Multiple sequence alignment - TraesCS6A01G047700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G047700 chr6A 100.000 4781 0 0 1 4781 24063881 24068661 0.000000e+00 8829.0
1 TraesCS6A01G047700 chr6A 82.306 373 44 14 2022 2378 614566512 614566146 2.160000e-78 303.0
2 TraesCS6A01G047700 chr6D 89.578 1209 91 17 2867 4064 26244150 26245334 0.000000e+00 1502.0
3 TraesCS6A01G047700 chr6D 88.158 988 54 28 842 1770 26242026 26243009 0.000000e+00 1118.0
4 TraesCS6A01G047700 chr6D 88.676 574 46 14 1763 2325 26243073 26243638 0.000000e+00 682.0
5 TraesCS6A01G047700 chr6D 88.667 300 28 6 2529 2827 26243853 26244147 1.260000e-95 361.0
6 TraesCS6A01G047700 chr6D 90.037 271 20 5 4267 4536 26246011 26246275 1.270000e-90 344.0
7 TraesCS6A01G047700 chr6D 89.011 273 27 3 584 856 160794031 160793762 7.670000e-88 335.0
8 TraesCS6A01G047700 chr6D 89.734 263 26 1 585 847 388990621 388990882 7.670000e-88 335.0
9 TraesCS6A01G047700 chr6D 83.389 301 28 8 306 584 26241723 26242023 4.750000e-65 259.0
10 TraesCS6A01G047700 chr6D 91.525 177 15 0 4603 4779 26249702 26249878 1.330000e-60 244.0
11 TraesCS6A01G047700 chr6D 89.286 112 10 2 140 250 26241383 26241493 6.450000e-29 139.0
12 TraesCS6A01G047700 chr6D 93.878 49 2 1 2824 2872 8970253 8970300 6.640000e-09 73.1
13 TraesCS6A01G047700 chr6B 89.649 1169 97 17 2872 4026 42499451 42500609 0.000000e+00 1467.0
14 TraesCS6A01G047700 chr6B 86.115 677 53 22 1874 2537 42498347 42498995 0.000000e+00 691.0
15 TraesCS6A01G047700 chr6B 89.518 477 35 10 1296 1761 42497743 42498215 1.480000e-164 590.0
16 TraesCS6A01G047700 chr6B 89.535 430 19 3 885 1298 42497295 42497714 5.480000e-144 521.0
17 TraesCS6A01G047700 chr6B 89.273 289 27 2 2 289 42491423 42491708 4.550000e-95 359.0
18 TraesCS6A01G047700 chr6B 92.742 248 18 0 2529 2776 42499037 42499284 4.550000e-95 359.0
19 TraesCS6A01G047700 chr6B 82.574 373 43 14 2022 2378 32624522 32624156 4.650000e-80 309.0
20 TraesCS6A01G047700 chr6B 93.103 116 8 0 4666 4781 42505591 42505706 2.290000e-38 171.0
21 TraesCS6A01G047700 chr6B 95.349 43 2 0 1759 1801 42498242 42498284 8.590000e-08 69.4
22 TraesCS6A01G047700 chr3D 90.152 264 23 3 585 847 522508570 522508831 1.650000e-89 340.0
23 TraesCS6A01G047700 chr3D 85.075 67 9 1 341 406 37771271 37771205 3.090000e-07 67.6
24 TraesCS6A01G047700 chr5A 89.219 269 27 2 579 846 550651092 550651359 7.670000e-88 335.0
25 TraesCS6A01G047700 chr5A 89.695 262 26 1 585 846 642209960 642209700 2.760000e-87 333.0
26 TraesCS6A01G047700 chr5A 96.094 128 5 0 4143 4270 46616188 46616315 4.850000e-50 209.0
27 TraesCS6A01G047700 chr5A 95.833 48 2 0 2824 2871 309680218 309680265 1.430000e-10 78.7
28 TraesCS6A01G047700 chr1D 89.011 273 26 4 586 857 473119043 473119312 7.670000e-88 335.0
29 TraesCS6A01G047700 chr1B 89.734 263 25 2 585 846 588156648 588156909 7.670000e-88 335.0
30 TraesCS6A01G047700 chr1B 95.833 48 2 0 2824 2871 608052524 608052477 1.430000e-10 78.7
31 TraesCS6A01G047700 chr1B 95.745 47 2 0 2824 2870 133188900 133188854 5.130000e-10 76.8
32 TraesCS6A01G047700 chr2D 89.434 265 27 1 584 848 169117217 169117480 2.760000e-87 333.0
33 TraesCS6A01G047700 chr2D 83.492 315 32 12 2066 2369 12103814 12103509 4.710000e-70 276.0
34 TraesCS6A01G047700 chr7B 89.139 267 27 2 585 850 201458068 201458333 9.920000e-87 331.0
35 TraesCS6A01G047700 chr7B 86.458 96 11 2 4676 4770 667320654 667320748 2.350000e-18 104.0
36 TraesCS6A01G047700 chr2A 83.784 370 38 14 2022 2375 20399595 20399958 9.920000e-87 331.0
37 TraesCS6A01G047700 chr2A 83.243 370 40 14 2022 2375 13528381 13528744 2.150000e-83 320.0
38 TraesCS6A01G047700 chr2A 83.110 373 41 14 2022 2378 20772534 20772168 2.150000e-83 320.0
39 TraesCS6A01G047700 chr4B 82.842 373 42 18 2022 2378 638998108 638997742 9.990000e-82 315.0
40 TraesCS6A01G047700 chr4B 95.745 47 2 0 2824 2870 142914439 142914485 5.130000e-10 76.8
41 TraesCS6A01G047700 chr3A 97.674 129 3 0 4142 4270 430794946 430795074 6.230000e-54 222.0
42 TraesCS6A01G047700 chr4A 96.124 129 5 0 4141 4269 200095982 200095854 1.350000e-50 211.0
43 TraesCS6A01G047700 chr5B 94.776 134 7 0 4142 4275 660144711 660144578 4.850000e-50 209.0
44 TraesCS6A01G047700 chr5B 87.273 165 18 1 4618 4779 536910893 536910729 8.170000e-43 185.0
45 TraesCS6A01G047700 chrUn 94.737 133 7 0 4140 4272 17025388 17025256 1.740000e-49 207.0
46 TraesCS6A01G047700 chrUn 94.737 133 7 0 4140 4272 17027621 17027489 1.740000e-49 207.0
47 TraesCS6A01G047700 chrUn 94.737 133 7 0 4140 4272 292131058 292131190 1.740000e-49 207.0
48 TraesCS6A01G047700 chrUn 94.737 133 7 0 4140 4272 302852128 302852260 1.740000e-49 207.0
49 TraesCS6A01G047700 chrUn 94.737 133 7 0 4140 4272 302859427 302859295 1.740000e-49 207.0
50 TraesCS6A01G047700 chr5D 85.185 162 21 2 4618 4779 441239198 441239040 3.830000e-36 163.0
51 TraesCS6A01G047700 chr7D 86.614 127 14 3 4647 4770 594024512 594024386 2.320000e-28 137.0
52 TraesCS6A01G047700 chr7D 86.614 127 14 2 4647 4770 594130607 594130733 2.320000e-28 137.0
53 TraesCS6A01G047700 chr7D 77.075 253 47 8 4275 4523 207608368 207608123 8.350000e-28 135.0
54 TraesCS6A01G047700 chr7D 79.470 151 25 6 4622 4770 593666683 593666537 8.460000e-18 102.0
55 TraesCS6A01G047700 chr7D 97.778 45 1 0 2824 2868 568370047 568370003 1.430000e-10 78.7
56 TraesCS6A01G047700 chr7A 94.231 52 3 0 2824 2875 195397843 195397792 3.970000e-11 80.5
57 TraesCS6A01G047700 chr2B 95.745 47 2 0 2824 2870 79295698 79295652 5.130000e-10 76.8
58 TraesCS6A01G047700 chr1A 92.308 52 4 0 2827 2878 58710003 58710054 1.850000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G047700 chr6A 24063881 24068661 4780 False 8829.000000 8829 100.000000 1 4781 1 chr6A.!!$F1 4780
1 TraesCS6A01G047700 chr6D 26241383 26249878 8495 False 581.125000 1502 88.664500 140 4779 8 chr6D.!!$F3 4639
2 TraesCS6A01G047700 chr6B 42497295 42500609 3314 False 616.233333 1467 90.484667 885 4026 6 chr6B.!!$F3 3141
3 TraesCS6A01G047700 chrUn 17025256 17027621 2365 True 207.000000 207 94.737000 4140 4272 2 chrUn.!!$R2 132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 574 0.179076 TGTGAGGTGGCATATGCGAG 60.179 55.0 21.04 0.00 43.26 5.03 F
1915 2284 0.179124 GAGTCAGCGAGCTTCGGATT 60.179 55.0 0.00 0.00 40.84 3.01 F
3003 3513 0.103572 TGTATAAAGGGCGCTCGTCC 59.896 55.0 7.64 4.52 40.91 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2698 0.399376 ACTATGGGGTATGGCCGTGA 60.399 55.0 8.05 0.00 38.44 4.35 R
3030 3540 0.107606 ACACGCCCAACACACTGTTA 60.108 50.0 0.00 0.00 38.77 2.41 R
4069 4598 0.164647 CACGCACAAGTTGAGCTAGC 59.835 55.0 20.67 6.62 31.68 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.112452 AGAAACTGTTGAATTTTGTTAGGCT 57.888 32.000 0.00 0.00 0.00 4.58
25 26 7.203218 AGAAACTGTTGAATTTTGTTAGGCTC 58.797 34.615 0.00 0.00 0.00 4.70
26 27 6.463995 AACTGTTGAATTTTGTTAGGCTCA 57.536 33.333 0.00 0.00 0.00 4.26
27 28 6.076981 ACTGTTGAATTTTGTTAGGCTCAG 57.923 37.500 0.00 0.00 0.00 3.35
28 29 5.827797 ACTGTTGAATTTTGTTAGGCTCAGA 59.172 36.000 0.00 0.00 0.00 3.27
29 30 6.016777 ACTGTTGAATTTTGTTAGGCTCAGAG 60.017 38.462 0.00 0.00 0.00 3.35
30 31 5.241506 TGTTGAATTTTGTTAGGCTCAGAGG 59.758 40.000 0.00 0.00 0.00 3.69
31 32 4.985538 TGAATTTTGTTAGGCTCAGAGGT 58.014 39.130 0.00 0.00 0.00 3.85
32 33 5.385198 TGAATTTTGTTAGGCTCAGAGGTT 58.615 37.500 0.00 0.00 0.00 3.50
33 34 5.833131 TGAATTTTGTTAGGCTCAGAGGTTT 59.167 36.000 0.00 0.00 0.00 3.27
34 35 6.323739 TGAATTTTGTTAGGCTCAGAGGTTTT 59.676 34.615 0.00 0.00 0.00 2.43
35 36 7.504238 TGAATTTTGTTAGGCTCAGAGGTTTTA 59.496 33.333 0.00 0.00 0.00 1.52
36 37 6.877611 TTTTGTTAGGCTCAGAGGTTTTAG 57.122 37.500 0.00 0.00 0.00 1.85
