 2510.0
30 TraesCS6A01G049400 chrUn 93.170 1669 86 11 483 2127 94279963 94281627 0.000000e+00 2425.0
31 TraesCS6A01G049400 chrUn 92.870 1669 88 11 483 2127 325949665 325951326 0.000000e+00 2394.0
32 TraesCS6A01G049400 chrUn 92.249 1690 83 20 483 2127 94315886 94317572 0.000000e+00 2351.0
33 TraesCS6A01G049400 chrUn 90.136 1247 95 12 899 2127 94214509 94215745 0.000000e+00 1596.0
34 TraesCS6A01G049400 chrUn 90.222 900 55 14 1261 2127 284307042 284307941 0.000000e+00 1144.0
35 TraesCS6A01G049400 chrUn 89.922 903 55 15 1261 2127 355223290 355224192 0.000000e+00 1131.0
36 TraesCS6A01G049400 chrUn 97.674 129 1 2 2729 2855 246698819 246698947 1.440000e-53 220.0
37 TraesCS6A01G049400 chrUn 99.180 122 1 0 2734 2855 275334545 275334424 1.440000e-53 220.0
38 TraesCS6A01G049400 chrUn 97.674 129 1 2 2729 2855 414476028 414476156 1.440000e-53 220.0
39 TraesCS6A01G049400 chrUn 97.917 96 2 0 2855 2950 189422382 189422287 1.910000e-37 167.0
40 TraesCS6A01G049400 chrUn 97.917 96 2 0 2855 2950 370060049 370059954 1.910000e-37 167.0
41 TraesCS6A01G049400 chrUn 98.925 93 1 0 2855 2947 370060684 370060776 1.910000e-37 167.0
42 TraesCS6A01G049400 chrUn 97.917 96 2 0 2855 2950 399050761 399050666 1.910000e-37 167.0
43 TraesCS6A01G049400 chrUn 98.925 93 1 0 2855 2947 408584275 408584367 1.910000e-37 167.0
44 TraesCS6A01G049400 chrUn 98.765 81 1 0 2948 3028 182435067 182435147 8.950000e-31 145.0
45 TraesCS6A01G049400 chrUn 98.765 81 1 0 2948 3028 182464559 182464639 8.950000e-31 145.0
46 TraesCS6A01G049400 chrUn 98.765 81 1 0 2948 3028 301691313 301691233 8.950000e-31 145.0
47 TraesCS6A01G049400 chrUn 96.774 62 2 0 2677 2738 45081354 45081293 1.520000e-18 104.0
48 TraesCS6A01G049400 chrUn 96.774 62 2 0 2677 2738 182435008 182435069 1.520000e-18 104.0
49 TraesCS6A01G049400 chrUn 96.774 62 2 0 2677 2738 301691372 301691311 1.520000e-18 104.0
50 TraesCS6A01G049400 chr6B 89.992 1279 83 11 483 1725 43520136 43521405 0.000000e+00 1611.0
51 TraesCS6A01G049400 chr6B 88.826 1235 123 3 899 2127 62657570 62658795 0.000000e+00 1502.0
52 TraesCS6A01G049400 chr6B 84.609 1241 126 16 899 2127 43932026 43933213 0.000000e+00 1173.0
53 TraesCS6A01G049400 chr6B 89.873 79 6 1 1 79 149020820 149020744 1.960000e-17 100.0
54 TraesCS6A01G049400 chr6B 84.694 98 14 1 2136 2233 32669246 32669150 2.540000e-16 97.1
55 TraesCS6A01G049400 chr4D 92.442 344 15 6 2345 2677 495450586 495450243 6.000000e-132 481.0
56 TraesCS6A01G049400 chr4D 91.753 194 15 1 89 281 105123154 105122961 5.090000e-68 268.0
57 TraesCS6A01G049400 chr4D 99.091 110 1 0 2136 2245 495451414 495451305 6.770000e-47 198.0
58 TraesCS6A01G049400 chr4D 99.038 104 1 0 2142 2245 495450877 495450774 1.470000e-43 187.0
59 TraesCS6A01G049400 chr4D 94.118 102 6 0 2248 2349 495450740 495450639 4.130000e-34 156.0
60 TraesCS6A01G049400 chr4D 98.765 81 1 0 2948 3028 450996833 450996913 8.950000e-31 145.0
61 TraesCS6A01G049400 chr4D 98.765 81 1 0 2948 3028 451004861 451004781 8.950000e-31 145.0
62 TraesCS6A01G049400 chr4D 95.455 88 4 0 2248 2335 495451271 495451184 1.160000e-29 141.0
63 TraesCS6A01G049400 chr4D 96.774 62 2 0 2677 2738 241389558 241389497 1.520000e-18 104.0
64 TraesCS6A01G049400 chr4D 96.774 62 2 0 2677 2738 450996774 450996835 1.520000e-18 104.0
65 TraesCS6A01G049400 chr4D 96.774 62 2 0 2677 2738 451004920 451004859 1.520000e-18 104.0
66 TraesCS6A01G049400 chr5B 92.708 192 12 2 91 281 659093900 659094090 3.040000e-70 276.0
67 TraesCS6A01G049400 chr5B 99.180 122 1 0 2734 2855 713093930 713093809 1.440000e-53 220.0
68 TraesCS6A01G049400 chr3D 91.045 201 14 4 86 285 441025616 441025813 5.090000e-68 268.0
69 TraesCS6A01G049400 chr3D 97.674 129 1 2 2729 2855 202626044 202626172 1.440000e-53 220.0
70 TraesCS6A01G049400 chr3D 98.925 93 1 0 2855 2947 308528139 308528231 1.910000e-37 167.0
71 TraesCS6A01G049400 chr3D 98.925 93 1 0 2855 2947 569501808 569501900 1.910000e-37 167.0
72 TraesCS6A01G049400 chr3D 87.234 94 7 4 2136 2227 608946224 608946314 5.460000e-18 102.0
73 TraesCS6A01G049400 chr3D 87.234 94 7 4 2136 2227 608975318 608975408 5.460000e-18 102.0
74 TraesCS6A01G049400 chr7B 99.180 122 1 0 2734 2855 742935655 742935534 1.440000e-53 220.0
75 TraesCS6A01G049400 chr6D 97.674 129 1 2 2729 2855 370001449 370001577 1.440000e-53 220.0
76 TraesCS6A01G049400 chr6D 97.674 129 1 2 2729 2855 430467338 430467466 1.440000e-53 220.0
77 TraesCS6A01G049400 chr6D 96.774 62 2 0 2677 2738 108509397 108509458 1.520000e-18 104.0
78 TraesCS6A01G049400 chr5D 99.180 122 1 0 2734 2855 555235719 555235598 1.440000e-53 220.0
79 TraesCS6A01G049400 chr2D 97.917 96 2 0 2855 2950 200934771 200934676 1.910000e-37 167.0
80 TraesCS6A01G049400 chr1D 97.917 96 2 0 2855 2950 159198166 159198071 1.910000e-37 167.0
81 TraesCS6A01G049400 chr7D 98.765 81 1 0 2948 3028 300057761 300057681 8.950000e-31 145.0
82 TraesCS6A01G049400 chr7D 98.765 81 1 0 2948 3028 381953849 381953769 8.950000e-31 145.0
83 TraesCS6A01G049400 chr7D 96.825 63 2 0 2677 2739 19335415 19335353 4.220000e-19 106.0
84 TraesCS6A01G049400 chr4A 98.765 81 1 0 2948 3028 67525109 67525029 8.950000e-31 145.0
85 TraesCS6A01G049400 chr4A 98.765 81 1 0 2948 3028 552079126 552079046 8.950000e-31 145.0
86 TraesCS6A01G049400 chr3A 92.405 79 4 1 1 79 472418346 472418422 9.070000e-21 111.0
87 TraesCS6A01G049400 chr3A 96.774 62 2 0 2677 2738 681273654 681273715 1.520000e-18 104.0
88 TraesCS6A01G049400 chr2B 87.879 99 7 4 2137 2233 699613564 699613469 9.070000e-21 111.0
89 TraesCS6A01G049400 chr2B 85.542 83 10 2 2248 2330 756018306 756018386 5.500000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G049400 chr6A 25313174 25316268 3094 False 5716.000000 5716 100.000000 1 3095 1 chr6A.!!$F2 3094
1 TraesCS6A01G049400 chr6A 25069687 25071568 1881 False 2880.000000 2880 94.450000 276 2142 1 chr6A.!!$F1 1866
2 TraesCS6A01G049400 chr6A 25106444 25108900 2456 False 2057.000000 3818 96.693500 1 2428 2 chr6A.!!$F4 2427
3 TraesCS6A01G049400 chr6A 25202391 25204915 2524 False 1326.333333 2486 93.917333 1 2425 3 chr6A.!!$F6 2424
4 TraesCS6A01G049400 chr6A 25471768 25474519 2751 False 1179.250000 3367 98.427500 1 3095 4 chr6A.!!$F9 3094
5 TraesCS6A01G049400 chr6A 25580105 25582833 2728 False 1175.750000 3384 97.877500 1 3095 4 chr6A.!!$F11 3094
6 TraesCS6A01G049400 chr6A 25524702 25527486 2784 False 1130.750000 3714 97.269750 1 3095 4 chr6A.!!$F10 3094
7 TraesCS6A01G049400 chr6A 25407482 25410160 2678 False 872.250000 2109 97.726000 1 3095 4 chr6A.!!$F8 3094
