Multiple sequence alignment - TraesCS6A01G049000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G049000 chr6A 100.000 6428 0 0 1 6428 25016986 25023413 0.000000e+00 11871.0
1 TraesCS6A01G049000 chr6A 90.918 3050 209 31 231 3234 24853030 24856057 0.000000e+00 4036.0
2 TraesCS6A01G049000 chr6A 89.461 2429 214 25 707 3121 24838500 24840900 0.000000e+00 3029.0
3 TraesCS6A01G049000 chr6A 88.706 2187 230 9 913 3092 25631483 25633659 0.000000e+00 2654.0
4 TraesCS6A01G049000 chr6A 88.504 1444 108 22 3309 4713 24856050 24857474 0.000000e+00 1694.0
5 TraesCS6A01G049000 chr6A 86.336 1332 132 20 3421 4712 24841101 24842422 0.000000e+00 1406.0
6 TraesCS6A01G049000 chr6A 76.730 318 46 17 478 774 24852720 24853030 1.120000e-32 152.0
7 TraesCS6A01G049000 chr6A 78.099 242 48 4 32 271 24837035 24837273 1.440000e-31 148.0
8 TraesCS6A01G049000 chr6A 90.741 108 5 5 3214 3316 557970155 557970048 8.690000e-29 139.0
9 TraesCS6A01G049000 chr6A 76.846 298 36 19 5631 5922 24858911 24859181 3.130000e-28 137.0
10 TraesCS6A01G049000 chr6A 81.915 94 9 5 333 425 25631011 25631097 8.940000e-09 73.1
11 TraesCS6A01G049000 chrUn 95.125 3282 134 15 10 3269 94219961 94223238 0.000000e+00 5151.0
12 TraesCS6A01G049000 chrUn 90.660 3062 205 30 231 3241 94178848 94181879 0.000000e+00 3995.0
13 TraesCS6A01G049000 chrUn 89.342 2430 224 26 707 3121 94047291 94049700 0.000000e+00 3020.0
14 TraesCS6A01G049000 chrUn 86.912 2445 279 26 668 3092 94817855 94820278 0.000000e+00 2704.0
15 TraesCS6A01G049000 chrUn 88.536 1448 105 21 3306 4713 94181968 94183394 0.000000e+00 1698.0
16 TraesCS6A01G049000 chrUn 86.160 1315 138 25 3421 4712 94049917 94051210 0.000000e+00 1380.0
17 TraesCS6A01G049000 chrUn 94.216 778 27 5 3304 4080 94223236 94223996 0.000000e+00 1171.0
18 TraesCS6A01G049000 chrUn 94.565 736 26 6 4082 4811 94224158 94224885 0.000000e+00 1125.0
19 TraesCS6A01G049000 chrUn 87.578 805 40 27 4973 5752 94517473 94518242 0.000000e+00 878.0
20 TraesCS6A01G049000 chrUn 84.406 699 81 19 3470 4148 94820454 94821144 0.000000e+00 662.0
21 TraesCS6A01G049000 chrUn 84.588 558 31 18 4973 5511 94243247 94243768 2.680000e-138 503.0
22 TraesCS6A01G049000 chrUn 92.219 347 26 1 5508 5854 94258836 94259181 2.080000e-134 490.0
23 TraesCS6A01G049000 chrUn 80.426 516 87 9 4199 4710 94821260 94821765 1.310000e-101 381.0
24 TraesCS6A01G049000 chrUn 95.745 94 4 0 4889 4982 94224890 94224983 1.120000e-32 152.0
25 TraesCS6A01G049000 chrUn 87.121 132 13 4 478 605 94178530 94178661 5.190000e-31 147.0
26 TraesCS6A01G049000 chrUn 89.189 111 7 1 5631 5741 94184895 94185000 4.040000e-27 134.0
27 TraesCS6A01G049000 chr6B 96.057 2663 89 7 615 3269 43498351 43501005 0.000000e+00 4322.0
28 TraesCS6A01G049000 chr6B 90.121 3057 222 39 231 3234 43347715 43350744 0.000000e+00 3899.0
29 TraesCS6A01G049000 chr6B 89.136 2430 225 28 707 3122 43281514 43283918 0.000000e+00 2988.0
30 TraesCS6A01G049000 chr6B 93.717 1687 69 18 3304 4982 43501003 43502660 0.000000e+00 2494.0
31 TraesCS6A01G049000 chr6B 88.395 1439 107 17 3315 4713 43350743 43352161 0.000000e+00 1677.0
32 TraesCS6A01G049000 chr6B 85.445 1326 144 13 3426 4712 43284266 43285581 0.000000e+00 1334.0
33 TraesCS6A01G049000 chr6B 89.164 969 64 27 4973 5922 43502714 43503660 0.000000e+00 1170.0
34 TraesCS6A01G049000 chr6B 82.226 1159 158 29 3470 4588 44102669 44103819 0.000000e+00 955.0
35 TraesCS6A01G049000 chr6B 86.179 615 54 14 24 629 43497738 43498330 2.530000e-178 636.0
36 TraesCS6A01G049000 chr6B 87.218 399 25 14 5250 5635 43801315 43801700 1.280000e-116 431.0
37 TraesCS6A01G049000 chr6B 84.659 352 38 5 6079 6428 43504391 43504728 2.870000e-88 337.0
38 TraesCS6A01G049000 chr6B 89.252 214 17 3 5714 5922 43802246 43802458 4.940000e-66 263.0
39 TraesCS6A01G049000 chr6B 93.000 100 5 2 3231 3329 431701439 431701341 1.870000e-30 145.0
40 TraesCS6A01G049000 chr6B 84.444 135 21 0 156 290 43280875 43281009 4.040000e-27 134.0
41 TraesCS6A01G049000 chr6B 74.766 321 52 21 478 774 43347400 43347715 4.070000e-22 117.0
42 TraesCS6A01G049000 chr6B 90.805 87 5 2 5120 5203 43801213 43801299 5.270000e-21 113.0
43 TraesCS6A01G049000 chr6B 80.645 93 8 7 333 425 44099609 44099691 5.380000e-06 63.9
44 TraesCS6A01G049000 chr7D 94.792 96 3 2 3231 3325 519264632 519264538 1.440000e-31 148.0
45 TraesCS6A01G049000 chr7D 92.308 104 5 3 3231 3331 426558985 426558882 1.870000e-30 145.0
46 TraesCS6A01G049000 chr7D 92.929 99 5 2 3233 3330 141292172 141292075 6.720000e-30 143.0
47 TraesCS6A01G049000 chr7D 91.262 103 7 2 3233 3334 519264546 519264647 8.690000e-29 139.0
48 TraesCS6A01G049000 chr7D 86.667 105 12 2 3214 3316 218352723 218352619 1.460000e-21 115.0
49 TraesCS6A01G049000 chr7D 84.507 71 9 2 4788 4857 179499062 179498993 1.160000e-07 69.4
50 TraesCS6A01G049000 chr3D 91.429 105 6 3 3227 3330 608805030 608805132 2.420000e-29 141.0
51 TraesCS6A01G049000 chr3D 93.617 94 5 1 3232 3324 411724344 411724437 8.690000e-29 139.0
52 TraesCS6A01G049000 chr1A 85.827 127 12 6 3232 3354 427520582 427520458 5.230000e-26 130.0
53 TraesCS6A01G049000 chr4A 85.593 118 12 5 3213 3326 640807682 640807566 1.130000e-22 119.0
54 TraesCS6A01G049000 chr5A 80.153 131 20 6 3193 3319 462866961 462866833 6.860000e-15 93.5
55 TraesCS6A01G049000 chr1D 88.406 69 3 4 4822 4886 111951093 111951160 1.920000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G049000 chr6A 25016986 25023413 6427 False 11871.000000 11871 100.000000 1 6428 1 chr6A.!!$F1 6427
1 TraesCS6A01G049000 chr6A 24837035 24842422 5387 False 1527.666667 3029 84.632000 32 4712 3 chr6A.!!$F2 4680