37 38 4.553330 TGTTAGGCTCAGAGGTTTTAGG 57.447 45.455 0.00 0.00 0.00 2.69
38 39 4.164981 TGTTAGGCTCAGAGGTTTTAGGA 58.835 43.478 0.00 0.00 0.00 2.94
39 40 4.595781 TGTTAGGCTCAGAGGTTTTAGGAA 59.404 41.667 0.00 0.00 0.00 3.36
40 41 5.250774 TGTTAGGCTCAGAGGTTTTAGGAAT 59.749 40.000 0.00 0.00 0.00 3.01
41 42 4.936685 AGGCTCAGAGGTTTTAGGAATT 57.063 40.909 0.00 0.00 0.00 2.17
42 43 7.037873 TGTTAGGCTCAGAGGTTTTAGGAATTA 60.038 37.037 0.00 0.00 0.00 1.40
43 44 6.388619 AGGCTCAGAGGTTTTAGGAATTAA 57.611 37.500 0.00 0.00 0.00 1.40
44 45 6.790319 AGGCTCAGAGGTTTTAGGAATTAAA 58.210 36.000 0.00 0.00 0.00 1.52
45 46 6.887002 AGGCTCAGAGGTTTTAGGAATTAAAG 59.113 38.462 0.00 0.00 33.03 1.85
46 47 6.659668 GGCTCAGAGGTTTTAGGAATTAAAGT 59.340 38.462 0.00 0.00 33.03 2.66
47 48 7.176865 GGCTCAGAGGTTTTAGGAATTAAAGTT 59.823 37.037 0.00 0.00 33.03 2.66
48 49 9.227777 GCTCAGAGGTTTTAGGAATTAAAGTTA 57.772 33.333 0.00 0.00 33.03 2.24
71 72 9.382244 GTTATAATTCCATAATTCAGTTGTCGC 57.618 33.333 0.00 0.00 36.67 5.19
72 73 5.895636 AATTCCATAATTCAGTTGTCGCA 57.104 34.783 0.00 0.00 28.88 5.10
73 74 4.678509 TTCCATAATTCAGTTGTCGCAC 57.321 40.909 0.00 0.00 0.00 5.34
74 75 3.669536 TCCATAATTCAGTTGTCGCACA 58.330 40.909 0.00 0.00 0.00 4.57
75 76 4.260985 TCCATAATTCAGTTGTCGCACAT 58.739 39.130 0.00 0.00 0.00 3.21
76 77 4.332543 TCCATAATTCAGTTGTCGCACATC 59.667 41.667 0.00 0.00 0.00 3.06
77 78 4.496341 CCATAATTCAGTTGTCGCACATCC 60.496 45.833 0.00 0.00 0.00 3.51
78 79 2.183478 ATTCAGTTGTCGCACATCCA 57.817 45.000 0.00 0.00 0.00 3.41
79 80 1.960417 TTCAGTTGTCGCACATCCAA 58.040 45.000 0.00 0.00 0.00 3.53
80 81 1.960417 TCAGTTGTCGCACATCCAAA 58.040 45.000 0.00 0.00 0.00 3.28
81 82 1.872952 TCAGTTGTCGCACATCCAAAG 59.127 47.619 0.00 0.00 0.00 2.77
82 83 1.603802 CAGTTGTCGCACATCCAAAGT 59.396 47.619 0.00 0.00 0.00 2.66
83 84 1.603802 AGTTGTCGCACATCCAAAGTG 59.396 47.619 0.00 0.00 39.92 3.16
89 90 2.343506 CACATCCAAAGTGCCAGCA 58.656 52.632 0.00 0.00 0.00 4.41
90 91 0.892755 CACATCCAAAGTGCCAGCAT 59.107 50.000 0.00 0.00 0.00 3.79
91 92 0.892755 ACATCCAAAGTGCCAGCATG 59.107 50.000 0.00 0.00 0.00 4.06
105 106 3.306917 CAGCATGGAAAGCATGAAACA 57.693 42.857 0.00 0.00 32.09 2.83
106 107 3.857052 CAGCATGGAAAGCATGAAACAT 58.143 40.909 0.00 0.00 32.09 2.71
107 108 3.616821 CAGCATGGAAAGCATGAAACATG 59.383 43.478 0.00 7.29 38.86 3.21
108 109 3.259876 AGCATGGAAAGCATGAAACATGT 59.740 39.130 12.27 0.00 38.29 3.21
109 110 3.998341 GCATGGAAAGCATGAAACATGTT 59.002 39.130 4.92 4.92 38.29 2.71
110 111 4.092383 GCATGGAAAGCATGAAACATGTTC 59.908 41.667 12.39 6.33 38.29 3.18
111 112 4.933505 TGGAAAGCATGAAACATGTTCA 57.066 36.364 12.39 11.81 0.00 3.18
112 113 5.471556 TGGAAAGCATGAAACATGTTCAT 57.528 34.783 12.39 13.49 39.53 2.57
113 114 6.587206 TGGAAAGCATGAAACATGTTCATA 57.413 33.333 12.39 1.66 37.06 2.15
114 115 6.990798 TGGAAAGCATGAAACATGTTCATAA 58.009 32.000 12.39 0.00 37.06 1.90
115 116 7.613585 TGGAAAGCATGAAACATGTTCATAAT 58.386 30.769 12.39 6.47 37.06 1.28
116 117 8.747471 TGGAAAGCATGAAACATGTTCATAATA 58.253 29.630 12.39 0.00 37.06 0.98
117 118 9.754382 GGAAAGCATGAAACATGTTCATAATAT 57.246 29.630 12.39 0.00 37.06 1.28
119 120 9.754382 AAAGCATGAAACATGTTCATAATATCC 57.246 29.630 12.39 3.44 37.06 2.59
120 121 8.701908 AGCATGAAACATGTTCATAATATCCT 57.298 30.769 12.39 0.00 37.06 3.24
121 122 8.790718 AGCATGAAACATGTTCATAATATCCTC 58.209 33.333 12.39 2.15 37.06 3.71
122 123 8.025445 GCATGAAACATGTTCATAATATCCTCC 58.975 37.037 12.39 0.00 37.06 4.30
123 124 9.293404 CATGAAACATGTTCATAATATCCTCCT 57.707 33.333 12.39 0.00 37.06 3.69
124 125 8.908786 TGAAACATGTTCATAATATCCTCCTC 57.091 34.615 12.39 0.97 0.00 3.71
125 126 8.717717 TGAAACATGTTCATAATATCCTCCTCT 58.282 33.333 12.39 0.00 0.00 3.69
126 127 9.566432 GAAACATGTTCATAATATCCTCCTCTT 57.434 33.333 12.39 0.00 0.00 2.85
132 133 8.577296 TGTTCATAATATCCTCCTCTTAACTCG 58.423 37.037 0.00 0.00 0.00 4.18
133 134 8.794553 GTTCATAATATCCTCCTCTTAACTCGA 58.205 37.037 0.00 0.00 0.00 4.04
134 135 9.535170 TTCATAATATCCTCCTCTTAACTCGAT 57.465 33.333 0.00 0.00 0.00 3.59
135 136 9.179909 TCATAATATCCTCCTCTTAACTCGATC 57.820 37.037 0.00 0.00 0.00 3.69
136 137 8.961634 CATAATATCCTCCTCTTAACTCGATCA 58.038 37.037 0.00 0.00 0.00 2.92
137 138 9.707957 ATAATATCCTCCTCTTAACTCGATCAT 57.292 33.333 0.00 0.00 0.00 2.45
138 139 5.720371 ATCCTCCTCTTAACTCGATCATG 57.280 43.478 0.00 0.00 0.00 3.07
153 154 9.436957 AACTCGATCATGTTTTCTACATAAACT 57.563 29.630 0.00 0.00 45.71 2.66
223 224 8.918202 TTACAAGTAGGTGTTCTGATGAAAAT 57.082 30.769 0.00 0.00 33.52 1.82
224 225 7.206981 ACAAGTAGGTGTTCTGATGAAAATG 57.793 36.000 0.00 0.00 33.52 2.32
232 233 8.900781 AGGTGTTCTGATGAAAATGAGATAATG 58.099 33.333 0.00 0.00 33.52 1.90
233 234 8.680903 GGTGTTCTGATGAAAATGAGATAATGT 58.319 33.333 0.00 0.00 33.52 2.71
236 237 8.896744 GTTCTGATGAAAATGAGATAATGTCCA 58.103 33.333 0.00 0.00 33.52 4.02
237 238 8.672823 TCTGATGAAAATGAGATAATGTCCAG 57.327 34.615 0.00 0.00 0.00 3.86
238 239 8.270030 TCTGATGAAAATGAGATAATGTCCAGT 58.730 33.333 0.00 0.00 0.00 4.00
240 241 8.048514 TGATGAAAATGAGATAATGTCCAGTGA 58.951 33.333 0.00 0.00 0.00 3.41
250 251 4.356405 AATGTCCAGTGAGTTGATGTGA 57.644 40.909 0.00 0.00 0.00 3.58
253 254 4.717877 TGTCCAGTGAGTTGATGTGAATT 58.282 39.130 0.00 0.00 0.00 2.17
255 256 5.593909 TGTCCAGTGAGTTGATGTGAATTTT 59.406 36.000 0.00 0.00 0.00 1.82
309 484 7.571080 AAAAAGTTTGTGGATGAATTTGCAT 57.429 28.000 0.00 0.00 0.00 3.96
311 486 3.998341 AGTTTGTGGATGAATTTGCATGC 59.002 39.130 11.82 11.82 37.16 4.06
313 488 0.925466 GTGGATGAATTTGCATGCGC 59.075 50.000 14.09 0.00 39.19 6.09
326 501 3.711086 TGCATGCGCTGAAAAGTAAAAA 58.289 36.364 14.09 0.00 39.64 1.94
329 504 4.143535 GCATGCGCTGAAAAGTAAAAAGTC 60.144 41.667 9.73 0.00 34.30 3.01
337 512 6.359883 GCTGAAAAGTAAAAAGTCGATTGGTC 59.640 38.462 0.00 0.00 0.00 4.02
338 513 7.562454 TGAAAAGTAAAAAGTCGATTGGTCT 57.438 32.000 0.00 0.00 0.00 3.85
343 518 6.231211 AGTAAAAAGTCGATTGGTCTGATGT 58.769 36.000 0.00 0.00 0.00 3.06
353 528 3.639672 TGGTCTGATGTGCTTGATGAT 57.360 42.857 0.00 0.00 0.00 2.45
398 573 0.469494 ATGTGAGGTGGCATATGCGA 59.531 50.000 21.04 15.19 43.26 5.10
399 574 0.179076 TGTGAGGTGGCATATGCGAG 60.179 55.000 21.04 0.00 43.26 5.03
421 596 4.159321 AGACATATGCGATGAGGTGGATAG 59.841 45.833 1.58 0.00 0.00 2.08
437 626 5.067805 GGTGGATAGGTTGTGGATGAATTTC 59.932 44.000 0.00 0.00 0.00 2.17
485 677 8.581578 TCCTTTTCTTAACTTGTTCAGTTTGTT 58.418 29.630 0.00 0.00 43.89 2.83
493 685 9.849166 TTAACTTGTTCAGTTTGTTCTTAAAGG 57.151 29.630 0.00 0.00 43.89 3.11
504 696 9.190317 AGTTTGTTCTTAAAGGAAATTCTCAGT 57.810 29.630 0.00 0.00 0.00 3.41
508 700 9.354673 TGTTCTTAAAGGAAATTCTCAGTTCAT 57.645 29.630 0.00 0.00 0.00 2.57
554 749 0.744057 CCGCCACTGCATGTGTGATA 60.744 55.000 18.18 0.00 44.81 2.15
578 773 1.613928 TGGGCCCGGACTGACATAA 60.614 57.895 19.37 0.00 0.00 1.90
579 774 1.146263 GGGCCCGGACTGACATAAG 59.854 63.158 5.69 0.00 0.00 1.73
580 775 1.623542 GGGCCCGGACTGACATAAGT 61.624 60.000 5.69 0.00 0.00 2.24
581 776 1.117150 GGCCCGGACTGACATAAGTA 58.883 55.000 0.73 0.00 0.00 2.24
582 777 1.483415 GGCCCGGACTGACATAAGTAA 59.517 52.381 0.73 0.00 0.00 2.24
584 779 3.195661 GCCCGGACTGACATAAGTAAAG 58.804 50.000 0.73 0.00 0.00 1.85
585 780 3.369157 GCCCGGACTGACATAAGTAAAGT 60.369 47.826 0.73 0.00 0.00 2.66
586 781 4.142093 GCCCGGACTGACATAAGTAAAGTA 60.142 45.833 0.73 0.00 0.00 2.24
587 782 5.452917 GCCCGGACTGACATAAGTAAAGTAT 60.453 44.000 0.73 0.00 0.00 2.12
588 783 6.579865 CCCGGACTGACATAAGTAAAGTATT 58.420 40.000 0.73 0.00 0.00 1.89
589 784 6.700520 CCCGGACTGACATAAGTAAAGTATTC 59.299 42.308 0.73 0.00 0.00 1.75
590 785 6.700520 CCGGACTGACATAAGTAAAGTATTCC 59.299 42.308 0.00 0.00 0.00 3.01