8 TraesCS6A01G049400 chrUn 94374281 94375921 1640 False 2525.000000 2525 94.407000 483 2127 1 chrUn.!!$F4 1644
9 TraesCS6A01G049400 chrUn 94456416 94458053 1637 False 2510.000000 2510 94.286000 483 2127 1 chrUn.!!$F5 1644
10 TraesCS6A01G049400 chrUn 94279963 94281627 1664 False 2425.000000 2425 93.170000 483 2127 1 chrUn.!!$F2 1644
11 TraesCS6A01G049400 chrUn 325949665 325951326 1661 False 2394.000000 2394 92.870000 483 2127 1 chrUn.!!$F9 1644
12 TraesCS6A01G049400 chrUn 94315886 94317572 1686 False 2351.000000 2351 92.249000 483 2127 1 chrUn.!!$F3 1644
13 TraesCS6A01G049400 chrUn 94214509 94215745 1236 False 1596.000000 1596 90.136000 899 2127 1 chrUn.!!$F1 1228
14 TraesCS6A01G049400 chrUn 284307042 284307941 899 False 1144.000000 1144 90.222000 1261 2127 1 chrUn.!!$F8 866
15 TraesCS6A01G049400 chrUn 355223290 355224192 902 False 1131.000000 1131 89.922000 1261 2127 1 chrUn.!!$F10 866
16 TraesCS6A01G049400 chr6B 43520136 43521405 1269 False 1611.000000 1611 89.992000 483 1725 1 chr6B.!!$F1 1242
17 TraesCS6A01G049400 chr6B 62657570 62658795 1225 False 1502.000000 1502 88.826000 899 2127 1 chr6B.!!$F3 1228
18 TraesCS6A01G049400 chr6B 43932026 43933213 1187 False 1173.000000 1173 84.609000 899 2127 1 chr6B.!!$F2 1228
19 TraesCS6A01G049400 chr4D 495450243 495451414 1171 True 232.600000 481 96.028800 2136 2677 5 chr4D.!!$R4 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 565 3.133003 CCTATAATAGCTAGGCCGTGCAT 59.867 47.826 21.67 11.95 29.93 3.96 F
1198 1308 1.223417 GCCACAATTGCAGCCACAAC 61.223 55.000 5.05 0.00 31.03 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 2086 1.334960 GGCTCGATGGTTGTTGTTGTG 60.335 52.381 0.0 0.0 0.00 3.33 R
2931 3957 0.109086 CGCCGCTGGGATATAGTGAG 60.109 60.000 0.0 0.0 34.06 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.351938 CTCGTTCGGGGCGACACA 62.352 66.667 0.00 0.00 34.89 3.72
461 565 3.133003 CCTATAATAGCTAGGCCGTGCAT 59.867 47.826 21.67 11.95 29.93 3.96
546 650 6.495110 TTACACGTAACAACTTGTAGAACG 57.505 37.500 16.69 16.69 37.24 3.95
904 1013 6.874134 CCAAGAATACACTTGTAAGTAGTGCT 59.126 38.462 0.00 0.00 45.38 4.40
1050 1160 5.371769 TCATCCTTCCTCATCCATCATTCTT 59.628 40.000 0.00 0.00 0.00 2.52
1198 1308 1.223417 GCCACAATTGCAGCCACAAC 61.223 55.000 5.05 0.00 31.03 3.32
1338 1472 5.555966 TCACAACAACCATATCTGCAACTA 58.444 37.500 0.00 0.00 0.00 2.24
1614 1955 5.237779 GCAACAAAGTACTTACCAGCTGTTA 59.762 40.000 16.69 0.00 0.00 2.41
1718 2086 5.989551 ATTCTGCATCAACAACAAAAACC 57.010 34.783 0.00 0.00 0.00 3.27
1820 2209 3.989787 GCAAAACCCACAGGCCCG 61.990 66.667 0.00 0.00 36.11 6.13
2234 3160 5.141182 AGAAATTACTAGCCCTCGATCTGA 58.859 41.667 0.00 0.00 0.00 3.27
2246 3172 5.346281 GCCCTCGATCTGATAAATCTTAACG 59.654 44.000 0.00 0.00 0.00 3.18
2338 3295 7.929348 AAATATATTTGGTAAATGGTGGGCT 57.071 32.000 9.93 0.00 32.38 5.19
2676 3702 2.702592 ACGTGTTGTCCAAGGAAAGA 57.297 45.000 0.00 0.00 0.00 2.52
2677 3703 2.561569 ACGTGTTGTCCAAGGAAAGAG 58.438 47.619 0.00 0.00 0.00 2.85
2678 3704 1.873591 CGTGTTGTCCAAGGAAAGAGG 59.126 52.381 0.00 0.00 0.00 3.69
2679 3705 2.484770 CGTGTTGTCCAAGGAAAGAGGA 60.485 50.000 0.00 0.00 0.00 3.71
2680 3706 3.551846 GTGTTGTCCAAGGAAAGAGGAA 58.448 45.455 0.00 0.00 32.30 3.36
2681 3707 3.565902 GTGTTGTCCAAGGAAAGAGGAAG 59.434 47.826 0.00 0.00 32.30 3.46
2682 3708 3.458118 TGTTGTCCAAGGAAAGAGGAAGA 59.542 43.478 0.00 0.00 32.30 2.87
2683 3709 4.080015 TGTTGTCCAAGGAAAGAGGAAGAA 60.080 41.667 0.00 0.00 32.30 2.52
2684 3710 4.357918 TGTCCAAGGAAAGAGGAAGAAG 57.642 45.455 0.00 0.00 32.30 2.85
2685 3711 3.973973 TGTCCAAGGAAAGAGGAAGAAGA 59.026 43.478 0.00 0.00 32.30 2.87
2686 3712 4.412199 TGTCCAAGGAAAGAGGAAGAAGAA 59.588 41.667 0.00 0.00 32.30 2.52
2687 3713 5.104109 TGTCCAAGGAAAGAGGAAGAAGAAA 60.104 40.000 0.00 0.00 32.30 2.52
2688 3714 5.471797 GTCCAAGGAAAGAGGAAGAAGAAAG 59.528 44.000 0.00 0.00 32.30 2.62
2689 3715 5.132816 TCCAAGGAAAGAGGAAGAAGAAAGT 59.867 40.000 0.00 0.00 0.00 2.66
2690 3716 5.830457 CCAAGGAAAGAGGAAGAAGAAAGTT 59.170 40.000 0.00 0.00 0.00 2.66
2691 3717 6.238869 CCAAGGAAAGAGGAAGAAGAAAGTTG 60.239 42.308 0.00 0.00 0.00 3.16
2692 3718 5.380900 AGGAAAGAGGAAGAAGAAAGTTGG 58.619 41.667 0.00 0.00 0.00 3.77
2693 3719 5.103898 AGGAAAGAGGAAGAAGAAAGTTGGT 60.104 40.000 0.00 0.00 0.00 3.67
2694 3720 5.594725 GGAAAGAGGAAGAAGAAAGTTGGTT 59.405 40.000 0.00 0.00 0.00 3.67
2695 3721 6.096987 GGAAAGAGGAAGAAGAAAGTTGGTTT 59.903 38.462 0.00 0.00 0.00 3.27
2696 3722 6.701145 AAGAGGAAGAAGAAAGTTGGTTTC 57.299 37.500 0.00 0.00 44.48 2.78
2697 3723 5.755849 AGAGGAAGAAGAAAGTTGGTTTCA 58.244 37.500 0.68 0.00 46.29 2.69
2698 3724 5.825151 AGAGGAAGAAGAAAGTTGGTTTCAG 59.175 40.000 0.68 0.00 46.29 3.02
2699 3725 5.510430 AGGAAGAAGAAAGTTGGTTTCAGT 58.490 37.500 0.68 0.00 46.29 3.41
2700 3726 5.358160 AGGAAGAAGAAAGTTGGTTTCAGTG 59.642 40.000 0.68 0.00 46.29 3.66
2701 3727 5.357032 GGAAGAAGAAAGTTGGTTTCAGTGA 59.643 40.000 0.00 0.00 46.29 3.41
2702 3728 6.442513 AAGAAGAAAGTTGGTTTCAGTGAG 57.557 37.500 0.00 0.00 46.29 3.51
2703 3729 5.501156 AGAAGAAAGTTGGTTTCAGTGAGT 58.499 37.500 0.00 0.00 46.29 3.41
2704 3730 5.586643 AGAAGAAAGTTGGTTTCAGTGAGTC 59.413 40.000 0.00 0.00 46.29 3.36
2705 3731 4.843728 AGAAAGTTGGTTTCAGTGAGTCA 58.156 39.130 0.00 0.00 46.29 3.41
2706 3732 5.440610 AGAAAGTTGGTTTCAGTGAGTCAT 58.559 37.500 0.00 0.00 46.29 3.06
2707 3733 5.297776 AGAAAGTTGGTTTCAGTGAGTCATG 59.702 40.000 0.00 0.00 46.29 3.07
2708 3734 4.156455 AGTTGGTTTCAGTGAGTCATGT 57.844 40.909 0.00 0.00 0.00 3.21
2709 3735 3.879295 AGTTGGTTTCAGTGAGTCATGTG 59.121 43.478 0.00 0.00 0.00 3.21
2710 3736 3.836365 TGGTTTCAGTGAGTCATGTGA 57.164 42.857 0.00 0.00 0.00 3.58
2711 3737 4.149511 TGGTTTCAGTGAGTCATGTGAA 57.850 40.909 14.00 14.00 0.00 3.18
2712 3738 4.717877 TGGTTTCAGTGAGTCATGTGAAT 58.282 39.130 17.15 0.00 0.00 2.57
2713 3739 5.132502 TGGTTTCAGTGAGTCATGTGAATT 58.867 37.500 17.15 0.00 0.00 2.17
2714 3740 5.008911 TGGTTTCAGTGAGTCATGTGAATTG 59.991 40.000 17.15 1.48 0.00 2.32
2715 3741 5.009010 GGTTTCAGTGAGTCATGTGAATTGT 59.991 40.000 17.15 0.00 0.00 2.71
2716 3742 6.204688 GGTTTCAGTGAGTCATGTGAATTGTA 59.795 38.462 17.15 4.71 0.00 2.41
2717 3743 7.293745 GTTTCAGTGAGTCATGTGAATTGTAG 58.706 38.462 17.15 0.00 0.00 2.74
2718 3744 6.345096 TCAGTGAGTCATGTGAATTGTAGA 57.655 37.500 0.00 0.00 0.00 2.59
2719 3745 6.758254 TCAGTGAGTCATGTGAATTGTAGAA 58.242 36.000 0.00 0.00 0.00 2.10
2720 3746 6.870439 TCAGTGAGTCATGTGAATTGTAGAAG 59.130 38.462 0.00 0.00 0.00 2.85
2721 3747 6.870439 CAGTGAGTCATGTGAATTGTAGAAGA 59.130 38.462 0.00 0.00 0.00 2.87
