Multiple sequence alignment - TraesCS6A01G048700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G048700 chr6A 100.000 5618 0 0 1 5618 24837784 24843401 0.000000e+00 10375
1 TraesCS6A01G048700 chr6A 89.461 2429 214 25 717 3117 25017692 25020106 0.000000e+00 3029
2 TraesCS6A01G048700 chr6A 89.421 2193 226 5 902 3090 25631471 25633661 0.000000e+00 2760
3 TraesCS6A01G048700 chr6A 90.288 2049 181 11 717 2751 24853500 24855544 0.000000e+00 2665
4 TraesCS6A01G048700 chr6A 83.741 2085 233 62 3300 5297 24856136 24858201 0.000000e+00 1875
5 TraesCS6A01G048700 chr6A 86.336 1332 132 20 3318 4639 25020406 25021697 0.000000e+00 1406
6 TraesCS6A01G048700 chr6A 93.488 430 16 3 194 623 98319233 98319650 3.690000e-176 628
7 TraesCS6A01G048700 chr6A 82.353 408 48 10 79 477 29545499 29545107 3.240000e-87 333
8 TraesCS6A01G048700 chr6A 92.000 100 8 0 523 622 29545103 29545004 2.110000e-29 141
9 TraesCS6A01G048700 chr6A 87.603 121 13 2 503 623 614852003 614851885 7.590000e-29 139
10 TraesCS6A01G048700 chrUn 94.562 3439 153 15 623 4031 94047197 94050631 0.000000e+00 5284
11 TraesCS6A01G048700 chrUn 89.402 2425 222 19 717 3117 94220677 94223090 0.000000e+00 3022
12 TraesCS6A01G048700 chrUn 88.969 2484 219 28 717 3150 94179311 94181789 0.000000e+00 3018
13 TraesCS6A01G048700 chrUn 88.058 2395 255 17 718 3090 94817895 94820280 0.000000e+00 2809
14 TraesCS6A01G048700 chrUn 96.424 1566 35 4 4059 5618 94050630 94052180 0.000000e+00 2562
15 TraesCS6A01G048700 chrUn 83.373 2087 237 58 3300 5297 94182057 94184122 0.000000e+00 1831
16 TraesCS6A01G048700 chrUn 88.030 660 57 16 3317 3972 94223347 94223988 0.000000e+00 761
17 TraesCS6A01G048700 chrUn 85.562 658 70 11 3982 4637 94224158 94224792 0.000000e+00 665
18 TraesCS6A01G048700 chrUn 76.061 330 50 17 4826 5143 94243195 94243507 1.630000e-30 145
19 TraesCS6A01G048700 chrUn 91.026 78 6 1 1 78 94047128 94047204 2.770000e-18 104
20 TraesCS6A01G048700 chr6B 95.319 2521 97 13 623 3133 43281424 43283933 0.000000e+00 3982
21 TraesCS6A01G048700 chr6B 89.305 2431 213 23 717 3117 43498443 43500856 0.000000e+00 3005
22 TraesCS6A01G048700 chr6B 87.393 2451 281 17 718 3148 44100036 44102478 0.000000e+00 2789
23 TraesCS6A01G048700 chr6B 95.776 1444 59 2 3258 4700 43284201 43285643 0.000000e+00 2327
24 TraesCS6A01G048700 chr6B 85.267 1724 193 34 3299 4980 43350822 43352526 0.000000e+00 1720
25 TraesCS6A01G048700 chr6B 86.117 1347 141 26 3299 4639 43501095 43502401 0.000000e+00 1410
26 TraesCS6A01G048700 chr6B 84.255 1194 171 17 3332 4511 44102626 44103816 0.000000e+00 1147
27 TraesCS6A01G048700 chr6B 89.384 763 56 19 4742 5487 43285648 43286402 0.000000e+00 937
28 TraesCS6A01G048700 chr6B 96.629 89 3 0 3183 3271 43284098 43284186 1.260000e-31 148
29 TraesCS6A01G048700 chr6B 76.230 366 38 26 4810 5150 43502645 43502986 1.260000e-31 148
30 TraesCS6A01G048700 chr6B 91.589 107 5 2 5513 5618 43286501 43286604 1.630000e-30 145
31 TraesCS6A01G048700 chr6B 90.667 75 5 2 5070 5143 43801254 43801327 1.290000e-16 99
32 TraesCS6A01G048700 chr3A 89.744 390 23 9 79 468 646578779 646578407 3.040000e-132 483
33 TraesCS6A01G048700 chr3A 89.308 159 17 0 464 622 646577163 646577005 3.430000e-47 200
34 TraesCS6A01G048700 chr3A 81.884 138 19 4 486 623 654397276 654397145 1.650000e-20 111
35 TraesCS6A01G048700 chr5D 84.278 388 33 17 80 463 466559832 466559469 2.490000e-93 353
36 TraesCS6A01G048700 chr5D 81.481 405 49 10 79 474 184479823 184479436 5.470000e-80 309
37 TraesCS6A01G048700 chr5D 92.000 100 8 0 523 622 184479429 184479330 2.110000e-29 141
38 TraesCS6A01G048700 chr5D 91.071 56 4 1 455 509 466500488 466500433 2.170000e-09 75
39 TraesCS6A01G048700 chr5A 82.353 408 49 10 79 477 502586949 502586556 3.240000e-87 333
40 TraesCS6A01G048700 chr5A 94.000 100 6 0 523 622 502586552 502586453 9.750000e-33 152
41 TraesCS6A01G048700 chr4B 82.353 408 46 8 79 477 656912162 656911772 1.170000e-86 331
42 TraesCS6A01G048700 chr4B 92.233 103 7 1 523 625 656911768 656911667 1.630000e-30 145
43 TraesCS6A01G048700 chr7A 82.206 399 46 10 79 468 649681775 649682157 2.530000e-83 320
44 TraesCS6A01G048700 chr7A 90.000 100 10 0 523 622 649682170 649682269 4.570000e-26 130
45 TraesCS6A01G048700 chr2A 91.367 139 10 2 362 500 23956645 23956781 7.430000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G048700 chr6A 24837784 24843401 5617 False 10375.000000 10375 100.000000 1 5618 1 chr6A.!!$F1 5617
1 TraesCS6A01G048700 chr6A 25631471 25633661 2190 False 2760.000000 2760 89.421000 902 3090 1 chr6A.!!$F2 2188
2 TraesCS6A01G048700 chr6A 24853500 24858201 4701 False 2270.000000 2665 87.014500 717 5297 2 chr6A.!!$F4 4580
3 TraesCS6A01G048700 chr6A 25017692 25021697 4005 False 2217.500000 3029 87.898500 717 4639 2 chr6A.!!$F5 3922
4 TraesCS6A01G048700 chrUn 94817895 94820280 2385 False 2809.000000 2809 88.058000 718 3090 1 chrUn.!!$F2 2372
5 TraesCS6A01G048700 chrUn 94047128 94052180 5052 False 2650.000000 5284 94.004000 1 5618 3 chrUn.!!$F3 5617
6 TraesCS6A01G048700 chrUn 94179311 94184122 4811 False 2424.500000 3018 86.171000 717 5297 2 chrUn.!!$F4 4580
7 TraesCS6A01G048700 chrUn 94220677 94224792 4115 False 1482.666667 3022 87.664667 717 4637 3 chrUn.!!$F5 3920
8 TraesCS6A01G048700 chr6B 44100036 44103816 3780 False 1968.000000 2789 85.824000 718 4511 2 chr6B.!!$F5 3793
9 TraesCS6A01G048700 chr6B 43350822 43352526 1704 False 1720.000000 1720 85.267000 3299 4980 1 chr6B.!!$F1 1681
10 TraesCS6A01G048700 chr6B 43498443 43502986 4543 False 1521.000000 3005 83.884000 717 5150 3 chr6B.!!$F4 4433
11 TraesCS6A01G048700 chr6B 43281424 43286604 5180 False 1507.800000 3982 93.739400 623 5618 5 chr6B.!!$F3 4995
12 TraesCS6A01G048700 chr3A 646577005 646578779 1774 True 341.500000 483 89.526000 79 622 2 chr3A.!!$R2 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 608 0.033920 GGCCTTGTTTTGCCCTCAAG 59.966 55.000 0.00 0.00 41.97 3.02 F
615 616 0.606401 TTTGCCCTCAAGAAGCTCCG 60.606 55.000 0.00 0.00 33.12 4.63 F
1050 1102 0.616111 TCTCTCTGCTCCTGTTCCCC 60.616 60.000 0.00 0.00 0.00 4.81 F
1571 1628 0.956633 CTGTGGCAGCACTTGTTGAT 59.043 50.000 0.00 0.00 0.00 2.57 F
1874 1931 1.301244 AACTGACTGGCTGTCTGCG 60.301 57.895 24.31 15.53 45.01 5.18 F
2489 3506 2.373836 TCGAGGATGGGTTTTTCCTTCA 59.626 45.455 0.00 0.00 42.48 3.02 F
4094 5703 1.034838 TCCTTGCACTTGTTTGCGGT 61.035 50.000 0.00 0.00 46.20 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2360 3377 1.004862 TCTGGAGAGATGGTCGACAGT 59.995 52.381 18.91 4.58 36.06 3.55 R
2489 3506 6.486320 CACCAATTTTTAACTCCTTGGCATTT 59.514 34.615 0.00 0.00 39.98 2.32 R
2833 3883 2.224281 TGGCTGGGTGAAATCTATAGCG 60.224 50.000 0.00 0.00 0.00 4.26 R
3501 4906 1.002366 GAAATCGTGAGTCATGCGCT 58.998 50.000 9.73 0.00 0.00 5.92 R
3795 5210 0.308993 GGGCATCAGCGTATTCTTGC 59.691 55.000 0.00 0.00 43.41 4.01 R
4455 6066 2.168521 TGGCTCCTTCTTATGGACGAAG 59.831 50.000 0.00 0.00 37.09 3.79 R
5306 7282 2.789409 AACAAGTAGCTAGCTTGGGG 57.211 50.000 24.88 13.06 45.38 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.278419 GCTTTCAGTTAAGGACCACATTGT 59.722 41.667 0.00 0.00 0.00 2.71
36 37 5.221244 GCTTTCAGTTAAGGACCACATTGTT 60.221 40.000 0.00 0.00 0.00 2.83
65 66 1.377725 CTTGGATGCTTGTCGGCCT 60.378 57.895 0.00 0.00 0.00 5.19
66 67 1.372087 CTTGGATGCTTGTCGGCCTC 61.372 60.000 0.00 0.00 0.00 4.70
68 69 1.377202 GGATGCTTGTCGGCCTCAA 60.377 57.895 0.00 5.60 0.00 3.02
69 70 1.648467 GGATGCTTGTCGGCCTCAAC 61.648 60.000 0.00 0.00 0.00 3.18
70 71 1.648467 GATGCTTGTCGGCCTCAACC 61.648 60.000 0.00 0.00 0.00 3.77
71 72 2.032681 GCTTGTCGGCCTCAACCT 59.967 61.111 0.00 0.00 0.00 3.50
72 73 1.600916 GCTTGTCGGCCTCAACCTT 60.601 57.895 0.00 0.00 0.00 3.50
73 74 1.856265 GCTTGTCGGCCTCAACCTTG 61.856 60.000 0.00 0.00 0.00 3.61
74 75 1.228124 TTGTCGGCCTCAACCTTGG 60.228 57.895 0.00 0.00 0.00 3.61
75 76 1.701031 TTGTCGGCCTCAACCTTGGA 61.701 55.000 0.00 0.00 0.00 3.53
76 77 1.299976 GTCGGCCTCAACCTTGGAT 59.700 57.895 0.00 0.00 0.00 3.41
77 78 0.744771 GTCGGCCTCAACCTTGGATC 60.745 60.000 0.00 0.00 0.00 3.36
152 153 9.152595 GATGCTAAACCATATAGTTAAGTAGGC 57.847 37.037 0.00 0.00 0.00 3.93
153 154 8.025270 TGCTAAACCATATAGTTAAGTAGGCA 57.975 34.615 0.00 0.00 0.00 4.75
154 155 8.656806 TGCTAAACCATATAGTTAAGTAGGCAT 58.343 33.333 0.00 0.00 0.00 4.40
155 156 9.503399 GCTAAACCATATAGTTAAGTAGGCATT 57.497 33.333 0.00 0.00 0.00 3.56
160 161 9.375974 ACCATATAGTTAAGTAGGCATTAGTCA 57.624 33.333 0.00 0.00 0.00 3.41
161 162 9.862371 CCATATAGTTAAGTAGGCATTAGTCAG 57.138 37.037 0.00 0.00 0.00 3.51