591 786 6.700520 CGGACTGACATAAGTAAAGTATTCCC 59.299 42.308 0.00 0.00 0.00 3.97
592 787 7.417570 CGGACTGACATAAGTAAAGTATTCCCT 60.418 40.741 0.00 0.00 0.00 4.20
593 788 7.927092 GGACTGACATAAGTAAAGTATTCCCTC 59.073 40.741 0.00 0.00 0.00 4.30
594 789 7.793036 ACTGACATAAGTAAAGTATTCCCTCC 58.207 38.462 0.00 0.00 0.00 4.30
595 790 7.402071 ACTGACATAAGTAAAGTATTCCCTCCA 59.598 37.037 0.00 0.00 0.00 3.86
596 791 8.331931 TGACATAAGTAAAGTATTCCCTCCAT 57.668 34.615 0.00 0.00 0.00 3.41
597 792 8.778059 TGACATAAGTAAAGTATTCCCTCCATT 58.222 33.333 0.00 0.00 0.00 3.16
598 793 9.274206 GACATAAGTAAAGTATTCCCTCCATTC 57.726 37.037 0.00 0.00 0.00 2.67
599 794 8.218488 ACATAAGTAAAGTATTCCCTCCATTCC 58.782 37.037 0.00 0.00 0.00 3.01
600 795 6.910259 AAGTAAAGTATTCCCTCCATTCCT 57.090 37.500 0.00 0.00 0.00 3.36
601 796 6.910259 AGTAAAGTATTCCCTCCATTCCTT 57.090 37.500 0.00 0.00 0.00 3.36
602 797 7.285340 AGTAAAGTATTCCCTCCATTCCTTT 57.715 36.000 0.00 0.00 0.00 3.11
603 798 7.709601 AGTAAAGTATTCCCTCCATTCCTTTT 58.290 34.615 0.00 0.00 0.00 2.27
604 799 8.177456 AGTAAAGTATTCCCTCCATTCCTTTTT 58.823 33.333 0.00 0.00 0.00 1.94
605 800 9.470399 GTAAAGTATTCCCTCCATTCCTTTTTA 57.530 33.333 0.00 0.00 0.00 1.52
606 801 8.595362 AAAGTATTCCCTCCATTCCTTTTTAG 57.405 34.615 0.00 0.00 0.00 1.85
607 802 7.285340 AGTATTCCCTCCATTCCTTTTTAGT 57.715 36.000 0.00 0.00 0.00 2.24
608 803 7.347252 AGTATTCCCTCCATTCCTTTTTAGTC 58.653 38.462 0.00 0.00 0.00 2.59
609 804 5.860648 TTCCCTCCATTCCTTTTTAGTCT 57.139 39.130 0.00 0.00 0.00 3.24
610 805 5.179452 TCCCTCCATTCCTTTTTAGTCTG 57.821 43.478 0.00 0.00 0.00 3.51
611 806 3.696548 CCCTCCATTCCTTTTTAGTCTGC 59.303 47.826 0.00 0.00 0.00 4.26
612 807 4.335416 CCTCCATTCCTTTTTAGTCTGCA 58.665 43.478 0.00 0.00 0.00 4.41
613 808 4.952335 CCTCCATTCCTTTTTAGTCTGCAT 59.048 41.667 0.00 0.00 0.00 3.96
614 809 6.122277 CCTCCATTCCTTTTTAGTCTGCATA 58.878 40.000 0.00 0.00 0.00 3.14
615 810 6.774656 CCTCCATTCCTTTTTAGTCTGCATAT 59.225 38.462 0.00 0.00 0.00 1.78
616 811 7.939039 CCTCCATTCCTTTTTAGTCTGCATATA 59.061 37.037 0.00 0.00 0.00 0.86
617 812 9.342308 CTCCATTCCTTTTTAGTCTGCATATAA 57.658 33.333 0.00 0.00 0.00 0.98
618 813 9.693739 TCCATTCCTTTTTAGTCTGCATATAAA 57.306 29.630 0.00 0.00 0.00 1.40
619 814 9.956720 CCATTCCTTTTTAGTCTGCATATAAAG 57.043 33.333 0.00 0.00 0.00 1.85
624 819 9.573133 CCTTTTTAGTCTGCATATAAAGTTTGG 57.427 33.333 0.00 0.00 0.00 3.28
627 822 8.856153 TTTAGTCTGCATATAAAGTTTGGTCA 57.144 30.769 0.00 0.00 0.00 4.02
628 823 8.856153 TTAGTCTGCATATAAAGTTTGGTCAA 57.144 30.769 0.00 0.00 0.00 3.18
629 824 7.759489 AGTCTGCATATAAAGTTTGGTCAAA 57.241 32.000 0.00 0.00 0.00 2.69
630 825 8.353423 AGTCTGCATATAAAGTTTGGTCAAAT 57.647 30.769 0.00 0.00 32.36 2.32
631 826 8.806146 AGTCTGCATATAAAGTTTGGTCAAATT 58.194 29.630 0.00 0.00 32.36 1.82
632 827 9.076596 GTCTGCATATAAAGTTTGGTCAAATTC 57.923 33.333 0.00 0.00 32.36 2.17
633 828 8.801299 TCTGCATATAAAGTTTGGTCAAATTCA 58.199 29.630 0.00 0.00 32.36 2.57
634 829 8.984891 TGCATATAAAGTTTGGTCAAATTCAG 57.015 30.769 0.00 0.00 32.36 3.02
635 830 8.034215 TGCATATAAAGTTTGGTCAAATTCAGG 58.966 33.333 0.00 0.00 32.36 3.86
636 831 8.034804 GCATATAAAGTTTGGTCAAATTCAGGT 58.965 33.333 0.00 0.00 32.36 4.00
637 832 9.927668 CATATAAAGTTTGGTCAAATTCAGGTT 57.072 29.630 0.00 0.00 32.36 3.50
723 918 9.908152 ATTATCAGATGCACAATGAAATGTATG 57.092 29.630 0.00 0.00 30.84 2.39
724 919 6.762702 TCAGATGCACAATGAAATGTATGT 57.237 33.333 0.00 0.00 30.84 2.29
725 920 7.160547 TCAGATGCACAATGAAATGTATGTT 57.839 32.000 0.00 0.00 30.84 2.71
726 921 7.252708 TCAGATGCACAATGAAATGTATGTTC 58.747 34.615 0.00 0.00 30.84 3.18
727 922 7.030768 CAGATGCACAATGAAATGTATGTTCA 58.969 34.615 0.00 0.00 39.24 3.18
728 923 7.704899 CAGATGCACAATGAAATGTATGTTCAT 59.295 33.333 0.00 0.00 45.47 2.57
729 924 7.704899 AGATGCACAATGAAATGTATGTTCATG 59.295 33.333 0.00 0.00 43.32 3.07
730 925 5.577554 TGCACAATGAAATGTATGTTCATGC 59.422 36.000 0.69 3.09 43.32 4.06
731 926 5.808540 GCACAATGAAATGTATGTTCATGCT 59.191 36.000 0.69 0.00 43.32 3.79
732 927 6.974048 GCACAATGAAATGTATGTTCATGCTA 59.026 34.615 0.69 0.00 43.32 3.49
733 928 7.650504 GCACAATGAAATGTATGTTCATGCTAT 59.349 33.333 0.69 0.00 43.32 2.97
821 1016 9.757859 TTGACTTTAACTAAATTTTATACGCGG 57.242 29.630 12.47 0.00 0.00 6.46
822 1017 9.149225 TGACTTTAACTAAATTTTATACGCGGA 57.851 29.630 12.47 0.00 0.00 5.54
823 1018 9.628983 GACTTTAACTAAATTTTATACGCGGAG 57.371 33.333 12.47 0.00 0.00 4.63
824 1019 9.154847 ACTTTAACTAAATTTTATACGCGGAGT 57.845 29.630 12.47 0.00 0.00 3.85
830 1025 9.977762 ACTAAATTTTATACGCGGAGTAAAAAG 57.022 29.630 21.01 17.49 39.04 2.27
833 1028 9.896263 AAATTTTATACGCGGAGTAAAAAGAAA 57.104 25.926 21.01 5.58 39.04 2.52
834 1029 9.896263 AATTTTATACGCGGAGTAAAAAGAAAA 57.104 25.926 21.01 8.66 39.04 2.29
835 1030 8.712341 TTTTATACGCGGAGTAAAAAGAAAAC 57.288 30.769 12.47 0.00 39.04 2.43
836 1031 3.243226 ACGCGGAGTAAAAAGAAAACG 57.757 42.857 12.47 0.00 0.00 3.60
837 1032 2.032636 ACGCGGAGTAAAAAGAAAACGG 60.033 45.455 12.47 0.00 0.00 4.44
838 1033 2.221517 CGCGGAGTAAAAAGAAAACGGA 59.778 45.455 0.00 0.00 0.00 4.69
839 1034 3.663493 CGCGGAGTAAAAAGAAAACGGAG 60.663 47.826 0.00 0.00 0.00 4.63
840 1035 3.364664 GCGGAGTAAAAAGAAAACGGAGG 60.365 47.826 0.00 0.00 0.00 4.30
846 1041 7.307632 GGAGTAAAAAGAAAACGGAGGAAGTAC 60.308 40.741 0.00 0.00 0.00 2.73
861 1056 4.694037 AGGAAGTACGTAAATTGGTCAAGC 59.306 41.667 0.00 0.00 0.00 4.01
873 1068 0.957888 GGTCAAGCAGGTCCAGAAGC 60.958 60.000 0.00 0.00 0.00 3.86
901 1096 2.125753 GTGAGAGTGGGAGCTGCG 60.126 66.667 0.00 0.00 0.00 5.18
973 1183 0.674534 AAACTCACGAAGCGGAGACT 59.325 50.000 10.66 0.00 35.17 3.24
1143 1353 2.583593 GTCGCGGTGAGCTCATCC 60.584 66.667 21.47 20.30 45.59 3.51
1145 1355 3.842923 CGCGGTGAGCTCATCCCT 61.843 66.667 21.47 0.00 45.59 4.20
1177 1387 1.063567 TCCTCCTCTCAGTTCCTAGCC 60.064 57.143 0.00 0.00 0.00 3.93
1195 1406 2.110721 AGCCTCCAAGGTTCCATCTTTT 59.889 45.455 0.00 0.00 37.80 2.27
1254 1465 0.829602 TGATCGGAGCCCTGGATCTC 60.830 60.000 0.93 1.10 37.91 2.75
1322 1564 6.732154 AGAAGATCTGATGTGTTGTTGTTTG 58.268 36.000 0.00 0.00 0.00 2.93
1323 1565 5.443185 AGATCTGATGTGTTGTTGTTTGG 57.557 39.130 0.00 0.00 0.00 3.28
1325 1567 4.630894 TCTGATGTGTTGTTGTTTGGTC 57.369 40.909 0.00 0.00 0.00 4.02
1327 1569 4.704540 TCTGATGTGTTGTTGTTTGGTCTT 59.295 37.500 0.00 0.00 0.00 3.01
1328 1570 4.742417 TGATGTGTTGTTGTTTGGTCTTG 58.258 39.130 0.00 0.00 0.00 3.02
1338 1580 4.264460 TGTTTGGTCTTGTTTTTGCAGT 57.736 36.364 0.00 0.00 0.00 4.40
1346 1588 4.273480 GTCTTGTTTTTGCAGTCTGAGCTA 59.727 41.667 3.32 0.00 0.00 3.32
1492 1737 3.295973 ACCGGGACCATTTATTGATTGG 58.704 45.455 6.32 0.00 35.37 3.16
1553 1799 2.605837 TCACTTGGACTTGCGTAACA 57.394 45.000 0.00 0.00 0.00 2.41
1576 1822 3.161306 GTTAAATTCGAAAGGTCAGCGC 58.839 45.455 0.00 0.00 0.00 5.92
1608 1854 7.159322 AGGTCATCGATTACAGGTATATCAC 57.841 40.000 11.62 0.00 0.00 3.06
1609 1855 6.948886 AGGTCATCGATTACAGGTATATCACT 59.051 38.462 11.62 0.00 0.00 3.41
1611 1857 7.755822 GGTCATCGATTACAGGTATATCACTTC 59.244 40.741 11.62 0.00 0.00 3.01
1616 1868 6.863645 CGATTACAGGTATATCACTTCCACTG 59.136 42.308 0.00 0.00 0.00 3.66
1641 1893 4.280677 CCCTCTGCTGTTCAATGGTTAAAA 59.719 41.667 0.00 0.00 0.00 1.52
1682 1944 4.856664 ACACGACTACAACAGTACAGAAG 58.143 43.478 0.00 0.00 37.72 2.85
1691 1953 3.313012 ACAGTACAGAAGCGTGCATTA 57.687 42.857 0.00 0.00 0.00 1.90
1756 2018 7.926555 AGAGGAATACTGACAATTTACCATACG 59.073 37.037 0.00 0.00 0.00 3.06
1811 2172 2.040145 TGTTCATCTTGGGTGCATCTCA 59.960 45.455 0.00 0.00 0.00 3.27
1812 2173 2.681848 GTTCATCTTGGGTGCATCTCAG 59.318 50.000 0.00 0.00 0.00 3.35
1829 2196 6.362551 GCATCTCAGCACTTGCATAATAAATG 59.637 38.462 3.62 0.00 45.16 2.32