2722 3748 7.386025 CAGTGAGTCATGTGAATTGTAGAAGAA 59.614 37.037 0.00 0.00 0.00 2.52
2723 3749 7.933577 AGTGAGTCATGTGAATTGTAGAAGAAA 59.066 33.333 0.00 0.00 0.00 2.52
2724 3750 8.725148 GTGAGTCATGTGAATTGTAGAAGAAAT 58.275 33.333 0.00 0.00 0.00 2.17
2725 3751 9.942850 TGAGTCATGTGAATTGTAGAAGAAATA 57.057 29.630 0.00 0.00 0.00 1.40
2727 3753 9.388506 AGTCATGTGAATTGTAGAAGAAATAGG 57.611 33.333 0.00 0.00 0.00 2.57
2728 3754 9.167311 GTCATGTGAATTGTAGAAGAAATAGGT 57.833 33.333 0.00 0.00 0.00 3.08
2737 3763 7.916914 TGTAGAAGAAATAGGTAAACAAGGC 57.083 36.000 0.00 0.00 0.00 4.35
2738 3764 7.686434 TGTAGAAGAAATAGGTAAACAAGGCT 58.314 34.615 0.00 0.00 0.00 4.58
2739 3765 8.818860 TGTAGAAGAAATAGGTAAACAAGGCTA 58.181 33.333 0.00 0.00 0.00 3.93
2740 3766 9.315525 GTAGAAGAAATAGGTAAACAAGGCTAG 57.684 37.037 0.00 0.00 0.00 3.42
2741 3767 6.824196 AGAAGAAATAGGTAAACAAGGCTAGC 59.176 38.462 6.04 6.04 0.00 3.42
2742 3768 6.314899 AGAAATAGGTAAACAAGGCTAGCT 57.685 37.500 15.72 0.00 0.00 3.32
2743 3769 6.350103 AGAAATAGGTAAACAAGGCTAGCTC 58.650 40.000 15.72 4.82 0.00 4.09
2744 3770 4.691326 ATAGGTAAACAAGGCTAGCTCC 57.309 45.455 15.72 0.00 0.00 4.70
2745 3771 1.560146 AGGTAAACAAGGCTAGCTCCC 59.440 52.381 15.72 0.00 0.00 4.30
2746 3772 1.408405 GGTAAACAAGGCTAGCTCCCC 60.408 57.143 15.72 0.00 0.00 4.81
2747 3773 1.560146 GTAAACAAGGCTAGCTCCCCT 59.440 52.381 15.72 0.00 0.00 4.79
2748 3774 0.329596 AAACAAGGCTAGCTCCCCTG 59.670 55.000 15.72 7.49 0.00 4.45
2749 3775 1.566298 AACAAGGCTAGCTCCCCTGG 61.566 60.000 15.72 3.00 0.00 4.45
2750 3776 2.367512 AAGGCTAGCTCCCCTGGG 60.368 66.667 15.72 5.50 0.00 4.45
2751 3777 4.505970 AGGCTAGCTCCCCTGGGG 62.506 72.222 26.87 26.87 46.11 4.96
2764 3790 3.223674 CCCTGGGGGTTGTCATATTAC 57.776 52.381 4.27 0.00 38.25 1.89
2765 3791 2.512056 CCCTGGGGGTTGTCATATTACA 59.488 50.000 4.27 0.00 38.25 2.41
2766 3792 3.053245 CCCTGGGGGTTGTCATATTACAA 60.053 47.826 4.27 0.00 38.25 2.41
2767 3793 4.387437 CCCTGGGGGTTGTCATATTACAAT 60.387 45.833 4.27 0.00 41.18 2.71
2768 3794 4.827284 CCTGGGGGTTGTCATATTACAATC 59.173 45.833 5.79 5.23 41.18 2.67
2769 3795 5.445069 CTGGGGGTTGTCATATTACAATCA 58.555 41.667 13.61 6.63 41.38 2.57
2770 3796 6.024563 TGGGGGTTGTCATATTACAATCAT 57.975 37.500 13.61 0.00 41.38 2.45
2771 3797 6.439487 TGGGGGTTGTCATATTACAATCATT 58.561 36.000 13.61 0.00 41.38 2.57
2772 3798 6.900186 TGGGGGTTGTCATATTACAATCATTT 59.100 34.615 13.61 0.00 41.38 2.32
2773 3799 7.147759 TGGGGGTTGTCATATTACAATCATTTG 60.148 37.037 13.61 0.00 41.38 2.32
2775 3801 8.908903 GGGGTTGTCATATTACAATCATTTGTA 58.091 33.333 13.61 0.00 44.22 2.41
2789 3815 9.747898 ACAATCATTTGTATTACTTTCCTACCA 57.252 29.630 0.00 0.00 44.22 3.25
2793 3819 9.403583 TCATTTGTATTACTTTCCTACCAATCC 57.596 33.333 0.00 0.00 0.00 3.01
2794 3820 9.408648 CATTTGTATTACTTTCCTACCAATCCT 57.591 33.333 0.00 0.00 0.00 3.24
2795 3821 8.801882 TTTGTATTACTTTCCTACCAATCCTG 57.198 34.615 0.00 0.00 0.00 3.86
2796 3822 7.743116 TGTATTACTTTCCTACCAATCCTGA 57.257 36.000 0.00 0.00 0.00 3.86
2797 3823 8.153221 TGTATTACTTTCCTACCAATCCTGAA 57.847 34.615 0.00 0.00 0.00 3.02
2798 3824 8.044908 TGTATTACTTTCCTACCAATCCTGAAC 58.955 37.037 0.00 0.00 0.00 3.18
2799 3825 6.697641 TTACTTTCCTACCAATCCTGAACT 57.302 37.500 0.00 0.00 0.00 3.01
2800 3826 7.801893 TTACTTTCCTACCAATCCTGAACTA 57.198 36.000 0.00 0.00 0.00 2.24
2801 3827 6.301169 ACTTTCCTACCAATCCTGAACTAG 57.699 41.667 0.00 0.00 0.00 2.57
2802 3828 4.755266 TTCCTACCAATCCTGAACTAGC 57.245 45.455 0.00 0.00 0.00 3.42
2803 3829 3.995636 TCCTACCAATCCTGAACTAGCT 58.004 45.455 0.00 0.00 0.00 3.32
2804 3830 5.138758 TCCTACCAATCCTGAACTAGCTA 57.861 43.478 0.00 0.00 0.00 3.32
2805 3831 5.716979 TCCTACCAATCCTGAACTAGCTAT 58.283 41.667 0.00 0.00 0.00 2.97
2806 3832 5.540337 TCCTACCAATCCTGAACTAGCTATG 59.460 44.000 0.00 0.00 0.00 2.23
2807 3833 5.540337 CCTACCAATCCTGAACTAGCTATGA 59.460 44.000 0.00 0.00 0.00 2.15
2808 3834 5.283457 ACCAATCCTGAACTAGCTATGAC 57.717 43.478 0.00 0.00 0.00 3.06
2809 3835 4.101741 ACCAATCCTGAACTAGCTATGACC 59.898 45.833 0.00 0.00 0.00 4.02
2810 3836 4.503991 CCAATCCTGAACTAGCTATGACCC 60.504 50.000 0.00 0.00 0.00 4.46
2811 3837 3.689872 TCCTGAACTAGCTATGACCCT 57.310 47.619 0.00 0.00 0.00 4.34
2812 3838 3.995636 TCCTGAACTAGCTATGACCCTT 58.004 45.455 0.00 0.00 0.00 3.95
2813 3839 5.138758 TCCTGAACTAGCTATGACCCTTA 57.861 43.478 0.00 0.00 0.00 2.69
2814 3840 5.716979 TCCTGAACTAGCTATGACCCTTAT 58.283 41.667 0.00 0.00 0.00 1.73
2815 3841 6.860034 TCCTGAACTAGCTATGACCCTTATA 58.140 40.000 0.00 0.00 0.00 0.98
2816 3842 6.948886 TCCTGAACTAGCTATGACCCTTATAG 59.051 42.308 0.00 0.00 0.00 1.31
2821 3847 2.882324 GCTATGACCCTTATAGCGAGC 58.118 52.381 0.00 0.00 42.31 5.03
2822 3848 2.417515 GCTATGACCCTTATAGCGAGCC 60.418 54.545 0.00 0.00 42.31 4.70
2823 3849 2.016905 ATGACCCTTATAGCGAGCCT 57.983 50.000 0.00 0.00 0.00 4.58
2824 3850 1.329256 TGACCCTTATAGCGAGCCTC 58.671 55.000 0.00 0.00 0.00 4.70
2825 3851 1.329256 GACCCTTATAGCGAGCCTCA 58.671 55.000 0.00 0.00 0.00 3.86
2826 3852 1.000052 GACCCTTATAGCGAGCCTCAC 60.000 57.143 0.00 0.00 0.00 3.51
2827 3853 1.333177 CCCTTATAGCGAGCCTCACT 58.667 55.000 0.00 0.00 0.00 3.41
2828 3854 1.689273 CCCTTATAGCGAGCCTCACTT 59.311 52.381 0.00 0.00 0.00 3.16
2829 3855 2.103263 CCCTTATAGCGAGCCTCACTTT 59.897 50.000 0.00 0.00 0.00 2.66
2830 3856 3.321111 CCCTTATAGCGAGCCTCACTTTA 59.679 47.826 0.00 0.00 0.00 1.85
2831 3857 4.299978 CCTTATAGCGAGCCTCACTTTAC 58.700 47.826 0.00 0.00 0.00 2.01
2832 3858 2.892784 ATAGCGAGCCTCACTTTACC 57.107 50.000 0.00 0.00 0.00 2.85
2833 3859 0.454600 TAGCGAGCCTCACTTTACCG 59.545 55.000 0.00 0.00 0.00 4.02
2834 3860 1.080025 GCGAGCCTCACTTTACCGT 60.080 57.895 0.00 0.00 0.00 4.83
2835 3861 0.669625 GCGAGCCTCACTTTACCGTT 60.670 55.000 0.00 0.00 0.00 4.44
2836 3862 1.792006 CGAGCCTCACTTTACCGTTT 58.208 50.000 0.00 0.00 0.00 3.60
2837 3863 1.725164 CGAGCCTCACTTTACCGTTTC 59.275 52.381 0.00 0.00 0.00 2.78
2838 3864 2.762745 GAGCCTCACTTTACCGTTTCA 58.237 47.619 0.00 0.00 0.00 2.69
2839 3865 2.737252 GAGCCTCACTTTACCGTTTCAG 59.263 50.000 0.00 0.00 0.00 3.02
2840 3866 2.367567 AGCCTCACTTTACCGTTTCAGA 59.632 45.455 0.00 0.00 0.00 3.27
2841 3867 3.008049 AGCCTCACTTTACCGTTTCAGAT 59.992 43.478 0.00 0.00 0.00 2.90
2842 3868 4.222145 AGCCTCACTTTACCGTTTCAGATA 59.778 41.667 0.00 0.00 0.00 1.98
2843 3869 4.567159 GCCTCACTTTACCGTTTCAGATAG 59.433 45.833 0.00 0.00 0.00 2.08
2844 3870 5.623824 GCCTCACTTTACCGTTTCAGATAGA 60.624 44.000 0.00 0.00 0.00 1.98
2845 3871 6.395629 CCTCACTTTACCGTTTCAGATAGAA 58.604 40.000 0.00 0.00 0.00 2.10
2846 3872 6.872020 CCTCACTTTACCGTTTCAGATAGAAA 59.128 38.462 0.00 0.00 43.71 2.52