2 TraesCS6A01G049000 chr6A 24852720 24859181 6461 False 1504.750000 4036 83.249500 231 5922 4 chr6A.!!$F3 5691
3 TraesCS6A01G049000 chr6A 25631011 25633659 2648 False 1363.550000 2654 85.310500 333 3092 2 chr6A.!!$F4 2759
4 TraesCS6A01G049000 chrUn 94047291 94051210 3919 False 2200.000000 3020 87.751000 707 4712 2 chrUn.!!$F4 4005
5 TraesCS6A01G049000 chrUn 94219961 94224983 5022 False 1899.750000 5151 94.912750 10 4982 4 chrUn.!!$F6 4972
6 TraesCS6A01G049000 chrUn 94178530 94185000 6470 False 1493.500000 3995 88.876500 231 5741 4 chrUn.!!$F5 5510
7 TraesCS6A01G049000 chrUn 94817855 94821765 3910 False 1249.000000 2704 83.914667 668 4710 3 chrUn.!!$F7 4042
8 TraesCS6A01G049000 chrUn 94517473 94518242 769 False 878.000000 878 87.578000 4973 5752 1 chrUn.!!$F3 779
9 TraesCS6A01G049000 chrUn 94243247 94243768 521 False 503.000000 503 84.588000 4973 5511 1 chrUn.!!$F1 538
10 TraesCS6A01G049000 chr6B 43347400 43352161 4761 False 1897.666667 3899 84.427333 231 4713 3 chr6B.!!$F2 4482
11 TraesCS6A01G049000 chr6B 43497738 43504728 6990 False 1791.800000 4322 89.955200 24 6428 5 chr6B.!!$F3 6404
12 TraesCS6A01G049000 chr6B 43280875 43285581 4706 False 1485.333333 2988 86.341667 156 4712 3 chr6B.!!$F1 4556
13 TraesCS6A01G049000 chr6B 44099609 44103819 4210 False 509.450000 955 81.435500 333 4588 2 chr6B.!!$F5 4255
14 TraesCS6A01G049000 chr6B 43801213 43802458 1245 False 269.000000 431 89.091667 5120 5922 3 chr6B.!!$F4 802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 877 0.461135 AAGTTTGGCACCTGCACTTG 59.539 50.000 0.0 0.0 44.36 3.16 F
1162 2293 0.464373 AGTTGCCATCCATACAGCCG 60.464 55.000 0.0 0.0 0.00 5.52 F
2239 3379 4.790718 AGAAAGGTAAACTTCAGTGGGT 57.209 40.909 0.0 0.0 38.85 4.51 F
3757 5207 0.531974 TCCTGACCGTGCAACAACTC 60.532 55.000 0.0 0.0 35.74 3.01 F
4671 6354 0.320421 GCCAGTCAGAAACGGTAGCA 60.320 55.000 0.0 0.0 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2084 3218 2.025605 TCAAAGAAGGCATCCAGAGCAT 60.026 45.455 0.00 0.0 0.00 3.79 R
2278 3418 2.205074 GATGTCATACGCAGGGTGAAG 58.795 52.381 0.00 0.0 0.00 3.02 R
4183 5842 1.069227 GTGAAACAAAGTAGCCGCAGG 60.069 52.381 0.00 0.0 46.48 4.85 R
5180 7039 0.031178 AAGCTTCAAAGTTGCGCTGG 59.969 50.000 9.73 0.0 35.74 4.85 R
5892 8807 0.526524 CAGAACATCGACCGAGAGCC 60.527 60.000 0.00 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.041437 CCACCGATCTCCTACTTCCC 58.959 60.000 0.00 0.00 0.00 3.97
167 176 3.753434 CTCTCTGCGTGCCCGTCT 61.753 66.667 0.00 0.00 36.15 4.18
222 239 3.423154 CGGCTGGCCTCGTTTCAC 61.423 66.667 3.32 0.00 0.00 3.18
228 245 1.801178 CTGGCCTCGTTTCACTTCTTC 59.199 52.381 3.32 0.00 0.00 2.87
229 246 1.157585 GGCCTCGTTTCACTTCTTCC 58.842 55.000 0.00 0.00 0.00 3.46
230 247 1.542547 GGCCTCGTTTCACTTCTTCCA 60.543 52.381 0.00 0.00 0.00 3.53
232 249 2.417719 CCTCGTTTCACTTCTTCCAGG 58.582 52.381 0.00 0.00 0.00 4.45
234 251 3.467803 CTCGTTTCACTTCTTCCAGGTT 58.532 45.455 0.00 0.00 0.00 3.50
250 341 0.514255 GGTTTCAGTCCGTTTACCGC 59.486 55.000 0.00 0.00 34.38 5.68
273 364 2.046313 GTTGCTGAAAATGTGCACGAG 58.954 47.619 13.13 2.19 36.37 4.18
275 366 1.946081 TGCTGAAAATGTGCACGAGAA 59.054 42.857 13.13 0.00 0.00 2.87
282 373 4.346734 AAATGTGCACGAGAAGCATAAG 57.653 40.909 13.13 0.00 44.79 1.73
318 671 3.059393 GCGCTCTTTGTTTACCGTTTACT 60.059 43.478 0.00 0.00 0.00 2.24
425 783 4.252073 GCTGTCTGATGATTGAGACAAGT 58.748 43.478 8.87 0.00 46.09 3.16
447 869 5.102313 GTGCATAATCTAAAGTTTGGCACC 58.898 41.667 14.82 0.00 42.24 5.01
448 870 5.016173 TGCATAATCTAAAGTTTGGCACCT 58.984 37.500 0.00 0.00 0.00 4.00
449 871 5.105797 TGCATAATCTAAAGTTTGGCACCTG 60.106 40.000 0.00 0.00 0.00 4.00
450 872 3.942130 AATCTAAAGTTTGGCACCTGC 57.058 42.857 0.00 0.00 41.14 4.85
451 873 2.356665 TCTAAAGTTTGGCACCTGCA 57.643 45.000 0.00 0.00 44.36 4.41
452 874 1.953686 TCTAAAGTTTGGCACCTGCAC 59.046 47.619 0.00 0.00 44.36 4.57
453 875 1.956477 CTAAAGTTTGGCACCTGCACT 59.044 47.619 0.00 0.00 44.36 4.40
454 876 1.194218 AAAGTTTGGCACCTGCACTT 58.806 45.000 0.00 0.00 44.36 3.16
455 877 0.461135 AAGTTTGGCACCTGCACTTG 59.539 50.000 0.00 0.00 44.36 3.16
456 878 1.592400 GTTTGGCACCTGCACTTGC 60.592 57.895 6.27 6.27 44.36 4.01
502 948 4.437682 TGGAAACTGGAATCTGTTCAGT 57.562 40.909 0.00 0.00 36.01 3.41
515 961 3.774766 TCTGTTCAGTGTAGTATGGCCAT 59.225 43.478 24.45 24.45 0.00 4.40
711 1801 7.670364 TCATCTGTCATTGTTCTCTCAAGTTA 58.330 34.615 0.00 0.00 0.00 2.24
768 1872 3.861276 TCCTGCAATTGCTTCATTCAG 57.139 42.857 29.37 16.71 42.66 3.02
792 1906 5.388225 TTGATTTTTCGCTTCTTTGTTGC 57.612 34.783 0.00 0.00 0.00 4.17
795 1916 3.773860 TTTTCGCTTCTTTGTTGCTGA 57.226 38.095 0.00 0.00 0.00 4.26
850 1973 4.634199 TGTTGGTACTCTTTTAACCGGAG 58.366 43.478 9.46 0.00 35.98 4.63
870 1993 6.924060 CCGGAGTATGTTACTTTGGAGAATAG 59.076 42.308 0.00 0.00 39.59 1.73
1015 2146 6.600388 TGAGGCATAATGGACATAGCTTTTA 58.400 36.000 0.00 0.00 0.00 1.52
1080 2211 3.832490 TCTGCAAGAGTTTAGCTACAGGA 59.168 43.478 0.00 0.00 38.67 3.86
1113 2244 8.616076 GTTGTGAATATTGGGTCTATTCTTCAG 58.384 37.037 0.00 0.00 36.80 3.02
1131 2262 1.599797 GTTTGACTCCACCACCGGG 60.600 63.158 6.32 0.00 41.29 5.73
1162 2293 0.464373 AGTTGCCATCCATACAGCCG 60.464 55.000 0.00 0.00 0.00 5.52
1907 3041 5.748402 TGATGCTAATTCATCAGTTCCTGT 58.252 37.500 5.87 0.00 45.50 4.00
2035 3169 8.951787 AAAGTACAACTACAGTGATGTTTGTA 57.048 30.769 0.00 2.53 0.00 2.41
2239 3379 4.790718 AGAAAGGTAAACTTCAGTGGGT 57.209 40.909 0.00 0.00 38.85 4.51
2386 3526 2.092429 ACTGTCTCTCCAGAGGCTCTAG 60.092 54.545 18.26 10.61 46.41 2.43