1915 2284 0.179124 GAGTCAGCGAGCTTCGGATT 60.179 55.000 0.00 0.00 40.84 3.01
2004 2373 8.682710 TGAAGCTACACAACTGTTTTAGAATTT 58.317 29.630 0.00 0.00 0.00 1.82
2041 2410 5.419239 GCCATCTTATTCAGGCTAGATCT 57.581 43.478 0.00 0.00 43.70 2.75
2045 2414 7.094848 GCCATCTTATTCAGGCTAGATCTTTTC 60.095 40.741 0.00 0.00 43.70 2.29
2072 2441 7.262772 TCAACATATTAAGTTGTCTACTCGGG 58.737 38.462 10.59 0.00 44.97 5.14
2085 2454 9.352191 GTTGTCTACTCGGGTATATGGATATAT 57.648 37.037 0.00 0.00 34.04 0.86
2214 2593 4.915667 GCGAAAAAGAATGGGTGAAAGTAC 59.084 41.667 0.00 0.00 0.00 2.73
2275 2654 3.626930 TGTGGCACCTGTTTACTCTTTT 58.373 40.909 16.26 0.00 0.00 2.27
2280 2659 4.261197 GGCACCTGTTTACTCTTTTGACTG 60.261 45.833 0.00 0.00 0.00 3.51
2282 2661 5.277538 GCACCTGTTTACTCTTTTGACTGAG 60.278 44.000 0.00 0.00 36.47 3.35
2284 2663 6.316390 CACCTGTTTACTCTTTTGACTGAGTT 59.684 38.462 0.00 0.00 42.67 3.01
2293 2674 8.336801 ACTCTTTTGACTGAGTTTAAGTTGTT 57.663 30.769 0.00 0.00 40.21 2.83
2310 2691 5.194432 AGTTGTTACCACACCATAAACACA 58.806 37.500 0.00 0.00 30.32 3.72
2317 2698 3.244561 CCACACCATAAACACAGGAGAGT 60.245 47.826 0.00 0.00 0.00 3.24
2320 2701 3.997021 CACCATAAACACAGGAGAGTCAC 59.003 47.826 0.00 0.00 0.00 3.67
2326 2707 1.610673 ACAGGAGAGTCACGGCCAT 60.611 57.895 2.24 0.00 0.00 4.40
2327 2708 0.324368 ACAGGAGAGTCACGGCCATA 60.324 55.000 2.24 0.00 0.00 2.74
2342 2728 2.956333 GGCCATACCCCATAGTTTGTTC 59.044 50.000 0.00 0.00 0.00 3.18
2360 2746 5.869753 TGTTCTGCTTATTCTTCTTGCTC 57.130 39.130 0.00 0.00 0.00 4.26
2370 2756 3.558931 TCTTCTTGCTCAGTTGTTCCA 57.441 42.857 0.00 0.00 0.00 3.53
2375 2761 2.121291 TGCTCAGTTGTTCCACACAA 57.879 45.000 0.00 0.00 43.55 3.33
2376 2762 2.016318 TGCTCAGTTGTTCCACACAAG 58.984 47.619 0.00 0.00 46.49 3.16
2414 2800 3.137533 GCAGCAAGCCCTAGATTAGAAG 58.862 50.000 0.00 0.00 37.23 2.85
2436 2822 0.471022 TATATCCCCAGTGCTCGCCA 60.471 55.000 0.00 0.00 0.00 5.69
2443 2829 0.105593 CCAGTGCTCGCCATGATAGT 59.894 55.000 0.00 0.00 0.00 2.12
2461 2847 5.605488 TGATAGTCTTATTACAAGGACCCCC 59.395 44.000 0.00 0.00 0.00 5.40
2462 2848 3.810623 AGTCTTATTACAAGGACCCCCA 58.189 45.455 0.00 0.00 33.88 4.96
2463 2849 3.780850 AGTCTTATTACAAGGACCCCCAG 59.219 47.826 0.00 0.00 33.88 4.45
2464 2850 3.778629 GTCTTATTACAAGGACCCCCAGA 59.221 47.826 0.00 0.00 33.88 3.86
2465 2851 3.778629 TCTTATTACAAGGACCCCCAGAC 59.221 47.826 0.00 0.00 33.88 3.51
2466 2852 2.361085 ATTACAAGGACCCCCAGACT 57.639 50.000 0.00 0.00 33.88 3.24
2467 2853 1.652947 TTACAAGGACCCCCAGACTC 58.347 55.000 0.00 0.00 33.88 3.36
2469 2855 1.609501 CAAGGACCCCCAGACTCGA 60.610 63.158 0.00 0.00 33.88 4.04
2470 2856 1.609794 AAGGACCCCCAGACTCGAC 60.610 63.158 0.00 0.00 33.88 4.20
2490 2876 2.950975 ACGATGCCAATACAATCATGCA 59.049 40.909 0.00 0.00 0.00 3.96
2501 2887 7.040271 CCAATACAATCATGCAGGACATCATTA 60.040 37.037 1.71 0.00 36.64 1.90
2521 2907 9.968870 ATCATTAAGAGATAGTCTTCCGTTAAC 57.031 33.333 0.00 0.00 42.26 2.01
2555 2990 9.586435 AAGCTAAATAACAAGCAAATGATAACC 57.414 29.630 0.00 0.00 41.32 2.85
2579 3014 5.812642 CGCTACTCTGTATTGGATTGTTCTT 59.187 40.000 0.00 0.00 0.00 2.52
2618 3053 7.877612 TGAATATGAGCTGTAAAGAAGTGTGAA 59.122 33.333 0.00 0.00 0.00 3.18
2636 3072 9.485206 AAGTGTGAATTGTAGTTACTAATCGTT 57.515 29.630 0.00 0.00 0.00 3.85
2659 3095 9.825972 CGTTTACTGATTGTCTGATAATTTGTT 57.174 29.630 1.06 0.00 0.00 2.83
2724 3160 4.819105 TCCAGTTACTGTGGAAGGTATG 57.181 45.455 11.68 0.00 41.32 2.39
2729 3165 1.064003 ACTGTGGAAGGTATGGTGCA 58.936 50.000 0.00 0.00 0.00 4.57
2781 3217 8.110860 TGATGGAAAACAGAGTTTATTTCTCC 57.889 34.615 0.00 0.35 33.42 3.71
2784 3220 9.981460 ATGGAAAACAGAGTTTATTTCTCCTAT 57.019 29.630 10.09 2.86 33.42 2.57
2827 3263 5.499004 TTGAACATACCAGCCTAGACTTT 57.501 39.130 0.00 0.00 0.00 2.66
2828 3264 4.832248 TGAACATACCAGCCTAGACTTTG 58.168 43.478 0.00 0.00 0.00 2.77
2830 3266 5.482526 TGAACATACCAGCCTAGACTTTGTA 59.517 40.000 0.00 0.00 0.00 2.41
2831 3267 5.340439 ACATACCAGCCTAGACTTTGTAC 57.660 43.478 0.00 0.00 0.00 2.90
2832 3268 5.024118 ACATACCAGCCTAGACTTTGTACT 58.976 41.667 0.00 0.00 0.00 2.73
2833 3269 6.192773 ACATACCAGCCTAGACTTTGTACTA 58.807 40.000 0.00 0.00 0.00 1.82
2834 3270 6.666546 ACATACCAGCCTAGACTTTGTACTAA 59.333 38.462 0.00 0.00 0.00 2.24
2835 3271 7.179694 ACATACCAGCCTAGACTTTGTACTAAA 59.820 37.037 0.00 0.00 0.00 1.85
2840 3306 6.256757 CAGCCTAGACTTTGTACTAAATCAGC 59.743 42.308 1.64 1.83 0.00 4.26
2858 3324 5.791336 TCAGCGACAAGTAATATGGATCT 57.209 39.130 0.00 0.00 0.00 2.75
2861 3327 5.632764 CAGCGACAAGTAATATGGATCTGAG 59.367 44.000 0.00 0.00 0.00 3.35
2987 3497 5.874810 GCCATCATCTTGTTAGTGAAGTGTA 59.125 40.000 0.00 0.00 0.00 2.90
3003 3513 0.103572 TGTATAAAGGGCGCTCGTCC 59.896 55.000 7.64 4.52 40.91 4.79
3030 3540 7.562135 TCTTCAGTAAAACCTTGTAACTGACT 58.438 34.615 3.12 0.00 44.49 3.41
3050 3560 0.963355 AACAGTGTGTTGGGCGTGTT 60.963 50.000 0.00 0.00 39.45 3.32
3091 3601 3.497763 CCTTGTAACCCCATTGAGTGTGA 60.498 47.826 0.00 0.00 0.00 3.58
3127 3637 5.918608 TGTAGCCTTAATAAAGCTCTCAGG 58.081 41.667 0.00 0.00 0.00 3.86
3163 3678 3.815401 ACATGAAGAACTCTGTTTTCCCG 59.185 43.478 0.00 0.00 0.00 5.14
3171 3686 5.238650 AGAACTCTGTTTTCCCGTATTTGTG 59.761 40.000 0.00 0.00 0.00 3.33
3192 3707 6.734137 TGTGTAAGGTCAAATTTGCTTGTAG 58.266 36.000 13.54 0.00 0.00 2.74
3252 3767 6.373779 AGAAATGCAGATTTAACAGTTGTCG 58.626 36.000 0.00 0.00 31.58 4.35
3283 3798 8.593945 TGATATTACCTTTCTTGGCTTTTGAT 57.406 30.769 0.00 0.00 0.00 2.57
3342 3857 4.702392 CGTGCTGACAAAGTTCACTTATC 58.298 43.478 0.00 0.00 34.61 1.75
3377 3892 2.164017 GAGGAAACTGAGGACGAGGTAC 59.836 54.545 0.00 0.00 44.43 3.34
3384 3902 2.820787 CTGAGGACGAGGTACTTCTTGT 59.179 50.000 3.27 0.00 41.55 3.16
3392 3910 4.177026 CGAGGTACTTCTTGTCTTGGATG 58.823 47.826 3.27 0.00 41.55 3.51
3404 3922 3.245586 TGTCTTGGATGGCATTACCCTTT 60.246 43.478 0.00 0.00 37.83 3.11
3536 4059 5.546110 ACAAGGCCTAACATGGGTTATTTTT 59.454 36.000 5.16 0.00 38.72 1.94
3937 4463 3.646162 TGTCTTAAAGAGGGACTTGCAGA 59.354 43.478 0.00 0.00 41.55 4.26
3996 4525 6.218019 TCAAACTTTGAGGAATTTCTGCATG 58.782 36.000 0.00 0.00 34.08 4.06
4032 4561 2.916702 AGCATGGTATGATTCGCTGA 57.083 45.000 0.00 0.00 0.00 4.26
4042 4571 5.406780 GGTATGATTCGCTGAACTAATCTGG 59.593 44.000 0.00 0.00 32.89 3.86
4066 4595 9.342308 TGGATTCTTATAATGTCTTGTTGATCC 57.658 33.333 0.00 0.00 0.00 3.36
4067 4596 9.342308 GGATTCTTATAATGTCTTGTTGATCCA 57.658 33.333 0.00 0.00 0.00 3.41
4070 4599 8.213518 TCTTATAATGTCTTGTTGATCCAAGC 57.786 34.615 6.80 4.04 41.29 4.01
4071 4600 8.049117 TCTTATAATGTCTTGTTGATCCAAGCT 58.951 33.333 6.80 0.00 41.29 3.74
4072 4601 9.330063 CTTATAATGTCTTGTTGATCCAAGCTA 57.670 33.333 6.80 0.54 41.29 3.32
4074 4603 3.338249 TGTCTTGTTGATCCAAGCTAGC 58.662 45.455 6.62 6.62 41.29 3.42
4075 4604 3.008375 TGTCTTGTTGATCCAAGCTAGCT 59.992 43.478 12.68 12.68 41.29 3.32
4076 4605 3.620821 GTCTTGTTGATCCAAGCTAGCTC 59.379 47.826 19.65 5.78 41.29 4.09
4077 4606 3.261643 TCTTGTTGATCCAAGCTAGCTCA 59.738 43.478 19.65 8.73 41.29 4.26
4078 4607 3.701205 TGTTGATCCAAGCTAGCTCAA 57.299 42.857 19.65 14.65 0.00 3.02
4079 4608 3.338249 TGTTGATCCAAGCTAGCTCAAC 58.662 45.455 27.36 27.36 43.67 3.18
4092 4716 1.009675 CTCAACTTGTGCGTGTGCC 60.010 57.895 0.00 0.00 41.78 5.01
4113 4737 2.620112 CCAACAGACAAGGCGCCAG 61.620 63.158 31.54 23.15 0.00 4.85
4126 5254 1.798735 CGCCAGTTGATCCAAGCAG 59.201 57.895 0.00 0.00 0.00 4.24
4136 5264 3.730761 CCAAGCAGGTGCACGCTC 61.731 66.667 17.91 6.26 45.16 5.03
4166 5294 2.034124 CCCTCCGTCCGGAAATACTTA 58.966 52.381 5.23 0.00 44.66 2.24
4230 5358 7.979444 TCAGTTCTAGATACAACCCTTTTTG 57.021 36.000 0.00 0.00 0.00 2.44
4232 5360 7.660208 TCAGTTCTAGATACAACCCTTTTTGTC 59.340 37.037 0.00 0.00 40.29 3.18