2859 3885 8.662781 TTTCAGATAGAAACATATGGCAGTAC 57.337 34.615 7.80 0.00 41.17 2.73
2860 3886 7.603180 TCAGATAGAAACATATGGCAGTACT 57.397 36.000 7.80 0.00 0.00 2.73
2861 3887 7.436933 TCAGATAGAAACATATGGCAGTACTG 58.563 38.462 18.93 18.93 0.00 2.74
2862 3888 7.069950 TCAGATAGAAACATATGGCAGTACTGT 59.930 37.037 23.44 7.20 0.00 3.55
2863 3889 8.360390 CAGATAGAAACATATGGCAGTACTGTA 58.640 37.037 23.44 13.67 0.00 2.74
2864 3890 8.361139 AGATAGAAACATATGGCAGTACTGTAC 58.639 37.037 23.44 16.83 0.00 2.90
2865 3891 5.348986 AGAAACATATGGCAGTACTGTACG 58.651 41.667 23.44 4.29 0.00 3.67
2866 3892 4.730949 AACATATGGCAGTACTGTACGT 57.269 40.909 23.44 18.86 0.00 3.57
2867 3893 5.840243 AACATATGGCAGTACTGTACGTA 57.160 39.130 23.44 20.17 0.00 3.57
2878 3904 5.374142 GTACTGTACGTACTCGAGAGAAG 57.626 47.826 25.12 14.17 44.09 2.85
2879 3905 3.924144 ACTGTACGTACTCGAGAGAAGT 58.076 45.455 25.12 16.24 41.32 3.01
2880 3906 4.314121 ACTGTACGTACTCGAGAGAAGTT 58.686 43.478 25.12 0.00 41.32 2.66
2881 3907 4.152045 ACTGTACGTACTCGAGAGAAGTTG 59.848 45.833 25.12 10.42 41.32 3.16
2882 3908 2.615489 ACGTACTCGAGAGAAGTTGC 57.385 50.000 21.68 0.00 41.32 4.17
2883 3909 2.152830 ACGTACTCGAGAGAAGTTGCT 58.847 47.619 21.68 0.00 41.32 3.91
2884 3910 2.160022 ACGTACTCGAGAGAAGTTGCTC 59.840 50.000 21.68 0.00 41.32 4.26
2885 3911 2.476519 CGTACTCGAGAGAAGTTGCTCC 60.477 54.545 21.68 0.00 41.32 4.70
2886 3912 0.892063 ACTCGAGAGAAGTTGCTCCC 59.108 55.000 21.68 0.00 41.32 4.30
2887 3913 1.181786 CTCGAGAGAAGTTGCTCCCT 58.818 55.000 6.58 0.00 41.32 4.20
2888 3914 1.548269 CTCGAGAGAAGTTGCTCCCTT 59.452 52.381 6.58 0.00 41.32 3.95
2889 3915 1.546476 TCGAGAGAAGTTGCTCCCTTC 59.454 52.381 0.00 0.00 38.87 3.46
2890 3916 1.404851 CGAGAGAAGTTGCTCCCTTCC 60.405 57.143 6.88 1.32 39.29 3.46
2891 3917 1.625818 GAGAGAAGTTGCTCCCTTCCA 59.374 52.381 6.88 0.00 39.29 3.53
2892 3918 2.238395 GAGAGAAGTTGCTCCCTTCCAT 59.762 50.000 6.88 0.00 39.29 3.41
2893 3919 2.026449 AGAGAAGTTGCTCCCTTCCATG 60.026 50.000 6.88 0.00 39.29 3.66
2894 3920 1.988107 AGAAGTTGCTCCCTTCCATGA 59.012 47.619 0.00 0.00 39.29 3.07
2895 3921 2.087646 GAAGTTGCTCCCTTCCATGAC 58.912 52.381 0.00 0.00 33.70 3.06
2896 3922 1.067295 AGTTGCTCCCTTCCATGACA 58.933 50.000 0.00 0.00 0.00 3.58
2897 3923 1.425066 AGTTGCTCCCTTCCATGACAA 59.575 47.619 0.00 0.00 0.00 3.18
2898 3924 1.815003 GTTGCTCCCTTCCATGACAAG 59.185 52.381 0.00 0.00 0.00 3.16
2899 3925 0.329261 TGCTCCCTTCCATGACAAGG 59.671 55.000 13.87 13.87 40.33 3.61
2900 3926 0.620556 GCTCCCTTCCATGACAAGGA 59.379 55.000 19.87 8.98 42.94 3.36
2901 3927 1.680249 GCTCCCTTCCATGACAAGGAC 60.680 57.143 19.87 9.02 42.94 3.85
2902 3928 1.912043 CTCCCTTCCATGACAAGGACT 59.088 52.381 19.87 0.00 42.94 3.85
2903 3929 3.107601 CTCCCTTCCATGACAAGGACTA 58.892 50.000 19.87 8.18 42.94 2.59
2904 3930 3.107601 TCCCTTCCATGACAAGGACTAG 58.892 50.000 19.87 7.61 42.94 2.57
2905 3931 2.840651 CCCTTCCATGACAAGGACTAGT 59.159 50.000 19.87 0.00 42.94 2.57
2906 3932 3.264450 CCCTTCCATGACAAGGACTAGTT 59.736 47.826 19.87 0.00 42.94 2.24
2907 3933 4.469945 CCCTTCCATGACAAGGACTAGTTA 59.530 45.833 19.87 0.00 42.94 2.24
2908 3934 5.045869 CCCTTCCATGACAAGGACTAGTTAA 60.046 44.000 19.87 0.00 42.94 2.01
2909 3935 6.109359 CCTTCCATGACAAGGACTAGTTAAG 58.891 44.000 15.18 0.00 42.94 1.85
2910 3936 6.295916 CCTTCCATGACAAGGACTAGTTAAGT 60.296 42.308 15.18 0.00 42.94 2.24
2911 3937 6.681729 TCCATGACAAGGACTAGTTAAGTT 57.318 37.500 0.00 0.00 39.07 2.66
2912 3938 7.074653 TCCATGACAAGGACTAGTTAAGTTT 57.925 36.000 0.00 0.00 39.07 2.66
2913 3939 7.159372 TCCATGACAAGGACTAGTTAAGTTTC 58.841 38.462 0.00 0.00 39.07 2.78
2914 3940 6.934645 CCATGACAAGGACTAGTTAAGTTTCA 59.065 38.462 0.00 0.00 39.07 2.69
2915 3941 7.095187 CCATGACAAGGACTAGTTAAGTTTCAC 60.095 40.741 0.00 0.00 39.07 3.18
2916 3942 7.120923 TGACAAGGACTAGTTAAGTTTCACT 57.879 36.000 0.00 0.00 39.07 3.41
2917 3943 8.241497 TGACAAGGACTAGTTAAGTTTCACTA 57.759 34.615 0.00 0.00 39.07 2.74
2918 3944 8.867097 TGACAAGGACTAGTTAAGTTTCACTAT 58.133 33.333 0.00 0.00 39.07 2.12
2919 3945 9.356433 GACAAGGACTAGTTAAGTTTCACTATC 57.644 37.037 0.00 0.00 39.07 2.08
2920 3946 9.091220 ACAAGGACTAGTTAAGTTTCACTATCT 57.909 33.333 0.00 0.00 39.07 1.98
2921 3947 9.575783 CAAGGACTAGTTAAGTTTCACTATCTC 57.424 37.037 0.00 0.00 39.07 2.75
2922 3948 8.296211 AGGACTAGTTAAGTTTCACTATCTCC 57.704 38.462 0.00 8.84 39.07 3.71
2923 3949 8.117312 AGGACTAGTTAAGTTTCACTATCTCCT 58.883 37.037 0.00 11.38 39.07 3.69
2924 3950 8.751242 GGACTAGTTAAGTTTCACTATCTCCTT 58.249 37.037 0.00 0.00 39.07 3.36
2929 3955 8.871125 AGTTAAGTTTCACTATCTCCTTTCTCA 58.129 33.333 0.00 0.00 0.00 3.27
2930 3956 9.490379 GTTAAGTTTCACTATCTCCTTTCTCAA 57.510 33.333 0.00 0.00 0.00 3.02
2931 3957 7.971183 AAGTTTCACTATCTCCTTTCTCAAC 57.029 36.000 0.00 0.00 0.00 3.18
2932 3958 7.309770 AGTTTCACTATCTCCTTTCTCAACT 57.690 36.000 0.00 0.00 0.00 3.16
2933 3959 7.382898 AGTTTCACTATCTCCTTTCTCAACTC 58.617 38.462 0.00 0.00 0.00 3.01
2934 3960 6.918067 TTCACTATCTCCTTTCTCAACTCA 57.082 37.500 0.00 0.00 0.00 3.41
2935 3961 6.274157 TCACTATCTCCTTTCTCAACTCAC 57.726 41.667 0.00 0.00 0.00 3.51
2936 3962 6.013379 TCACTATCTCCTTTCTCAACTCACT 58.987 40.000 0.00 0.00 0.00 3.41
2937 3963 7.175797 TCACTATCTCCTTTCTCAACTCACTA 58.824 38.462 0.00 0.00 0.00 2.74
2938 3964 7.836685 TCACTATCTCCTTTCTCAACTCACTAT 59.163 37.037 0.00 0.00 0.00 2.12
2939 3965 9.126151 CACTATCTCCTTTCTCAACTCACTATA 57.874 37.037 0.00 0.00 0.00 1.31
2940 3966 9.875708 ACTATCTCCTTTCTCAACTCACTATAT 57.124 33.333 0.00 0.00 0.00 0.86
2942 3968 7.589958 TCTCCTTTCTCAACTCACTATATCC 57.410 40.000 0.00 0.00 0.00 2.59
2943 3969 6.551601 TCTCCTTTCTCAACTCACTATATCCC 59.448 42.308 0.00 0.00 0.00 3.85
2944 3970 6.202331 TCCTTTCTCAACTCACTATATCCCA 58.798 40.000 0.00 0.00 0.00 4.37
2945 3971 6.325028 TCCTTTCTCAACTCACTATATCCCAG 59.675 42.308 0.00 0.00 0.00 4.45
2946 3972 5.537300 TTCTCAACTCACTATATCCCAGC 57.463 43.478 0.00 0.00 0.00 4.85
2947 3973 3.570125 TCTCAACTCACTATATCCCAGCG 59.430 47.826 0.00 0.00 0.00 5.18
2948 3974 2.628178 TCAACTCACTATATCCCAGCGG 59.372 50.000 0.00 0.00 0.00 5.52
2949 3975 0.969894 ACTCACTATATCCCAGCGGC 59.030 55.000 0.00 0.00 0.00 6.53
2950 3976 0.109086 CTCACTATATCCCAGCGGCG 60.109 60.000 0.51 0.51 0.00 6.46
2951 3977 1.079819 CACTATATCCCAGCGGCGG 60.080 63.158 9.78 0.00 0.00 6.13
2952 3978 1.228769 ACTATATCCCAGCGGCGGA 60.229 57.895 9.78 5.82 0.00 5.54
2953 3979 0.614979 ACTATATCCCAGCGGCGGAT 60.615 55.000 9.78 12.96 42.84 4.18
2954 3980 0.537188 CTATATCCCAGCGGCGGATT 59.463 55.000 13.51 6.00 40.66 3.01