164 165 6.852420 AGTTAAGTAGGCATTAGTCAGTGA 57.148 37.500 0.00 0.00 0.00 3.41
165 166 7.241042 AGTTAAGTAGGCATTAGTCAGTGAA 57.759 36.000 0.00 0.00 0.00 3.18
166 167 7.676947 AGTTAAGTAGGCATTAGTCAGTGAAA 58.323 34.615 0.00 0.00 0.00 2.69
167 168 8.322091 AGTTAAGTAGGCATTAGTCAGTGAAAT 58.678 33.333 0.00 0.00 0.00 2.17
168 169 8.947115 GTTAAGTAGGCATTAGTCAGTGAAATT 58.053 33.333 0.00 0.00 0.00 1.82
169 170 9.515226 TTAAGTAGGCATTAGTCAGTGAAATTT 57.485 29.630 0.00 0.00 0.00 1.82
170 171 7.617041 AGTAGGCATTAGTCAGTGAAATTTC 57.383 36.000 11.41 11.41 0.00 2.17
171 172 7.168219 AGTAGGCATTAGTCAGTGAAATTTCA 58.832 34.615 16.91 16.91 34.20 2.69
172 173 6.506500 AGGCATTAGTCAGTGAAATTTCAG 57.493 37.500 21.05 10.76 37.98 3.02
173 174 5.416952 AGGCATTAGTCAGTGAAATTTCAGG 59.583 40.000 21.05 15.72 37.98 3.86
174 175 5.183904 GGCATTAGTCAGTGAAATTTCAGGT 59.816 40.000 21.05 8.99 37.98 4.00
175 176 6.294731 GGCATTAGTCAGTGAAATTTCAGGTT 60.295 38.462 21.05 7.45 37.98 3.50
176 177 6.583806 GCATTAGTCAGTGAAATTTCAGGTTG 59.416 38.462 21.05 17.90 37.98 3.77
177 178 4.574599 AGTCAGTGAAATTTCAGGTTGC 57.425 40.909 21.05 9.16 37.98 4.17
178 179 4.210331 AGTCAGTGAAATTTCAGGTTGCT 58.790 39.130 21.05 11.28 37.98 3.91
179 180 4.037208 AGTCAGTGAAATTTCAGGTTGCTG 59.963 41.667 21.05 21.17 37.98 4.41
180 181 3.953612 TCAGTGAAATTTCAGGTTGCTGT 59.046 39.130 21.05 0.00 37.98 4.40
181 182 5.008613 GTCAGTGAAATTTCAGGTTGCTGTA 59.991 40.000 21.05 10.92 37.98 2.74
182 183 5.769662 TCAGTGAAATTTCAGGTTGCTGTAT 59.230 36.000 21.05 0.00 37.98 2.29
183 184 6.939730 TCAGTGAAATTTCAGGTTGCTGTATA 59.060 34.615 21.05 6.38 37.98 1.47
184 185 7.119699 TCAGTGAAATTTCAGGTTGCTGTATAG 59.880 37.037 21.05 3.11 37.98 1.31
185 186 6.375455 AGTGAAATTTCAGGTTGCTGTATAGG 59.625 38.462 21.05 0.00 37.98 2.57
186 187 5.652014 TGAAATTTCAGGTTGCTGTATAGGG 59.348 40.000 16.91 0.00 32.50 3.53
187 188 5.450818 AATTTCAGGTTGCTGTATAGGGA 57.549 39.130 0.00 0.00 0.00 4.20
188 189 4.919774 TTTCAGGTTGCTGTATAGGGAA 57.080 40.909 0.00 0.00 0.00 3.97
189 190 4.919774 TTCAGGTTGCTGTATAGGGAAA 57.080 40.909 0.00 0.00 0.00 3.13
190 191 4.216411 TCAGGTTGCTGTATAGGGAAAC 57.784 45.455 0.00 0.00 0.00 2.78
191 192 3.844211 TCAGGTTGCTGTATAGGGAAACT 59.156 43.478 0.00 0.00 32.44 2.66
192 193 3.941483 CAGGTTGCTGTATAGGGAAACTG 59.059 47.826 9.39 9.39 41.74 3.16
193 194 3.054361 AGGTTGCTGTATAGGGAAACTGG 60.054 47.826 0.00 0.00 31.14 4.00
194 195 3.308188 GGTTGCTGTATAGGGAAACTGGT 60.308 47.826 0.00 0.00 0.00 4.00
195 196 4.080751 GGTTGCTGTATAGGGAAACTGGTA 60.081 45.833 0.00 0.00 0.00 3.25
196 197 5.397559 GGTTGCTGTATAGGGAAACTGGTAT 60.398 44.000 0.00 0.00 0.00 2.73
197 198 5.546621 TGCTGTATAGGGAAACTGGTATC 57.453 43.478 0.00 0.00 0.00 2.24
198 199 4.038763 TGCTGTATAGGGAAACTGGTATCG 59.961 45.833 0.00 0.00 0.00 2.92
199 200 4.280174 GCTGTATAGGGAAACTGGTATCGA 59.720 45.833 0.00 0.00 0.00 3.59
200 201 5.565045 GCTGTATAGGGAAACTGGTATCGAG 60.565 48.000 0.00 0.00 0.00 4.04
201 202 5.698104 TGTATAGGGAAACTGGTATCGAGA 58.302 41.667 0.00 0.00 0.00 4.04
202 203 6.312529 TGTATAGGGAAACTGGTATCGAGAT 58.687 40.000 0.00 0.00 0.00 2.75
203 204 5.730296 ATAGGGAAACTGGTATCGAGATG 57.270 43.478 0.00 0.00 0.00 2.90
204 205 3.643237 AGGGAAACTGGTATCGAGATGA 58.357 45.455 0.00 0.00 0.00 2.92
205 206 4.227197 AGGGAAACTGGTATCGAGATGAT 58.773 43.478 0.00 0.00 41.30 2.45
206 207 4.039730 AGGGAAACTGGTATCGAGATGATG 59.960 45.833 0.00 0.00 37.99 3.07
207 208 4.202264 GGGAAACTGGTATCGAGATGATGT 60.202 45.833 0.00 0.00 37.99 3.06
208 209 5.360591 GGAAACTGGTATCGAGATGATGTT 58.639 41.667 0.00 0.00 37.99 2.71
209 210 5.235186 GGAAACTGGTATCGAGATGATGTTG 59.765 44.000 0.00 0.00 37.99 3.33
210 211 5.344743 AACTGGTATCGAGATGATGTTGT 57.655 39.130 0.00 0.00 37.99 3.32
211 212 4.938080 ACTGGTATCGAGATGATGTTGTC 58.062 43.478 0.00 0.00 37.99 3.18
212 213 4.402474 ACTGGTATCGAGATGATGTTGTCA 59.598 41.667 0.00 0.00 42.06 3.58
213 214 5.105351 ACTGGTATCGAGATGATGTTGTCAA 60.105 40.000 0.00 0.00 40.97 3.18
214 215 5.351458 TGGTATCGAGATGATGTTGTCAAG 58.649 41.667 0.00 0.00 40.97 3.02
215 216 5.105351 TGGTATCGAGATGATGTTGTCAAGT 60.105 40.000 0.00 0.00 40.97 3.16
216 217 6.096282 TGGTATCGAGATGATGTTGTCAAGTA 59.904 38.462 0.00 0.00 40.97 2.24
217 218 6.978659 GGTATCGAGATGATGTTGTCAAGTAA 59.021 38.462 0.00 0.00 40.97 2.24
218 219 7.491372 GGTATCGAGATGATGTTGTCAAGTAAA 59.509 37.037 0.00 0.00 40.97 2.01
219 220 7.905604 ATCGAGATGATGTTGTCAAGTAAAA 57.094 32.000 0.00 0.00 40.97 1.52
220 221 7.905604 TCGAGATGATGTTGTCAAGTAAAAT 57.094 32.000 0.00 0.00 40.97 1.82
221 222 8.322906 TCGAGATGATGTTGTCAAGTAAAATT 57.677 30.769 0.00 0.00 40.97 1.82
222 223 8.783093 TCGAGATGATGTTGTCAAGTAAAATTT 58.217 29.630 0.00 0.00 40.97 1.82
223 224 8.843733 CGAGATGATGTTGTCAAGTAAAATTTG 58.156 33.333 0.00 0.00 40.97 2.32
224 225 9.897744 GAGATGATGTTGTCAAGTAAAATTTGA 57.102 29.630 0.00 0.00 40.97 2.69
254 255 4.820284 AGGAAATTTCTTATGCGCTAGC 57.180 40.909 17.42 4.06 45.41 3.42
255 256 4.455606 AGGAAATTTCTTATGCGCTAGCT 58.544 39.130 17.42 0.00 45.42 3.32
256 257 4.274459 AGGAAATTTCTTATGCGCTAGCTG 59.726 41.667 17.42 7.67 45.42 4.24
257 258 3.615849 AATTTCTTATGCGCTAGCTGC 57.384 42.857 20.03 20.03 45.42 5.25
258 259 1.299541 TTTCTTATGCGCTAGCTGCC 58.700 50.000 22.62 8.95 45.42 4.85
259 260 0.465705 TTCTTATGCGCTAGCTGCCT 59.534 50.000 22.62 17.35 45.42 4.75
260 261 1.328279 TCTTATGCGCTAGCTGCCTA 58.672 50.000 22.62 16.54 45.42 3.93
261 262 1.270826 TCTTATGCGCTAGCTGCCTAG 59.729 52.381 22.62 17.40 45.42 3.02
262 263 1.000283 CTTATGCGCTAGCTGCCTAGT 60.000 52.381 22.62 12.21 42.51 2.57
263 264 1.040646 TATGCGCTAGCTGCCTAGTT 58.959 50.000 22.62 9.64 42.51 2.24
264 265 0.249657 ATGCGCTAGCTGCCTAGTTC 60.250 55.000 22.62 1.69 42.51 3.01
265 266 1.323271 TGCGCTAGCTGCCTAGTTCT 61.323 55.000 22.62 0.00 42.51 3.01
266 267 0.669077 GCGCTAGCTGCCTAGTTCTA 59.331 55.000 13.93 0.00 42.51 2.10
267 268 1.271102 GCGCTAGCTGCCTAGTTCTAT 59.729 52.381 13.93 0.00 42.51 1.98
268 269 2.924454 GCGCTAGCTGCCTAGTTCTATG 60.924 54.545 13.93 0.00 42.51 2.23
269 270 2.352225 CGCTAGCTGCCTAGTTCTATGG 60.352 54.545 13.93 0.00 42.51 2.74
270 271 2.630580 GCTAGCTGCCTAGTTCTATGGT 59.369 50.000 7.70 0.00 42.51 3.55
271 272 3.305744 GCTAGCTGCCTAGTTCTATGGTC 60.306 52.174 7.70 0.00 42.51 4.02
272 273 3.039252 AGCTGCCTAGTTCTATGGTCT 57.961 47.619 0.00 0.00 0.00 3.85
273 274 3.379452 AGCTGCCTAGTTCTATGGTCTT 58.621 45.455 0.00 0.00 0.00 3.01
274 275 3.133721 AGCTGCCTAGTTCTATGGTCTTG 59.866 47.826 0.00 0.00 0.00 3.02
275 276 3.118592 GCTGCCTAGTTCTATGGTCTTGT 60.119 47.826 0.00 0.00 0.00 3.16
276 277 4.437239 CTGCCTAGTTCTATGGTCTTGTG 58.563 47.826 0.00 0.00 0.00 3.33
277 278 3.198872 GCCTAGTTCTATGGTCTTGTGC 58.801 50.000 0.00 0.00 0.00 4.57
278 279 3.118592 GCCTAGTTCTATGGTCTTGTGCT 60.119 47.826 0.00 0.00 0.00 4.40
279 280 4.688021 CCTAGTTCTATGGTCTTGTGCTC 58.312 47.826 0.00 0.00 0.00 4.26
280 281 3.238108 AGTTCTATGGTCTTGTGCTCG 57.762 47.619 0.00 0.00 0.00 5.03
281 282 2.563179 AGTTCTATGGTCTTGTGCTCGT 59.437 45.455 0.00 0.00 0.00 4.18
282 283 3.006967 AGTTCTATGGTCTTGTGCTCGTT 59.993 43.478 0.00 0.00 0.00 3.85
283 284 2.959516 TCTATGGTCTTGTGCTCGTTG 58.040 47.619 0.00 0.00 0.00 4.10
284 285 1.394917 CTATGGTCTTGTGCTCGTTGC 59.605 52.381 0.00 0.00 43.25 4.17
285 286 1.237285 ATGGTCTTGTGCTCGTTGCC 61.237 55.000 1.30 0.00 42.00 4.52
286 287 1.598130 GGTCTTGTGCTCGTTGCCT 60.598 57.895 1.30 0.00 42.00 4.75
287 288 1.571460 GTCTTGTGCTCGTTGCCTG 59.429 57.895 1.30 0.00 42.00 4.85
288 289 1.597854 TCTTGTGCTCGTTGCCTGG 60.598 57.895 0.00 0.00 42.00 4.45
289 290 2.594303 TTGTGCTCGTTGCCTGGG 60.594 61.111 0.00 0.00 42.00 4.45
290 291 3.414136 TTGTGCTCGTTGCCTGGGT 62.414 57.895 0.00 0.00 42.00 4.51
291 292 2.046009 TTGTGCTCGTTGCCTGGGTA 62.046 55.000 0.00 0.00 42.00 3.69
292 293 1.741770 GTGCTCGTTGCCTGGGTAG 60.742 63.158 0.00 0.00 42.00 3.18
293 294 2.820037 GCTCGTTGCCTGGGTAGC 60.820 66.667 0.00 0.00 35.15 3.58
294 295 2.982130 CTCGTTGCCTGGGTAGCT 59.018 61.111 0.00 0.00 0.00 3.32
295 296 1.956629 GCTCGTTGCCTGGGTAGCTA 61.957 60.000 0.00 0.00 35.15 3.32
296 297 0.103208 CTCGTTGCCTGGGTAGCTAG 59.897 60.000 0.00 0.00 0.00 3.42
297 298 1.521681 CGTTGCCTGGGTAGCTAGC 60.522 63.158 14.67 14.67 0.00 3.42
298 299 1.153147 GTTGCCTGGGTAGCTAGCC 60.153 63.158 31.01 31.01 43.95 3.93
299 300 2.375345 TTGCCTGGGTAGCTAGCCC 61.375 63.158 33.42 25.75 46.26 5.19
300 301 2.446802 GCCTGGGTAGCTAGCCCT 60.447 66.667 33.42 0.00 46.22 5.19
301 302 1.152312 GCCTGGGTAGCTAGCCCTA 60.152 63.158 33.42 18.56 46.22 3.53