4240 5368 4.522114 ACAACCCTTTTTGTCCATTTTGG 58.478 39.130 0.00 0.00 34.48 3.28
4330 5458 8.821147 AAACTGATACTTGTCATACGTGTAAA 57.179 30.769 0.00 0.00 0.00 2.01
4350 5479 9.221775 GTGTAAATTGTTATTTCATCGTGATCC 57.778 33.333 0.00 0.00 35.61 3.36
4363 5492 5.633601 TCATCGTGATCCGTATTGAAATAGC 59.366 40.000 3.97 0.00 37.94 2.97
4368 5497 6.562270 CGTGATCCGTATTGAAATAGCTGTTC 60.562 42.308 0.00 0.13 0.00 3.18
4370 5499 6.257849 TGATCCGTATTGAAATAGCTGTTCAC 59.742 38.462 12.72 4.31 34.78 3.18
4456 5585 8.671384 AATATGAAATTGGAATGGCTGAAATG 57.329 30.769 0.00 0.00 0.00 2.32
4468 5597 7.818930 GGAATGGCTGAAATGACATTTTAAAGA 59.181 33.333 14.46 1.02 44.85 2.52
4503 6442 7.122650 TCCTTGATCTCACCCATTTGAAATAAC 59.877 37.037 0.00 0.00 0.00 1.89
4536 6475 1.674359 TTTGTGGTGTGCGAGATTGT 58.326 45.000 0.00 0.00 0.00 2.71
4539 6478 2.139917 TGTGGTGTGCGAGATTGTTAC 58.860 47.619 0.00 0.00 0.00 2.50
4540 6479 1.126113 GTGGTGTGCGAGATTGTTACG 59.874 52.381 0.00 0.00 0.00 3.18
4542 6481 1.389106 GGTGTGCGAGATTGTTACGTC 59.611 52.381 0.00 0.00 0.00 4.34
4543 6482 1.389106 GTGTGCGAGATTGTTACGTCC 59.611 52.381 0.00 0.00 0.00 4.79
4545 6484 2.268298 GTGCGAGATTGTTACGTCCAT 58.732 47.619 0.00 0.00 0.00 3.41
4547 6486 1.517276 GCGAGATTGTTACGTCCATCG 59.483 52.381 0.00 0.00 46.00 3.84
4548 6487 2.117137 CGAGATTGTTACGTCCATCGG 58.883 52.381 0.00 0.00 44.69 4.18
4549 6488 2.470821 GAGATTGTTACGTCCATCGGG 58.529 52.381 0.00 0.00 44.69 5.14
4550 6489 1.829222 AGATTGTTACGTCCATCGGGT 59.171 47.619 0.00 0.00 44.69 5.28
4551 6490 2.235402 AGATTGTTACGTCCATCGGGTT 59.765 45.455 0.00 0.00 44.69 4.11
4553 6492 2.083167 TGTTACGTCCATCGGGTTTC 57.917 50.000 0.00 0.00 44.69 2.78
4583 9615 0.464554 CTTGCTCGATCCCCTTTCCC 60.465 60.000 0.00 0.00 0.00 3.97
4584 9616 0.914417 TTGCTCGATCCCCTTTCCCT 60.914 55.000 0.00 0.00 0.00 4.20
4585 9617 0.914417 TGCTCGATCCCCTTTCCCTT 60.914 55.000 0.00 0.00 0.00 3.95
4586 9618 0.256177 GCTCGATCCCCTTTCCCTTT 59.744 55.000 0.00 0.00 0.00 3.11
4588 9620 1.559682 CTCGATCCCCTTTCCCTTTCA 59.440 52.381 0.00 0.00 0.00 2.69
4589 9621 1.989586 TCGATCCCCTTTCCCTTTCAA 59.010 47.619 0.00 0.00 0.00 2.69
4590 9622 2.092323 CGATCCCCTTTCCCTTTCAAC 58.908 52.381 0.00 0.00 0.00 3.18
4591 9623 2.554344 CGATCCCCTTTCCCTTTCAACA 60.554 50.000 0.00 0.00 0.00 3.33
4592 9624 3.506398 GATCCCCTTTCCCTTTCAACAA 58.494 45.455 0.00 0.00 0.00 2.83
4593 9625 3.628832 TCCCCTTTCCCTTTCAACAAT 57.371 42.857 0.00 0.00 0.00 2.71
4599 9631 1.079888 CCCTTTCAACAATGCGCCC 60.080 57.895 4.18 0.00 0.00 6.13
4600 9632 1.664873 CCTTTCAACAATGCGCCCA 59.335 52.632 4.18 0.00 0.00 5.36
4601 9633 0.033228 CCTTTCAACAATGCGCCCAA 59.967 50.000 4.18 0.00 0.00 4.12
4608 9640 2.203625 AATGCGCCCAAACCCACT 60.204 55.556 4.18 0.00 0.00 4.00
4613 9645 2.022240 GCGCCCAAACCCACTGAAAA 62.022 55.000 0.00 0.00 0.00 2.29
4719 9751 1.228184 GGAGATCCTCCTCCGCGTA 60.228 63.158 4.92 0.00 46.41 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.112452 AGCCTAACAAAATTCAACAGTTTCT 57.888 32.000 0.00 0.00 0.00 2.52
1 2 6.978080 TGAGCCTAACAAAATTCAACAGTTTC 59.022 34.615 0.00 0.00 0.00 2.78
2 3 6.872920 TGAGCCTAACAAAATTCAACAGTTT 58.127 32.000 0.00 0.00 0.00 2.66
3 4 6.321181 TCTGAGCCTAACAAAATTCAACAGTT 59.679 34.615 0.00 0.00 0.00 3.16
4 5 5.827797 TCTGAGCCTAACAAAATTCAACAGT 59.172 36.000 0.00 0.00 0.00 3.55
5 6 6.317789 TCTGAGCCTAACAAAATTCAACAG 57.682 37.500 0.00 0.00 0.00 3.16
6 7 5.241506 CCTCTGAGCCTAACAAAATTCAACA 59.758 40.000 0.00 0.00 0.00 3.33
7 8 5.241728 ACCTCTGAGCCTAACAAAATTCAAC 59.758 40.000 0.00 0.00 0.00 3.18
8 9 5.385198 ACCTCTGAGCCTAACAAAATTCAA 58.615 37.500 0.00 0.00 0.00 2.69
9 10 4.985538 ACCTCTGAGCCTAACAAAATTCA 58.014 39.130 0.00 0.00 0.00 2.57
10 11 5.966742 AACCTCTGAGCCTAACAAAATTC 57.033 39.130 0.00 0.00 0.00 2.17
11 12 6.731292 AAAACCTCTGAGCCTAACAAAATT 57.269 33.333 0.00 0.00 0.00 1.82
12 13 6.434340 CCTAAAACCTCTGAGCCTAACAAAAT 59.566 38.462 0.00 0.00 0.00 1.82
13 14 5.768164 CCTAAAACCTCTGAGCCTAACAAAA 59.232 40.000 0.00 0.00 0.00 2.44
14 15 5.072600 TCCTAAAACCTCTGAGCCTAACAAA 59.927 40.000 0.00 0.00 0.00 2.83
15 16 4.595781 TCCTAAAACCTCTGAGCCTAACAA 59.404 41.667 0.00 0.00 0.00 2.83
16 17 4.164981 TCCTAAAACCTCTGAGCCTAACA 58.835 43.478 0.00 0.00 0.00 2.41
17 18 4.820894 TCCTAAAACCTCTGAGCCTAAC 57.179 45.455 0.00 0.00 0.00 2.34
18 19 6.388619 AATTCCTAAAACCTCTGAGCCTAA 57.611 37.500 0.00 0.00 0.00 2.69
19 20 7.504926 TTAATTCCTAAAACCTCTGAGCCTA 57.495 36.000 0.00 0.00 0.00 3.93
20 21 4.936685 AATTCCTAAAACCTCTGAGCCT 57.063 40.909 0.00 0.00 0.00 4.58
21 22 6.659668 ACTTTAATTCCTAAAACCTCTGAGCC 59.340 38.462 0.00 0.00 0.00 4.70
22 23 7.689446 ACTTTAATTCCTAAAACCTCTGAGC 57.311 36.000 0.00 0.00 0.00 4.26
45 46 9.382244 GCGACAACTGAATTATGGAATTATAAC 57.618 33.333 0.00 0.00 35.33 1.89
46 47 9.114952 TGCGACAACTGAATTATGGAATTATAA 57.885 29.630 0.00 0.00 35.33 0.98
47 48 8.556194 GTGCGACAACTGAATTATGGAATTATA 58.444 33.333 0.00 0.00 35.33 0.98
48 49 7.066887 TGTGCGACAACTGAATTATGGAATTAT 59.933 33.333 0.00 0.00 35.33 1.28
49 50 6.372937 TGTGCGACAACTGAATTATGGAATTA 59.627 34.615 0.00 0.00 35.33 1.40
50 51 5.182950 TGTGCGACAACTGAATTATGGAATT 59.817 36.000 0.00 0.00 38.00 2.17
51 52 4.699735 TGTGCGACAACTGAATTATGGAAT 59.300 37.500 0.00 0.00 0.00 3.01
52 53 4.068599 TGTGCGACAACTGAATTATGGAA 58.931 39.130 0.00 0.00 0.00 3.53
53 54 3.669536 TGTGCGACAACTGAATTATGGA 58.330 40.909 0.00 0.00 0.00 3.41
54 55 4.496341 GGATGTGCGACAACTGAATTATGG 60.496 45.833 0.00 0.00 0.00 2.74
55 56 4.094739 TGGATGTGCGACAACTGAATTATG 59.905 41.667 0.00 0.00 0.00 1.90
56 57 4.260985 TGGATGTGCGACAACTGAATTAT 58.739 39.130 0.00 0.00 0.00 1.28
57 58 3.669536 TGGATGTGCGACAACTGAATTA 58.330 40.909 0.00 0.00 0.00 1.40
58 59 2.503331 TGGATGTGCGACAACTGAATT 58.497 42.857 0.00 0.00 0.00 2.17
59 60 2.183478 TGGATGTGCGACAACTGAAT 57.817 45.000 0.00 0.00 0.00 2.57
60 61 1.960417 TTGGATGTGCGACAACTGAA 58.040 45.000 0.00 0.00 0.00 3.02
61 62 1.872952 CTTTGGATGTGCGACAACTGA 59.127 47.619 0.00 0.00 0.00 3.41
62 63 1.603802 ACTTTGGATGTGCGACAACTG 59.396 47.619 0.00 0.00 0.00 3.16
63 64 1.603802 CACTTTGGATGTGCGACAACT 59.396 47.619 0.00 0.00 0.00 3.16
64 65 2.036556 CACTTTGGATGTGCGACAAC 57.963 50.000 0.00 0.00 0.00 3.32
71 72 0.892755 ATGCTGGCACTTTGGATGTG 59.107 50.000 0.00 0.00 38.36 3.21
72 73 0.892755 CATGCTGGCACTTTGGATGT 59.107 50.000 0.00 0.00 0.00 3.06
73 74 0.174845 CCATGCTGGCACTTTGGATG 59.825 55.000 7.66 0.00 0.00 3.51
74 75 0.040058 TCCATGCTGGCACTTTGGAT 59.960 50.000 11.05 0.00 37.47 3.41
75 76 0.178967 TTCCATGCTGGCACTTTGGA 60.179 50.000 11.05 11.05 37.47 3.53
76 77 0.680618 TTTCCATGCTGGCACTTTGG 59.319 50.000 7.21 7.21 37.47 3.28
77 78 1.938016 GCTTTCCATGCTGGCACTTTG 60.938 52.381 0.00 0.00 37.47 2.77
78 79 0.319405 GCTTTCCATGCTGGCACTTT 59.681 50.000 0.00 0.00 37.47 2.66
79 80 0.828762 TGCTTTCCATGCTGGCACTT 60.829 50.000 0.00 0.00 37.47 3.16
80 81 0.613853 ATGCTTTCCATGCTGGCACT 60.614 50.000 0.00 0.00 37.47 4.40
81 82 0.459585 CATGCTTTCCATGCTGGCAC 60.460 55.000 0.00 0.00 44.34 5.01
82 83 1.894512 CATGCTTTCCATGCTGGCA 59.105 52.632 0.00 0.00 44.34 4.92
83 84 4.827481 CATGCTTTCCATGCTGGC 57.173 55.556 0.00 0.00 44.34 4.85
89 90 5.471556 TGAACATGTTTCATGCTTTCCAT 57.528 34.783 13.36 0.00 33.39 3.41
90 91 4.933505 TGAACATGTTTCATGCTTTCCA 57.066 36.364 13.36 0.00 0.00 3.53
91 92 9.754382 ATATTATGAACATGTTTCATGCTTTCC 57.246 29.630 22.83 6.68 39.30 3.13
93 94 9.754382 GGATATTATGAACATGTTTCATGCTTT 57.246 29.630 22.83 12.02 39.30 3.51
94 95 9.139734 AGGATATTATGAACATGTTTCATGCTT 57.860 29.630 22.83 14.41 39.30 3.91
95 96 8.701908 AGGATATTATGAACATGTTTCATGCT 57.298 30.769 22.83 13.94 39.30 3.79
96 97 8.025445 GGAGGATATTATGAACATGTTTCATGC 58.975 37.037 22.83 11.90 39.30 4.06