2955 3981 1.754803 CTATATCCCAGCGGCGGATTA 59.245 52.381 13.51 6.66 40.66 1.75
2956 3982 0.981183 ATATCCCAGCGGCGGATTAA 59.019 50.000 13.51 0.00 40.66 1.40
2957 3983 0.981183 TATCCCAGCGGCGGATTAAT 59.019 50.000 13.51 0.00 40.66 1.40
2958 3984 0.981183 ATCCCAGCGGCGGATTAATA 59.019 50.000 9.78 0.00 36.71 0.98
2959 3985 0.981183 TCCCAGCGGCGGATTAATAT 59.019 50.000 9.78 0.00 0.00 1.28
2960 3986 2.181125 TCCCAGCGGCGGATTAATATA 58.819 47.619 9.78 0.00 0.00 0.86
2961 3987 2.769663 TCCCAGCGGCGGATTAATATAT 59.230 45.455 9.78 0.00 0.00 0.86
2962 3988 3.962063 TCCCAGCGGCGGATTAATATATA 59.038 43.478 9.78 0.00 0.00 0.86
2963 3989 4.591498 TCCCAGCGGCGGATTAATATATAT 59.409 41.667 9.78 0.00 0.00 0.86
2964 3990 5.776208 TCCCAGCGGCGGATTAATATATATA 59.224 40.000 9.78 0.00 0.00 0.86
2965 3991 5.867716 CCCAGCGGCGGATTAATATATATAC 59.132 44.000 9.78 0.00 0.00 1.47
2966 3992 5.571741 CCAGCGGCGGATTAATATATATACG 59.428 44.000 9.78 0.00 0.00 3.06
2967 3993 6.147581 CAGCGGCGGATTAATATATATACGT 58.852 40.000 9.78 0.00 0.00 3.57
2968 3994 6.639686 CAGCGGCGGATTAATATATATACGTT 59.360 38.462 9.78 0.00 0.00 3.99
2969 3995 6.639686 AGCGGCGGATTAATATATATACGTTG 59.360 38.462 9.78 0.00 0.00 4.10
2970 3996 6.638063 GCGGCGGATTAATATATATACGTTGA 59.362 38.462 9.78 0.00 0.00 3.18
2971 3997 7.167968 GCGGCGGATTAATATATATACGTTGAA 59.832 37.037 9.78 0.00 0.00 2.69
2972 3998 9.022915 CGGCGGATTAATATATATACGTTGAAA 57.977 33.333 0.00 0.00 0.00 2.69
2981 4007 6.877611 ATATATACGTTGAAAAGCAAGGGG 57.122 37.500 0.00 0.00 44.49 4.79
2982 4008 2.642154 TACGTTGAAAAGCAAGGGGA 57.358 45.000 0.00 0.00 44.49 4.81
2983 4009 1.995376 ACGTTGAAAAGCAAGGGGAT 58.005 45.000 0.00 0.00 44.49 3.85
2984 4010 3.149005 ACGTTGAAAAGCAAGGGGATA 57.851 42.857 0.00 0.00 44.49 2.59
2985 4011 3.492337 ACGTTGAAAAGCAAGGGGATAA 58.508 40.909 0.00 0.00 44.49 1.75
2986 4012 3.892588 ACGTTGAAAAGCAAGGGGATAAA 59.107 39.130 0.00 0.00 44.49 1.40
2987 4013 4.526650 ACGTTGAAAAGCAAGGGGATAAAT 59.473 37.500 0.00 0.00 44.49 1.40
2988 4014 5.011635 ACGTTGAAAAGCAAGGGGATAAATT 59.988 36.000 0.00 0.00 44.49 1.82
2989 4015 5.348451 CGTTGAAAAGCAAGGGGATAAATTG 59.652 40.000 0.00 0.00 38.40 2.32
2990 4016 6.463360 GTTGAAAAGCAAGGGGATAAATTGA 58.537 36.000 0.00 0.00 37.12 2.57
2991 4017 6.678568 TGAAAAGCAAGGGGATAAATTGAA 57.321 33.333 0.00 0.00 0.00 2.69
2992 4018 6.463360 TGAAAAGCAAGGGGATAAATTGAAC 58.537 36.000 0.00 0.00 0.00 3.18
2993 4019 4.718940 AAGCAAGGGGATAAATTGAACG 57.281 40.909 0.00 0.00 0.00 3.95
2994 4020 3.963129 AGCAAGGGGATAAATTGAACGA 58.037 40.909 0.00 0.00 0.00 3.85
2995 4021 4.340617 AGCAAGGGGATAAATTGAACGAA 58.659 39.130 0.00 0.00 0.00 3.85
2996 4022 4.770010 AGCAAGGGGATAAATTGAACGAAA 59.230 37.500 0.00 0.00 0.00 3.46
2997 4023 5.422012 AGCAAGGGGATAAATTGAACGAAAT 59.578 36.000 0.00 0.00 0.00 2.17
2998 4024 5.519927 GCAAGGGGATAAATTGAACGAAATG 59.480 40.000 0.00 0.00 0.00 2.32
2999 4025 6.627065 GCAAGGGGATAAATTGAACGAAATGA 60.627 38.462 0.00 0.00 0.00 2.57
3000 4026 7.319646 CAAGGGGATAAATTGAACGAAATGAA 58.680 34.615 0.00 0.00 0.00 2.57
3001 4027 7.100458 AGGGGATAAATTGAACGAAATGAAG 57.900 36.000 0.00 0.00 0.00 3.02
3002 4028 6.889722 AGGGGATAAATTGAACGAAATGAAGA 59.110 34.615 0.00 0.00 0.00 2.87
3003 4029 7.067494 AGGGGATAAATTGAACGAAATGAAGAG 59.933 37.037 0.00 0.00 0.00 2.85
3004 4030 6.693113 GGGATAAATTGAACGAAATGAAGAGC 59.307 38.462 0.00 0.00 0.00 4.09
3005 4031 7.250569 GGATAAATTGAACGAAATGAAGAGCA 58.749 34.615 0.00 0.00 0.00 4.26
3006 4032 7.754924 GGATAAATTGAACGAAATGAAGAGCAA 59.245 33.333 0.00 0.00 0.00 3.91
3007 4033 9.294030 GATAAATTGAACGAAATGAAGAGCAAT 57.706 29.630 0.00 0.00 0.00 3.56
3008 4034 7.572502 AAATTGAACGAAATGAAGAGCAATC 57.427 32.000 0.00 0.00 0.00 2.67
3009 4035 4.685169 TGAACGAAATGAAGAGCAATCC 57.315 40.909 0.00 0.00 0.00 3.01
3010 4036 4.071423 TGAACGAAATGAAGAGCAATCCA 58.929 39.130 0.00 0.00 0.00 3.41
3011 4037 4.154737 TGAACGAAATGAAGAGCAATCCAG 59.845 41.667 0.00 0.00 0.00 3.86
3012 4038 3.942829 ACGAAATGAAGAGCAATCCAGA 58.057 40.909 0.00 0.00 0.00 3.86
3013 4039 4.326826 ACGAAATGAAGAGCAATCCAGAA 58.673 39.130 0.00 0.00 0.00 3.02
3014 4040 4.946157 ACGAAATGAAGAGCAATCCAGAAT 59.054 37.500 0.00 0.00 0.00 2.40
3015 4041 5.065731 ACGAAATGAAGAGCAATCCAGAATC 59.934 40.000 0.00 0.00 0.00 2.52
3016 4042 5.505324 CGAAATGAAGAGCAATCCAGAATCC 60.505 44.000 0.00 0.00 0.00 3.01
3017 4043 4.792513 ATGAAGAGCAATCCAGAATCCT 57.207 40.909 0.00 0.00 0.00 3.24
3018 4044 5.901413 ATGAAGAGCAATCCAGAATCCTA 57.099 39.130 0.00 0.00 0.00 2.94
3019 4045 5.901413 TGAAGAGCAATCCAGAATCCTAT 57.099 39.130 0.00 0.00 0.00 2.57
3020 4046 6.257994 TGAAGAGCAATCCAGAATCCTATT 57.742 37.500 0.00 0.00 0.00 1.73
3021 4047 6.666678 TGAAGAGCAATCCAGAATCCTATTT 58.333 36.000 0.00 0.00 0.00 1.40
3022 4048 7.121382 TGAAGAGCAATCCAGAATCCTATTTT 58.879 34.615 0.00 0.00 0.00 1.82
3023 4049 6.956202 AGAGCAATCCAGAATCCTATTTTG 57.044 37.500 0.00 0.00 0.00 2.44
3024 4050 6.430007 AGAGCAATCCAGAATCCTATTTTGT 58.570 36.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.571741 CACGTTTCTCATACATTCAGTACGT 59.428 40.000 0.00 0.00 35.05 3.57
269 270 9.569122 GTGCCTCTACTTCCCATTTATATAAAA 57.431 33.333 11.80 0.00 0.00 1.52
270 271 8.945193 AGTGCCTCTACTTCCCATTTATATAAA 58.055 33.333 10.27 10.27 0.00 1.40
271 272 8.506196 AGTGCCTCTACTTCCCATTTATATAA 57.494 34.615 0.00 0.00 0.00 0.98
272 273 7.956315 AGAGTGCCTCTACTTCCCATTTATATA 59.044 37.037 3.19 0.00 39.28 0.86
273 274 6.789959 AGAGTGCCTCTACTTCCCATTTATAT 59.210 38.462 3.19 0.00 39.28 0.86
274 275 6.143915 AGAGTGCCTCTACTTCCCATTTATA 58.856 40.000 3.19 0.00 39.28 0.98
275 276 4.971924 AGAGTGCCTCTACTTCCCATTTAT 59.028 41.667 3.19 0.00 39.28 1.40
276 277 4.362677 AGAGTGCCTCTACTTCCCATTTA 58.637 43.478 3.19 0.00 39.28 1.40
277 278 3.185455 AGAGTGCCTCTACTTCCCATTT 58.815 45.455 3.19 0.00 39.28 2.32
278 279 2.839228 AGAGTGCCTCTACTTCCCATT 58.161 47.619 3.19 0.00 39.28 3.16
279 280 2.503356 CAAGAGTGCCTCTACTTCCCAT 59.497 50.000 5.31 0.00 40.28 4.00
280 281 1.902508 CAAGAGTGCCTCTACTTCCCA 59.097 52.381 5.31 0.00 40.28 4.37
461 565 2.829720 ACTAGTCATCTACCCGTGCAAA 59.170 45.455 0.00 0.00 0.00 3.68
904 1013 7.667635 TCATCATTTGGTATGTTCTGTTTGGTA 59.332 33.333 0.00 0.00 0.00 3.25
1050 1160 6.590292 GGCTTAAATGATGCGCTCTACTAATA 59.410 38.462 9.73 0.00 0.00 0.98
1198 1308 1.022735 GGCTGTTGCTGAGATGGATG 58.977 55.000 0.00 0.00 39.59 3.51
1338 1472 2.625823 CGGCTGCGGAAATGGTTGT 61.626 57.895 0.00 0.00 0.00 3.32
1614 1955 3.181487 GGTGCTGACAACACAATTCTTGT 60.181 43.478 10.94 0.00 46.75 3.16
1718 2086 1.334960 GGCTCGATGGTTGTTGTTGTG 60.335 52.381 0.00 0.00 0.00 3.33
1890 2279 3.357021 GATGTAGACATTGCACATTGCG 58.643 45.455 0.00 0.00 40.83 4.85