302 303 1.188871 GCCTGGGTAGCTAGCCCTAG 61.189 65.000 33.42 25.38 46.22 3.02
344 345 4.215742 CCCGCCTTGGCATGCATG 62.216 66.667 22.70 22.70 35.87 4.06
345 346 4.215742 CCGCCTTGGCATGCATGG 62.216 66.667 27.34 17.97 0.00 3.66
346 347 4.215742 CGCCTTGGCATGCATGGG 62.216 66.667 27.34 19.97 0.00 4.00
347 348 2.760799 GCCTTGGCATGCATGGGA 60.761 61.111 27.34 0.00 0.00 4.37
348 349 2.360767 GCCTTGGCATGCATGGGAA 61.361 57.895 27.34 2.77 0.00 3.97
349 350 1.692173 GCCTTGGCATGCATGGGAAT 61.692 55.000 27.34 0.00 0.00 3.01
350 351 0.105964 CCTTGGCATGCATGGGAATG 59.894 55.000 27.34 3.36 32.70 2.67
351 352 0.105964 CTTGGCATGCATGGGAATGG 59.894 55.000 27.34 0.91 29.93 3.16
352 353 1.338890 TTGGCATGCATGGGAATGGG 61.339 55.000 27.34 0.11 29.93 4.00
353 354 1.458020 GGCATGCATGGGAATGGGA 60.458 57.895 27.34 0.00 29.93 4.37
354 355 0.834687 GGCATGCATGGGAATGGGAT 60.835 55.000 27.34 0.00 29.93 3.85
355 356 0.320374 GCATGCATGGGAATGGGATG 59.680 55.000 27.34 0.00 34.03 3.51
356 357 0.973632 CATGCATGGGAATGGGATGG 59.026 55.000 19.40 0.00 0.00 3.51
357 358 0.178915 ATGCATGGGAATGGGATGGG 60.179 55.000 0.00 0.00 0.00 4.00
358 359 1.233949 GCATGGGAATGGGATGGGT 59.766 57.895 0.00 0.00 0.00 4.51
359 360 0.829182 GCATGGGAATGGGATGGGTC 60.829 60.000 0.00 0.00 0.00 4.46
360 361 0.557238 CATGGGAATGGGATGGGTCA 59.443 55.000 0.00 0.00 0.00 4.02
361 362 0.557729 ATGGGAATGGGATGGGTCAC 59.442 55.000 0.00 0.00 0.00 3.67
362 363 1.230212 GGGAATGGGATGGGTCACC 59.770 63.158 0.00 0.00 37.24 4.02
363 364 1.152963 GGAATGGGATGGGTCACCG 60.153 63.158 0.00 0.00 40.75 4.94
364 365 1.607612 GAATGGGATGGGTCACCGT 59.392 57.895 0.00 0.00 40.75 4.83
390 391 4.373116 CTACACGCGGTGGCTGGT 62.373 66.667 12.47 0.00 37.94 4.00
391 392 3.876589 CTACACGCGGTGGCTGGTT 62.877 63.158 12.47 0.00 37.94 3.67
395 396 4.988598 CGCGGTGGCTGGTTGTCT 62.989 66.667 0.00 0.00 36.88 3.41
396 397 3.357079 GCGGTGGCTGGTTGTCTG 61.357 66.667 0.00 0.00 35.83 3.51
397 398 2.669569 CGGTGGCTGGTTGTCTGG 60.670 66.667 0.00 0.00 0.00 3.86
398 399 2.985847 GGTGGCTGGTTGTCTGGC 60.986 66.667 0.00 0.00 39.69 4.85
399 400 2.113986 GTGGCTGGTTGTCTGGCT 59.886 61.111 0.00 0.00 39.90 4.75
400 401 2.113774 TGGCTGGTTGTCTGGCTG 59.886 61.111 0.00 0.00 39.90 4.85
401 402 2.113986 GGCTGGTTGTCTGGCTGT 59.886 61.111 0.00 0.00 37.02 4.40
402 403 1.529244 GGCTGGTTGTCTGGCTGTT 60.529 57.895 0.00 0.00 37.02 3.16
403 404 1.656441 GCTGGTTGTCTGGCTGTTG 59.344 57.895 0.00 0.00 0.00 3.33
404 405 1.799258 GCTGGTTGTCTGGCTGTTGG 61.799 60.000 0.00 0.00 0.00 3.77
405 406 0.179020 CTGGTTGTCTGGCTGTTGGA 60.179 55.000 0.00 0.00 0.00 3.53
406 407 0.465460 TGGTTGTCTGGCTGTTGGAC 60.465 55.000 0.00 0.00 0.00 4.02
407 408 1.172812 GGTTGTCTGGCTGTTGGACC 61.173 60.000 0.00 0.00 0.00 4.46
408 409 0.179018 GTTGTCTGGCTGTTGGACCT 60.179 55.000 0.00 0.00 0.00 3.85
409 410 0.108585 TTGTCTGGCTGTTGGACCTC 59.891 55.000 0.00 0.00 0.00 3.85
410 411 0.764369 TGTCTGGCTGTTGGACCTCT 60.764 55.000 0.00 0.00 0.00 3.69
411 412 0.036858 GTCTGGCTGTTGGACCTCTC 60.037 60.000 0.00 0.00 0.00 3.20
412 413 1.194781 TCTGGCTGTTGGACCTCTCC 61.195 60.000 0.00 0.00 37.04 3.71
413 414 2.266055 GGCTGTTGGACCTCTCCG 59.734 66.667 0.00 0.00 39.88 4.63
414 415 2.584391 GGCTGTTGGACCTCTCCGT 61.584 63.158 0.00 0.00 39.88 4.69
415 416 1.079750 GCTGTTGGACCTCTCCGTC 60.080 63.158 0.00 0.00 39.88 4.79
416 417 1.536943 GCTGTTGGACCTCTCCGTCT 61.537 60.000 0.00 0.00 39.88 4.18
417 418 0.528470 CTGTTGGACCTCTCCGTCTC 59.472 60.000 0.00 0.00 39.88 3.36
418 419 0.898789 TGTTGGACCTCTCCGTCTCC 60.899 60.000 0.00 0.00 39.88 3.71
419 420 0.898789 GTTGGACCTCTCCGTCTCCA 60.899 60.000 0.00 0.00 39.88 3.86
420 421 0.178944 TTGGACCTCTCCGTCTCCAA 60.179 55.000 0.00 0.00 39.88 3.53
421 422 0.612174 TGGACCTCTCCGTCTCCAAG 60.612 60.000 0.00 0.00 39.88 3.61
422 423 0.612453 GGACCTCTCCGTCTCCAAGT 60.612 60.000 0.00 0.00 33.07 3.16
423 424 0.528470 GACCTCTCCGTCTCCAAGTG 59.472 60.000 0.00 0.00 0.00 3.16
424 425 0.900647 ACCTCTCCGTCTCCAAGTGG 60.901 60.000 0.00 0.00 0.00 4.00
425 426 1.216710 CTCTCCGTCTCCAAGTGGC 59.783 63.158 0.00 0.00 34.44 5.01
426 427 1.228894 TCTCCGTCTCCAAGTGGCT 60.229 57.895 0.00 0.00 34.44 4.75
427 428 0.832135 TCTCCGTCTCCAAGTGGCTT 60.832 55.000 0.00 0.00 34.44 4.35
428 429 0.671781 CTCCGTCTCCAAGTGGCTTG 60.672 60.000 2.16 2.16 40.75 4.01
437 438 0.242017 CAAGTGGCTTGGCTTACTGC 59.758 55.000 1.23 0.00 37.77 4.40
438 439 0.111253 AAGTGGCTTGGCTTACTGCT 59.889 50.000 0.00 0.00 42.39 4.24
439 440 0.607489 AGTGGCTTGGCTTACTGCTG 60.607 55.000 0.00 0.00 42.39 4.41
440 441 0.606401 GTGGCTTGGCTTACTGCTGA 60.606 55.000 0.00 0.00 42.39 4.26
441 442 0.110295 TGGCTTGGCTTACTGCTGAA 59.890 50.000 0.00 0.00 42.39 3.02
442 443 1.272092 TGGCTTGGCTTACTGCTGAAT 60.272 47.619 0.00 0.00 42.39 2.57
443 444 1.403323 GGCTTGGCTTACTGCTGAATC 59.597 52.381 0.00 0.00 42.39 2.52
444 445 1.063174 GCTTGGCTTACTGCTGAATCG 59.937 52.381 0.00 0.00 42.39 3.34
445 446 1.667724 CTTGGCTTACTGCTGAATCGG 59.332 52.381 0.00 0.00 42.39 4.18
446 447 0.107703 TGGCTTACTGCTGAATCGGG 60.108 55.000 0.00 0.00 42.39 5.14
447 448 0.815615 GGCTTACTGCTGAATCGGGG 60.816 60.000 0.00 0.00 42.39 5.73
448 449 1.440145 GCTTACTGCTGAATCGGGGC 61.440 60.000 0.00 0.00 38.95 5.80
449 450 0.107703 CTTACTGCTGAATCGGGGCA 60.108 55.000 0.00 0.00 34.66 5.36
450 451 0.392461 TTACTGCTGAATCGGGGCAC 60.392 55.000 0.00 0.00 32.33 5.01
451 452 1.549243 TACTGCTGAATCGGGGCACA 61.549 55.000 0.00 0.00 32.33 4.57
452 453 1.675310 CTGCTGAATCGGGGCACAA 60.675 57.895 0.00 0.00 32.33 3.33
453 454 1.228398 TGCTGAATCGGGGCACAAA 60.228 52.632 0.00 0.00 0.00 2.83
454 455 1.243342 TGCTGAATCGGGGCACAAAG 61.243 55.000 0.00 0.00 0.00 2.77
455 456 1.508088 CTGAATCGGGGCACAAAGC 59.492 57.895 0.00 0.00 44.65 3.51
456 457 0.962356 CTGAATCGGGGCACAAAGCT 60.962 55.000 0.00 0.00 44.79 3.74
457 458 0.960364 TGAATCGGGGCACAAAGCTC 60.960 55.000 0.00 0.00 45.58 4.09
473 474 2.181954 GCTCATAGCTGGATCCAAGG 57.818 55.000 17.00 6.24 38.45 3.61
474 475 1.881498 GCTCATAGCTGGATCCAAGGC 60.881 57.143 17.00 16.64 38.45 4.35
475 476 1.419012 CTCATAGCTGGATCCAAGGCA 59.581 52.381 23.69 12.62 0.00 4.75
476 477 1.419012 TCATAGCTGGATCCAAGGCAG 59.581 52.381 23.69 14.68 0.00 4.85
477 478 1.142465 CATAGCTGGATCCAAGGCAGT 59.858 52.381 23.69 11.58 0.00 4.40
478 479 0.543277 TAGCTGGATCCAAGGCAGTG 59.457 55.000 23.69 9.25 0.00 3.66
479 480 2.413142 GCTGGATCCAAGGCAGTGC 61.413 63.158 17.00 6.55 0.00 4.40
480 481 1.302285 CTGGATCCAAGGCAGTGCT 59.698 57.895 17.00 0.00 0.00 4.40
481 482 0.323178 CTGGATCCAAGGCAGTGCTT 60.323 55.000 17.00 3.91 0.00 3.91
482 483 0.609957 TGGATCCAAGGCAGTGCTTG 60.610 55.000 13.46 16.03 0.00 4.01
483 484 0.322816 GGATCCAAGGCAGTGCTTGA 60.323 55.000 21.50 8.80 32.75 3.02
484 485 1.684248 GGATCCAAGGCAGTGCTTGAT 60.684 52.381 21.50 12.57 32.75 2.57
485 486 1.404391 GATCCAAGGCAGTGCTTGATG 59.596 52.381 21.50 9.64 32.75 3.07
486 487 0.401356 TCCAAGGCAGTGCTTGATGA 59.599 50.000 21.50 12.41 32.75 2.92
487 488 1.005097 TCCAAGGCAGTGCTTGATGAT 59.995 47.619 21.50 0.00 32.75 2.45
488 489 1.134367 CCAAGGCAGTGCTTGATGATG 59.866 52.381 21.50 8.41 32.75 3.07
489 490 1.134367 CAAGGCAGTGCTTGATGATGG 59.866 52.381 16.11 0.00 32.75 3.51
490 491 0.622136 AGGCAGTGCTTGATGATGGA 59.378 50.000 16.11 0.00 0.00 3.41
491 492 1.214673 AGGCAGTGCTTGATGATGGAT 59.785 47.619 16.11 0.00 0.00 3.41
492 493 1.337071 GGCAGTGCTTGATGATGGATG 59.663 52.381 16.11 0.00 0.00 3.51
493 494 1.269102 GCAGTGCTTGATGATGGATGC 60.269 52.381 8.18 0.00 0.00 3.91
494 495 1.002792 CAGTGCTTGATGATGGATGCG 60.003 52.381 0.00 0.00 0.00 4.73
495 496 1.134310 AGTGCTTGATGATGGATGCGA 60.134 47.619 0.00 0.00 0.00 5.10
496 497 1.672363 GTGCTTGATGATGGATGCGAA 59.328 47.619 0.00 0.00 0.00 4.70
497 498 1.944709 TGCTTGATGATGGATGCGAAG 59.055 47.619 0.00 0.00 0.00 3.79
498 499 1.266175 GCTTGATGATGGATGCGAAGG 59.734 52.381 0.00 0.00 0.00 3.46
499 500 2.842457 CTTGATGATGGATGCGAAGGA 58.158 47.619 0.00 0.00 0.00 3.36
500 501 2.538512 TGATGATGGATGCGAAGGAG 57.461 50.000 0.00 0.00 0.00 3.69
501 502 2.041701 TGATGATGGATGCGAAGGAGA 58.958 47.619 0.00 0.00 0.00 3.71
502 503 2.224137 TGATGATGGATGCGAAGGAGAC 60.224 50.000 0.00 0.00 0.00 3.36
503 504 1.194218 TGATGGATGCGAAGGAGACA 58.806 50.000 0.00 0.00 0.00 3.41
504 505 1.764723 TGATGGATGCGAAGGAGACAT 59.235 47.619 0.00 0.00 31.70 3.06
505 506 2.141517 GATGGATGCGAAGGAGACATG 58.858 52.381 0.00 0.00 29.51 3.21
506 507 0.462581 TGGATGCGAAGGAGACATGC 60.463 55.000 0.00 0.00 33.27 4.06
507 508 0.462581 GGATGCGAAGGAGACATGCA 60.463 55.000 0.00 0.00 38.14 3.96
508 509 0.654683 GATGCGAAGGAGACATGCAC 59.345 55.000 0.00 0.00 36.92 4.57