97 98 9.293404 AGGAGGATATTATGAACATGTTTCATG 57.707 33.333 22.83 7.99 39.30 3.07
98 99 9.512588 GAGGAGGATATTATGAACATGTTTCAT 57.487 33.333 13.36 17.74 41.54 2.57
99 100 8.717717 AGAGGAGGATATTATGAACATGTTTCA 58.282 33.333 13.36 12.19 0.00 2.69
100 101 9.566432 AAGAGGAGGATATTATGAACATGTTTC 57.434 33.333 13.36 4.10 0.00 2.78
106 107 8.577296 CGAGTTAAGAGGAGGATATTATGAACA 58.423 37.037 0.00 0.00 0.00 3.18
107 108 8.794553 TCGAGTTAAGAGGAGGATATTATGAAC 58.205 37.037 0.00 0.00 0.00 3.18
108 109 8.935614 TCGAGTTAAGAGGAGGATATTATGAA 57.064 34.615 0.00 0.00 0.00 2.57
109 110 9.179909 GATCGAGTTAAGAGGAGGATATTATGA 57.820 37.037 0.00 0.00 0.00 2.15
110 111 8.961634 TGATCGAGTTAAGAGGAGGATATTATG 58.038 37.037 0.00 0.00 0.00 1.90
111 112 9.707957 ATGATCGAGTTAAGAGGAGGATATTAT 57.292 33.333 0.00 0.00 0.00 1.28
112 113 8.961634 CATGATCGAGTTAAGAGGAGGATATTA 58.038 37.037 0.00 0.00 0.00 0.98
113 114 7.453126 ACATGATCGAGTTAAGAGGAGGATATT 59.547 37.037 0.00 0.00 0.00 1.28
114 115 6.951198 ACATGATCGAGTTAAGAGGAGGATAT 59.049 38.462 0.00 0.00 0.00 1.63
115 116 6.307776 ACATGATCGAGTTAAGAGGAGGATA 58.692 40.000 0.00 0.00 0.00 2.59
116 117 5.144100 ACATGATCGAGTTAAGAGGAGGAT 58.856 41.667 0.00 0.00 0.00 3.24
117 118 4.537751 ACATGATCGAGTTAAGAGGAGGA 58.462 43.478 0.00 0.00 0.00 3.71
118 119 4.927978 ACATGATCGAGTTAAGAGGAGG 57.072 45.455 0.00 0.00 0.00 4.30
119 120 7.038659 AGAAAACATGATCGAGTTAAGAGGAG 58.961 38.462 0.00 0.00 0.00 3.69
120 121 6.936279 AGAAAACATGATCGAGTTAAGAGGA 58.064 36.000 0.00 0.00 0.00 3.71
121 122 7.759886 TGTAGAAAACATGATCGAGTTAAGAGG 59.240 37.037 0.00 0.00 31.43 3.69
122 123 8.689251 TGTAGAAAACATGATCGAGTTAAGAG 57.311 34.615 0.00 0.00 31.43 2.85
190 191 2.029290 ACACCTACTTGTAAGCCGTGAG 60.029 50.000 11.11 0.00 0.00 3.51
223 224 6.070596 ACATCAACTCACTGGACATTATCTCA 60.071 38.462 0.00 0.00 0.00 3.27
224 225 6.257411 CACATCAACTCACTGGACATTATCTC 59.743 42.308 0.00 0.00 0.00 2.75
232 233 5.695851 AAATTCACATCAACTCACTGGAC 57.304 39.130 0.00 0.00 0.00 4.02
233 234 6.713762 AAAAATTCACATCAACTCACTGGA 57.286 33.333 0.00 0.00 0.00 3.86
281 366 9.597999 GCAAATTCATCCACAAACTTTTTATTC 57.402 29.630 0.00 0.00 0.00 1.75
290 375 3.181528 CGCATGCAAATTCATCCACAAAC 60.182 43.478 19.57 0.00 0.00 2.93
291 376 2.994578 CGCATGCAAATTCATCCACAAA 59.005 40.909 19.57 0.00 0.00 2.83
292 377 2.608268 CGCATGCAAATTCATCCACAA 58.392 42.857 19.57 0.00 0.00 3.33
295 380 0.818938 AGCGCATGCAAATTCATCCA 59.181 45.000 19.57 0.00 46.23 3.41
296 381 1.202325 TCAGCGCATGCAAATTCATCC 60.202 47.619 19.57 0.00 46.23 3.51
298 383 2.658373 TTCAGCGCATGCAAATTCAT 57.342 40.000 19.57 0.00 46.23 2.57
299 384 2.435533 TTTCAGCGCATGCAAATTCA 57.564 40.000 19.57 0.00 46.23 2.57
301 386 2.758009 ACTTTTCAGCGCATGCAAATT 58.242 38.095 19.57 1.53 46.23 1.82
302 387 2.443887 ACTTTTCAGCGCATGCAAAT 57.556 40.000 19.57 0.00 46.23 2.32
303 388 3.361794 TTACTTTTCAGCGCATGCAAA 57.638 38.095 19.57 7.68 46.23 3.68
304 389 3.361794 TTTACTTTTCAGCGCATGCAA 57.638 38.095 19.57 0.58 46.23 4.08
309 484 3.310227 TCGACTTTTTACTTTTCAGCGCA 59.690 39.130 11.47 0.00 0.00 6.09
311 486 5.339611 CCAATCGACTTTTTACTTTTCAGCG 59.660 40.000 0.00 0.00 0.00 5.18
313 488 7.587757 CAGACCAATCGACTTTTTACTTTTCAG 59.412 37.037 0.00 0.00 0.00 3.02
326 501 1.552337 AGCACATCAGACCAATCGACT 59.448 47.619 0.00 0.00 0.00 4.18
329 504 2.349590 TCAAGCACATCAGACCAATCG 58.650 47.619 0.00 0.00 0.00 3.34
337 512 7.656542 AGTTATCTACATCATCAAGCACATCAG 59.343 37.037 0.00 0.00 0.00 2.90
338 513 7.503549 AGTTATCTACATCATCAAGCACATCA 58.496 34.615 0.00 0.00 0.00 3.07
343 518 6.114767 TGCAAGTTATCTACATCATCAAGCA 58.885 36.000 0.00 0.00 0.00 3.91
398 573 2.319844 TCCACCTCATCGCATATGTCT 58.680 47.619 4.29 0.00 0.00 3.41
399 574 2.820059 TCCACCTCATCGCATATGTC 57.180 50.000 4.29 0.00 0.00 3.06
406 581 1.139058 ACAACCTATCCACCTCATCGC 59.861 52.381 0.00 0.00 0.00 4.58
407 582 2.483714 CCACAACCTATCCACCTCATCG 60.484 54.545 0.00 0.00 0.00 3.84
408 583 2.771943 TCCACAACCTATCCACCTCATC 59.228 50.000 0.00 0.00 0.00 2.92
481 673 9.184523 TGAACTGAGAATTTCCTTTAAGAACAA 57.815 29.630 0.00 0.00 0.00 2.83
485 677 9.354673 ACAATGAACTGAGAATTTCCTTTAAGA 57.645 29.630 0.00 0.00 0.00 2.10
572 767 9.274206 GAATGGAGGGAATACTTTACTTATGTC 57.726 37.037 0.00 0.00 0.00 3.06
578 773 6.910259 AAGGAATGGAGGGAATACTTTACT 57.090 37.500 0.00 0.00 0.00 2.24
579 774 7.956328 AAAAGGAATGGAGGGAATACTTTAC 57.044 36.000 0.00 0.00 0.00 2.01
580 775 9.695155 CTAAAAAGGAATGGAGGGAATACTTTA 57.305 33.333 0.00 0.00 0.00 1.85
581 776 8.177456 ACTAAAAAGGAATGGAGGGAATACTTT 58.823 33.333 0.00 0.00 0.00 2.66
582 777 7.709601 ACTAAAAAGGAATGGAGGGAATACTT 58.290 34.615 0.00 0.00 0.00 2.24
584 779 7.283354 CAGACTAAAAAGGAATGGAGGGAATAC 59.717 40.741 0.00 0.00 0.00 1.89
585 780 7.346471 CAGACTAAAAAGGAATGGAGGGAATA 58.654 38.462 0.00 0.00 0.00 1.75
586 781 6.190587 CAGACTAAAAAGGAATGGAGGGAAT 58.809 40.000 0.00 0.00 0.00 3.01
587 782 5.570320 CAGACTAAAAAGGAATGGAGGGAA 58.430 41.667 0.00 0.00 0.00 3.97
588 783 4.567747 GCAGACTAAAAAGGAATGGAGGGA 60.568 45.833 0.00 0.00 0.00 4.20
589 784 3.696548 GCAGACTAAAAAGGAATGGAGGG 59.303 47.826 0.00 0.00 0.00 4.30
590 785 4.335416 TGCAGACTAAAAAGGAATGGAGG 58.665 43.478 0.00 0.00 0.00 4.30
591 786 7.814264 ATATGCAGACTAAAAAGGAATGGAG 57.186 36.000 0.00 0.00 0.00 3.86
592 787 9.693739 TTTATATGCAGACTAAAAAGGAATGGA 57.306 29.630 0.00 0.00 0.00 3.41
593 788 9.956720 CTTTATATGCAGACTAAAAAGGAATGG 57.043 33.333 0.00 0.00 0.00 3.16
598 793 9.573133 CCAAACTTTATATGCAGACTAAAAAGG 57.427 33.333 0.00 0.00 0.00 3.11
601 796 9.290988 TGACCAAACTTTATATGCAGACTAAAA 57.709 29.630 0.00 0.00 0.00 1.52
602 797 8.856153 TGACCAAACTTTATATGCAGACTAAA 57.144 30.769 0.00 0.00 0.00 1.85
603 798 8.856153 TTGACCAAACTTTATATGCAGACTAA 57.144 30.769 0.00 0.00 0.00 2.24
604 799 8.856153 TTTGACCAAACTTTATATGCAGACTA 57.144 30.769 0.00 0.00 0.00 2.59
605 800 7.759489 TTTGACCAAACTTTATATGCAGACT 57.241 32.000 0.00 0.00 0.00 3.24
606 801 8.986477 AATTTGACCAAACTTTATATGCAGAC 57.014 30.769 0.00 0.00 32.51 3.51
607 802 8.801299 TGAATTTGACCAAACTTTATATGCAGA 58.199 29.630 0.00 0.00 32.51 4.26
608 803 8.984891 TGAATTTGACCAAACTTTATATGCAG 57.015 30.769 0.00 0.00 32.51 4.41
609 804 8.034215 CCTGAATTTGACCAAACTTTATATGCA 58.966 33.333 0.00 0.00 32.51 3.96
610 805 8.034804 ACCTGAATTTGACCAAACTTTATATGC 58.965 33.333 0.00 0.00 32.51 3.14
611 806 9.927668 AACCTGAATTTGACCAAACTTTATATG 57.072 29.630 0.00 0.00 32.51 1.78
697 892 9.908152 CATACATTTCATTGTGCATCTGATAAT 57.092 29.630 0.00 0.00 0.00 1.28
698 893 8.905850 ACATACATTTCATTGTGCATCTGATAA 58.094 29.630 0.00 0.00 0.00 1.75
699 894 8.454570 ACATACATTTCATTGTGCATCTGATA 57.545 30.769 0.00 0.00 0.00 2.15
700 895 7.342769 ACATACATTTCATTGTGCATCTGAT 57.657 32.000 0.00 0.00 0.00 2.90
701 896 6.762702 ACATACATTTCATTGTGCATCTGA 57.237 33.333 0.00 0.00 0.00 3.27
702 897 7.030768 TGAACATACATTTCATTGTGCATCTG 58.969 34.615 0.00 0.00 0.00 2.90
703 898 7.160547 TGAACATACATTTCATTGTGCATCT 57.839 32.000 0.00 0.00 0.00 2.90
704 899 7.516155 GCATGAACATACATTTCATTGTGCATC 60.516 37.037 0.00 0.00 40.92 3.91
705 900 6.256975 GCATGAACATACATTTCATTGTGCAT 59.743 34.615 0.00 0.00 40.92 3.96
706 901 5.577554 GCATGAACATACATTTCATTGTGCA 59.422 36.000 0.00 0.00 40.92 4.57
707 902 5.808540 AGCATGAACATACATTTCATTGTGC 59.191 36.000 0.00 0.00 40.92 4.57
795 990 9.757859 CCGCGTATAAAATTTAGTTAAAGTCAA 57.242 29.630 4.92 0.00 0.00 3.18
796 991 9.149225 TCCGCGTATAAAATTTAGTTAAAGTCA 57.851 29.630 4.92 0.00 0.00 3.41
797 992 9.628983 CTCCGCGTATAAAATTTAGTTAAAGTC 57.371 33.333 4.92 0.00 0.00 3.01
798 993 9.154847 ACTCCGCGTATAAAATTTAGTTAAAGT 57.845 29.630 4.92 0.00 0.00 2.66
804 999 9.977762 CTTTTTACTCCGCGTATAAAATTTAGT 57.022 29.630 15.68 0.00 31.60 2.24