2246 3172 5.749462 AGGCCCAGAGCATTATATATGTTC 58.251 41.667 0.00 0.00 46.50 3.18
2338 3295 8.706492 TGTACGTGAGTTCTCTTTTTAAAGAA 57.294 30.769 0.00 0.00 46.40 2.52
2676 3702 5.358160 CACTGAAACCAACTTTCTTCTTCCT 59.642 40.000 0.00 0.00 39.36 3.36
2677 3703 5.357032 TCACTGAAACCAACTTTCTTCTTCC 59.643 40.000 0.00 0.00 39.36 3.46
2678 3704 6.094186 ACTCACTGAAACCAACTTTCTTCTTC 59.906 38.462 0.00 0.00 39.36 2.87
2679 3705 5.946377 ACTCACTGAAACCAACTTTCTTCTT 59.054 36.000 0.00 0.00 39.36 2.52
2680 3706 5.501156 ACTCACTGAAACCAACTTTCTTCT 58.499 37.500 0.00 0.00 39.36 2.85
2681 3707 5.354234 TGACTCACTGAAACCAACTTTCTTC 59.646 40.000 0.00 0.00 39.36 2.87
2682 3708 5.253330 TGACTCACTGAAACCAACTTTCTT 58.747 37.500 0.00 0.00 39.36 2.52
2683 3709 4.843728 TGACTCACTGAAACCAACTTTCT 58.156 39.130 0.00 0.00 39.36 2.52
2684 3710 5.066505 ACATGACTCACTGAAACCAACTTTC 59.933 40.000 0.00 0.00 39.11 2.62
2685 3711 4.949856 ACATGACTCACTGAAACCAACTTT 59.050 37.500 0.00 0.00 0.00 2.66
2686 3712 4.336433 CACATGACTCACTGAAACCAACTT 59.664 41.667 0.00 0.00 0.00 2.66
2687 3713 3.879295 CACATGACTCACTGAAACCAACT 59.121 43.478 0.00 0.00 0.00 3.16
2688 3714 3.876914 TCACATGACTCACTGAAACCAAC 59.123 43.478 0.00 0.00 0.00 3.77
2689 3715 4.149511 TCACATGACTCACTGAAACCAA 57.850 40.909 0.00 0.00 0.00 3.67
2690 3716 3.836365 TCACATGACTCACTGAAACCA 57.164 42.857 0.00 0.00 0.00 3.67
2691 3717 5.009010 ACAATTCACATGACTCACTGAAACC 59.991 40.000 0.00 0.00 0.00 3.27
2692 3718 6.064846 ACAATTCACATGACTCACTGAAAC 57.935 37.500 0.00 0.00 0.00 2.78
2693 3719 7.216494 TCTACAATTCACATGACTCACTGAAA 58.784 34.615 0.00 0.00 0.00 2.69
2694 3720 6.758254 TCTACAATTCACATGACTCACTGAA 58.242 36.000 0.00 0.00 0.00 3.02
2695 3721 6.345096 TCTACAATTCACATGACTCACTGA 57.655 37.500 0.00 0.00 0.00 3.41
2696 3722 6.870439 TCTTCTACAATTCACATGACTCACTG 59.130 38.462 0.00 0.00 0.00 3.66
2697 3723 6.997655 TCTTCTACAATTCACATGACTCACT 58.002 36.000 0.00 0.00 0.00 3.41
2698 3724 7.658179 TTCTTCTACAATTCACATGACTCAC 57.342 36.000 0.00 0.00 0.00 3.51
2699 3725 8.853077 ATTTCTTCTACAATTCACATGACTCA 57.147 30.769 0.00 0.00 0.00 3.41
2701 3727 9.388506 CCTATTTCTTCTACAATTCACATGACT 57.611 33.333 0.00 0.00 0.00 3.41
2702 3728 9.167311 ACCTATTTCTTCTACAATTCACATGAC 57.833 33.333 0.00 0.00 0.00 3.06
2711 3737 8.957466 GCCTTGTTTACCTATTTCTTCTACAAT 58.043 33.333 0.00 0.00 0.00 2.71
2712 3738 8.161425 AGCCTTGTTTACCTATTTCTTCTACAA 58.839 33.333 0.00 0.00 0.00 2.41
2713 3739 7.686434 AGCCTTGTTTACCTATTTCTTCTACA 58.314 34.615 0.00 0.00 0.00 2.74
2714 3740 9.315525 CTAGCCTTGTTTACCTATTTCTTCTAC 57.684 37.037 0.00 0.00 0.00 2.59
2715 3741 7.985752 GCTAGCCTTGTTTACCTATTTCTTCTA 59.014 37.037 2.29 0.00 0.00 2.10
2716 3742 6.824196 GCTAGCCTTGTTTACCTATTTCTTCT 59.176 38.462 2.29 0.00 0.00 2.85
2717 3743 6.824196 AGCTAGCCTTGTTTACCTATTTCTTC 59.176 38.462 12.13 0.00 0.00 2.87
2718 3744 6.722328 AGCTAGCCTTGTTTACCTATTTCTT 58.278 36.000 12.13 0.00 0.00 2.52
2719 3745 6.314899 AGCTAGCCTTGTTTACCTATTTCT 57.685 37.500 12.13 0.00 0.00 2.52
2720 3746 5.527951 GGAGCTAGCCTTGTTTACCTATTTC 59.472 44.000 12.13 0.00 0.00 2.17
2721 3747 5.437946 GGAGCTAGCCTTGTTTACCTATTT 58.562 41.667 12.13 0.00 0.00 1.40
2722 3748 4.141459 GGGAGCTAGCCTTGTTTACCTATT 60.141 45.833 12.13 0.00 0.00 1.73
2723 3749 3.391626 GGGAGCTAGCCTTGTTTACCTAT 59.608 47.826 12.13 0.00 0.00 2.57
2724 3750 2.770232 GGGAGCTAGCCTTGTTTACCTA 59.230 50.000 12.13 0.00 0.00 3.08
2725 3751 1.560146 GGGAGCTAGCCTTGTTTACCT 59.440 52.381 12.13 0.00 0.00 3.08
2726 3752 1.408405 GGGGAGCTAGCCTTGTTTACC 60.408 57.143 12.13 0.93 0.00 2.85
2727 3753 1.560146 AGGGGAGCTAGCCTTGTTTAC 59.440 52.381 12.13 0.00 0.00 2.01
2728 3754 1.559682 CAGGGGAGCTAGCCTTGTTTA 59.440 52.381 12.13 0.00 0.00 2.01
2729 3755 0.329596 CAGGGGAGCTAGCCTTGTTT 59.670 55.000 12.13 0.00 0.00 2.83
2730 3756 1.566298 CCAGGGGAGCTAGCCTTGTT 61.566 60.000 12.13 0.00 0.00 2.83
2731 3757 1.997874 CCAGGGGAGCTAGCCTTGT 60.998 63.158 12.13 0.00 0.00 3.16
2732 3758 2.750657 CCCAGGGGAGCTAGCCTTG 61.751 68.421 12.13 2.74 37.50 3.61
2733 3759 2.367512 CCCAGGGGAGCTAGCCTT 60.368 66.667 12.13 0.00 37.50 4.35
2745 3771 3.943671 TGTAATATGACAACCCCCAGG 57.056 47.619 0.00 0.00 40.04 4.45
2746 3772 5.445069 TGATTGTAATATGACAACCCCCAG 58.555 41.667 7.85 0.00 41.93 4.45
2747 3773 5.458451 TGATTGTAATATGACAACCCCCA 57.542 39.130 7.85 2.19 41.93 4.96
2748 3774 6.976934 AATGATTGTAATATGACAACCCCC 57.023 37.500 7.85 0.00 41.93 5.40
2767 3793 9.403583 GGATTGGTAGGAAAGTAATACAAATGA 57.596 33.333 0.00 0.00 0.00 2.57
2768 3794 9.408648 AGGATTGGTAGGAAAGTAATACAAATG 57.591 33.333 0.00 0.00 0.00 2.32
2769 3795 9.408648 CAGGATTGGTAGGAAAGTAATACAAAT 57.591 33.333 0.00 0.00 0.00 2.32
2770 3796 8.607713 TCAGGATTGGTAGGAAAGTAATACAAA 58.392 33.333 0.00 0.00 0.00 2.83
2771 3797 8.153221 TCAGGATTGGTAGGAAAGTAATACAA 57.847 34.615 0.00 0.00 0.00 2.41
2772 3798 7.743116 TCAGGATTGGTAGGAAAGTAATACA 57.257 36.000 0.00 0.00 0.00 2.29
2773 3799 8.265764 AGTTCAGGATTGGTAGGAAAGTAATAC 58.734 37.037 0.00 0.00 0.00 1.89
2774 3800 8.388656 AGTTCAGGATTGGTAGGAAAGTAATA 57.611 34.615 0.00 0.00 0.00 0.98
2775 3801 7.272144 AGTTCAGGATTGGTAGGAAAGTAAT 57.728 36.000 0.00 0.00 0.00 1.89
2776 3802 6.697641 AGTTCAGGATTGGTAGGAAAGTAA 57.302 37.500 0.00 0.00 0.00 2.24
2777 3803 6.127140 GCTAGTTCAGGATTGGTAGGAAAGTA 60.127 42.308 0.00 0.00 0.00 2.24
2778 3804 5.338463 GCTAGTTCAGGATTGGTAGGAAAGT 60.338 44.000 0.00 0.00 0.00 2.66
2779 3805 5.104735 AGCTAGTTCAGGATTGGTAGGAAAG 60.105 44.000 0.00 0.00 0.00 2.62
2780 3806 4.783227 AGCTAGTTCAGGATTGGTAGGAAA 59.217 41.667 0.00 0.00 0.00 3.13
2781 3807 4.362677 AGCTAGTTCAGGATTGGTAGGAA 58.637 43.478 0.00 0.00 0.00 3.36
2782 3808 3.995636 AGCTAGTTCAGGATTGGTAGGA 58.004 45.455 0.00 0.00 0.00 2.94
2783 3809 5.540337 TCATAGCTAGTTCAGGATTGGTAGG 59.460 44.000 0.00 0.00 0.00 3.18
2784 3810 6.451393 GTCATAGCTAGTTCAGGATTGGTAG 58.549 44.000 0.00 0.00 0.00 3.18
2785 3811 5.304614 GGTCATAGCTAGTTCAGGATTGGTA 59.695 44.000 0.00 0.00 0.00 3.25
2786 3812 4.101741 GGTCATAGCTAGTTCAGGATTGGT 59.898 45.833 0.00 0.00 0.00 3.67
2787 3813 4.503991 GGGTCATAGCTAGTTCAGGATTGG 60.504 50.000 0.00 0.00 0.00 3.16
2788 3814 4.346418 AGGGTCATAGCTAGTTCAGGATTG 59.654 45.833 0.00 0.00 0.00 2.67
2789 3815 4.561752 AGGGTCATAGCTAGTTCAGGATT 58.438 43.478 0.00 0.00 0.00 3.01
2790 3816 4.206244 AGGGTCATAGCTAGTTCAGGAT 57.794 45.455 0.00 0.00 0.00 3.24
2791 3817 3.689872 AGGGTCATAGCTAGTTCAGGA 57.310 47.619 0.00 0.00 0.00 3.86
2792 3818 6.350612 GCTATAAGGGTCATAGCTAGTTCAGG 60.351 46.154 0.00 0.00 44.88 3.86