509 510 0.251354 ATGCGAAGGAGACATGCACT 59.749 50.000 0.00 0.00 36.92 4.40
510 511 0.671472 TGCGAAGGAGACATGCACTG 60.671 55.000 0.00 0.00 0.00 3.66
511 512 1.975363 GCGAAGGAGACATGCACTGC 61.975 60.000 0.00 0.00 0.00 4.40
512 513 0.390866 CGAAGGAGACATGCACTGCT 60.391 55.000 8.31 8.31 37.64 4.24
513 514 1.818642 GAAGGAGACATGCACTGCTT 58.181 50.000 20.73 20.73 45.72 3.91
514 515 1.467734 GAAGGAGACATGCACTGCTTG 59.532 52.381 23.85 13.89 43.78 4.01
515 516 0.322277 AGGAGACATGCACTGCTTGG 60.322 55.000 18.37 4.23 37.90 3.61
516 517 0.607489 GGAGACATGCACTGCTTGGT 60.607 55.000 18.37 7.08 37.90 3.67
517 518 1.242076 GAGACATGCACTGCTTGGTT 58.758 50.000 18.37 8.07 37.90 3.67
518 519 2.426522 GAGACATGCACTGCTTGGTTA 58.573 47.619 18.37 0.00 37.90 2.85
519 520 2.417933 GAGACATGCACTGCTTGGTTAG 59.582 50.000 18.37 0.00 37.90 2.34
520 521 2.154462 GACATGCACTGCTTGGTTAGT 58.846 47.619 18.37 0.35 37.90 2.24
521 522 2.554032 GACATGCACTGCTTGGTTAGTT 59.446 45.455 18.37 0.00 37.90 2.24
522 523 2.958355 ACATGCACTGCTTGGTTAGTTT 59.042 40.909 18.37 0.00 37.90 2.66
523 524 3.243501 ACATGCACTGCTTGGTTAGTTTG 60.244 43.478 18.37 0.00 37.90 2.93
524 525 1.066908 TGCACTGCTTGGTTAGTTTGC 59.933 47.619 1.98 0.00 0.00 3.68
525 526 1.338020 GCACTGCTTGGTTAGTTTGCT 59.662 47.619 0.00 0.00 0.00 3.91
526 527 2.552315 GCACTGCTTGGTTAGTTTGCTA 59.448 45.455 0.00 0.00 0.00 3.49
527 528 3.609409 GCACTGCTTGGTTAGTTTGCTAC 60.609 47.826 0.00 0.00 0.00 3.58
528 529 3.815401 CACTGCTTGGTTAGTTTGCTACT 59.185 43.478 0.00 0.00 41.04 2.57
529 530 3.815401 ACTGCTTGGTTAGTTTGCTACTG 59.185 43.478 2.79 0.00 37.73 2.74
530 531 3.146066 TGCTTGGTTAGTTTGCTACTGG 58.854 45.455 2.79 0.00 37.73 4.00
531 532 3.181449 TGCTTGGTTAGTTTGCTACTGGA 60.181 43.478 2.79 0.00 37.73 3.86
532 533 4.010349 GCTTGGTTAGTTTGCTACTGGAT 58.990 43.478 2.79 0.00 37.73 3.41
533 534 4.459337 GCTTGGTTAGTTTGCTACTGGATT 59.541 41.667 2.79 0.00 37.73 3.01
534 535 5.646360 GCTTGGTTAGTTTGCTACTGGATTA 59.354 40.000 2.79 0.00 37.73 1.75
535 536 6.150474 GCTTGGTTAGTTTGCTACTGGATTAA 59.850 38.462 2.79 0.00 37.73 1.40
536 537 7.626452 GCTTGGTTAGTTTGCTACTGGATTAAG 60.626 40.741 2.79 0.00 37.73 1.85
537 538 5.646360 TGGTTAGTTTGCTACTGGATTAAGC 59.354 40.000 2.79 0.00 37.73 3.09
538 539 5.880887 GGTTAGTTTGCTACTGGATTAAGCT 59.119 40.000 2.79 0.00 37.73 3.74
539 540 6.183360 GGTTAGTTTGCTACTGGATTAAGCTG 60.183 42.308 0.00 0.00 37.73 4.24
540 541 4.911390 AGTTTGCTACTGGATTAAGCTGT 58.089 39.130 0.00 0.00 37.16 4.40
541 542 5.316987 AGTTTGCTACTGGATTAAGCTGTT 58.683 37.500 0.00 0.00 37.16 3.16
542 543 6.472887 AGTTTGCTACTGGATTAAGCTGTTA 58.527 36.000 0.00 0.00 37.16 2.41
543 544 6.371825 AGTTTGCTACTGGATTAAGCTGTTAC 59.628 38.462 0.00 0.00 37.16 2.50
544 545 5.414789 TGCTACTGGATTAAGCTGTTACA 57.585 39.130 0.00 0.00 37.16 2.41
545 546 5.989477 TGCTACTGGATTAAGCTGTTACAT 58.011 37.500 0.00 0.00 37.16 2.29
546 547 5.817296 TGCTACTGGATTAAGCTGTTACATG 59.183 40.000 0.00 0.00 37.16 3.21
547 548 5.817816 GCTACTGGATTAAGCTGTTACATGT 59.182 40.000 2.69 2.69 33.40 3.21
548 549 6.984474 GCTACTGGATTAAGCTGTTACATGTA 59.016 38.462 0.08 0.08 33.40 2.29
549 550 7.042658 GCTACTGGATTAAGCTGTTACATGTAC 60.043 40.741 4.68 1.95 33.40 2.90
550 551 6.707290 ACTGGATTAAGCTGTTACATGTACA 58.293 36.000 4.68 0.00 0.00 2.90
551 552 6.594159 ACTGGATTAAGCTGTTACATGTACAC 59.406 38.462 4.68 7.97 0.00 2.90
552 553 6.468543 TGGATTAAGCTGTTACATGTACACA 58.531 36.000 4.68 11.85 0.00 3.72
553 554 6.937465 TGGATTAAGCTGTTACATGTACACAA 59.063 34.615 4.68 0.00 0.00 3.33
554 555 7.119116 TGGATTAAGCTGTTACATGTACACAAG 59.881 37.037 4.68 2.33 0.00 3.16
555 556 7.333423 GGATTAAGCTGTTACATGTACACAAGA 59.667 37.037 4.68 0.00 0.00 3.02
556 557 7.652300 TTAAGCTGTTACATGTACACAAGAG 57.348 36.000 4.68 1.94 0.00 2.85
557 558 5.215252 AGCTGTTACATGTACACAAGAGT 57.785 39.130 4.68 0.00 0.00 3.24
558 559 6.340962 AGCTGTTACATGTACACAAGAGTA 57.659 37.500 4.68 0.00 0.00 2.59
559 560 6.936279 AGCTGTTACATGTACACAAGAGTAT 58.064 36.000 4.68 0.00 0.00 2.12
560 561 7.386851 AGCTGTTACATGTACACAAGAGTATT 58.613 34.615 4.68 0.00 0.00 1.89
561 562 8.528643 AGCTGTTACATGTACACAAGAGTATTA 58.471 33.333 4.68 0.00 0.00 0.98
562 563 9.314321 GCTGTTACATGTACACAAGAGTATTAT 57.686 33.333 4.68 0.00 0.00 1.28
575 576 9.766277 CACAAGAGTATTATTTTTCTCTGAAGC 57.234 33.333 0.00 0.00 37.35 3.86
576 577 9.732130 ACAAGAGTATTATTTTTCTCTGAAGCT 57.268 29.630 0.00 0.00 37.35 3.74
577 578 9.985318 CAAGAGTATTATTTTTCTCTGAAGCTG 57.015 33.333 0.00 0.00 37.35 4.24
578 579 8.729805 AGAGTATTATTTTTCTCTGAAGCTGG 57.270 34.615 0.00 0.00 36.17 4.85
579 580 7.772757 AGAGTATTATTTTTCTCTGAAGCTGGG 59.227 37.037 0.00 0.00 36.17 4.45
580 581 5.588958 ATTATTTTTCTCTGAAGCTGGGC 57.411 39.130 0.00 0.00 0.00 5.36
581 582 1.238439 TTTTTCTCTGAAGCTGGGCG 58.762 50.000 0.00 0.00 0.00 6.13
582 583 0.606401 TTTTCTCTGAAGCTGGGCGG 60.606 55.000 0.00 0.00 0.00 6.13
583 584 2.469465 TTTCTCTGAAGCTGGGCGGG 62.469 60.000 0.00 0.00 0.00 6.13
600 601 2.661537 GCCACGGCCTTGTTTTGC 60.662 61.111 8.63 0.29 34.56 3.68
601 602 2.028925 CCACGGCCTTGTTTTGCC 59.971 61.111 8.63 0.00 44.41 4.52
602 603 2.028925 CACGGCCTTGTTTTGCCC 59.971 61.111 0.00 0.00 45.07 5.36
603 604 2.123468 ACGGCCTTGTTTTGCCCT 60.123 55.556 0.00 0.00 45.07 5.19
604 605 2.200337 ACGGCCTTGTTTTGCCCTC 61.200 57.895 0.00 0.00 45.07 4.30
605 606 2.199652 CGGCCTTGTTTTGCCCTCA 61.200 57.895 0.00 0.00 45.07 3.86
606 607 1.743321 CGGCCTTGTTTTGCCCTCAA 61.743 55.000 0.00 0.00 45.07 3.02
607 608 0.033920 GGCCTTGTTTTGCCCTCAAG 59.966 55.000 0.00 0.00 41.97 3.02
608 609 1.039856 GCCTTGTTTTGCCCTCAAGA 58.960 50.000 5.83 0.00 40.35 3.02
609 610 1.412343 GCCTTGTTTTGCCCTCAAGAA 59.588 47.619 5.83 0.00 40.35 2.52
610 611 2.546584 GCCTTGTTTTGCCCTCAAGAAG 60.547 50.000 5.83 0.00 40.35 2.85
611 612 2.546584 CCTTGTTTTGCCCTCAAGAAGC 60.547 50.000 5.83 0.00 40.35 3.86
612 613 2.071778 TGTTTTGCCCTCAAGAAGCT 57.928 45.000 0.00 0.00 33.12 3.74
613 614 1.956477 TGTTTTGCCCTCAAGAAGCTC 59.044 47.619 0.00 0.00 33.12 4.09
614 615 1.270826 GTTTTGCCCTCAAGAAGCTCC 59.729 52.381 0.00 0.00 33.12 4.70
615 616 0.606401 TTTGCCCTCAAGAAGCTCCG 60.606 55.000 0.00 0.00 33.12 4.63
616 617 2.821810 GCCCTCAAGAAGCTCCGC 60.822 66.667 0.00 0.00 0.00 5.54
617 618 2.124942 CCCTCAAGAAGCTCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
618 619 2.665000 CCTCAAGAAGCTCCGCCA 59.335 61.111 0.00 0.00 0.00 5.69
619 620 1.449246 CCTCAAGAAGCTCCGCCAG 60.449 63.158 0.00 0.00 0.00 4.85
620 621 1.294780 CTCAAGAAGCTCCGCCAGT 59.705 57.895 0.00 0.00 0.00 4.00
621 622 1.004560 TCAAGAAGCTCCGCCAGTG 60.005 57.895 0.00 0.00 0.00 3.66
661 666 9.778741 CTTCCTAACAGTAATATAAATGAGGCA 57.221 33.333 0.00 0.00 0.00 4.75
662 667 9.778741 TTCCTAACAGTAATATAAATGAGGCAG 57.221 33.333 0.00 0.00 0.00 4.85
663 668 8.375506 TCCTAACAGTAATATAAATGAGGCAGG 58.624 37.037 0.00 0.00 0.00 4.85
664 669 6.884280 AACAGTAATATAAATGAGGCAGGC 57.116 37.500 0.00 0.00 0.00 4.85
671 676 2.512692 AAATGAGGCAGGCACATACA 57.487 45.000 7.34 0.00 0.00 2.29
680 685 3.056607 GGCAGGCACATACAAAAACTGAT 60.057 43.478 0.00 0.00 0.00 2.90
711 716 6.080648 TCATTGCTTCAATTGGATCTATGC 57.919 37.500 5.42 0.00 31.05 3.14
747 758 7.306399 GCTTTTCTTTGCGATATTCAATCCATG 60.306 37.037 0.00 0.00 0.00 3.66
752 766 7.701924 TCTTTGCGATATTCAATCCATGTTTTC 59.298 33.333 0.00 0.00 0.00 2.29
753 767 6.698008 TGCGATATTCAATCCATGTTTTCT 57.302 33.333 0.00 0.00 0.00 2.52
775 792 8.915871 TTCTTAATTACTGCAATTGCTTCATC 57.084 30.769 29.37 1.74 42.66 2.92
795 817 3.410508 TCCAAATTGGCATTTGCTTTCC 58.589 40.909 7.24 0.00 45.63 3.13
804 842 3.248363 GGCATTTGCTTTCCTGTTGTTTC 59.752 43.478 2.12 0.00 41.70 2.78
841 879 1.669795 CCGAGCCTTTCAAATGTTGCC 60.670 52.381 0.00 0.00 0.00 4.52
853 891 6.214191 TCAAATGTTGCCACTCTTTTACAA 57.786 33.333 0.00 0.00 0.00 2.41
854 892 6.815089 TCAAATGTTGCCACTCTTTTACAAT 58.185 32.000 0.00 0.00 0.00 2.71
938 989 2.612972 TCCTTACAGGAGCTTTTCAGCG 60.613 50.000 0.00 0.00 40.06 5.18
1003 1055 0.950836 CACCGTTTGAGGCACAATGA 59.049 50.000 0.00 0.00 38.36 2.57
1050 1102 0.616111 TCTCTCTGCTCCTGTTCCCC 60.616 60.000 0.00 0.00 0.00 4.81
1056 1108 2.224159 GCTCCTGTTCCCCAGTGGA 61.224 63.158 11.95 0.00 43.18 4.02
1345 1402 4.377021 TGGAGTTATGACAATGATACCGC 58.623 43.478 0.00 0.00 0.00 5.68
1427 1484 6.888105 TCAGTGCTCCACAATTTCTCATATA 58.112 36.000 0.00 0.00 36.74 0.86
1571 1628 0.956633 CTGTGGCAGCACTTGTTGAT 59.043 50.000 0.00 0.00 0.00 2.57
1659 1716 3.273434 GCTTTGGATGATGCACTCACTA 58.727 45.455 0.00 0.00 36.48 2.74
1679 1736 6.148645 TCACTATAAAGCGTTGCAAAATCTCA 59.851 34.615 0.00 0.00 0.00 3.27