2729 3870 5.310451 TGTAAGTACGGAATGCCTCTTTTT 58.690 37.500 0.00 0.00 0.00 1.94
2997 4167 3.314307 TTGTGGGTGTGGTTATTTGGA 57.686 42.857 0.00 0.00 0.00 3.53
3092 4262 1.266989 GCTGACCTGCACCTTTTGTAC 59.733 52.381 0.00 0.00 0.00 2.90
3243 4539 1.473434 CCAATGAACTACTCCCTCCGC 60.473 57.143 0.00 0.00 0.00 5.54
3266 4562 5.778862 CCCCATAATATAAGGGCGTTTTTG 58.221 41.667 0.00 0.00 41.42 2.44
3267 4563 5.536916 CCCCATAATATAAGGGCGTTTTTGA 59.463 40.000 0.00 0.00 41.42 2.69
3268 4564 6.443792 CCCATAATATAAGGGCGTTTTTGAC 58.556 40.000 0.00 0.00 35.44 3.18
3269 4565 6.039941 CCCATAATATAAGGGCGTTTTTGACA 59.960 38.462 0.00 0.00 35.44 3.58
3270 4566 6.915843 CCATAATATAAGGGCGTTTTTGACAC 59.084 38.462 0.00 0.00 0.00 3.67
3272 4568 8.832521 CATAATATAAGGGCGTTTTTGACACTA 58.167 33.333 0.00 0.00 0.00 2.74
3273 4569 6.673154 ATATAAGGGCGTTTTTGACACTAC 57.327 37.500 0.00 0.00 0.00 2.73
3274 4570 2.335316 AGGGCGTTTTTGACACTACA 57.665 45.000 0.00 0.00 0.00 2.74
3275 4571 1.944709 AGGGCGTTTTTGACACTACAC 59.055 47.619 0.00 0.00 0.00 2.90
3276 4572 1.944709 GGGCGTTTTTGACACTACACT 59.055 47.619 0.00 0.00 0.00 3.55
3278 4574 3.185797 GGGCGTTTTTGACACTACACTAG 59.814 47.826 0.00 0.00 0.00 2.57
3279 4575 3.805971 GGCGTTTTTGACACTACACTAGT 59.194 43.478 0.00 0.00 40.28 2.57
3293 4589 3.793559 ACACTAGTGTCAAAACGCTCTT 58.206 40.909 22.95 0.00 42.59 2.85
3296 4592 6.684686 ACACTAGTGTCAAAACGCTCTTATA 58.315 36.000 22.95 0.00 42.59 0.98
3299 4595 9.297586 CACTAGTGTCAAAACGCTCTTATATTA 57.702 33.333 15.06 0.00 42.59 0.98
3302 4598 8.142994 AGTGTCAAAACGCTCTTATATTATGG 57.857 34.615 0.00 0.00 42.59 2.74
3303 4599 7.226720 AGTGTCAAAACGCTCTTATATTATGGG 59.773 37.037 0.00 0.00 42.59 4.00
3304 4600 7.225931 GTGTCAAAACGCTCTTATATTATGGGA 59.774 37.037 0.00 0.00 32.98 4.37
3355 4675 5.928264 TGTGAGACATATATACATGCACAGC 59.072 40.000 0.00 0.00 29.10 4.40
3415 4819 8.296713 TGCTCTATTTTTCCTGTTTTCACATAC 58.703 33.333 0.00 0.00 30.39 2.39
3416 4820 8.515414 GCTCTATTTTTCCTGTTTTCACATACT 58.485 33.333 0.00 0.00 30.39 2.12
3537 4961 3.527533 ACTTTGTTCTTCGCACACAGTA 58.472 40.909 0.00 0.00 34.18 2.74
3564 4988 5.568620 AACCAACCTTCTCTCTTATGTGT 57.431 39.130 0.00 0.00 0.00 3.72
3565 4989 5.568620 ACCAACCTTCTCTCTTATGTGTT 57.431 39.130 0.00 0.00 0.00 3.32
3566 4990 5.941788 ACCAACCTTCTCTCTTATGTGTTT 58.058 37.500 0.00 0.00 0.00 2.83
3567 4991 6.365520 ACCAACCTTCTCTCTTATGTGTTTT 58.634 36.000 0.00 0.00 0.00 2.43
3757 5207 0.531974 TCCTGACCGTGCAACAACTC 60.532 55.000 0.00 0.00 35.74 3.01
3989 5439 6.239289 CCCCTATGTTGAACTGTTTTTGTCAT 60.239 38.462 0.00 0.00 0.00 3.06
4487 6170 8.413309 ACTTTGGTATCATGCTATGCAAATAT 57.587 30.769 0.00 0.00 43.62 1.28
4503 6186 3.845781 AATATCTGAGGCATGAACCGT 57.154 42.857 0.00 0.00 33.69 4.83
4595 6278 2.932194 AGCCTGCCTGGAAGCTCA 60.932 61.111 0.00 0.00 38.35 4.26
4621 6304 4.393155 AACGCCGATGAGCAGCCA 62.393 61.111 0.00 0.00 0.00 4.75
4667 6350 1.071471 CAGGCCAGTCAGAAACGGT 59.929 57.895 5.01 0.00 0.00 4.83
4671 6354 0.320421 GCCAGTCAGAAACGGTAGCA 60.320 55.000 0.00 0.00 0.00 3.49
4691 6374 7.013274 GGTAGCATTATTGACATGGAAAGCTAA 59.987 37.037 0.00 0.00 33.31 3.09
4759 6502 2.184579 GTAGTCGGACAGCAGGGC 59.815 66.667 11.27 0.00 0.00 5.19
4775 6518 2.232452 CAGGGCTGTATAGGAGGATTCG 59.768 54.545 0.00 0.00 0.00 3.34
4807 6550 3.889520 AAGTACTCCCTCCGATTCAAC 57.110 47.619 0.00 0.00 0.00 3.18
4814 6557 6.555463 ACTCCCTCCGATTCAACTTAATTA 57.445 37.500 0.00 0.00 0.00 1.40
4817 6560 6.954232 TCCCTCCGATTCAACTTAATTAACT 58.046 36.000 0.00 0.00 0.00 2.24
4822 6565 9.543018 CTCCGATTCAACTTAATTAACTTTGAC 57.457 33.333 13.53 6.34 0.00 3.18
4823 6566 9.280174 TCCGATTCAACTTAATTAACTTTGACT 57.720 29.630 13.53 10.26 0.00 3.41
4824 6567 9.893305 CCGATTCAACTTAATTAACTTTGACTT 57.107 29.630 13.53 7.53 0.00 3.01
4864 6608 1.997606 GTTGTACTAAGTCGGCGCAAT 59.002 47.619 10.83 0.00 0.00 3.56
4871 6615 5.305139 ACTAAGTCGGCGCAATTAATTTT 57.695 34.783 10.83 0.00 0.00 1.82
4876 6620 4.096382 AGTCGGCGCAATTAATTTTGATCT 59.904 37.500 10.83 0.00 0.00 2.75
4896 6640 8.840200 TGATCTGAGGGAGTACTAAAGTTTAT 57.160 34.615 0.00 0.00 0.00 1.40
4997 6808 2.285083 GCATGTGTTTGATAGGGCGTA 58.715 47.619 0.00 0.00 0.00 4.42
4998 6809 2.287915 GCATGTGTTTGATAGGGCGTAG 59.712 50.000 0.00 0.00 0.00 3.51
4999 6810 3.531538 CATGTGTTTGATAGGGCGTAGT 58.468 45.455 0.00 0.00 0.00 2.73
5061 6911 0.963856 AGTCTATCGACCGTGTGGCA 60.964 55.000 0.00 0.00 41.16 4.92
5095 6945 5.371115 TTGTAGCACTAAACTTTGATGCC 57.629 39.130 7.75 0.00 36.96 4.40
5132 6983 1.549203 AGATGGAGCCGCACAAAAAT 58.451 45.000 0.00 0.00 0.00 1.82
5175 7034 5.003804 ACACACTCTGTTTTGTCTCAGTTT 58.996 37.500 0.00 0.00 33.89 2.66
5176 7035 5.473504 ACACACTCTGTTTTGTCTCAGTTTT 59.526 36.000 0.00 0.00 33.89 2.43
5177 7036 6.653320 ACACACTCTGTTTTGTCTCAGTTTTA 59.347 34.615 0.00 0.00 33.89 1.52
5178 7037 7.148407 ACACACTCTGTTTTGTCTCAGTTTTAG 60.148 37.037 0.00 0.00 33.89 1.85
5179 7038 6.879458 ACACTCTGTTTTGTCTCAGTTTTAGT 59.121 34.615 0.00 0.00 33.89 2.24
5180 7039 7.064728 ACACTCTGTTTTGTCTCAGTTTTAGTC 59.935 37.037 0.00 0.00 33.89 2.59
5181 7040 6.539103 ACTCTGTTTTGTCTCAGTTTTAGTCC 59.461 38.462 0.00 0.00 33.89 3.85
5182 7041 6.411376 TCTGTTTTGTCTCAGTTTTAGTCCA 58.589 36.000 0.00 0.00 33.89 4.02
5183 7042 6.538742 TCTGTTTTGTCTCAGTTTTAGTCCAG 59.461 38.462 0.00 0.00 33.89 3.86
5184 7043 5.065988 TGTTTTGTCTCAGTTTTAGTCCAGC 59.934 40.000 0.00 0.00 0.00 4.85
5185 7044 3.026630 TGTCTCAGTTTTAGTCCAGCG 57.973 47.619 0.00 0.00 0.00 5.18
5186 7045 1.727335 GTCTCAGTTTTAGTCCAGCGC 59.273 52.381 0.00 0.00 0.00 5.92