2793 3819 6.623986 CGCTATAAGGGTCATAGCTAGTTCAG 60.624 46.154 11.38 0.00 45.71 3.02
2794 3820 5.183331 CGCTATAAGGGTCATAGCTAGTTCA 59.817 44.000 11.38 0.00 45.71 3.18
2795 3821 5.415077 TCGCTATAAGGGTCATAGCTAGTTC 59.585 44.000 11.38 0.00 45.71 3.01
2796 3822 5.322754 TCGCTATAAGGGTCATAGCTAGTT 58.677 41.667 11.38 0.00 45.71 2.24
2797 3823 4.919793 TCGCTATAAGGGTCATAGCTAGT 58.080 43.478 11.38 0.00 45.71 2.57
2798 3824 4.201970 GCTCGCTATAAGGGTCATAGCTAG 60.202 50.000 11.38 10.69 45.71 3.42
2799 3825 3.695060 GCTCGCTATAAGGGTCATAGCTA 59.305 47.826 11.38 0.00 45.71 3.32
2800 3826 2.494073 GCTCGCTATAAGGGTCATAGCT 59.506 50.000 11.38 0.00 45.71 3.32
2801 3827 2.417515 GGCTCGCTATAAGGGTCATAGC 60.418 54.545 4.60 4.60 44.86 2.97
2802 3828 3.093057 AGGCTCGCTATAAGGGTCATAG 58.907 50.000 0.00 0.00 0.00 2.23
2803 3829 3.090037 GAGGCTCGCTATAAGGGTCATA 58.910 50.000 0.00 0.00 0.00 2.15
2804 3830 1.896465 GAGGCTCGCTATAAGGGTCAT 59.104 52.381 0.00 0.00 0.00 3.06
2805 3831 1.329256 GAGGCTCGCTATAAGGGTCA 58.671 55.000 0.00 0.00 0.00 4.02
2806 3832 1.000052 GTGAGGCTCGCTATAAGGGTC 60.000 57.143 20.43 0.00 0.00 4.46
2807 3833 1.041437 GTGAGGCTCGCTATAAGGGT 58.959 55.000 20.43 0.00 0.00 4.34
2808 3834 1.333177 AGTGAGGCTCGCTATAAGGG 58.667 55.000 28.10 0.00 35.10 3.95
2809 3835 3.460857 AAAGTGAGGCTCGCTATAAGG 57.539 47.619 29.22 0.00 35.97 2.69
2810 3836 4.299978 GGTAAAGTGAGGCTCGCTATAAG 58.700 47.826 29.22 0.00 35.97 1.73
2811 3837 3.243301 CGGTAAAGTGAGGCTCGCTATAA 60.243 47.826 29.22 15.44 35.97 0.98
2812 3838 2.292569 CGGTAAAGTGAGGCTCGCTATA 59.707 50.000 29.22 8.26 35.97 1.31
2813 3839 1.067212 CGGTAAAGTGAGGCTCGCTAT 59.933 52.381 29.22 16.88 35.97 2.97
2814 3840 0.454600 CGGTAAAGTGAGGCTCGCTA 59.545 55.000 29.22 13.48 35.97 4.26
2815 3841 1.215647 CGGTAAAGTGAGGCTCGCT 59.784 57.895 24.31 24.31 39.20 4.93
2816 3842 0.669625 AACGGTAAAGTGAGGCTCGC 60.670 55.000 20.16 20.16 0.00 5.03
2817 3843 1.725164 GAAACGGTAAAGTGAGGCTCG 59.275 52.381 10.42 0.00 0.00 5.03
2818 3844 2.737252 CTGAAACGGTAAAGTGAGGCTC 59.263 50.000 7.79 7.79 0.00 4.70
2819 3845 2.367567 TCTGAAACGGTAAAGTGAGGCT 59.632 45.455 0.00 0.00 0.00 4.58
2820 3846 2.762745 TCTGAAACGGTAAAGTGAGGC 58.237 47.619 0.00 0.00 0.00 4.70
2821 3847 5.962433 TCTATCTGAAACGGTAAAGTGAGG 58.038 41.667 0.00 0.00 0.00 3.86
2822 3848 7.884816 TTTCTATCTGAAACGGTAAAGTGAG 57.115 36.000 0.00 0.00 39.50 3.51
2834 3860 8.486210 AGTACTGCCATATGTTTCTATCTGAAA 58.514 33.333 0.00 0.00 41.85 2.69
2835 3861 7.928167 CAGTACTGCCATATGTTTCTATCTGAA 59.072 37.037 10.54 0.00 0.00 3.02
2836 3862 7.069950 ACAGTACTGCCATATGTTTCTATCTGA 59.930 37.037 22.90 0.00 0.00 3.27
2837 3863 7.212976 ACAGTACTGCCATATGTTTCTATCTG 58.787 38.462 22.90 5.03 0.00 2.90
2838 3864 7.366847 ACAGTACTGCCATATGTTTCTATCT 57.633 36.000 22.90 0.00 0.00 1.98
2839 3865 7.326305 CGTACAGTACTGCCATATGTTTCTATC 59.674 40.741 22.90 0.00 0.00 2.08
2840 3866 7.145985 CGTACAGTACTGCCATATGTTTCTAT 58.854 38.462 22.90 0.52 0.00 1.98
2841 3867 6.095860 ACGTACAGTACTGCCATATGTTTCTA 59.904 38.462 22.90 0.18 0.00 2.10
2842 3868 5.105473 ACGTACAGTACTGCCATATGTTTCT 60.105 40.000 22.90 1.17 0.00 2.52
2843 3869 5.107133 ACGTACAGTACTGCCATATGTTTC 58.893 41.667 22.90 0.00 0.00 2.78
2844 3870 5.080969 ACGTACAGTACTGCCATATGTTT 57.919 39.130 22.90 2.45 0.00 2.83
2845 3871 4.730949 ACGTACAGTACTGCCATATGTT 57.269 40.909 22.90 3.20 0.00 2.71
2857 3883 5.065704 ACTTCTCTCGAGTACGTACAGTA 57.934 43.478 26.55 10.54 40.69 2.74
2858 3884 3.924144 ACTTCTCTCGAGTACGTACAGT 58.076 45.455 26.55 15.37 40.69 3.55
2859 3885 4.639959 CAACTTCTCTCGAGTACGTACAG 58.360 47.826 26.55 19.25 40.69 2.74
2860 3886 3.120408 GCAACTTCTCTCGAGTACGTACA 60.120 47.826 26.55 6.28 40.69 2.90
2861 3887 3.124976 AGCAACTTCTCTCGAGTACGTAC 59.875 47.826 18.10 18.10 40.69 3.67
2862 3888 3.332919 AGCAACTTCTCTCGAGTACGTA 58.667 45.455 13.13 0.00 40.69 3.57
2863 3889 2.152830 AGCAACTTCTCTCGAGTACGT 58.847 47.619 13.13 3.22 40.69 3.57
2864 3890 2.476519 GGAGCAACTTCTCTCGAGTACG 60.477 54.545 13.13 2.62 41.26 3.67
2865 3891 2.159352 GGGAGCAACTTCTCTCGAGTAC 60.159 54.545 13.13 0.00 33.70 2.73
2866 3892 2.093106 GGGAGCAACTTCTCTCGAGTA 58.907 52.381 13.13 0.00 33.70 2.59
2867 3893 0.892063 GGGAGCAACTTCTCTCGAGT 59.108 55.000 13.13 0.00 33.70 4.18
2868 3894 1.181786 AGGGAGCAACTTCTCTCGAG 58.818 55.000 5.93 5.93 38.59 4.04
2869 3895 1.546476 GAAGGGAGCAACTTCTCTCGA 59.454 52.381 7.54 0.00 40.81 4.04
2870 3896 1.404851 GGAAGGGAGCAACTTCTCTCG 60.405 57.143 12.68 0.00 42.96 4.04
2871 3897 1.625818 TGGAAGGGAGCAACTTCTCTC 59.374 52.381 12.68 0.00 42.96 3.20
2872 3898 1.734655 TGGAAGGGAGCAACTTCTCT 58.265 50.000 12.68 0.00 42.96 3.10
2873 3899 2.026822 TCATGGAAGGGAGCAACTTCTC 60.027 50.000 12.68 6.06 42.96 2.87
2874 3900 1.988107 TCATGGAAGGGAGCAACTTCT 59.012 47.619 12.68 0.00 42.96 2.85
2875 3901 2.087646 GTCATGGAAGGGAGCAACTTC 58.912 52.381 6.53 6.53 42.73 3.01
2876 3902 1.425066 TGTCATGGAAGGGAGCAACTT 59.575 47.619 0.00 0.00 0.00 2.66
2877 3903 1.067295 TGTCATGGAAGGGAGCAACT 58.933 50.000 0.00 0.00 0.00 3.16
2878 3904 1.815003 CTTGTCATGGAAGGGAGCAAC 59.185 52.381 0.00 0.00 0.00 4.17
2879 3905 1.272092 CCTTGTCATGGAAGGGAGCAA 60.272 52.381 13.86 0.00 37.00 3.91
2880 3906 0.329261 CCTTGTCATGGAAGGGAGCA 59.671 55.000 13.86 0.00 37.00 4.26
2881 3907 0.620556 TCCTTGTCATGGAAGGGAGC 59.379 55.000 18.91 0.00 40.52 4.70
2882 3908 1.912043 AGTCCTTGTCATGGAAGGGAG 59.088 52.381 18.91 1.21 40.52 4.30
2883 3909 2.044793 AGTCCTTGTCATGGAAGGGA 57.955 50.000 18.91 9.19 40.52 4.20
2884 3910 2.840651 ACTAGTCCTTGTCATGGAAGGG 59.159 50.000 18.91 7.29 40.52 3.95
2885 3911 4.559862 AACTAGTCCTTGTCATGGAAGG 57.440 45.455 15.01 15.01 41.36 3.46
2886 3912 6.702329 ACTTAACTAGTCCTTGTCATGGAAG 58.298 40.000 8.97 6.92 35.10 3.46
2887 3913 6.681729 ACTTAACTAGTCCTTGTCATGGAA 57.318 37.500 8.97 0.00 35.10 3.53
2888 3914 6.681729 AACTTAACTAGTCCTTGTCATGGA 57.318 37.500 3.33 3.33 35.54 3.41
2889 3915 6.934645 TGAAACTTAACTAGTCCTTGTCATGG 59.065 38.462 0.00 0.00 35.54 3.66
2890 3916 7.797819 GTGAAACTTAACTAGTCCTTGTCATG 58.202 38.462 0.00 0.00 35.54 3.07
2891 3917 7.964604 GTGAAACTTAACTAGTCCTTGTCAT 57.035 36.000 0.00 0.00 35.54 3.06
2909 3935 7.117092 GTGAGTTGAGAAAGGAGATAGTGAAAC 59.883 40.741 0.00 0.00 0.00 2.78
2910 3936 7.015682 AGTGAGTTGAGAAAGGAGATAGTGAAA 59.984 37.037 0.00 0.00 0.00 2.69
2911 3937 6.495181 AGTGAGTTGAGAAAGGAGATAGTGAA 59.505 38.462 0.00 0.00 0.00 3.18
2912 3938 6.013379 AGTGAGTTGAGAAAGGAGATAGTGA 58.987 40.000 0.00 0.00 0.00 3.41
2913 3939 6.279513 AGTGAGTTGAGAAAGGAGATAGTG 57.720 41.667 0.00 0.00 0.00 2.74