807 1002 9.896263 TTTCTTTTTACTCCGCGTATAAAATTT 57.104 25.926 15.68 0.00 31.60 1.82
808 1003 9.896263 TTTTCTTTTTACTCCGCGTATAAAATT 57.104 25.926 15.68 0.00 31.60 1.82
809 1004 9.333497 GTTTTCTTTTTACTCCGCGTATAAAAT 57.667 29.630 15.68 0.00 31.60 1.82
810 1005 7.530190 CGTTTTCTTTTTACTCCGCGTATAAAA 59.470 33.333 4.92 10.02 31.60 1.52
811 1006 7.008859 CGTTTTCTTTTTACTCCGCGTATAAA 58.991 34.615 4.92 3.97 31.29 1.40
812 1007 6.400940 CCGTTTTCTTTTTACTCCGCGTATAA 60.401 38.462 4.92 0.00 0.00 0.98
813 1008 5.062058 CCGTTTTCTTTTTACTCCGCGTATA 59.938 40.000 4.92 0.00 0.00 1.47
814 1009 4.143052 CCGTTTTCTTTTTACTCCGCGTAT 60.143 41.667 4.92 0.00 0.00 3.06
815 1010 3.184178 CCGTTTTCTTTTTACTCCGCGTA 59.816 43.478 4.92 0.00 0.00 4.42
816 1011 2.032636 CCGTTTTCTTTTTACTCCGCGT 60.033 45.455 4.92 0.00 0.00 6.01
817 1012 2.221517 TCCGTTTTCTTTTTACTCCGCG 59.778 45.455 0.00 0.00 0.00 6.46
818 1013 3.364664 CCTCCGTTTTCTTTTTACTCCGC 60.365 47.826 0.00 0.00 0.00 5.54
819 1014 4.060205 TCCTCCGTTTTCTTTTTACTCCG 58.940 43.478 0.00 0.00 0.00 4.63
820 1015 5.530171 ACTTCCTCCGTTTTCTTTTTACTCC 59.470 40.000 0.00 0.00 0.00 3.85
821 1016 6.615264 ACTTCCTCCGTTTTCTTTTTACTC 57.385 37.500 0.00 0.00 0.00 2.59
822 1017 6.201615 CGTACTTCCTCCGTTTTCTTTTTACT 59.798 38.462 0.00 0.00 0.00 2.24
823 1018 6.018751 ACGTACTTCCTCCGTTTTCTTTTTAC 60.019 38.462 0.00 0.00 0.00 2.01
824 1019 6.048509 ACGTACTTCCTCCGTTTTCTTTTTA 58.951 36.000 0.00 0.00 0.00 1.52
825 1020 4.877823 ACGTACTTCCTCCGTTTTCTTTTT 59.122 37.500 0.00 0.00 0.00 1.94
826 1021 4.445453 ACGTACTTCCTCCGTTTTCTTTT 58.555 39.130 0.00 0.00 0.00 2.27
827 1022 4.063998 ACGTACTTCCTCCGTTTTCTTT 57.936 40.909 0.00 0.00 0.00 2.52
828 1023 3.740631 ACGTACTTCCTCCGTTTTCTT 57.259 42.857 0.00 0.00 0.00 2.52
829 1024 4.853924 TTACGTACTTCCTCCGTTTTCT 57.146 40.909 0.00 0.00 36.12 2.52
830 1025 6.301861 CAATTTACGTACTTCCTCCGTTTTC 58.698 40.000 0.00 0.00 36.12 2.29
831 1026 5.179929 CCAATTTACGTACTTCCTCCGTTTT 59.820 40.000 0.00 0.00 36.12 2.43
832 1027 4.692155 CCAATTTACGTACTTCCTCCGTTT 59.308 41.667 0.00 0.00 36.12 3.60
833 1028 4.248058 CCAATTTACGTACTTCCTCCGTT 58.752 43.478 0.00 0.00 36.12 4.44
834 1029 3.259123 ACCAATTTACGTACTTCCTCCGT 59.741 43.478 0.00 0.00 38.53 4.69
835 1030 3.853475 ACCAATTTACGTACTTCCTCCG 58.147 45.455 0.00 0.00 0.00 4.63
836 1031 4.824289 TGACCAATTTACGTACTTCCTCC 58.176 43.478 0.00 0.00 0.00 4.30
837 1032 5.163884 GCTTGACCAATTTACGTACTTCCTC 60.164 44.000 0.00 0.00 0.00 3.71
838 1033 4.694037 GCTTGACCAATTTACGTACTTCCT 59.306 41.667 0.00 0.00 0.00 3.36
839 1034 4.453136 TGCTTGACCAATTTACGTACTTCC 59.547 41.667 0.00 0.00 0.00 3.46
840 1035 5.390567 CCTGCTTGACCAATTTACGTACTTC 60.391 44.000 0.00 0.00 0.00 3.01
846 1041 2.161609 GGACCTGCTTGACCAATTTACG 59.838 50.000 0.00 0.00 0.00 3.18
882 1077 1.676384 GCAGCTCCCACTCTCACTT 59.324 57.895 0.00 0.00 0.00 3.16
885 1080 3.385384 CCGCAGCTCCCACTCTCA 61.385 66.667 0.00 0.00 0.00 3.27
901 1096 2.876550 GCACATCCTTAAATACGTCCCC 59.123 50.000 0.00 0.00 0.00 4.81
915 1110 4.489771 CCCAGGTCCGGCACATCC 62.490 72.222 0.00 0.00 0.00 3.51
938 1133 4.518970 GTGAGTTTGGTCCTTTTGCAGATA 59.481 41.667 0.00 0.00 0.00 1.98
973 1183 2.261586 CCGGCGATCTCGATCTCCA 61.262 63.158 9.30 0.00 41.55 3.86
1143 1353 1.219393 GAGGACGGAAGGCAGAAGG 59.781 63.158 0.00 0.00 45.40 3.46
1145 1355 1.229209 AGGAGGACGGAAGGCAGAA 60.229 57.895 0.00 0.00 45.40 3.02
1177 1387 7.709149 AAAGATAAAAGATGGAACCTTGGAG 57.291 36.000 0.00 0.00 0.00 3.86
1195 1406 2.923605 GCGGCGAGCGGTAATAAAGATA 60.924 50.000 12.98 0.00 35.41 1.98
1237 1448 1.535202 GGAGATCCAGGGCTCCGAT 60.535 63.158 12.05 0.00 41.10 4.18
1238 1449 2.123251 GGAGATCCAGGGCTCCGA 60.123 66.667 12.05 0.00 41.10 4.55
1254 1465 2.352651 CACGTCTGCACTAAATCCATGG 59.647 50.000 4.97 4.97 0.00 3.66
1314 1556 4.380531 TGCAAAAACAAGACCAAACAACA 58.619 34.783 0.00 0.00 0.00 3.33
1318 1560 4.327087 CAGACTGCAAAAACAAGACCAAAC 59.673 41.667 0.00 0.00 0.00 2.93
1319 1561 4.219507 TCAGACTGCAAAAACAAGACCAAA 59.780 37.500 0.00 0.00 0.00 3.28
1320 1562 3.761218 TCAGACTGCAAAAACAAGACCAA 59.239 39.130 0.00 0.00 0.00 3.67
1322 1564 3.793465 GCTCAGACTGCAAAAACAAGACC 60.793 47.826 0.00 0.00 0.00 3.85
1323 1565 3.065925 AGCTCAGACTGCAAAAACAAGAC 59.934 43.478 0.00 0.00 0.00 3.01
1325 1567 3.705043 AGCTCAGACTGCAAAAACAAG 57.295 42.857 0.00 0.00 0.00 3.16
1327 1569 4.060900 CTCTAGCTCAGACTGCAAAAACA 58.939 43.478 0.00 0.00 0.00 2.83
1328 1570 4.310769 TCTCTAGCTCAGACTGCAAAAAC 58.689 43.478 0.00 0.00 0.00 2.43
1338 1580 7.508636 ACTTGATATTCCAATCTCTAGCTCAGA 59.491 37.037 0.00 0.00 0.00 3.27
1386 1628 2.610232 GCACCTAAACAATGGCAACTGG 60.610 50.000 0.00 0.00 37.61 4.00
1492 1737 6.549952 CATTAAGAGAATTCAGGACAGTTGC 58.450 40.000 8.44 0.00 0.00 4.17
1544 1790 5.670149 TTCGAATTTAACCTGTTACGCAA 57.330 34.783 0.00 0.00 0.00 4.85
1553 1799 3.435671 CGCTGACCTTTCGAATTTAACCT 59.564 43.478 0.00 0.00 0.00 3.50
1576 1822 0.753262 AATCGATGACCTTCCCCTCG 59.247 55.000 0.00 0.00 0.00 4.63
1608 1854 2.045536 GCAGAGGGGCAGTGGAAG 60.046 66.667 0.00 0.00 0.00 3.46
1609 1855 2.530151 AGCAGAGGGGCAGTGGAA 60.530 61.111 0.00 0.00 35.83 3.53
1611 1857 3.201707 AACAGCAGAGGGGCAGTGG 62.202 63.158 0.00 0.00 33.52 4.00
1616 1868 1.318158 CCATTGAACAGCAGAGGGGC 61.318 60.000 0.00 0.00 0.00 5.80
1657 1909 7.624974 GCTTCTGTACTGTTGTAGTCGTGTATA 60.625 40.741 0.00 0.00 40.89 1.47
1661 1916 3.669122 GCTTCTGTACTGTTGTAGTCGTG 59.331 47.826 0.00 0.00 40.89 4.35
1662 1917 3.608707 CGCTTCTGTACTGTTGTAGTCGT 60.609 47.826 0.00 0.00 40.89 4.34
1682 1944 6.915300 TGTTCCAATATTGTTATAATGCACGC 59.085 34.615 14.25 0.00 0.00 5.34
1756 2018 9.158233 TCCATGTAGTGTTTAGTATTAGCAAAC 57.842 33.333 0.00 0.00 33.70 2.93
1811 2172 6.321945 TGTCCATCATTTATTATGCAAGTGCT 59.678 34.615 4.69 0.00 42.66 4.40
1812 2173 6.506147 TGTCCATCATTTATTATGCAAGTGC 58.494 36.000 0.00 0.00 42.50 4.40
1860 2229 6.764308 ACAGAATCAAAGGACATACCAATG 57.236 37.500 0.00 0.00 42.04 2.82
1875 2244 1.338579 TGCACCGCACATACAGAATCA 60.339 47.619 0.00 0.00 31.71 2.57
1915 2284 3.107402 AGGTCATCCAGAAGCTCTACA 57.893 47.619 0.00 0.00 35.89 2.74
2045 2414 8.808529 CCGAGTAGACAACTTAATATGTTGAAG 58.191 37.037 21.02 1.05 45.27 3.02
2122 2499 3.266510 TGGCTGGTGCTCAAACTATAG 57.733 47.619 0.00 0.00 39.59 1.31
2127 2504 0.598419 GCTTTGGCTGGTGCTCAAAC 60.598 55.000 0.00 0.00 35.79 2.93
2128 2505 1.042003 TGCTTTGGCTGGTGCTCAAA 61.042 50.000 0.00 0.00 37.17 2.69
2214 2593 1.321474 TGAAAACTGCTCCAGCTTGG 58.679 50.000 0.00 0.00 42.66 3.61
2246 2625 3.456380 AACAGGTGCCACAAATATCCT 57.544 42.857 0.00 0.00 0.00 3.24
2293 2674 3.904965 TCTCCTGTGTTTATGGTGTGGTA 59.095 43.478 0.00 0.00 0.00 3.25
2310 2691 1.043673 GGTATGGCCGTGACTCTCCT 61.044 60.000 8.05 0.00 0.00 3.69
2317 2698 0.399376 ACTATGGGGTATGGCCGTGA 60.399 55.000 8.05 0.00 38.44 4.35
2320 2701 1.133915 ACAAACTATGGGGTATGGCCG 60.134 52.381 0.00 0.00 38.44 6.13
2326 2707 4.650972 AAGCAGAACAAACTATGGGGTA 57.349 40.909 0.00 0.00 0.00 3.69
2327 2708 3.525800 AAGCAGAACAAACTATGGGGT 57.474 42.857 0.00 0.00 0.00 4.95
2342 2728 5.180868 ACAACTGAGCAAGAAGAATAAGCAG 59.819 40.000 0.00 0.00 0.00 4.24
2370 2756 4.422073 TTTCCTGAGATGACACTTGTGT 57.578 40.909 6.06 6.06 0.00 3.72
2375 2761 3.607741 CTGCATTTCCTGAGATGACACT 58.392 45.455 2.13 0.00 0.00 3.55
2376 2762 2.097142 GCTGCATTTCCTGAGATGACAC 59.903 50.000 2.13 0.00 0.00 3.67
2414 2800 1.605712 GCGAGCACTGGGGATATACAC 60.606 57.143 0.00 0.00 0.00 2.90
2436 2822 6.272558 GGGGGTCCTTGTAATAAGACTATCAT 59.727 42.308 0.00 0.00 0.00 2.45
2443 2829 3.778629 GTCTGGGGGTCCTTGTAATAAGA 59.221 47.826 0.00 0.00 0.00 2.10
2461 2847 2.120232 GTATTGGCATCGTCGAGTCTG 58.880 52.381 0.00 0.00 0.00 3.51