5187 7046 1.343142 TCTCAGTTTTAGTCCAGCGCA 59.657 47.619 11.47 0.00 0.00 6.09
5188 7047 2.143122 CTCAGTTTTAGTCCAGCGCAA 58.857 47.619 11.47 0.00 0.00 4.85
5189 7048 1.871039 TCAGTTTTAGTCCAGCGCAAC 59.129 47.619 11.47 4.62 0.00 4.17
5190 7049 1.873591 CAGTTTTAGTCCAGCGCAACT 59.126 47.619 11.47 12.76 0.00 3.16
5191 7050 2.290641 CAGTTTTAGTCCAGCGCAACTT 59.709 45.455 11.47 0.00 0.00 2.66
5192 7051 2.949644 AGTTTTAGTCCAGCGCAACTTT 59.050 40.909 11.47 0.00 0.00 2.66
5193 7052 3.042887 GTTTTAGTCCAGCGCAACTTTG 58.957 45.455 11.47 0.00 0.00 2.77
5194 7053 2.248280 TTAGTCCAGCGCAACTTTGA 57.752 45.000 11.47 0.00 0.00 2.69
5195 7054 2.248280 TAGTCCAGCGCAACTTTGAA 57.752 45.000 11.47 0.00 0.00 2.69
5196 7055 0.947244 AGTCCAGCGCAACTTTGAAG 59.053 50.000 11.47 0.00 0.00 3.02
5197 7056 0.661483 GTCCAGCGCAACTTTGAAGC 60.661 55.000 11.47 0.00 34.89 3.86
5427 7445 4.211920 AGCTAGCTACTTGTCTCCCTTAG 58.788 47.826 17.69 0.00 0.00 2.18
5489 7509 5.957842 AAATTCTTGCAGGTTCGTAATGA 57.042 34.783 0.00 0.00 0.00 2.57
5526 7559 5.125900 TCTGGCATTCACACCAATCATAAAG 59.874 40.000 0.00 0.00 34.96 1.85
5654 8297 6.808008 ATTTGTCATTCTGTTCAGTACCTG 57.192 37.500 0.00 0.00 0.00 4.00
5655 8298 4.271696 TGTCATTCTGTTCAGTACCTGG 57.728 45.455 0.00 0.00 31.51 4.45
5656 8299 3.646162 TGTCATTCTGTTCAGTACCTGGT 59.354 43.478 4.05 4.05 31.51 4.00
5657 8300 4.102524 TGTCATTCTGTTCAGTACCTGGTT 59.897 41.667 3.84 0.00 31.51 3.67
5658 8301 5.063880 GTCATTCTGTTCAGTACCTGGTTT 58.936 41.667 3.84 0.00 31.51 3.27
5756 8666 1.889891 CGCTTGTGTTTTGACGTGTT 58.110 45.000 0.00 0.00 0.00 3.32
5762 8672 1.942223 GTTTTGACGTGTTGCGGGC 60.942 57.895 0.00 0.00 46.52 6.13
5783 8693 2.936498 CAACCAAGAGTCGTTCAACAGT 59.064 45.455 0.00 0.00 0.00 3.55
5785 8699 2.093658 ACCAAGAGTCGTTCAACAGTGT 60.094 45.455 0.00 0.00 0.00 3.55
5795 8709 4.258206 AACAGTGTGTTGCTGGGG 57.742 55.556 0.00 0.00 39.45 4.96
5827 8742 2.666994 GTCTGACAGTAAAAGGTAGCGC 59.333 50.000 0.00 0.00 0.00 5.92
5849 8764 3.790691 TGAACTGGTTTCAAGCCGA 57.209 47.368 0.00 0.00 41.51 5.54
5892 8807 6.915544 ACTAATATATCATGGCATCTTGCG 57.084 37.500 0.00 0.00 46.21 4.85
5918 8833 3.275999 TCGGTCGATGTTCTGTCATCTA 58.724 45.455 0.00 1.98 41.17 1.98
5922 8837 5.218885 GGTCGATGTTCTGTCATCTATGAG 58.781 45.833 0.00 0.00 41.17 2.90
5923 8838 5.218885 GTCGATGTTCTGTCATCTATGAGG 58.781 45.833 0.00 0.00 41.17 3.86
5925 8840 5.240403 TCGATGTTCTGTCATCTATGAGGAG 59.760 44.000 0.00 0.00 41.17 3.69
5926 8841 5.240403 CGATGTTCTGTCATCTATGAGGAGA 59.760 44.000 0.00 0.00 41.17 3.71
5927 8842 6.568271 CGATGTTCTGTCATCTATGAGGAGAG 60.568 46.154 0.89 0.89 41.17 3.20
5928 8843 5.760131 TGTTCTGTCATCTATGAGGAGAGA 58.240 41.667 5.25 5.25 40.09 3.10
5929 8844 5.827267 TGTTCTGTCATCTATGAGGAGAGAG 59.173 44.000 8.58 0.00 42.03 3.20
5930 8845 5.645056 TCTGTCATCTATGAGGAGAGAGT 57.355 43.478 5.25 0.00 37.72 3.24
5933 8848 6.545666 TCTGTCATCTATGAGGAGAGAGTTTC 59.454 42.308 5.25 0.00 37.72 2.78
5934 8849 5.596361 TGTCATCTATGAGGAGAGAGTTTCC 59.404 44.000 0.00 0.00 37.51 3.13
5935 8850 5.596361 GTCATCTATGAGGAGAGAGTTTCCA 59.404 44.000 0.00 0.00 37.51 3.53
5936 8851 6.267471 GTCATCTATGAGGAGAGAGTTTCCAT 59.733 42.308 0.00 0.00 37.51 3.41
5937 8852 6.843333 TCATCTATGAGGAGAGAGTTTCCATT 59.157 38.462 0.00 0.00 37.18 3.16
5938 8853 7.346698 TCATCTATGAGGAGAGAGTTTCCATTT 59.653 37.037 0.00 0.00 37.18 2.32
5939 8854 8.646004 CATCTATGAGGAGAGAGTTTCCATTTA 58.354 37.037 0.00 0.00 37.18 1.40
5940 8855 8.609617 TCTATGAGGAGAGAGTTTCCATTTAA 57.390 34.615 0.00 0.00 37.18 1.52
5942 8857 9.487790 CTATGAGGAGAGAGTTTCCATTTAATC 57.512 37.037 0.00 0.00 37.18 1.75
5944 8859 8.609617 TGAGGAGAGAGTTTCCATTTAATCTA 57.390 34.615 0.00 0.00 37.18 1.98
5945 8860 8.700051 TGAGGAGAGAGTTTCCATTTAATCTAG 58.300 37.037 0.00 0.00 37.18 2.43
5948 8863 9.103861 GGAGAGAGTTTCCATTTAATCTAGTTG 57.896 37.037 0.00 0.00 34.74 3.16
5950 8865 8.325046 AGAGAGTTTCCATTTAATCTAGTTGCT 58.675 33.333 0.00 0.00 0.00 3.91
5951 8866 9.601217 GAGAGTTTCCATTTAATCTAGTTGCTA 57.399 33.333 0.00 0.00 0.00 3.49
5952 8867 9.959721 AGAGTTTCCATTTAATCTAGTTGCTAA 57.040 29.630 0.00 0.00 0.00 3.09
5959 8874 9.241317 CCATTTAATCTAGTTGCTAATGCTTTG 57.759 33.333 0.00 0.00 40.48 2.77
5965 8880 9.613428 AATCTAGTTGCTAATGCTTTGTATACA 57.387 29.630 0.08 0.08 40.48 2.29
5966 8881 9.613428 ATCTAGTTGCTAATGCTTTGTATACAA 57.387 29.630 14.35 14.35 40.48 2.41
5967 8882 9.443323 TCTAGTTGCTAATGCTTTGTATACAAA 57.557 29.630 25.48 25.48 42.81 2.83
5970 8885 9.927668 AGTTGCTAATGCTTTGTATACAAAATT 57.072 25.926 26.60 24.32 44.24 1.82
5996 8911 8.978874 ATAGATGCCTACACAATACAAAATCA 57.021 30.769 0.00 0.00 0.00 2.57
5997 8912 7.701539 AGATGCCTACACAATACAAAATCAA 57.298 32.000 0.00 0.00 0.00 2.57
5998 8913 8.121305 AGATGCCTACACAATACAAAATCAAA 57.879 30.769 0.00 0.00 0.00 2.69
5999 8914 8.584157 AGATGCCTACACAATACAAAATCAAAA 58.416 29.630 0.00 0.00 0.00 2.44
6000 8915 8.761575 ATGCCTACACAATACAAAATCAAAAG 57.238 30.769 0.00 0.00 0.00 2.27
6002 8917 8.200792 TGCCTACACAATACAAAATCAAAAGTT 58.799 29.630 0.00 0.00 0.00 2.66
6003 8918 9.685828 GCCTACACAATACAAAATCAAAAGTTA 57.314 29.630 0.00 0.00 0.00 2.24
6037 8952 9.918630 AGTCAAACTGGAAAATTCATAGATTTG 57.081 29.630 0.00 0.00 30.06 2.32
6038 8953 8.650714 GTCAAACTGGAAAATTCATAGATTTGC 58.349 33.333 0.00 0.00 30.06 3.68
6039 8954 8.366401 TCAAACTGGAAAATTCATAGATTTGCA 58.634 29.630 0.00 0.00 34.06 4.08
6042 8957 7.104043 CTGGAAAATTCATAGATTTGCAGGA 57.896 36.000 10.06 0.00 44.07 3.86
6043 8958 7.479352 TGGAAAATTCATAGATTTGCAGGAA 57.521 32.000 0.00 0.00 31.93 3.36
6044 8959 7.322664 TGGAAAATTCATAGATTTGCAGGAAC 58.677 34.615 0.00 0.00 31.93 3.62