1832 1889 3.387374 TGGCAAACCAACTGAACATGATT 59.613 39.130 0.00 0.00 45.37 2.57
1874 1931 1.301244 AACTGACTGGCTGTCTGCG 60.301 57.895 24.31 15.53 45.01 5.18
1963 2031 2.689983 GGCCACATATTCCCAACTCAAG 59.310 50.000 0.00 0.00 0.00 3.02
2137 3142 6.150140 AGGATTTCCTTTTCAAATGACTCGAG 59.850 38.462 11.84 11.84 46.09 4.04
2312 3329 7.361799 CCTGCATATGACATCATAAACCTCATG 60.362 40.741 6.97 0.92 41.60 3.07
2360 3377 7.875554 GGTTTTTGGTCAAATTATTCTGGCTTA 59.124 33.333 0.00 0.00 0.00 3.09
2489 3506 2.373836 TCGAGGATGGGTTTTTCCTTCA 59.626 45.455 0.00 0.00 42.48 3.02
2833 3883 2.380084 TTACAATGAGCCGGACAGTC 57.620 50.000 5.05 0.00 0.00 3.51
3251 4587 5.128991 ACTCTACCTATAGACCTGTTTTGCC 59.871 44.000 0.00 0.00 33.66 4.52
3281 4645 5.400703 GTCCTACTTAGCTGTATATTCGCC 58.599 45.833 0.00 0.00 0.00 5.54
3291 4655 9.750125 TTAGCTGTATATTCGCCTAATGATATG 57.250 33.333 0.00 0.00 0.00 1.78
3351 4739 6.364701 TGTATTGCCAAATGCTCTTATAGGT 58.635 36.000 0.00 0.00 42.00 3.08
3464 4860 9.668497 GTGAGTAAACCAACCTTCTCTATTATT 57.332 33.333 0.00 0.00 0.00 1.40
3621 5036 9.277783 GTTTTGATCATTGTATCCAGCTATACT 57.722 33.333 0.00 0.00 34.13 2.12
3624 5039 6.212187 TGATCATTGTATCCAGCTATACTGCT 59.788 38.462 7.89 0.00 45.78 4.24
3795 5210 1.601419 TACGAGCTCTTGGTTCCCCG 61.601 60.000 12.85 0.00 0.00 5.73
3953 5368 4.047883 AGAGGATGGGGCTTTGTAAGTAT 58.952 43.478 0.00 0.00 0.00 2.12
4029 5605 6.826741 TGGTATTAAAATCCTGGACTAACAGC 59.173 38.462 0.00 0.00 37.16 4.40
4030 5606 7.054751 GGTATTAAAATCCTGGACTAACAGCT 58.945 38.462 0.00 0.00 37.16 4.24
4031 5607 7.556635 GGTATTAAAATCCTGGACTAACAGCTT 59.443 37.037 0.00 0.00 37.16 3.74
4032 5608 8.957466 GTATTAAAATCCTGGACTAACAGCTTT 58.043 33.333 0.00 0.00 37.16 3.51
4034 5610 8.927675 TTAAAATCCTGGACTAACAGCTTTAA 57.072 30.769 0.00 0.00 37.16 1.52
4035 5611 9.528489 TTAAAATCCTGGACTAACAGCTTTAAT 57.472 29.630 0.00 0.00 37.16 1.40
4036 5612 8.422577 AAAATCCTGGACTAACAGCTTTAATT 57.577 30.769 0.00 0.00 37.16 1.40
4037 5613 8.422577 AAATCCTGGACTAACAGCTTTAATTT 57.577 30.769 0.00 0.00 37.16 1.82
4038 5614 8.422577 AATCCTGGACTAACAGCTTTAATTTT 57.577 30.769 0.00 0.00 37.16 1.82
4039 5615 7.214467 TCCTGGACTAACAGCTTTAATTTTG 57.786 36.000 0.00 0.00 37.16 2.44
4040 5616 7.001674 TCCTGGACTAACAGCTTTAATTTTGA 58.998 34.615 0.00 0.00 37.16 2.69
4041 5617 7.504238 TCCTGGACTAACAGCTTTAATTTTGAA 59.496 33.333 0.00 0.00 37.16 2.69
4042 5618 8.306761 CCTGGACTAACAGCTTTAATTTTGAAT 58.693 33.333 0.00 0.00 37.16 2.57
4049 5625 8.728088 AACAGCTTTAATTTTGAATAGTCGTG 57.272 30.769 0.00 0.00 0.00 4.35
4050 5626 7.871853 ACAGCTTTAATTTTGAATAGTCGTGT 58.128 30.769 0.00 0.00 0.00 4.49
4051 5627 8.015658 ACAGCTTTAATTTTGAATAGTCGTGTC 58.984 33.333 0.00 0.00 0.00 3.67
4052 5628 8.230486 CAGCTTTAATTTTGAATAGTCGTGTCT 58.770 33.333 0.00 0.00 0.00 3.41
4053 5629 9.431887 AGCTTTAATTTTGAATAGTCGTGTCTA 57.568 29.630 0.00 0.00 0.00 2.59
4054 5630 9.474249 GCTTTAATTTTGAATAGTCGTGTCTAC 57.526 33.333 0.00 0.00 0.00 2.59
4094 5703 1.034838 TCCTTGCACTTGTTTGCGGT 61.035 50.000 0.00 0.00 46.20 5.68
4416 6027 4.389077 GGTATCATGCTACGCAAATACCTC 59.611 45.833 22.97 9.09 46.33 3.85
4455 6066 3.244181 GGAGCCTCAGAAGATTCATCTCC 60.244 52.174 0.00 0.00 35.76 3.71
4619 6230 5.289595 CGCTATTGACATGGAAAGCTAGTA 58.710 41.667 0.00 0.00 0.00 1.82
4703 6320 3.908103 ACAACACTGGGGTCAACTACTAT 59.092 43.478 0.00 0.00 0.00 2.12
5129 6932 2.158943 GCTTATCTTAGGGTGGTCGCTT 60.159 50.000 0.00 0.00 37.93 4.68
5153 6956 5.127845 TGAAAAATGTGTTAGCACCTTCCAA 59.872 36.000 7.29 0.00 44.65 3.53
5168 6972 5.180304 CACCTTCCAAAGCTCTAAAGAAGAC 59.820 44.000 11.39 0.00 34.07 3.01
5575 7624 5.104527 ACAGTTATGCTAGCTACATTGGGAA 60.105 40.000 17.23 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.634910 GTGGTCCTTAACTGAAAGCCAAA 59.365 43.478 0.00 0.00 37.60 3.28
19 20 7.937649 AGTAAAGAAACAATGTGGTCCTTAAC 58.062 34.615 0.00 0.00 0.00 2.01
22 23 7.342026 AGAAAGTAAAGAAACAATGTGGTCCTT 59.658 33.333 0.00 0.00 0.00 3.36
35 36 7.346751 ACAAGCATCCAAGAAAGTAAAGAAA 57.653 32.000 0.00 0.00 0.00 2.52
36 37 6.293407 CGACAAGCATCCAAGAAAGTAAAGAA 60.293 38.462 0.00 0.00 0.00 2.52
65 66 0.038166 GCCACTGGATCCAAGGTTGA 59.962 55.000 25.86 0.72 0.00 3.18
66 67 1.308069 CGCCACTGGATCCAAGGTTG 61.308 60.000 25.86 18.05 0.00 3.77
68 69 2.671070 CGCCACTGGATCCAAGGT 59.329 61.111 25.86 15.70 0.00 3.50
69 70 2.124570 CCGCCACTGGATCCAAGG 60.125 66.667 22.83 22.83 0.00 3.61
70 71 1.153289 CTCCGCCACTGGATCCAAG 60.153 63.158 17.00 11.25 37.41 3.61
71 72 2.989639 CTCCGCCACTGGATCCAA 59.010 61.111 17.00 0.00 37.41 3.53
72 73 2.871795 TAGCTCCGCCACTGGATCCA 62.872 60.000 15.27 15.27 37.41 3.41
73 74 2.134287 TAGCTCCGCCACTGGATCC 61.134 63.158 4.20 4.20 37.41 3.36
74 75 1.068250 GTAGCTCCGCCACTGGATC 59.932 63.158 0.00 0.00 37.41 3.36
75 76 1.264749 TTGTAGCTCCGCCACTGGAT 61.265 55.000 0.00 0.00 37.41 3.41
76 77 1.911269 TTGTAGCTCCGCCACTGGA 60.911 57.895 0.00 0.00 36.37 3.86
77 78 1.741770 GTTGTAGCTCCGCCACTGG 60.742 63.158 0.00 0.00 0.00 4.00
126 127 9.152595 GCCTACTTAACTATATGGTTTAGCATC 57.847 37.037 15.37 2.60 31.53 3.91
127 128 8.656806 TGCCTACTTAACTATATGGTTTAGCAT 58.343 33.333 15.37 3.09 31.53 3.79
128 129 8.025270 TGCCTACTTAACTATATGGTTTAGCA 57.975 34.615 15.37 7.82 31.53 3.49
129 130 9.503399 AATGCCTACTTAACTATATGGTTTAGC 57.497 33.333 15.37 5.70 31.53 3.09
134 135 9.375974 TGACTAATGCCTACTTAACTATATGGT 57.624 33.333 0.00 0.00 0.00 3.55
135 136 9.862371 CTGACTAATGCCTACTTAACTATATGG 57.138 37.037 0.00 0.00 0.00 2.74
138 139 9.636789 TCACTGACTAATGCCTACTTAACTATA 57.363 33.333 0.00 0.00 0.00 1.31
139 140 8.534954 TCACTGACTAATGCCTACTTAACTAT 57.465 34.615 0.00 0.00 0.00 2.12
140 141 7.949690 TCACTGACTAATGCCTACTTAACTA 57.050 36.000 0.00 0.00 0.00 2.24
141 142 6.852420 TCACTGACTAATGCCTACTTAACT 57.148 37.500 0.00 0.00 0.00 2.24
142 143 7.900782 TTTCACTGACTAATGCCTACTTAAC 57.099 36.000 0.00 0.00 0.00 2.01
143 144 9.515226 AAATTTCACTGACTAATGCCTACTTAA 57.485 29.630 0.00 0.00 0.00 1.85
144 145 9.162764 GAAATTTCACTGACTAATGCCTACTTA 57.837 33.333 13.40 0.00 0.00 2.24
145 146 7.665559 TGAAATTTCACTGACTAATGCCTACTT 59.334 33.333 16.91 0.00 31.01 2.24
146 147 7.168219 TGAAATTTCACTGACTAATGCCTACT 58.832 34.615 16.91 0.00 31.01 2.57
147 148 7.377766 TGAAATTTCACTGACTAATGCCTAC 57.622 36.000 16.91 0.00 31.01 3.18
148 149 6.599244 CCTGAAATTTCACTGACTAATGCCTA 59.401 38.462 16.91 0.00 32.90 3.93
149 150 5.416952 CCTGAAATTTCACTGACTAATGCCT 59.583 40.000 16.91 0.00 32.90 4.75
150 151 5.183904 ACCTGAAATTTCACTGACTAATGCC 59.816 40.000 16.91 0.00 32.90 4.40
151 152 6.259550 ACCTGAAATTTCACTGACTAATGC 57.740 37.500 16.91 0.00 32.90 3.56
152 153 6.583806 GCAACCTGAAATTTCACTGACTAATG 59.416 38.462 16.91 4.28 32.90 1.90
153 154 6.491403 AGCAACCTGAAATTTCACTGACTAAT 59.509 34.615 16.91 0.00 32.90 1.73
154 155 5.827797 AGCAACCTGAAATTTCACTGACTAA 59.172 36.000 16.91 0.00 32.90 2.24
155 156 5.239306 CAGCAACCTGAAATTTCACTGACTA 59.761 40.000 22.16 1.96 41.77 2.59
156 157 4.037208 CAGCAACCTGAAATTTCACTGACT 59.963 41.667 22.16 14.97 41.77 3.41
157 158 4.202050 ACAGCAACCTGAAATTTCACTGAC 60.202 41.667 28.61 17.05 41.77 3.51
158 159 3.953612 ACAGCAACCTGAAATTTCACTGA 59.046 39.130 28.61 8.67 41.77 3.41
159 160 4.311816 ACAGCAACCTGAAATTTCACTG 57.688 40.909 23.75 23.75 41.77 3.66
160 161 6.375455 CCTATACAGCAACCTGAAATTTCACT 59.625 38.462 16.91 9.34 41.77 3.41
161 162 6.404734 CCCTATACAGCAACCTGAAATTTCAC 60.405 42.308 16.91 7.16 41.77 3.18
162 163 5.652014 CCCTATACAGCAACCTGAAATTTCA 59.348 40.000 19.45 19.45 41.77 2.69
163 164 5.885912 TCCCTATACAGCAACCTGAAATTTC 59.114 40.000 11.41 11.41 41.77 2.17
164 165 5.826643 TCCCTATACAGCAACCTGAAATTT 58.173 37.500 0.00 0.00 41.77 1.82
165 166 5.450818 TCCCTATACAGCAACCTGAAATT 57.549 39.130 0.00 0.00 41.77 1.82
166 167 5.450818 TTCCCTATACAGCAACCTGAAAT 57.549 39.130 0.00 0.00 41.77 2.17
167 168 4.919774 TTCCCTATACAGCAACCTGAAA 57.080 40.909 0.00 0.00 41.77 2.69
168 169 4.288626 AGTTTCCCTATACAGCAACCTGAA 59.711 41.667 0.00 0.00 41.77 3.02
169 170 3.844211 AGTTTCCCTATACAGCAACCTGA 59.156 43.478 0.00 0.00 41.77 3.86
170 171 3.941483 CAGTTTCCCTATACAGCAACCTG 59.059 47.826 0.00 0.00 44.80 4.00
171 172 3.054361 CCAGTTTCCCTATACAGCAACCT 60.054 47.826 0.00 0.00 0.00 3.50
172 173 3.279434 CCAGTTTCCCTATACAGCAACC 58.721 50.000 0.00 0.00 0.00 3.77
173 174 3.951663 ACCAGTTTCCCTATACAGCAAC 58.048 45.455 0.00 0.00 0.00 4.17
174 175 5.452776 CGATACCAGTTTCCCTATACAGCAA 60.453 44.000 0.00 0.00 0.00 3.91
175 176 4.038763 CGATACCAGTTTCCCTATACAGCA 59.961 45.833 0.00 0.00 0.00 4.41