2914 3940 9.875708 ATATAGTGAGTTGAGAAAGGAGATAGT 57.124 33.333 0.00 0.00 0.00 2.12
2916 3942 9.303116 GGATATAGTGAGTTGAGAAAGGAGATA 57.697 37.037 0.00 0.00 0.00 1.98
2917 3943 7.234577 GGGATATAGTGAGTTGAGAAAGGAGAT 59.765 40.741 0.00 0.00 0.00 2.75
2918 3944 6.551601 GGGATATAGTGAGTTGAGAAAGGAGA 59.448 42.308 0.00 0.00 0.00 3.71
2919 3945 6.325028 TGGGATATAGTGAGTTGAGAAAGGAG 59.675 42.308 0.00 0.00 0.00 3.69
2920 3946 6.202331 TGGGATATAGTGAGTTGAGAAAGGA 58.798 40.000 0.00 0.00 0.00 3.36
2921 3947 6.485830 TGGGATATAGTGAGTTGAGAAAGG 57.514 41.667 0.00 0.00 0.00 3.11
2922 3948 5.988561 GCTGGGATATAGTGAGTTGAGAAAG 59.011 44.000 0.00 0.00 0.00 2.62
2923 3949 5.451937 CGCTGGGATATAGTGAGTTGAGAAA 60.452 44.000 0.00 0.00 0.00 2.52
2924 3950 4.038042 CGCTGGGATATAGTGAGTTGAGAA 59.962 45.833 0.00 0.00 0.00 2.87
2925 3951 3.570125 CGCTGGGATATAGTGAGTTGAGA 59.430 47.826 0.00 0.00 0.00 3.27
2926 3952 3.305676 CCGCTGGGATATAGTGAGTTGAG 60.306 52.174 0.00 0.00 34.06 3.02
2927 3953 2.628178 CCGCTGGGATATAGTGAGTTGA 59.372 50.000 0.00 0.00 34.06 3.18
2928 3954 2.868044 GCCGCTGGGATATAGTGAGTTG 60.868 54.545 0.00 0.00 34.06 3.16
2929 3955 1.344763 GCCGCTGGGATATAGTGAGTT 59.655 52.381 0.00 0.00 34.06 3.01
2930 3956 0.969894 GCCGCTGGGATATAGTGAGT 59.030 55.000 0.00 0.00 34.06 3.41
2931 3957 0.109086 CGCCGCTGGGATATAGTGAG 60.109 60.000 0.00 0.00 34.06 3.51
2932 3958 1.532604 CCGCCGCTGGGATATAGTGA 61.533 60.000 0.00 0.00 34.06 3.41
2933 3959 1.079819 CCGCCGCTGGGATATAGTG 60.080 63.158 0.00 0.00 34.06 2.74
2934 3960 0.614979 ATCCGCCGCTGGGATATAGT 60.615 55.000 0.00 0.00 42.43 2.12
2935 3961 0.537188 AATCCGCCGCTGGGATATAG 59.463 55.000 0.70 0.00 43.43 1.31
2936 3962 1.855295 TAATCCGCCGCTGGGATATA 58.145 50.000 0.70 0.00 43.43 0.86
2937 3963 0.981183 TTAATCCGCCGCTGGGATAT 59.019 50.000 0.70 0.00 43.43 1.63
2938 3964 0.981183 ATTAATCCGCCGCTGGGATA 59.019 50.000 0.70 0.00 43.43 2.59
2939 3965 0.981183 TATTAATCCGCCGCTGGGAT 59.019 50.000 0.00 0.00 46.14 3.85
2940 3966 0.981183 ATATTAATCCGCCGCTGGGA 59.019 50.000 0.00 0.00 38.10 4.37
2941 3967 2.684001 TATATTAATCCGCCGCTGGG 57.316 50.000 0.00 0.00 0.00 4.45
2942 3968 5.571741 CGTATATATATTAATCCGCCGCTGG 59.428 44.000 0.00 0.00 0.00 4.85
2943 3969 6.147581 ACGTATATATATTAATCCGCCGCTG 58.852 40.000 0.00 0.00 0.00 5.18
2944 3970 6.323203 ACGTATATATATTAATCCGCCGCT 57.677 37.500 0.00 0.00 0.00 5.52
2945 3971 6.638063 TCAACGTATATATATTAATCCGCCGC 59.362 38.462 0.00 0.00 0.00 6.53
2946 3972 8.564648 TTCAACGTATATATATTAATCCGCCG 57.435 34.615 0.00 0.00 0.00 6.46
2955 3981 9.010029 CCCCTTGCTTTTCAACGTATATATATT 57.990 33.333 0.00 0.00 0.00 1.28
2956 3982 8.380099 TCCCCTTGCTTTTCAACGTATATATAT 58.620 33.333 0.00 0.00 0.00 0.86
2957 3983 7.737869 TCCCCTTGCTTTTCAACGTATATATA 58.262 34.615 0.00 0.00 0.00 0.86
2958 3984 6.597562 TCCCCTTGCTTTTCAACGTATATAT 58.402 36.000 0.00 0.00 0.00 0.86
2959 3985 5.991861 TCCCCTTGCTTTTCAACGTATATA 58.008 37.500 0.00 0.00 0.00 0.86
2960 3986 4.850680 TCCCCTTGCTTTTCAACGTATAT 58.149 39.130 0.00 0.00 0.00 0.86
2961 3987 4.289238 TCCCCTTGCTTTTCAACGTATA 57.711 40.909 0.00 0.00 0.00 1.47
2962 3988 3.149005 TCCCCTTGCTTTTCAACGTAT 57.851 42.857 0.00 0.00 0.00 3.06
2963 3989 2.642154 TCCCCTTGCTTTTCAACGTA 57.358 45.000 0.00 0.00 0.00 3.57
2964 3990 1.995376 ATCCCCTTGCTTTTCAACGT 58.005 45.000 0.00 0.00 0.00 3.99
2965 3991 4.513198 TTTATCCCCTTGCTTTTCAACG 57.487 40.909 0.00 0.00 0.00 4.10
2966 3992 6.463360 TCAATTTATCCCCTTGCTTTTCAAC 58.537 36.000 0.00 0.00 0.00 3.18
2967 3993 6.678568 TCAATTTATCCCCTTGCTTTTCAA 57.321 33.333 0.00 0.00 0.00 2.69
2968 3994 6.463360 GTTCAATTTATCCCCTTGCTTTTCA 58.537 36.000 0.00 0.00 0.00 2.69
2969 3995 5.576774 CGTTCAATTTATCCCCTTGCTTTTC 59.423 40.000 0.00 0.00 0.00 2.29
2970 3996 5.245075 TCGTTCAATTTATCCCCTTGCTTTT 59.755 36.000 0.00 0.00 0.00 2.27
2971 3997 4.770010 TCGTTCAATTTATCCCCTTGCTTT 59.230 37.500 0.00 0.00 0.00 3.51
2972 3998 4.340617 TCGTTCAATTTATCCCCTTGCTT 58.659 39.130 0.00 0.00 0.00 3.91
2973 3999 3.963129 TCGTTCAATTTATCCCCTTGCT 58.037 40.909 0.00 0.00 0.00 3.91
2974 4000 4.712122 TTCGTTCAATTTATCCCCTTGC 57.288 40.909 0.00 0.00 0.00 4.01
2975 4001 6.862209 TCATTTCGTTCAATTTATCCCCTTG 58.138 36.000 0.00 0.00 0.00 3.61
2976 4002 7.396055 TCTTCATTTCGTTCAATTTATCCCCTT 59.604 33.333 0.00 0.00 0.00 3.95
2977 4003 6.889722 TCTTCATTTCGTTCAATTTATCCCCT 59.110 34.615 0.00 0.00 0.00 4.79
2978 4004 7.095695 TCTTCATTTCGTTCAATTTATCCCC 57.904 36.000 0.00 0.00 0.00 4.81
2979 4005 6.693113 GCTCTTCATTTCGTTCAATTTATCCC 59.307 38.462 0.00 0.00 0.00 3.85
2980 4006 7.250569 TGCTCTTCATTTCGTTCAATTTATCC 58.749 34.615 0.00 0.00 0.00 2.59
2981 4007 8.673626 TTGCTCTTCATTTCGTTCAATTTATC 57.326 30.769 0.00 0.00 0.00 1.75
2982 4008 9.294030 GATTGCTCTTCATTTCGTTCAATTTAT 57.706 29.630 0.00 0.00 0.00 1.40
2983 4009 7.754924 GGATTGCTCTTCATTTCGTTCAATTTA 59.245 33.333 0.00 0.00 0.00 1.40
2984 4010 6.587608 GGATTGCTCTTCATTTCGTTCAATTT 59.412 34.615 0.00 0.00 0.00 1.82
2985 4011 6.095377 GGATTGCTCTTCATTTCGTTCAATT 58.905 36.000 0.00 0.00 0.00 2.32
2986 4012 5.183713 TGGATTGCTCTTCATTTCGTTCAAT 59.816 36.000 0.00 0.00 0.00 2.57
2987 4013 4.518590 TGGATTGCTCTTCATTTCGTTCAA 59.481 37.500 0.00 0.00 0.00 2.69
2988 4014 4.071423 TGGATTGCTCTTCATTTCGTTCA 58.929 39.130 0.00 0.00 0.00 3.18
2989 4015 4.393062 TCTGGATTGCTCTTCATTTCGTTC 59.607 41.667 0.00 0.00 0.00 3.95
2990 4016 4.326826 TCTGGATTGCTCTTCATTTCGTT 58.673 39.130 0.00 0.00 0.00 3.85
2991 4017 3.942829 TCTGGATTGCTCTTCATTTCGT 58.057 40.909 0.00 0.00 0.00 3.85
2992 4018 4.952262 TTCTGGATTGCTCTTCATTTCG 57.048 40.909 0.00 0.00 0.00 3.46
2993 4019 5.593502 AGGATTCTGGATTGCTCTTCATTTC 59.406 40.000 0.00 0.00 0.00 2.17
2994 4020 5.516984 AGGATTCTGGATTGCTCTTCATTT 58.483 37.500 0.00 0.00 0.00 2.32
2995 4021 5.126699 AGGATTCTGGATTGCTCTTCATT 57.873 39.130 0.00 0.00 0.00 2.57
2996 4022 4.792513 AGGATTCTGGATTGCTCTTCAT 57.207 40.909 0.00 0.00 0.00 2.57
2997 4023 5.901413 ATAGGATTCTGGATTGCTCTTCA 57.099 39.130 0.00 0.00 0.00 3.02
2998 4024 7.067981 ACAAAATAGGATTCTGGATTGCTCTTC 59.932 37.037 0.00 0.00 0.00 2.87
2999 4025 6.894103 ACAAAATAGGATTCTGGATTGCTCTT 59.106 34.615 0.00 0.00 0.00 2.85
3000 4026 6.430007 ACAAAATAGGATTCTGGATTGCTCT 58.570 36.000 0.00 0.00 0.00 4.09
3001 4027 6.705863 ACAAAATAGGATTCTGGATTGCTC 57.294 37.500 0.00 0.00 0.00 4.26
3007 4033 9.778741 GACACATATACAAAATAGGATTCTGGA 57.221 33.333 0.00 0.00 0.00 3.86
3008 4034 9.559732 TGACACATATACAAAATAGGATTCTGG 57.440 33.333 0.00 0.00 0.00 3.86
3051 4077 4.609947 TGAACGTACGTGTGTGTATTCTT 58.390 39.130 23.57 0.32 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.