6046 8961 7.983484 GGAAAATTCATAGATTTGCAGGAACAT 59.017 33.333 0.00 0.00 30.06 2.71
6047 8962 8.937634 AAAATTCATAGATTTGCAGGAACATC 57.062 30.769 0.00 0.00 30.06 3.06
6048 8963 7.893124 AATTCATAGATTTGCAGGAACATCT 57.107 32.000 0.00 5.25 0.00 2.90
6051 8966 6.888105 TCATAGATTTGCAGGAACATCTGTA 58.112 36.000 8.58 0.00 37.12 2.74
6052 8967 6.763135 TCATAGATTTGCAGGAACATCTGTAC 59.237 38.462 8.58 0.00 37.12 2.90
6054 8969 5.503927 AGATTTGCAGGAACATCTGTACAT 58.496 37.500 0.00 0.00 37.12 2.29
6055 8970 6.653020 AGATTTGCAGGAACATCTGTACATA 58.347 36.000 0.00 0.00 37.12 2.29
6056 8971 7.112122 AGATTTGCAGGAACATCTGTACATAA 58.888 34.615 0.00 0.00 37.12 1.90
6057 8972 7.611467 AGATTTGCAGGAACATCTGTACATAAA 59.389 33.333 0.00 0.00 37.12 1.40
6059 8974 4.635765 TGCAGGAACATCTGTACATAAAGC 59.364 41.667 0.00 0.00 37.12 3.51
6061 8976 5.431765 CAGGAACATCTGTACATAAAGCCT 58.568 41.667 0.00 0.00 0.00 4.58
6062 8977 5.882557 CAGGAACATCTGTACATAAAGCCTT 59.117 40.000 0.00 0.00 0.00 4.35
6063 8978 6.375455 CAGGAACATCTGTACATAAAGCCTTT 59.625 38.462 0.00 0.00 0.00 3.11
6065 8980 7.121315 AGGAACATCTGTACATAAAGCCTTTTC 59.879 37.037 0.00 0.00 0.00 2.29
6066 8981 6.759497 ACATCTGTACATAAAGCCTTTTCC 57.241 37.500 0.00 0.00 0.00 3.13
6067 8982 6.245408 ACATCTGTACATAAAGCCTTTTCCA 58.755 36.000 0.00 0.00 0.00 3.53
6068 8983 6.891908 ACATCTGTACATAAAGCCTTTTCCAT 59.108 34.615 0.00 0.00 0.00 3.41
6070 8985 6.480763 TCTGTACATAAAGCCTTTTCCATCA 58.519 36.000 0.00 0.00 0.00 3.07
6072 8987 7.450014 TCTGTACATAAAGCCTTTTCCATCAAA 59.550 33.333 0.00 0.00 0.00 2.69
6073 8988 7.601856 TGTACATAAAGCCTTTTCCATCAAAG 58.398 34.615 0.00 0.00 34.06 2.77
6076 8991 8.366359 ACATAAAGCCTTTTCCATCAAAGTAT 57.634 30.769 0.00 0.00 32.61 2.12
6077 8992 8.253113 ACATAAAGCCTTTTCCATCAAAGTATG 58.747 33.333 0.00 0.00 32.61 2.39
6080 9569 6.759497 AGCCTTTTCCATCAAAGTATGTAC 57.241 37.500 0.00 0.00 32.61 2.90
6090 9579 9.325198 TCCATCAAAGTATGTACATACATTGTC 57.675 33.333 37.63 20.42 45.61 3.18
6118 9608 9.886132 ATTTTAACATAAGAATGTAGGACTCGT 57.114 29.630 0.00 0.00 45.79 4.18
6122 9612 6.931838 ACATAAGAATGTAGGACTCGTTCAA 58.068 36.000 0.00 0.00 44.66 2.69
6125 9615 6.541111 AAGAATGTAGGACTCGTTCAAAAC 57.459 37.500 0.00 0.00 34.44 2.43
6185 9675 5.707066 AAATAAGGGAGCACATCTTCTCT 57.293 39.130 0.00 0.00 0.00 3.10
6186 9676 4.686191 ATAAGGGAGCACATCTTCTCTG 57.314 45.455 0.00 0.00 0.00 3.35
6188 9678 0.908198 GGGAGCACATCTTCTCTGGT 59.092 55.000 0.00 0.00 0.00 4.00
6200 9691 5.551305 TCTTCTCTGGTTTGATCACTGAA 57.449 39.130 0.00 0.00 0.00 3.02
6207 9698 4.971939 TGGTTTGATCACTGAAGTCATCA 58.028 39.130 0.00 0.00 33.69 3.07
6216 9707 4.694037 TCACTGAAGTCATCAATTGAGCAG 59.306 41.667 14.54 14.40 37.67 4.24
6269 9760 4.105697 ACTTAGGGAGAACAATTTGGGTGA 59.894 41.667 0.78 0.00 0.00 4.02
6271 9762 4.946160 AGGGAGAACAATTTGGGTGATA 57.054 40.909 0.78 0.00 0.00 2.15
6272 9763 4.600062 AGGGAGAACAATTTGGGTGATAC 58.400 43.478 0.78 0.00 0.00 2.24
6281 9772 9.103861 GAACAATTTGGGTGATACTTTTTCAAA 57.896 29.630 0.78 0.00 0.00 2.69
6282 9773 8.661352 ACAATTTGGGTGATACTTTTTCAAAG 57.339 30.769 0.78 0.00 0.00 2.77
6283 9774 8.264347 ACAATTTGGGTGATACTTTTTCAAAGT 58.736 29.630 7.06 7.06 0.00 2.66
6365 9856 9.678260 ATCTCATCCTTCATAATAAAGTATGGC 57.322 33.333 0.00 0.00 33.11 4.40
6366 9857 8.103305 TCTCATCCTTCATAATAAAGTATGGCC 58.897 37.037 0.00 0.00 33.11 5.36
6367 9858 7.754624 TCATCCTTCATAATAAAGTATGGCCA 58.245 34.615 8.56 8.56 33.11 5.36
6368 9859 8.224025 TCATCCTTCATAATAAAGTATGGCCAA 58.776 33.333 10.96 0.00 33.11 4.52
6372 9863 8.474025 CCTTCATAATAAAGTATGGCCAAACAA 58.526 33.333 10.96 0.00 33.11 2.83
6387 9878 3.314080 CCAAACAAACAGAGAAACCGCTA 59.686 43.478 0.00 0.00 0.00 4.26
6404 9895 3.127030 CCGCTAGTTTCTTTCATGTTCCC 59.873 47.826 0.00 0.00 0.00 3.97
6405 9896 3.127030 CGCTAGTTTCTTTCATGTTCCCC 59.873 47.826 0.00 0.00 0.00 4.81
6410 9901 3.874383 TTCTTTCATGTTCCCCAGACA 57.126 42.857 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.158904 TAGGAGATCGGTGGGAGGAT 58.841 55.000 0.00 0.00 0.00 3.24
6 7 0.186386 AGTAGGAGATCGGTGGGAGG 59.814 60.000 0.00 0.00 0.00 4.30
7 8 1.957877 GAAGTAGGAGATCGGTGGGAG 59.042 57.143 0.00 0.00 0.00 4.30
143 148 3.051210 CACGCAGAGAGTGGACCA 58.949 61.111 0.00 0.00 36.06 4.02
148 157 4.363990 ACGGGCACGCAGAGAGTG 62.364 66.667 9.12 0.00 46.04 3.51
167 176 1.811965 CAATCCATCGAACACCTTGCA 59.188 47.619 0.00 0.00 0.00 4.08
212 221 2.224305 ACCTGGAAGAAGTGAAACGAGG 60.224 50.000 0.00 0.00 38.17 4.63
222 239 2.224305 ACGGACTGAAACCTGGAAGAAG 60.224 50.000 0.00 0.00 34.07 2.85
228 245 2.148768 GGTAAACGGACTGAAACCTGG 58.851 52.381 0.00 0.00 0.00 4.45
229 246 1.796459 CGGTAAACGGACTGAAACCTG 59.204 52.381 0.00 0.00 39.42 4.00
230 247 1.875157 GCGGTAAACGGACTGAAACCT 60.875 52.381 0.00 0.00 44.51 3.50
232 249 0.514255 GGCGGTAAACGGACTGAAAC 59.486 55.000 0.00 0.00 44.51 2.78
234 251 1.373246 CGGCGGTAAACGGACTGAA 60.373 57.895 0.00 0.00 44.51 3.02
250 341 0.031857 TGCACATTTTCAGCAACCGG 59.968 50.000 0.00 0.00 34.97 5.28
282 373 0.801251 GAGCGCATATCCCAGCATTC 59.199 55.000 11.47 0.00 0.00 2.67
318 671 2.762887 TCCTGCAACCAAACAAATGACA 59.237 40.909 0.00 0.00 0.00 3.58
390 744 3.497118 TCAGACAGCAAACAAACAAACG 58.503 40.909 0.00 0.00 0.00 3.60
425 783 5.016173 AGGTGCCAAACTTTAGATTATGCA 58.984 37.500 0.00 0.00 0.00 3.96
449 871 2.282040 AGGAGCAGGTGCAAGTGC 60.282 61.111 12.61 12.61 45.16 4.40
450 872 2.623915 GCAGGAGCAGGTGCAAGTG 61.624 63.158 4.48 0.00 45.16 3.16
451 873 2.282040 GCAGGAGCAGGTGCAAGT 60.282 61.111 4.48 0.00 45.16 3.16