176 177 4.280174 TCGATACCAGTTTCCCTATACAGC 59.720 45.833 0.00 0.00 0.00 4.40
177 178 5.768662 TCTCGATACCAGTTTCCCTATACAG 59.231 44.000 0.00 0.00 0.00 2.74
178 179 5.698104 TCTCGATACCAGTTTCCCTATACA 58.302 41.667 0.00 0.00 0.00 2.29
179 180 6.433404 TCATCTCGATACCAGTTTCCCTATAC 59.567 42.308 0.00 0.00 0.00 1.47
180 181 6.549242 TCATCTCGATACCAGTTTCCCTATA 58.451 40.000 0.00 0.00 0.00 1.31
181 182 5.394738 TCATCTCGATACCAGTTTCCCTAT 58.605 41.667 0.00 0.00 0.00 2.57
182 183 4.800023 TCATCTCGATACCAGTTTCCCTA 58.200 43.478 0.00 0.00 0.00 3.53
183 184 3.643237 TCATCTCGATACCAGTTTCCCT 58.357 45.455 0.00 0.00 0.00 4.20
184 185 4.202264 ACATCATCTCGATACCAGTTTCCC 60.202 45.833 0.00 0.00 31.20 3.97
185 186 4.950050 ACATCATCTCGATACCAGTTTCC 58.050 43.478 0.00 0.00 31.20 3.13
186 187 5.812642 ACAACATCATCTCGATACCAGTTTC 59.187 40.000 0.00 0.00 31.20 2.78
187 188 5.734720 ACAACATCATCTCGATACCAGTTT 58.265 37.500 0.00 0.00 31.20 2.66
188 189 5.105351 TGACAACATCATCTCGATACCAGTT 60.105 40.000 0.00 0.00 31.20 3.16
189 190 4.402474 TGACAACATCATCTCGATACCAGT 59.598 41.667 0.00 0.00 31.20 4.00
190 191 4.936891 TGACAACATCATCTCGATACCAG 58.063 43.478 0.00 0.00 31.20 4.00
191 192 5.105351 ACTTGACAACATCATCTCGATACCA 60.105 40.000 0.00 0.00 37.11 3.25
192 193 5.352284 ACTTGACAACATCATCTCGATACC 58.648 41.667 0.00 0.00 37.11 2.73
193 194 7.987268 TTACTTGACAACATCATCTCGATAC 57.013 36.000 0.00 0.00 37.11 2.24
194 195 8.996024 TTTTACTTGACAACATCATCTCGATA 57.004 30.769 0.00 0.00 37.11 2.92
195 196 7.905604 TTTTACTTGACAACATCATCTCGAT 57.094 32.000 0.00 0.00 37.11 3.59
196 197 7.905604 ATTTTACTTGACAACATCATCTCGA 57.094 32.000 0.00 0.00 37.11 4.04
197 198 8.843733 CAAATTTTACTTGACAACATCATCTCG 58.156 33.333 0.00 0.00 37.11 4.04
198 199 9.897744 TCAAATTTTACTTGACAACATCATCTC 57.102 29.630 0.00 0.00 37.11 2.75
229 230 6.458888 GCTAGCGCATAAGAAATTTCCTTTCT 60.459 38.462 11.47 5.99 44.60 2.52
230 231 5.683302 GCTAGCGCATAAGAAATTTCCTTTC 59.317 40.000 11.47 0.56 38.83 2.62
231 232 5.358160 AGCTAGCGCATAAGAAATTTCCTTT 59.642 36.000 11.47 6.27 39.10 3.11
232 233 4.884164 AGCTAGCGCATAAGAAATTTCCTT 59.116 37.500 11.47 10.49 39.10 3.36
233 234 4.274459 CAGCTAGCGCATAAGAAATTTCCT 59.726 41.667 11.47 4.47 39.10 3.36
234 235 4.531332 CAGCTAGCGCATAAGAAATTTCC 58.469 43.478 11.47 0.00 39.10 3.13
235 236 3.971240 GCAGCTAGCGCATAAGAAATTTC 59.029 43.478 21.32 10.33 39.10 2.17
236 237 3.957468 GCAGCTAGCGCATAAGAAATTT 58.043 40.909 21.32 0.00 39.10 1.82
237 238 3.615849 GCAGCTAGCGCATAAGAAATT 57.384 42.857 21.32 0.00 39.10 1.82
249 250 2.630580 ACCATAGAACTAGGCAGCTAGC 59.369 50.000 6.62 6.62 44.65 3.42
250 251 4.148838 AGACCATAGAACTAGGCAGCTAG 58.851 47.826 0.00 0.00 0.00 3.42
251 252 4.186077 AGACCATAGAACTAGGCAGCTA 57.814 45.455 0.00 0.00 0.00 3.32
252 253 3.039252 AGACCATAGAACTAGGCAGCT 57.961 47.619 0.00 0.00 0.00 4.24
253 254 3.118592 ACAAGACCATAGAACTAGGCAGC 60.119 47.826 0.00 0.00 0.00 5.25
254 255 4.437239 CACAAGACCATAGAACTAGGCAG 58.563 47.826 0.00 0.00 0.00 4.85
255 256 3.369471 GCACAAGACCATAGAACTAGGCA 60.369 47.826 0.00 0.00 0.00 4.75
256 257 3.118592 AGCACAAGACCATAGAACTAGGC 60.119 47.826 0.00 0.00 0.00 3.93
257 258 4.688021 GAGCACAAGACCATAGAACTAGG 58.312 47.826 0.00 0.00 0.00 3.02
258 259 4.142359 ACGAGCACAAGACCATAGAACTAG 60.142 45.833 0.00 0.00 0.00 2.57
259 260 3.762288 ACGAGCACAAGACCATAGAACTA 59.238 43.478 0.00 0.00 0.00 2.24
260 261 2.563179 ACGAGCACAAGACCATAGAACT 59.437 45.455 0.00 0.00 0.00 3.01
261 262 2.960819 ACGAGCACAAGACCATAGAAC 58.039 47.619 0.00 0.00 0.00 3.01
262 263 3.325870 CAACGAGCACAAGACCATAGAA 58.674 45.455 0.00 0.00 0.00 2.10
263 264 2.930887 GCAACGAGCACAAGACCATAGA 60.931 50.000 0.00 0.00 44.79 1.98
264 265 1.394917 GCAACGAGCACAAGACCATAG 59.605 52.381 0.00 0.00 44.79 2.23
265 266 1.438651 GCAACGAGCACAAGACCATA 58.561 50.000 0.00 0.00 44.79 2.74
266 267 2.247790 GCAACGAGCACAAGACCAT 58.752 52.632 0.00 0.00 44.79 3.55
267 268 3.731136 GCAACGAGCACAAGACCA 58.269 55.556 0.00 0.00 44.79 4.02
276 277 1.956629 TAGCTACCCAGGCAACGAGC 61.957 60.000 0.00 0.00 46.39 5.03
277 278 0.103208 CTAGCTACCCAGGCAACGAG 59.897 60.000 0.00 0.00 46.39 4.18
278 279 1.956629 GCTAGCTACCCAGGCAACGA 61.957 60.000 7.70 0.00 46.39 3.85
279 280 1.521681 GCTAGCTACCCAGGCAACG 60.522 63.158 7.70 0.00 46.39 4.10
280 281 1.153147 GGCTAGCTACCCAGGCAAC 60.153 63.158 15.72 0.00 37.30 4.17
281 282 3.320359 GGCTAGCTACCCAGGCAA 58.680 61.111 15.72 0.00 37.30 4.52
293 294 4.306967 GCCAGCGGCTAGGGCTAG 62.307 72.222 20.64 0.00 46.69 3.42
327 328 4.215742 CATGCATGCCAAGGCGGG 62.216 66.667 14.93 2.02 45.51 6.13
328 329 4.215742 CCATGCATGCCAAGGCGG 62.216 66.667 21.69 0.67 45.51 6.13
329 330 4.215742 CCCATGCATGCCAAGGCG 62.216 66.667 21.69 5.54 45.51 5.52
330 331 1.692173 ATTCCCATGCATGCCAAGGC 61.692 55.000 21.69 3.61 42.35 4.35
331 332 0.105964 CATTCCCATGCATGCCAAGG 59.894 55.000 21.69 16.38 32.06 3.61
332 333 0.105964 CCATTCCCATGCATGCCAAG 59.894 55.000 21.69 7.42 0.00 3.61
333 334 1.338890 CCCATTCCCATGCATGCCAA 61.339 55.000 21.69 15.11 0.00 4.52
334 335 1.762858 CCCATTCCCATGCATGCCA 60.763 57.895 21.69 6.44 0.00 4.92
335 336 0.834687 ATCCCATTCCCATGCATGCC 60.835 55.000 21.69 0.00 0.00 4.40
336 337 0.320374 CATCCCATTCCCATGCATGC 59.680 55.000 21.69 11.82 0.00 4.06
337 338 0.973632 CCATCCCATTCCCATGCATG 59.026 55.000 20.19 20.19 0.00 4.06
338 339 0.178915 CCCATCCCATTCCCATGCAT 60.179 55.000 0.00 0.00 0.00 3.96
339 340 1.233659 CCCATCCCATTCCCATGCA 59.766 57.895 0.00 0.00 0.00 3.96
340 341 0.829182 GACCCATCCCATTCCCATGC 60.829 60.000 0.00 0.00 0.00 4.06
341 342 0.557238 TGACCCATCCCATTCCCATG 59.443 55.000 0.00 0.00 0.00 3.66
342 343 0.557729 GTGACCCATCCCATTCCCAT 59.442 55.000 0.00 0.00 0.00 4.00
343 344 1.580066 GGTGACCCATCCCATTCCCA 61.580 60.000 0.00 0.00 0.00 4.37
344 345 1.230212 GGTGACCCATCCCATTCCC 59.770 63.158 0.00 0.00 0.00 3.97
345 346 1.152963 CGGTGACCCATCCCATTCC 60.153 63.158 0.00 0.00 0.00 3.01
346 347 0.463833 GACGGTGACCCATCCCATTC 60.464 60.000 0.00 0.00 0.00 2.67
347 348 1.607612 GACGGTGACCCATCCCATT 59.392 57.895 0.00 0.00 0.00 3.16
348 349 2.731571 CGACGGTGACCCATCCCAT 61.732 63.158 0.00 0.00 0.00 4.00
349 350 3.387091 CGACGGTGACCCATCCCA 61.387 66.667 0.00 0.00 0.00 4.37
350 351 4.157120 CCGACGGTGACCCATCCC 62.157 72.222 5.48 0.00 0.00 3.85
351 352 4.832608 GCCGACGGTGACCCATCC 62.833 72.222 16.73 0.00 0.00 3.51
373 374 3.876589 AACCAGCCACCGCGTGTAG 62.877 63.158 4.92 0.00 41.18 2.74
374 375 3.931247 AACCAGCCACCGCGTGTA 61.931 61.111 4.92 0.00 41.18 2.90
378 379 4.988598 AGACAACCAGCCACCGCG 62.989 66.667 0.00 0.00 41.18 6.46
379 380 3.357079 CAGACAACCAGCCACCGC 61.357 66.667 0.00 0.00 0.00 5.68
380 381 2.669569 CCAGACAACCAGCCACCG 60.670 66.667 0.00 0.00 0.00 4.94
381 382 2.985847 GCCAGACAACCAGCCACC 60.986 66.667 0.00 0.00 0.00 4.61
382 383 2.113986 AGCCAGACAACCAGCCAC 59.886 61.111 0.00 0.00 0.00 5.01
383 384 2.113774 CAGCCAGACAACCAGCCA 59.886 61.111 0.00 0.00 0.00 4.75
384 385 1.529244 AACAGCCAGACAACCAGCC 60.529 57.895 0.00 0.00 0.00 4.85
385 386 1.656441 CAACAGCCAGACAACCAGC 59.344 57.895 0.00 0.00 0.00 4.85
386 387 0.179020 TCCAACAGCCAGACAACCAG 60.179 55.000 0.00 0.00 0.00 4.00
387 388 0.465460 GTCCAACAGCCAGACAACCA 60.465 55.000 0.00 0.00 0.00 3.67
388 389 1.172812 GGTCCAACAGCCAGACAACC 61.173 60.000 0.00 0.00 31.99 3.77
389 390 0.179018 AGGTCCAACAGCCAGACAAC 60.179 55.000 0.00 0.00 31.99 3.32
390 391 0.108585 GAGGTCCAACAGCCAGACAA 59.891 55.000 0.00 0.00 31.99 3.18
391 392 0.764369 AGAGGTCCAACAGCCAGACA 60.764 55.000 0.00 0.00 31.99 3.41
392 393 0.036858 GAGAGGTCCAACAGCCAGAC 60.037 60.000 0.00 0.00 0.00 3.51
393 394 1.194781 GGAGAGGTCCAACAGCCAGA 61.195 60.000 0.00 0.00 43.31 3.86
394 395 1.298014 GGAGAGGTCCAACAGCCAG 59.702 63.158 0.00 0.00 43.31 4.85
395 396 2.583441 CGGAGAGGTCCAACAGCCA 61.583 63.158 0.00 0.00 44.18 4.75
396 397 2.266055 CGGAGAGGTCCAACAGCC 59.734 66.667 0.00 0.00 44.18 4.85
397 398 1.079750 GACGGAGAGGTCCAACAGC 60.080 63.158 0.00 0.00 44.18 4.40
398 399 0.528470 GAGACGGAGAGGTCCAACAG 59.472 60.000 0.00 0.00 44.18 3.16
399 400 0.898789 GGAGACGGAGAGGTCCAACA 60.899 60.000 0.00 0.00 44.18 3.33
400 401 0.898789 TGGAGACGGAGAGGTCCAAC 60.899 60.000 0.00 0.00 44.18 3.77
401 402 0.178944 TTGGAGACGGAGAGGTCCAA 60.179 55.000 0.00 0.00 44.18 3.53
402 403 0.612174 CTTGGAGACGGAGAGGTCCA 60.612 60.000 0.00 0.00 44.18 4.02
403 404 0.612453 ACTTGGAGACGGAGAGGTCC 60.612 60.000 0.00 0.00 37.66 4.46
404 405 0.528470 CACTTGGAGACGGAGAGGTC 59.472 60.000 0.00 0.00 37.19 3.85
405 406 0.900647 CCACTTGGAGACGGAGAGGT 60.901 60.000 0.00 0.00 37.39 3.85