537 984 5.006386 AGTCAAGAAGCAATTGGTCCTTAG 58.994 41.667 8.89 4.60 0.00 2.18
642 1725 4.111375 ACACACCGAATCTAGTAAGCAG 57.889 45.455 0.00 0.00 0.00 4.24
711 1801 4.157840 GGGTTGAATATCGCAAGGAAAAGT 59.842 41.667 0.00 0.00 38.47 2.66
768 1872 6.067039 GCAACAAAGAAGCGAAAAATCAATC 58.933 36.000 0.00 0.00 0.00 2.67
792 1906 4.298332 CCCAAACGTTGAAAGGAAATCAG 58.702 43.478 0.00 0.00 0.00 2.90
795 1916 2.698274 AGCCCAAACGTTGAAAGGAAAT 59.302 40.909 0.00 0.00 0.00 2.17
844 1967 4.091549 TCTCCAAAGTAACATACTCCGGT 58.908 43.478 0.00 0.00 38.26 5.28
845 1968 4.730949 TCTCCAAAGTAACATACTCCGG 57.269 45.455 0.00 0.00 38.26 5.14
1005 2136 8.246180 AGAACCAACAACATGATAAAAGCTATG 58.754 33.333 0.00 0.00 0.00 2.23
1015 2146 5.278660 GCAGAGAAAGAACCAACAACATGAT 60.279 40.000 0.00 0.00 0.00 2.45
1080 2211 3.333680 ACCCAATATTCACAACAGGAGGT 59.666 43.478 0.00 0.00 0.00 3.85
1113 2244 1.599797 CCCGGTGGTGGAGTCAAAC 60.600 63.158 0.00 0.00 0.00 2.93
1131 2262 4.645921 GCAACTGCCGCAACACCC 62.646 66.667 0.00 0.00 34.31 4.61
1162 2293 6.166984 TGGATCAGAGTTGATATCTTCCAC 57.833 41.667 3.98 0.00 44.01 4.02
1314 2446 4.821805 CCACAACTCCACAACAGAAGTAAT 59.178 41.667 0.00 0.00 0.00 1.89
1907 3041 3.308401 TGCAGGCCAGATATAGTCTCAA 58.692 45.455 5.01 0.00 34.00 3.02
2084 3218 2.025605 TCAAAGAAGGCATCCAGAGCAT 60.026 45.455 0.00 0.00 0.00 3.79
2239 3379 2.423185 CGAATTGCACTTGCCCAGATAA 59.577 45.455 0.00 0.00 41.18 1.75
2278 3418 2.205074 GATGTCATACGCAGGGTGAAG 58.795 52.381 0.00 0.00 0.00 3.02
2386 3526 7.505258 AGAGAAGTATTAGGAGGCTTTGAATC 58.495 38.462 0.00 0.00 0.00 2.52
2729 3870 4.905429 TGATGAAATGGTTCGAGGAAGAA 58.095 39.130 0.00 0.00 36.46 2.52
2730 3871 4.551702 TGATGAAATGGTTCGAGGAAGA 57.448 40.909 0.00 0.00 36.46 2.87
2738 3879 7.175467 TCAGCATGGTATATGATGAAATGGTTC 59.825 37.037 5.48 0.00 40.86 3.62
2997 4167 5.007039 CGTCATTGATCCGATGTTCAAGAAT 59.993 40.000 6.19 0.00 34.56 2.40
3092 4262 6.516718 ACAGGAATGATATACAAGAAGACGG 58.483 40.000 0.00 0.00 0.00 4.79
3171 4352 1.195115 CTGGCCACTGCTCTAAGGTA 58.805 55.000 0.00 0.00 37.74 3.08
3243 4539 5.536916 TCAAAAACGCCCTTATATTATGGGG 59.463 40.000 10.45 10.45 42.04 4.96
3269 4565 4.037684 AGAGCGTTTTGACACTAGTGTAGT 59.962 41.667 27.98 6.32 45.05 2.73
3270 4566 4.547532 AGAGCGTTTTGACACTAGTGTAG 58.452 43.478 27.98 15.31 45.05 2.74
3273 4569 7.757097 ATATAAGAGCGTTTTGACACTAGTG 57.243 36.000 21.44 21.44 0.00 2.74
3276 4572 9.256477 CCATAATATAAGAGCGTTTTGACACTA 57.744 33.333 0.00 0.00 0.00 2.74
3278 4574 7.225931 TCCCATAATATAAGAGCGTTTTGACAC 59.774 37.037 0.00 0.00 0.00 3.67
3279 4575 7.225931 GTCCCATAATATAAGAGCGTTTTGACA 59.774 37.037 0.00 0.00 0.00 3.58
3282 4578 6.347402 CCGTCCCATAATATAAGAGCGTTTTG 60.347 42.308 0.00 0.00 0.00 2.44
3283 4579 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3287 4583 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3288 4584 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3289 4585 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3290 4586 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3293 4589 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3296 4592 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
3299 4595 3.077695 AGATAATACTCCCTCCGTCCCAT 59.922 47.826 0.00 0.00 0.00 4.00
3300 4596 2.449730 AGATAATACTCCCTCCGTCCCA 59.550 50.000 0.00 0.00 0.00 4.37
3302 4598 6.854091 ATTAAGATAATACTCCCTCCGTCC 57.146 41.667 0.00 0.00 0.00 4.79
3304 4600 9.771140 AGATTATTAAGATAATACTCCCTCCGT 57.229 33.333 4.71 0.00 38.31 4.69
3415 4819 5.065731 GGCAAATACATGTGGAGAAGAGAAG 59.934 44.000 9.11 0.00 0.00 2.85
3416 4820 4.943705 GGCAAATACATGTGGAGAAGAGAA 59.056 41.667 9.11 0.00 0.00 2.87
3417 4821 4.019411 TGGCAAATACATGTGGAGAAGAGA 60.019 41.667 9.11 0.00 0.00 3.10
3418 4822 4.264253 TGGCAAATACATGTGGAGAAGAG 58.736 43.478 9.11 0.00 0.00 2.85
3419 4823 4.299586 TGGCAAATACATGTGGAGAAGA 57.700 40.909 9.11 0.00 0.00 2.87
3537 4961 7.661847 CACATAAGAGAGAAGGTTGGTTTACTT 59.338 37.037 0.00 0.00 0.00 2.24
3757 5207 8.512956 TCCTCGATTCCTTTTATAGAAGTATCG 58.487 37.037 20.27 20.27 38.83 2.92
3781 5231 5.595952 AGGATCATTGCTATTTTTCAGGTCC 59.404 40.000 0.00 0.00 0.00 4.46
4099 5710 6.662755 TCTATTCCAGGACATTAACAGCAAT 58.337 36.000 0.00 0.00 0.00 3.56
4183 5842 1.069227 GTGAAACAAAGTAGCCGCAGG 60.069 52.381 0.00 0.00 46.48 4.85
4374 6057 0.039074 AGCTGGTTCGAGTCGACAAG 60.039 55.000 16.28 13.87 34.89 3.16
4487 6170 1.191489 TCCACGGTTCATGCCTCAGA 61.191 55.000 0.00 0.00 0.00 3.27
4503 6186 3.176411 TGAATCTTCTGAGGCTCTTCCA 58.824 45.455 16.72 0.00 37.29 3.53
4621 6304 4.860022 CCTTTCCATGTCAAGGGAACTAT 58.140 43.478 10.99 0.00 45.63 2.12
4667 6350 8.696043 ATTAGCTTTCCATGTCAATAATGCTA 57.304 30.769 0.00 0.00 35.03 3.49
4671 6354 9.976511 CATGAATTAGCTTTCCATGTCAATAAT 57.023 29.630 0.00 0.00 0.00 1.28
4691 6374 9.502091 TTGTTAACTAGCTTTCTACACATGAAT 57.498 29.630 7.22 0.00 0.00 2.57
4759 6502 8.798402 AGAAGTATTTCGAATCCTCCTATACAG 58.202 37.037 13.51 0.00 38.38 2.74
4775 6518 7.067981 TCGGAGGGAGTACTTAAGAAGTATTTC 59.932 40.741 10.09 4.50 45.05 2.17
4807 6550 9.673454 GGTTGTACCAAGTCAAAGTTAATTAAG 57.327 33.333 0.00 0.00 38.42 1.85
4814 6557 6.420638 ACTAAGGTTGTACCAAGTCAAAGTT 58.579 36.000 0.00 0.00 41.95 2.66
4817 6560 6.887013 TGTACTAAGGTTGTACCAAGTCAAA 58.113 36.000 7.03 0.00 41.95 2.69
4822 6565 7.281549 ACAACTTTGTACTAAGGTTGTACCAAG 59.718 37.037 23.78 12.94 43.37 3.61
4823 6566 7.111466 ACAACTTTGTACTAAGGTTGTACCAA 58.889 34.615 23.78 0.00 39.33 3.67
4824 6567 6.652053 ACAACTTTGTACTAAGGTTGTACCA 58.348 36.000 23.78 0.00 39.33 3.25
4856 6599 4.350346 TCAGATCAAAATTAATTGCGCCG 58.650 39.130 4.18 0.00 0.00 6.46