406 407 1.893786 CCACTTGGAGACGGAGAGG 59.106 63.158 0.00 0.00 37.39 3.69
407 408 1.216710 GCCACTTGGAGACGGAGAG 59.783 63.158 0.00 0.00 37.39 3.20
408 409 0.832135 AAGCCACTTGGAGACGGAGA 60.832 55.000 0.00 0.00 37.39 3.71
409 410 0.671781 CAAGCCACTTGGAGACGGAG 60.672 60.000 0.00 0.00 37.77 4.63
410 411 1.371183 CAAGCCACTTGGAGACGGA 59.629 57.895 0.00 0.00 37.77 4.69
411 412 3.972227 CAAGCCACTTGGAGACGG 58.028 61.111 0.00 0.00 37.77 4.79
418 419 0.242017 GCAGTAAGCCAAGCCACTTG 59.758 55.000 0.24 0.24 40.75 3.16
419 420 2.646121 GCAGTAAGCCAAGCCACTT 58.354 52.632 0.00 0.00 37.23 3.16
420 421 4.404691 GCAGTAAGCCAAGCCACT 57.595 55.556 0.00 0.00 37.23 4.00
429 430 1.440145 GCCCCGATTCAGCAGTAAGC 61.440 60.000 0.00 0.00 46.19 3.09
430 431 0.107703 TGCCCCGATTCAGCAGTAAG 60.108 55.000 0.00 0.00 31.65 2.34
431 432 0.392461 GTGCCCCGATTCAGCAGTAA 60.392 55.000 0.00 0.00 37.15 2.24
432 433 1.220749 GTGCCCCGATTCAGCAGTA 59.779 57.895 0.00 0.00 37.15 2.74
433 434 2.045926 GTGCCCCGATTCAGCAGT 60.046 61.111 0.00 0.00 37.15 4.40
434 435 1.243342 TTTGTGCCCCGATTCAGCAG 61.243 55.000 0.00 0.00 37.15 4.24
435 436 1.228398 TTTGTGCCCCGATTCAGCA 60.228 52.632 0.00 0.00 0.00 4.41
436 437 1.508088 CTTTGTGCCCCGATTCAGC 59.492 57.895 0.00 0.00 0.00 4.26
437 438 0.962356 AGCTTTGTGCCCCGATTCAG 60.962 55.000 0.00 0.00 44.23 3.02
438 439 0.960364 GAGCTTTGTGCCCCGATTCA 60.960 55.000 0.00 0.00 44.23 2.57
439 440 0.960364 TGAGCTTTGTGCCCCGATTC 60.960 55.000 0.00 0.00 44.23 2.52
440 441 0.323725 ATGAGCTTTGTGCCCCGATT 60.324 50.000 0.00 0.00 44.23 3.34
441 442 0.546122 TATGAGCTTTGTGCCCCGAT 59.454 50.000 0.00 0.00 44.23 4.18
442 443 0.107703 CTATGAGCTTTGTGCCCCGA 60.108 55.000 0.00 0.00 44.23 5.14
443 444 1.718757 GCTATGAGCTTTGTGCCCCG 61.719 60.000 0.00 0.00 44.23 5.73
444 445 2.110296 GCTATGAGCTTTGTGCCCC 58.890 57.895 0.00 0.00 44.23 5.80
454 455 1.881498 GCCTTGGATCCAGCTATGAGC 60.881 57.143 15.53 7.61 42.84 4.26
455 456 1.419012 TGCCTTGGATCCAGCTATGAG 59.581 52.381 22.52 13.30 0.00 2.90
456 457 1.419012 CTGCCTTGGATCCAGCTATGA 59.581 52.381 22.52 4.64 0.00 2.15
457 458 1.142465 ACTGCCTTGGATCCAGCTATG 59.858 52.381 22.52 15.79 0.00 2.23
458 459 1.142465 CACTGCCTTGGATCCAGCTAT 59.858 52.381 22.52 10.85 0.00 2.97
459 460 0.543277 CACTGCCTTGGATCCAGCTA 59.457 55.000 22.52 6.04 0.00 3.32
460 461 1.302285 CACTGCCTTGGATCCAGCT 59.698 57.895 22.52 5.01 0.00 4.24
461 462 2.413142 GCACTGCCTTGGATCCAGC 61.413 63.158 15.53 16.41 0.00 4.85
462 463 0.323178 AAGCACTGCCTTGGATCCAG 60.323 55.000 15.53 5.51 0.00 3.86
463 464 0.609957 CAAGCACTGCCTTGGATCCA 60.610 55.000 11.44 11.44 38.78 3.41
464 465 0.322816 TCAAGCACTGCCTTGGATCC 60.323 55.000 4.20 4.20 41.89 3.36
465 466 1.404391 CATCAAGCACTGCCTTGGATC 59.596 52.381 0.00 0.00 41.89 3.36
466 467 1.005097 TCATCAAGCACTGCCTTGGAT 59.995 47.619 0.00 0.00 41.89 3.41
467 468 0.401356 TCATCAAGCACTGCCTTGGA 59.599 50.000 0.00 0.00 41.89 3.53
468 469 1.134367 CATCATCAAGCACTGCCTTGG 59.866 52.381 0.00 0.00 41.89 3.61
469 470 1.134367 CCATCATCAAGCACTGCCTTG 59.866 52.381 0.00 2.51 42.73 3.61
470 471 1.005097 TCCATCATCAAGCACTGCCTT 59.995 47.619 0.00 0.00 0.00 4.35
471 472 0.622136 TCCATCATCAAGCACTGCCT 59.378 50.000 0.00 0.00 0.00 4.75
472 473 1.337071 CATCCATCATCAAGCACTGCC 59.663 52.381 0.00 0.00 0.00 4.85
473 474 1.269102 GCATCCATCATCAAGCACTGC 60.269 52.381 0.00 0.00 0.00 4.40
474 475 1.002792 CGCATCCATCATCAAGCACTG 60.003 52.381 0.00 0.00 0.00 3.66
475 476 1.134310 TCGCATCCATCATCAAGCACT 60.134 47.619 0.00 0.00 0.00 4.40
476 477 1.302366 TCGCATCCATCATCAAGCAC 58.698 50.000 0.00 0.00 0.00 4.40
477 478 1.944709 CTTCGCATCCATCATCAAGCA 59.055 47.619 0.00 0.00 0.00 3.91
478 479 1.266175 CCTTCGCATCCATCATCAAGC 59.734 52.381 0.00 0.00 0.00 4.01
479 480 2.806818 CTCCTTCGCATCCATCATCAAG 59.193 50.000 0.00 0.00 0.00 3.02
480 481 2.435437 TCTCCTTCGCATCCATCATCAA 59.565 45.455 0.00 0.00 0.00 2.57
481 482 2.041701 TCTCCTTCGCATCCATCATCA 58.958 47.619 0.00 0.00 0.00 3.07
482 483 2.224137 TGTCTCCTTCGCATCCATCATC 60.224 50.000 0.00 0.00 0.00 2.92
483 484 1.764723 TGTCTCCTTCGCATCCATCAT 59.235 47.619 0.00 0.00 0.00 2.45
484 485 1.194218 TGTCTCCTTCGCATCCATCA 58.806 50.000 0.00 0.00 0.00 3.07
485 486 2.141517 CATGTCTCCTTCGCATCCATC 58.858 52.381 0.00 0.00 0.00 3.51
486 487 1.813092 GCATGTCTCCTTCGCATCCAT 60.813 52.381 0.00 0.00 0.00 3.41
487 488 0.462581 GCATGTCTCCTTCGCATCCA 60.463 55.000 0.00 0.00 0.00 3.41
488 489 0.462581 TGCATGTCTCCTTCGCATCC 60.463 55.000 0.00 0.00 0.00 3.51
489 490 0.654683 GTGCATGTCTCCTTCGCATC 59.345 55.000 0.00 0.00 34.66 3.91
490 491 0.251354 AGTGCATGTCTCCTTCGCAT 59.749 50.000 0.00 0.00 34.66 4.73
491 492 0.671472 CAGTGCATGTCTCCTTCGCA 60.671 55.000 0.00 0.00 0.00 5.10
492 493 1.975363 GCAGTGCATGTCTCCTTCGC 61.975 60.000 11.09 0.00 0.00 4.70
493 494 0.390866 AGCAGTGCATGTCTCCTTCG 60.391 55.000 19.20 0.00 0.00 3.79
494 495 1.467734 CAAGCAGTGCATGTCTCCTTC 59.532 52.381 19.20 0.00 0.00 3.46
495 496 1.531423 CAAGCAGTGCATGTCTCCTT 58.469 50.000 19.20 0.00 0.00 3.36
496 497 0.322277 CCAAGCAGTGCATGTCTCCT 60.322 55.000 19.20 0.00 0.00 3.69
497 498 0.607489 ACCAAGCAGTGCATGTCTCC 60.607 55.000 19.20 0.00 0.00 3.71
498 499 1.242076 AACCAAGCAGTGCATGTCTC 58.758 50.000 19.20 0.00 0.00 3.36
499 500 2.224621 ACTAACCAAGCAGTGCATGTCT 60.225 45.455 19.20 7.23 0.00 3.41
500 501 2.154462 ACTAACCAAGCAGTGCATGTC 58.846 47.619 19.20 0.00 0.00 3.06
501 502 2.276732 ACTAACCAAGCAGTGCATGT 57.723 45.000 19.20 8.14 0.00 3.21
502 503 3.311106 CAAACTAACCAAGCAGTGCATG 58.689 45.455 19.20 16.11 0.00 4.06
503 504 2.288395 GCAAACTAACCAAGCAGTGCAT 60.288 45.455 19.20 1.20 32.50 3.96
504 505 1.066908 GCAAACTAACCAAGCAGTGCA 59.933 47.619 19.20 0.00 32.50 4.57
505 506 1.338020 AGCAAACTAACCAAGCAGTGC 59.662 47.619 7.13 7.13 32.42 4.40
506 507 3.815401 AGTAGCAAACTAACCAAGCAGTG 59.185 43.478 0.00 0.00 36.36 3.66
507 508 3.815401 CAGTAGCAAACTAACCAAGCAGT 59.185 43.478 0.00 0.00 35.76 4.40
508 509 3.189287 CCAGTAGCAAACTAACCAAGCAG 59.811 47.826 0.00 0.00 35.76 4.24
509 510 3.146066 CCAGTAGCAAACTAACCAAGCA 58.854 45.455 0.00 0.00 35.76 3.91
510 511 3.408634 TCCAGTAGCAAACTAACCAAGC 58.591 45.455 0.00 0.00 35.76 4.01
511 512 7.626452 GCTTAATCCAGTAGCAAACTAACCAAG 60.626 40.741 0.00 0.00 35.76 3.61
512 513 6.150474 GCTTAATCCAGTAGCAAACTAACCAA 59.850 38.462 0.00 0.00 35.76 3.67
513 514 5.646360 GCTTAATCCAGTAGCAAACTAACCA 59.354 40.000 0.00 0.00 35.76 3.67
514 515 5.880887 AGCTTAATCCAGTAGCAAACTAACC 59.119 40.000 0.00 0.00 35.76 2.85
515 516 6.371825 ACAGCTTAATCCAGTAGCAAACTAAC 59.628 38.462 0.00 0.00 35.76 2.34
516 517 6.472887 ACAGCTTAATCCAGTAGCAAACTAA 58.527 36.000 0.00 0.00 35.76 2.24
517 518 6.049955 ACAGCTTAATCCAGTAGCAAACTA 57.950 37.500 0.00 0.00 35.76 2.24
518 519 4.911390 ACAGCTTAATCCAGTAGCAAACT 58.089 39.130 0.00 0.00 39.81 2.66
519 520 5.629079 AACAGCTTAATCCAGTAGCAAAC 57.371 39.130 0.00 0.00 37.37 2.93
520 521 6.234920 TGTAACAGCTTAATCCAGTAGCAAA 58.765 36.000 0.00 0.00 37.37 3.68
521 522 5.800296 TGTAACAGCTTAATCCAGTAGCAA 58.200 37.500 0.00 0.00 37.37 3.91
522 523 5.414789 TGTAACAGCTTAATCCAGTAGCA 57.585 39.130 0.00 0.00 37.37 3.49
523 524 5.817816 ACATGTAACAGCTTAATCCAGTAGC 59.182 40.000 0.00 0.00 35.16 3.58
524 525 7.979537 TGTACATGTAACAGCTTAATCCAGTAG 59.020 37.037 7.25 0.00 0.00 2.57
525 526 7.762615 GTGTACATGTAACAGCTTAATCCAGTA 59.237 37.037 7.25 0.00 0.00 2.74
526 527 6.594159 GTGTACATGTAACAGCTTAATCCAGT 59.406 38.462 7.25 0.00 0.00 4.00
527 528 6.593770 TGTGTACATGTAACAGCTTAATCCAG 59.406 38.462 7.25 0.00 0.00 3.86
528 529 6.468543 TGTGTACATGTAACAGCTTAATCCA 58.531 36.000 7.25 0.00 0.00 3.41
529 530 6.978343 TGTGTACATGTAACAGCTTAATCC 57.022 37.500 7.25 0.00 0.00 3.01
530 531 8.251750 TCTTGTGTACATGTAACAGCTTAATC 57.748 34.615 7.25 0.00 0.00 1.75
531 532 7.878127 ACTCTTGTGTACATGTAACAGCTTAAT 59.122 33.333 7.25 0.00 0.00 1.40
532 533 7.214381 ACTCTTGTGTACATGTAACAGCTTAA 58.786 34.615 7.25 0.00 0.00 1.85
533 534 6.755206 ACTCTTGTGTACATGTAACAGCTTA 58.245 36.000 7.25 0.00 0.00 3.09
534 535 5.611374 ACTCTTGTGTACATGTAACAGCTT 58.389 37.500 7.25 0.00 0.00 3.74
535 536 5.215252 ACTCTTGTGTACATGTAACAGCT 57.785 39.130 7.25 0.00 0.00 4.24
536 537 7.596749 AATACTCTTGTGTACATGTAACAGC 57.403 36.000 7.25 0.00 0.00 4.40
549 550 9.766277 GCTTCAGAGAAAAATAATACTCTTGTG 57.234 33.333 0.00 0.00 37.59 3.33
550 551 9.732130 AGCTTCAGAGAAAAATAATACTCTTGT 57.268 29.630 0.00 0.00 37.59 3.16
551 552 9.985318 CAGCTTCAGAGAAAAATAATACTCTTG 57.015 33.333 0.00 0.00 37.59 3.02
552 553 9.171877 CCAGCTTCAGAGAAAAATAATACTCTT 57.828 33.333 0.00 0.00 37.59 2.85