4871 6615 8.696374 CATAAACTTTAGTACTCCCTCAGATCA 58.304 37.037 0.00 0.00 0.00 2.92
4975 6786 1.472082 CGCCCTATCAAACACATGCAA 59.528 47.619 0.00 0.00 0.00 4.08
4997 6808 4.733165 TGAAGTACCCACACACTACTACT 58.267 43.478 0.00 0.00 0.00 2.57
4998 6809 4.522022 ACTGAAGTACCCACACACTACTAC 59.478 45.833 0.00 0.00 0.00 2.73
4999 6810 4.733165 ACTGAAGTACCCACACACTACTA 58.267 43.478 0.00 0.00 0.00 1.82
5061 6911 4.021102 AGTGCTACAAACTACAGGCATT 57.979 40.909 0.00 0.00 32.38 3.56
5155 7014 7.308782 ACTAAAACTGAGACAAAACAGAGTG 57.691 36.000 0.00 0.00 37.54 3.51
5175 7034 2.248280 TCAAAGTTGCGCTGGACTAA 57.752 45.000 9.73 0.00 0.00 2.24
5176 7035 2.143122 CTTCAAAGTTGCGCTGGACTA 58.857 47.619 9.73 0.00 0.00 2.59
5177 7036 0.947244 CTTCAAAGTTGCGCTGGACT 59.053 50.000 9.73 7.42 0.00 3.85
5178 7037 0.661483 GCTTCAAAGTTGCGCTGGAC 60.661 55.000 9.73 4.90 0.00 4.02
5179 7038 0.819259 AGCTTCAAAGTTGCGCTGGA 60.819 50.000 9.73 0.00 34.80 3.86
5180 7039 0.031178 AAGCTTCAAAGTTGCGCTGG 59.969 50.000 9.73 0.00 35.74 4.85
5181 7040 2.686558 TAAGCTTCAAAGTTGCGCTG 57.313 45.000 9.73 0.00 35.74 5.18
5182 7041 2.162408 GGATAAGCTTCAAAGTTGCGCT 59.838 45.455 9.73 2.95 36.63 5.92
5183 7042 2.095263 TGGATAAGCTTCAAAGTTGCGC 60.095 45.455 0.00 0.00 0.00 6.09
5184 7043 3.426695 CCTGGATAAGCTTCAAAGTTGCG 60.427 47.826 0.00 0.00 0.00 4.85
5185 7044 3.119352 CCCTGGATAAGCTTCAAAGTTGC 60.119 47.826 0.00 0.00 0.00 4.17
5186 7045 3.119352 GCCCTGGATAAGCTTCAAAGTTG 60.119 47.826 0.00 0.00 0.00 3.16
5187 7046 3.092301 GCCCTGGATAAGCTTCAAAGTT 58.908 45.455 0.00 0.00 0.00 2.66
5188 7047 2.041620 TGCCCTGGATAAGCTTCAAAGT 59.958 45.455 0.00 0.00 0.00 2.66
5189 7048 2.726821 TGCCCTGGATAAGCTTCAAAG 58.273 47.619 0.00 0.00 0.00 2.77
5190 7049 2.825532 GTTGCCCTGGATAAGCTTCAAA 59.174 45.455 0.00 0.00 0.00 2.69
5191 7050 2.041620 AGTTGCCCTGGATAAGCTTCAA 59.958 45.455 0.00 0.00 0.00 2.69
5192 7051 1.635487 AGTTGCCCTGGATAAGCTTCA 59.365 47.619 0.00 0.00 0.00 3.02
5193 7052 2.426842 AGTTGCCCTGGATAAGCTTC 57.573 50.000 0.00 0.00 0.00 3.86
5194 7053 2.827921 CAAAGTTGCCCTGGATAAGCTT 59.172 45.455 3.48 3.48 0.00 3.74
5195 7054 2.041620 TCAAAGTTGCCCTGGATAAGCT 59.958 45.455 0.00 0.00 0.00 3.74
5196 7055 2.446435 TCAAAGTTGCCCTGGATAAGC 58.554 47.619 0.00 0.00 0.00 3.09
5197 7056 3.119352 GCTTCAAAGTTGCCCTGGATAAG 60.119 47.826 0.00 0.00 0.00 1.73
5342 7255 4.708726 GTTGCATCAACTGGAGCTAATT 57.291 40.909 2.71 0.00 40.73 1.40
5427 7445 4.209080 GTGCATTTGTCTTGCTGTAAAACC 59.791 41.667 0.00 0.00 40.77 3.27
5489 7509 4.344679 TGAATGCCAGAACCAAAACAGATT 59.655 37.500 0.00 0.00 0.00 2.40
5526 7559 2.409975 TCCGCTACTAACAAACACTGC 58.590 47.619 0.00 0.00 0.00 4.40
5654 8297 4.022413 AGAGCTCTTCCTAAACCAAACC 57.978 45.455 11.45 0.00 0.00 3.27
5655 8298 6.392625 AAAAGAGCTCTTCCTAAACCAAAC 57.607 37.500 28.58 0.00 34.61 2.93
5656 8299 6.040504 GGAAAAAGAGCTCTTCCTAAACCAAA 59.959 38.462 28.58 0.00 36.48 3.28
5657 8300 5.535030 GGAAAAAGAGCTCTTCCTAAACCAA 59.465 40.000 28.58 0.00 36.48 3.67
5658 8301 5.070685 GGAAAAAGAGCTCTTCCTAAACCA 58.929 41.667 28.58 0.00 36.48 3.67
5756 8666 2.281484 GACTCTTGGTTGCCCGCA 60.281 61.111 0.00 0.00 0.00 5.69
5762 8672 2.936498 ACTGTTGAACGACTCTTGGTTG 59.064 45.455 0.00 0.00 35.50 3.77
5783 8693 2.281208 GCGTACCCCAGCAACACA 60.281 61.111 0.00 0.00 0.00 3.72
5785 8699 3.561241 TGGCGTACCCCAGCAACA 61.561 61.111 0.00 0.00 33.59 3.33
5795 8709 2.126189 GTCAGACCGGTGGCGTAC 60.126 66.667 14.63 0.00 0.00 3.67
5827 8742 2.095567 CGGCTTGAAACCAGTTCATCAG 60.096 50.000 0.00 0.00 45.71 2.90
5892 8807 0.526524 CAGAACATCGACCGAGAGCC 60.527 60.000 0.00 0.00 0.00 4.70
5918 8833 8.100135 AGATTAAATGGAAACTCTCTCCTCAT 57.900 34.615 0.00 0.00 33.77 2.90
5922 8837 9.103861 CAACTAGATTAAATGGAAACTCTCTCC 57.896 37.037 0.00 0.00 0.00 3.71
5923 8838 8.608317 GCAACTAGATTAAATGGAAACTCTCTC 58.392 37.037 0.00 0.00 0.00 3.20
5925 8840 8.499403 AGCAACTAGATTAAATGGAAACTCTC 57.501 34.615 0.00 0.00 0.00 3.20
5926 8841 9.959721 TTAGCAACTAGATTAAATGGAAACTCT 57.040 29.630 0.00 0.00 0.00 3.24
5929 8844 9.237846 GCATTAGCAACTAGATTAAATGGAAAC 57.762 33.333 0.00 0.00 41.58 2.78
5930 8845 9.189156 AGCATTAGCAACTAGATTAAATGGAAA 57.811 29.630 0.00 0.00 45.49 3.13
5933 8848 9.241317 CAAAGCATTAGCAACTAGATTAAATGG 57.759 33.333 0.00 0.00 45.49 3.16
5934 8849 9.793252 ACAAAGCATTAGCAACTAGATTAAATG 57.207 29.630 0.00 1.41 45.49 2.32
5939 8854 9.613428 TGTATACAAAGCATTAGCAACTAGATT 57.387 29.630 2.20 0.00 45.49 2.40
5940 8855 9.613428 TTGTATACAAAGCATTAGCAACTAGAT 57.387 29.630 15.92 0.00 45.49 1.98
5944 8859 9.927668 AATTTTGTATACAAAGCATTAGCAACT 57.072 25.926 25.62 0.95 45.34 3.16
5971 8886 8.978874 TGATTTTGTATTGTGTAGGCATCTAT 57.021 30.769 0.00 0.00 0.00 1.98
5972 8887 8.800370 TTGATTTTGTATTGTGTAGGCATCTA 57.200 30.769 0.00 0.00 0.00 1.98
5973 8888 7.701539 TTGATTTTGTATTGTGTAGGCATCT 57.298 32.000 0.00 0.00 0.00 2.90
5974 8889 8.755696 TTTTGATTTTGTATTGTGTAGGCATC 57.244 30.769 0.00 0.00 0.00 3.91
5975 8890 8.367156 ACTTTTGATTTTGTATTGTGTAGGCAT 58.633 29.630 0.00 0.00 0.00 4.40
5976 8891 7.721402 ACTTTTGATTTTGTATTGTGTAGGCA 58.279 30.769 0.00 0.00 0.00 4.75
6011 8926 9.918630 CAAATCTATGAATTTTCCAGTTTGACT 57.081 29.630 0.00 0.00 0.00 3.41
6012 8927 8.650714 GCAAATCTATGAATTTTCCAGTTTGAC 58.349 33.333 0.00 0.00 0.00 3.18
6013 8928 8.366401 TGCAAATCTATGAATTTTCCAGTTTGA 58.634 29.630 0.00 0.00 0.00 2.69
6014 8929 8.537049 TGCAAATCTATGAATTTTCCAGTTTG 57.463 30.769 0.00 0.00 0.00 2.93
6015 8930 7.820872 CCTGCAAATCTATGAATTTTCCAGTTT 59.179 33.333 0.00 0.00 30.66 2.66
6016 8931 7.178983 TCCTGCAAATCTATGAATTTTCCAGTT 59.821 33.333 0.00 0.00 30.66 3.16
6017 8932 6.664816 TCCTGCAAATCTATGAATTTTCCAGT 59.335 34.615 0.00 0.00 30.66 4.00
6018 8933 7.104043 TCCTGCAAATCTATGAATTTTCCAG 57.896 36.000 0.00 0.00 31.52 3.86
6019 8934 7.039152 TGTTCCTGCAAATCTATGAATTTTCCA 60.039 33.333 0.00 0.00 0.00 3.53
6020 8935 7.322664 TGTTCCTGCAAATCTATGAATTTTCC 58.677 34.615 0.00 0.00 0.00 3.13
6021 8936 8.937634 ATGTTCCTGCAAATCTATGAATTTTC 57.062 30.769 0.00 0.00 0.00 2.29
6022 8937 8.755977 AGATGTTCCTGCAAATCTATGAATTTT 58.244 29.630 0.00 0.00 0.00 1.82
6023 8938 8.195436 CAGATGTTCCTGCAAATCTATGAATTT 58.805 33.333 0.00 0.00 0.00 1.82
6024 8939 7.341256 ACAGATGTTCCTGCAAATCTATGAATT 59.659 33.333 0.00 0.00 37.68 2.17
6025 8940 6.832384 ACAGATGTTCCTGCAAATCTATGAAT 59.168 34.615 0.00 0.00 37.68 2.57
6030 8945 6.048732 TGTACAGATGTTCCTGCAAATCTA 57.951 37.500 0.00 0.00 37.68 1.98
6031 8946 4.910195 TGTACAGATGTTCCTGCAAATCT 58.090 39.130 0.00 0.00 37.68 2.40
6032 8947 5.824904 ATGTACAGATGTTCCTGCAAATC 57.175 39.130 0.33 0.00 37.68 2.17
6033 8948 7.629222 GCTTTATGTACAGATGTTCCTGCAAAT 60.629 37.037 0.33 0.00 37.68 2.32
6034 8949 6.349280 GCTTTATGTACAGATGTTCCTGCAAA 60.349 38.462 0.33 0.00 37.68 3.68
6035 8950 5.123820 GCTTTATGTACAGATGTTCCTGCAA 59.876 40.000 0.33 0.00 37.68 4.08
6036 8951 4.635765 GCTTTATGTACAGATGTTCCTGCA 59.364 41.667 0.33 0.00 37.68 4.41
6037 8952 4.035675 GGCTTTATGTACAGATGTTCCTGC 59.964 45.833 0.33 0.00 37.68 4.85
6038 8953 5.431765 AGGCTTTATGTACAGATGTTCCTG 58.568 41.667 0.33 0.00 39.93 3.86
6039 8954 5.700402 AGGCTTTATGTACAGATGTTCCT 57.300 39.130 0.33 0.79 0.00 3.36
6040 8955 6.759497 AAAGGCTTTATGTACAGATGTTCC 57.241 37.500 11.52 0.00 0.00 3.62
6041 8956 7.094377 TGGAAAAGGCTTTATGTACAGATGTTC 60.094 37.037 13.77 2.06 0.00 3.18
6042 8957 6.719370 TGGAAAAGGCTTTATGTACAGATGTT 59.281 34.615 13.77 0.00 0.00 2.71
6043 8958 6.245408 TGGAAAAGGCTTTATGTACAGATGT 58.755 36.000 13.77 0.00 0.00 3.06
6044 8959 6.757897 TGGAAAAGGCTTTATGTACAGATG 57.242 37.500 13.77 0.00 0.00 2.90
6046 8961 6.480763 TGATGGAAAAGGCTTTATGTACAGA 58.519 36.000 13.77 0.00 0.00 3.41
6047 8962 6.757897 TGATGGAAAAGGCTTTATGTACAG 57.242 37.500 13.77 0.00 0.00 2.74
6048 8963 7.232534 ACTTTGATGGAAAAGGCTTTATGTACA 59.767 33.333 13.77 5.16 40.74 2.90
6051 8966 6.670695 ACTTTGATGGAAAAGGCTTTATGT 57.329 33.333 13.77 0.00 40.74 2.29
6052 8967 8.253113 ACATACTTTGATGGAAAAGGCTTTATG 58.747 33.333 13.77 10.57 40.74 1.90
6054 8969 7.775053 ACATACTTTGATGGAAAAGGCTTTA 57.225 32.000 13.77 0.00 40.74 1.85
6055 8970 6.670695 ACATACTTTGATGGAAAAGGCTTT 57.329 33.333 6.68 6.68 40.74 3.51
6056 8971 6.719370 TGTACATACTTTGATGGAAAAGGCTT 59.281 34.615 0.00 0.00 40.74 4.35
6057 8972 6.245408 TGTACATACTTTGATGGAAAAGGCT 58.755 36.000 0.00 0.00 40.74 4.58
6059 8974 9.173021 TGTATGTACATACTTTGATGGAAAAGG 57.827 33.333 34.51 0.00 43.04 3.11
6095 9584 8.525316 TGAACGAGTCCTACATTCTTATGTTAA 58.475 33.333 0.00 0.00 42.29 2.01
6096 9585 8.058667 TGAACGAGTCCTACATTCTTATGTTA 57.941 34.615 0.00 0.00 42.29 2.41
6104 9593 7.829378 ATAGTTTTGAACGAGTCCTACATTC 57.171 36.000 0.00 0.00 36.23 2.67
6107 9596 7.211573 TCAAATAGTTTTGAACGAGTCCTACA 58.788 34.615 0.00 0.00 46.26 2.74
6108 9597 7.647907 TCAAATAGTTTTGAACGAGTCCTAC 57.352 36.000 0.00 0.00 46.26 3.18
6151 9641 9.747898 TGTGCTCCCTTATTTTAAGAAATTCTA 57.252 29.630 0.00 0.00 36.82 2.10
6160 9650 7.554118 CAGAGAAGATGTGCTCCCTTATTTTAA 59.446 37.037 0.00 0.00 0.00 1.52
6162 9652 5.884792 CAGAGAAGATGTGCTCCCTTATTTT 59.115 40.000 0.00 0.00 0.00 1.82
6185 9675 4.971939 TGATGACTTCAGTGATCAAACCA 58.028 39.130 6.63 0.00 43.71 3.67
6200 9691 3.607741 CTGGACTGCTCAATTGATGACT 58.392 45.455 8.96 0.00 33.47 3.41
6207 9698 2.508526 GTGAACCTGGACTGCTCAATT 58.491 47.619 0.00 0.00 0.00 2.32
6216 9707 6.980416 ATAGATAACTAGGTGAACCTGGAC 57.020 41.667 18.68 7.62 46.37 4.02
6247 9738 4.662278 TCACCCAAATTGTTCTCCCTAAG 58.338 43.478 0.00 0.00 0.00 2.18
6251 9742 4.600062 AGTATCACCCAAATTGTTCTCCC 58.400 43.478 0.00 0.00 0.00 4.30
6255 9746 8.655651 TTGAAAAAGTATCACCCAAATTGTTC 57.344 30.769 0.00 0.00 0.00 3.18
6269 9760 7.341445 TGTGCCTTGTACTTTGAAAAAGTAT 57.659 32.000 13.94 0.00 35.46 2.12
6271 9762 5.652994 TGTGCCTTGTACTTTGAAAAAGT 57.347 34.783 10.04 10.04 0.00 2.66
6272 9763 8.816640 AATATGTGCCTTGTACTTTGAAAAAG 57.183 30.769 0.00 0.00 0.00 2.27
6353 9844 7.232534 TCTCTGTTTGTTTGGCCATACTTTATT 59.767 33.333 24.26 0.00 0.00 1.40
6358 9849 4.098914 TCTCTGTTTGTTTGGCCATACT 57.901 40.909 24.26 0.00 0.00 2.12
6359 9850 4.846779 TTCTCTGTTTGTTTGGCCATAC 57.153 40.909 18.46 18.46 0.00 2.39
6360 9851 4.038642 GGTTTCTCTGTTTGTTTGGCCATA 59.961 41.667 6.09 0.00 0.00 2.74
6361 9852 3.181466 GGTTTCTCTGTTTGTTTGGCCAT 60.181 43.478 6.09 0.00 0.00 4.40
6362 9853 2.167487 GGTTTCTCTGTTTGTTTGGCCA 59.833 45.455 0.00 0.00 0.00 5.36
6363 9854 2.798145 CGGTTTCTCTGTTTGTTTGGCC 60.798 50.000 0.00 0.00 0.00 5.36
6364 9855 2.459934 CGGTTTCTCTGTTTGTTTGGC 58.540 47.619 0.00 0.00 0.00 4.52
6365 9856 2.099098 AGCGGTTTCTCTGTTTGTTTGG 59.901 45.455 0.00 0.00 0.00 3.28
6366 9857 3.420839 AGCGGTTTCTCTGTTTGTTTG 57.579 42.857 0.00 0.00 0.00 2.93
6367 9858 4.196971 ACTAGCGGTTTCTCTGTTTGTTT 58.803 39.130 0.00 0.00 0.00 2.83
6368 9859 3.805207 ACTAGCGGTTTCTCTGTTTGTT 58.195 40.909 0.00 0.00 0.00 2.83
6387 9878 4.145052 GTCTGGGGAACATGAAAGAAACT 58.855 43.478 0.00 0.00 0.00 2.66
6394 9885 4.764823 GTGTTATTGTCTGGGGAACATGAA 59.235 41.667 0.00 0.00 32.99 2.57
6395 9886 4.331968 GTGTTATTGTCTGGGGAACATGA 58.668 43.478 0.00 0.00 32.99 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.