553 554 7.772757 CCCAGCTTCAGAGAAAAATAATACTCT 59.227 37.037 0.00 0.00 39.82 3.24
554 555 7.467947 GCCCAGCTTCAGAGAAAAATAATACTC 60.468 40.741 0.00 0.00 0.00 2.59
555 556 6.319911 GCCCAGCTTCAGAGAAAAATAATACT 59.680 38.462 0.00 0.00 0.00 2.12
556 557 6.499172 GCCCAGCTTCAGAGAAAAATAATAC 58.501 40.000 0.00 0.00 0.00 1.89
557 558 5.296780 CGCCCAGCTTCAGAGAAAAATAATA 59.703 40.000 0.00 0.00 0.00 0.98
558 559 4.096984 CGCCCAGCTTCAGAGAAAAATAAT 59.903 41.667 0.00 0.00 0.00 1.28
559 560 3.440173 CGCCCAGCTTCAGAGAAAAATAA 59.560 43.478 0.00 0.00 0.00 1.40
560 561 3.009723 CGCCCAGCTTCAGAGAAAAATA 58.990 45.455 0.00 0.00 0.00 1.40
561 562 1.815003 CGCCCAGCTTCAGAGAAAAAT 59.185 47.619 0.00 0.00 0.00 1.82
562 563 1.238439 CGCCCAGCTTCAGAGAAAAA 58.762 50.000 0.00 0.00 0.00 1.94
563 564 0.606401 CCGCCCAGCTTCAGAGAAAA 60.606 55.000 0.00 0.00 0.00 2.29
564 565 1.003355 CCGCCCAGCTTCAGAGAAA 60.003 57.895 0.00 0.00 0.00 2.52
565 566 2.665000 CCGCCCAGCTTCAGAGAA 59.335 61.111 0.00 0.00 0.00 2.87
566 567 3.393970 CCCGCCCAGCTTCAGAGA 61.394 66.667 0.00 0.00 0.00 3.10
583 584 2.661537 GCAAAACAAGGCCGTGGC 60.662 61.111 23.09 12.38 41.06 5.01
584 585 2.028925 GGCAAAACAAGGCCGTGG 59.971 61.111 23.09 6.71 40.93 4.94
589 590 1.039856 TCTTGAGGGCAAAACAAGGC 58.960 50.000 0.00 0.00 40.60 4.35
590 591 2.546584 GCTTCTTGAGGGCAAAACAAGG 60.547 50.000 0.00 0.00 40.60 3.61
591 592 2.363359 AGCTTCTTGAGGGCAAAACAAG 59.637 45.455 0.00 0.00 41.27 3.16
592 593 2.362077 GAGCTTCTTGAGGGCAAAACAA 59.638 45.455 0.00 0.00 32.73 2.83
593 594 1.956477 GAGCTTCTTGAGGGCAAAACA 59.044 47.619 0.00 0.00 32.73 2.83
594 595 1.270826 GGAGCTTCTTGAGGGCAAAAC 59.729 52.381 0.00 0.00 32.73 2.43
595 596 1.620822 GGAGCTTCTTGAGGGCAAAA 58.379 50.000 0.00 0.00 32.73 2.44
596 597 0.606401 CGGAGCTTCTTGAGGGCAAA 60.606 55.000 0.00 0.00 32.73 3.68
597 598 1.003355 CGGAGCTTCTTGAGGGCAA 60.003 57.895 0.00 0.00 0.00 4.52
598 599 2.665000 CGGAGCTTCTTGAGGGCA 59.335 61.111 0.00 0.00 0.00 5.36
611 612 1.817099 GATCCAAGCACTGGCGGAG 60.817 63.158 0.00 0.00 45.98 4.63
612 613 0.975556 TAGATCCAAGCACTGGCGGA 60.976 55.000 0.00 0.00 45.98 5.54
613 614 0.107456 ATAGATCCAAGCACTGGCGG 59.893 55.000 0.00 0.00 45.98 6.13
614 615 2.820059 TATAGATCCAAGCACTGGCG 57.180 50.000 0.00 0.00 45.98 5.69
615 616 4.550076 AGATATAGATCCAAGCACTGGC 57.450 45.455 0.00 0.00 45.98 4.85
617 618 6.357579 AGGAAGATATAGATCCAAGCACTG 57.642 41.667 0.00 0.00 31.81 3.66
618 619 7.510685 TGTTAGGAAGATATAGATCCAAGCACT 59.489 37.037 0.00 0.00 31.81 4.40
619 620 7.671302 TGTTAGGAAGATATAGATCCAAGCAC 58.329 38.462 0.00 0.00 31.81 4.40
620 621 7.510685 ACTGTTAGGAAGATATAGATCCAAGCA 59.489 37.037 0.00 0.31 31.81 3.91
621 622 7.902087 ACTGTTAGGAAGATATAGATCCAAGC 58.098 38.462 0.00 0.00 31.81 4.01
661 666 7.397192 AGGAAATATCAGTTTTTGTATGTGCCT 59.603 33.333 0.00 0.00 0.00 4.75
662 667 7.547227 AGGAAATATCAGTTTTTGTATGTGCC 58.453 34.615 0.00 0.00 0.00 5.01
663 668 8.986477 AAGGAAATATCAGTTTTTGTATGTGC 57.014 30.769 0.00 0.00 0.00 4.57
671 676 9.428097 GAAGCAATGAAGGAAATATCAGTTTTT 57.572 29.630 0.00 0.00 0.00 1.94
680 685 7.479352 TCCAATTGAAGCAATGAAGGAAATA 57.521 32.000 7.12 0.00 34.04 1.40
747 758 8.977505 TGAAGCAATTGCAGTAATTAAGAAAAC 58.022 29.630 30.89 4.49 45.16 2.43
752 766 7.259882 TGGATGAAGCAATTGCAGTAATTAAG 58.740 34.615 30.89 0.00 45.16 1.85
753 767 7.167924 TGGATGAAGCAATTGCAGTAATTAA 57.832 32.000 30.89 10.74 45.16 1.40
795 817 3.775661 ACGTTGAAAGGGAAACAACAG 57.224 42.857 0.00 0.00 42.37 3.16
804 842 1.671845 TCGGTCAAAACGTTGAAAGGG 59.328 47.619 0.00 0.00 45.29 3.95
867 905 9.616634 CATGATACCAATGCATAATTCTTGTAC 57.383 33.333 0.00 0.00 0.00 2.90
927 978 6.237915 GCAAATTATTTATGCGCTGAAAAGCT 60.238 34.615 9.73 0.00 0.00 3.74
929 980 7.225523 AGCAAATTATTTATGCGCTGAAAAG 57.774 32.000 9.73 0.00 44.60 2.27
938 989 8.482429 GTCTGCATGTTAGCAAATTATTTATGC 58.518 33.333 11.64 11.64 45.13 3.14
1003 1055 3.931578 ACAGCGTGAGAAAAGCTATCTT 58.068 40.909 3.67 0.00 42.17 2.40
1050 1102 3.057736 CCAAACTCTTGCAGATTCCACTG 60.058 47.826 0.00 0.00 40.43 3.66
1056 1108 1.271656 GCAGCCAAACTCTTGCAGATT 59.728 47.619 0.00 0.00 0.00 2.40
1224 1276 7.038799 AGGAAACCATCAAAGCAATTTGTATCT 60.039 33.333 0.00 0.00 33.82 1.98
1345 1402 4.460382 ACTGCAAACCTGATACAAGGAATG 59.540 41.667 0.00 0.00 40.02 2.67
1427 1484 7.521099 CGGAGCTCATTTGCTACATATGAAATT 60.521 37.037 17.19 0.00 43.82 1.82
1571 1628 7.632898 GCAGTCACTATCTTCCAGTGGTTATAA 60.633 40.741 9.54 0.00 42.98 0.98
1659 1716 6.851609 TGTATGAGATTTTGCAACGCTTTAT 58.148 32.000 0.00 0.00 0.00 1.40
1679 1736 5.319043 TGGAAGGAAAACTCACCTTGTAT 57.681 39.130 0.00 0.00 45.08 2.29
1832 1889 1.673993 CCACACATAGCCGTTGCCA 60.674 57.895 0.00 0.00 38.69 4.92
1963 2031 7.772757 ACTTGGAGATCAAATTACTCTTCATCC 59.227 37.037 0.00 0.00 34.56 3.51
2137 3142 1.503542 CCAGCTTCATCGTGCAACC 59.496 57.895 0.00 0.00 0.00 3.77
2312 3329 2.785425 GGTCCGCATGCCATTTCCC 61.785 63.158 13.15 0.00 0.00 3.97
2360 3377 1.004862 TCTGGAGAGATGGTCGACAGT 59.995 52.381 18.91 4.58 36.06 3.55
2489 3506 6.486320 CACCAATTTTTAACTCCTTGGCATTT 59.514 34.615 0.00 0.00 39.98 2.32
2833 3883 2.224281 TGGCTGGGTGAAATCTATAGCG 60.224 50.000 0.00 0.00 0.00 4.26
3251 4587 2.567615 ACAGCTAAGTAGGACCCACTTG 59.432 50.000 14.79 6.70 36.88 3.16
3291 4655 7.272948 GTGCAAAGACAGAAGAAAATCATCATC 59.727 37.037 0.00 0.00 0.00 2.92
3351 4739 5.300034 ACACATTTGAGAGCAAGAAATCACA 59.700 36.000 0.00 0.00 35.04 3.58
3501 4906 1.002366 GAAATCGTGAGTCATGCGCT 58.998 50.000 9.73 0.00 0.00 5.92
3621 5036 4.402793 GTCAGGATGGAAGTAAGACTAGCA 59.597 45.833 0.00 0.00 36.16 3.49
3624 5039 3.952323 CGGTCAGGATGGAAGTAAGACTA 59.048 47.826 0.00 0.00 36.16 2.59
3795 5210 0.308993 GGGCATCAGCGTATTCTTGC 59.691 55.000 0.00 0.00 43.41 4.01
4008 5583 9.528489 TTAAAGCTGTTAGTCCAGGATTTTAAT 57.472 29.630 0.00 0.00 32.92 1.40
4032 5608 9.784680 GAGAGTAGACACGACTATTCAAAATTA 57.215 33.333 0.00 0.00 33.52 1.40
4033 5609 8.524487 AGAGAGTAGACACGACTATTCAAAATT 58.476 33.333 0.00 0.00 33.52 1.82
4034 5610 8.057536 AGAGAGTAGACACGACTATTCAAAAT 57.942 34.615 0.00 0.00 33.52 1.82
4035 5611 7.450124 AGAGAGTAGACACGACTATTCAAAA 57.550 36.000 0.00 0.00 33.52 2.44
4036 5612 7.823310 ACTAGAGAGTAGACACGACTATTCAAA 59.177 37.037 0.00 0.00 33.52 2.69
4037 5613 7.329499 ACTAGAGAGTAGACACGACTATTCAA 58.671 38.462 0.00 0.00 33.52 2.69
4038 5614 6.876155 ACTAGAGAGTAGACACGACTATTCA 58.124 40.000 0.00 0.00 33.52 2.57
4039 5615 9.132521 GATACTAGAGAGTAGACACGACTATTC 57.867 40.741 0.00 0.00 41.50 1.75
4040 5616 8.640651 TGATACTAGAGAGTAGACACGACTATT 58.359 37.037 0.00 0.00 41.50 1.73
4041 5617 8.180706 TGATACTAGAGAGTAGACACGACTAT 57.819 38.462 0.00 0.00 41.50 2.12
4042 5618 7.579761 TGATACTAGAGAGTAGACACGACTA 57.420 40.000 0.00 0.00 41.50 2.59
4043 5619 6.468333 TGATACTAGAGAGTAGACACGACT 57.532 41.667 0.00 0.00 41.50 4.18
4044 5620 6.347079 GCATGATACTAGAGAGTAGACACGAC 60.347 46.154 0.00 0.00 41.50 4.34
4045 5621 5.697178 GCATGATACTAGAGAGTAGACACGA 59.303 44.000 0.00 0.00 41.50 4.35
4046 5622 5.467063 TGCATGATACTAGAGAGTAGACACG 59.533 44.000 0.00 0.00 41.50 4.49
4047 5623 6.869315 TGCATGATACTAGAGAGTAGACAC 57.131 41.667 0.00 0.00 41.50 3.67
4048 5624 7.057264 AGTTGCATGATACTAGAGAGTAGACA 58.943 38.462 0.00 0.00 41.50 3.41
4049 5625 7.504924 AGTTGCATGATACTAGAGAGTAGAC 57.495 40.000 0.00 0.00 41.50 2.59
4050 5626 8.526667 AAAGTTGCATGATACTAGAGAGTAGA 57.473 34.615 0.00 0.00 41.50 2.59
4051 5627 7.865385 GGAAAGTTGCATGATACTAGAGAGTAG 59.135 40.741 0.00 0.00 41.50 2.57
4052 5628 7.561722 AGGAAAGTTGCATGATACTAGAGAGTA 59.438 37.037 0.00 0.00 42.41 2.59
4053 5629 6.382570 AGGAAAGTTGCATGATACTAGAGAGT 59.617 38.462 0.00 0.00 39.92 3.24
4054 5630 6.815089 AGGAAAGTTGCATGATACTAGAGAG 58.185 40.000 0.00 0.00 0.00 3.20
4055 5631 6.798427 AGGAAAGTTGCATGATACTAGAGA 57.202 37.500 0.00 0.00 0.00 3.10
4056 5632 7.244166 CAAGGAAAGTTGCATGATACTAGAG 57.756 40.000 0.00 0.00 0.00 2.43
4094 5703 9.151471 GAGTACATGTAGATTTTAGACTTGCAA 57.849 33.333 5.62 0.00 0.00 4.08
4416 6027 2.831333 CTCCTCCTCGGATGATGTTTG 58.169 52.381 0.00 0.00 42.12 2.93
4455 6066 2.168521 TGGCTCCTTCTTATGGACGAAG 59.831 50.000 0.00 0.00 37.09 3.79
4619 6230 4.641396 TGCACTAGCTTTTGTACAGATGT 58.359 39.130 0.00 0.00 42.74 3.06
4703 6320 1.276989 CCAACCTAGGTTAGCGGAACA 59.723 52.381 26.66 0.00 40.09 3.18
5153 6956 8.153550 TCTCTTTCATTGTCTTCTTTAGAGCTT 58.846 33.333 0.00 0.00 32.23 3.74
5306 7282 2.789409 AACAAGTAGCTAGCTTGGGG 57.211 50.000 24.88 13.06 45.38 4.96
5575 7624 2.867109 AGTTACAGCAGAGTTGGCAT 57.133 45.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.