2462 2848 1.749063 TGTATTGGCATCGTCGAGTCT 59.251 47.619 0.00 0.00 0.00 3.24
2463 2849 2.203800 TGTATTGGCATCGTCGAGTC 57.796 50.000 0.00 0.00 0.00 3.36
2464 2850 2.665649 TTGTATTGGCATCGTCGAGT 57.334 45.000 0.00 0.00 0.00 4.18
2465 2851 3.123050 TGATTGTATTGGCATCGTCGAG 58.877 45.455 0.00 0.00 0.00 4.04
2466 2852 3.172229 TGATTGTATTGGCATCGTCGA 57.828 42.857 0.00 0.00 0.00 4.20
2467 2853 3.802423 CATGATTGTATTGGCATCGTCG 58.198 45.455 0.00 0.00 0.00 5.12
2469 2855 2.950975 TGCATGATTGTATTGGCATCGT 59.049 40.909 0.00 0.00 0.00 3.73
2470 2856 3.561503 CTGCATGATTGTATTGGCATCG 58.438 45.455 0.00 0.00 0.00 3.84
2490 2876 7.040062 CGGAAGACTATCTCTTAATGATGTCCT 60.040 40.741 0.00 0.00 39.53 3.85
2501 2887 5.893897 ACGTTAACGGAAGACTATCTCTT 57.106 39.130 29.81 2.65 44.95 2.85
2555 2990 5.352284 AGAACAATCCAATACAGAGTAGCG 58.648 41.667 0.00 0.00 0.00 4.26
2579 3014 9.822185 ACAGCTCATATTCATTATATCGCAATA 57.178 29.630 0.00 0.00 30.52 1.90
2633 3069 9.825972 AACAAATTATCAGACAATCAGTAAACG 57.174 29.630 0.00 0.00 0.00 3.60
2659 3095 4.393062 GTGCTGCAGCTTTCTTATCTACAA 59.607 41.667 36.61 10.85 42.66 2.41
2723 3159 3.876914 CTGAAGTACTGAAAACTGCACCA 59.123 43.478 0.00 0.00 29.22 4.17
2724 3160 4.127171 TCTGAAGTACTGAAAACTGCACC 58.873 43.478 0.00 0.00 29.22 5.01
2729 3165 8.831550 GTTCAATTCTCTGAAGTACTGAAAACT 58.168 33.333 0.00 0.00 36.01 2.66
2789 3225 7.549488 GGTATGTTCAAAGTTCTGTACTAGCAT 59.451 37.037 0.00 0.00 35.54 3.79
2790 3226 6.872020 GGTATGTTCAAAGTTCTGTACTAGCA 59.128 38.462 0.00 0.00 35.54 3.49
2791 3227 6.872020 TGGTATGTTCAAAGTTCTGTACTAGC 59.128 38.462 0.00 0.00 35.54 3.42
2792 3228 7.063544 GCTGGTATGTTCAAAGTTCTGTACTAG 59.936 40.741 0.00 0.00 35.54 2.57
2794 3230 5.701290 GCTGGTATGTTCAAAGTTCTGTACT 59.299 40.000 0.00 0.00 39.32 2.73
2795 3231 5.106673 GGCTGGTATGTTCAAAGTTCTGTAC 60.107 44.000 0.00 0.00 0.00 2.90
2800 3236 5.351740 GTCTAGGCTGGTATGTTCAAAGTTC 59.648 44.000 0.00 0.00 0.00 3.01
2803 3239 5.091261 AGTCTAGGCTGGTATGTTCAAAG 57.909 43.478 0.00 0.00 0.00 2.77
2810 3246 5.599999 AGTACAAAGTCTAGGCTGGTATG 57.400 43.478 11.10 5.57 0.00 2.39
2827 3263 9.244799 CATATTACTTGTCGCTGATTTAGTACA 57.755 33.333 0.00 0.00 0.00 2.90
2828 3264 8.700644 CCATATTACTTGTCGCTGATTTAGTAC 58.299 37.037 0.00 0.00 0.00 2.73
2830 3266 7.497595 TCCATATTACTTGTCGCTGATTTAGT 58.502 34.615 0.00 0.00 0.00 2.24
2831 3267 7.946655 TCCATATTACTTGTCGCTGATTTAG 57.053 36.000 0.00 0.00 0.00 1.85
2832 3268 8.367911 AGATCCATATTACTTGTCGCTGATTTA 58.632 33.333 0.00 0.00 0.00 1.40
2833 3269 7.172190 CAGATCCATATTACTTGTCGCTGATTT 59.828 37.037 0.00 0.00 0.00 2.17
2834 3270 6.648310 CAGATCCATATTACTTGTCGCTGATT 59.352 38.462 0.00 0.00 0.00 2.57
2835 3271 6.015095 TCAGATCCATATTACTTGTCGCTGAT 60.015 38.462 0.00 0.00 0.00 2.90
2840 3306 5.243954 TCCCTCAGATCCATATTACTTGTCG 59.756 44.000 0.00 0.00 0.00 4.35
2858 3324 2.570302 GCCCAAGTTTACTACTCCCTCA 59.430 50.000 0.00 0.00 35.54 3.86
2861 3327 3.428413 TTGCCCAAGTTTACTACTCCC 57.572 47.619 0.00 0.00 35.54 4.30
2987 3497 0.179081 GAAGGACGAGCGCCCTTTAT 60.179 55.000 15.54 0.00 42.43 1.40
2992 3502 2.509561 GAAGAAGGACGAGCGCCC 60.510 66.667 2.29 0.00 0.00 6.13
3003 3513 8.336080 GTCAGTTACAAGGTTTTACTGAAGAAG 58.664 37.037 0.00 0.00 44.64 2.85
3030 3540 0.107606 ACACGCCCAACACACTGTTA 60.108 50.000 0.00 0.00 38.77 2.41
3091 3601 0.108138 GGCTACATCACAGCTCCGTT 60.108 55.000 0.00 0.00 39.09 4.44
3142 3652 3.815401 ACGGGAAAACAGAGTTCTTCATG 59.185 43.478 0.00 0.00 0.00 3.07
3152 3667 5.470777 CCTTACACAAATACGGGAAAACAGA 59.529 40.000 0.00 0.00 0.00 3.41
3153 3668 5.239963 ACCTTACACAAATACGGGAAAACAG 59.760 40.000 0.00 0.00 0.00 3.16
3160 3675 5.890424 ATTTGACCTTACACAAATACGGG 57.110 39.130 0.00 0.00 42.41 5.28
3163 3678 8.487176 CAAGCAAATTTGACCTTACACAAATAC 58.513 33.333 22.31 0.00 43.07 1.89
3171 3686 7.174426 ACCTACTACAAGCAAATTTGACCTTAC 59.826 37.037 22.31 2.82 0.00 2.34
3192 3707 3.818773 TCTTTGCCAAACTAAGCACCTAC 59.181 43.478 0.00 0.00 39.10 3.18
3252 3767 8.457238 AGCCAAGAAAGGTAATATCATCTTTC 57.543 34.615 3.66 3.66 42.98 2.62
3283 3798 8.028354 CACTTATTCAATAGCCAACACAATTCA 58.972 33.333 0.00 0.00 0.00 2.57
3342 3857 2.501223 TTCCTCCAGTAACCTGCGCG 62.501 60.000 0.00 0.00 37.38 6.86
3377 3892 4.096984 GGTAATGCCATCCAAGACAAGAAG 59.903 45.833 0.00 0.00 37.17 2.85
3384 3902 3.756082 AAAGGGTAATGCCATCCAAGA 57.244 42.857 0.00 0.00 39.65 3.02
3392 3910 7.640597 AAAATACTGTCTAAAGGGTAATGCC 57.359 36.000 0.00 0.00 0.00 4.40
3488 4010 5.008613 TGCCAACAACTTTACAGATCTTCAC 59.991 40.000 0.00 0.00 0.00 3.18
3489 4011 5.008613 GTGCCAACAACTTTACAGATCTTCA 59.991 40.000 0.00 0.00 0.00 3.02
3588 4111 3.553095 AAAGGGCCTGGCTCACGTC 62.553 63.158 22.77 1.03 0.00 4.34
4067 4596 1.151668 CGCACAAGTTGAGCTAGCTT 58.848 50.000 20.42 0.00 31.68 3.74
4069 4598 0.164647 CACGCACAAGTTGAGCTAGC 59.835 55.000 20.67 6.62 31.68 3.42
4070 4599 1.193203 CACACGCACAAGTTGAGCTAG 59.807 52.381 20.67 15.26 31.68 3.42
4071 4600 1.217001 CACACGCACAAGTTGAGCTA 58.783 50.000 20.67 0.00 31.68 3.32
4072 4601 2.016961 CACACGCACAAGTTGAGCT 58.983 52.632 20.67 7.40 31.68 4.09
4074 4603 1.009675 GGCACACGCACAAGTTGAG 60.010 57.895 10.54 2.31 41.24 3.02
4075 4604 1.308783 TTGGCACACGCACAAGTTGA 61.309 50.000 10.54 0.00 39.29 3.18
4076 4605 1.138459 TTGGCACACGCACAAGTTG 59.862 52.632 0.00 0.00 39.29 3.16
4077 4606 1.138671 GTTGGCACACGCACAAGTT 59.861 52.632 0.00 0.00 39.29 2.66
4078 4607 2.770589 GGTTGGCACACGCACAAGT 61.771 57.895 0.00 0.00 39.29 3.16
4079 4608 2.026014 GGTTGGCACACGCACAAG 59.974 61.111 0.00 0.00 39.29 3.16
4092 4716 1.008538 GCGCCTTGTCTGTTGGTTG 60.009 57.895 0.00 0.00 0.00 3.77
4113 4737 0.242017 GTGCACCTGCTTGGATCAAC 59.758 55.000 5.22 0.00 42.66 3.18
4126 5254 2.027625 GTACCAGTGAGCGTGCACC 61.028 63.158 12.15 4.10 39.59 5.01
4136 5264 1.321074 GGACGGAGGGAGTACCAGTG 61.321 65.000 0.00 0.00 43.89 3.66
4207 5335 7.094762 GGACAAAAAGGGTTGTATCTAGAACTG 60.095 40.741 0.00 0.00 41.78 3.16
4221 5349 3.777522 TCACCAAAATGGACAAAAAGGGT 59.222 39.130 2.85 0.00 40.96 4.34
4230 5358 6.362283 CGAAAATACTTGTCACCAAAATGGAC 59.638 38.462 2.85 0.00 40.96 4.02
4232 5360 5.633182 CCGAAAATACTTGTCACCAAAATGG 59.367 40.000 0.00 0.00 45.02 3.16
4240 5368 3.319755 TCCGTCCGAAAATACTTGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
4302 5430 6.586463 ACACGTATGACAAGTATCAGTTTCAG 59.414 38.462 0.00 0.00 30.46 3.02
4323 5451 8.820628 ATCACGATGAAATAACAATTTACACG 57.179 30.769 0.00 0.00 0.00 4.49
4343 5472 8.835798 TGAACAGCTATTTCAATACGGATCACG 61.836 40.741 7.35 0.00 38.10 4.35
4468 5597 4.958581 GGGTGAGATCAAGGATTCCAATTT 59.041 41.667 5.29 0.00 0.00 1.82
4478 6417 5.927281 ATTTCAAATGGGTGAGATCAAGG 57.073 39.130 0.00 0.00 0.00 3.61
4479 6418 7.093814 TGGTTATTTCAAATGGGTGAGATCAAG 60.094 37.037 0.00 0.00 0.00 3.02
4485 6424 5.982890 ACTGGTTATTTCAAATGGGTGAG 57.017 39.130 0.00 0.00 0.00 3.51
4536 6475 3.328505 GAAAGAAACCCGATGGACGTAA 58.671 45.455 0.00 0.00 40.78 3.18
4539 6478 0.719465 CGAAAGAAACCCGATGGACG 59.281 55.000 0.00 0.00 42.18 4.79
4540 6479 1.730612 GACGAAAGAAACCCGATGGAC 59.269 52.381 0.00 0.00 34.81 4.02
4542 6481 1.084289 GGACGAAAGAAACCCGATGG 58.916 55.000 0.00 0.00 37.80 3.51
4543 6482 1.463444 GTGGACGAAAGAAACCCGATG 59.537 52.381 0.00 0.00 0.00 3.84
4545 6484 0.249996 GGTGGACGAAAGAAACCCGA 60.250 55.000 0.00 0.00 0.00 5.14
4547 6486 1.607148 CAAGGTGGACGAAAGAAACCC 59.393 52.381 0.00 0.00 33.81 4.11
4548 6487 1.001706 GCAAGGTGGACGAAAGAAACC 60.002 52.381 0.00 0.00 0.00 3.27
4549 6488 1.947456 AGCAAGGTGGACGAAAGAAAC 59.053 47.619 0.00 0.00 0.00 2.78
4550 6489 2.218603 GAGCAAGGTGGACGAAAGAAA 58.781 47.619 0.00 0.00 0.00 2.52
4551 6490 1.872237 CGAGCAAGGTGGACGAAAGAA 60.872 52.381 0.00 0.00 0.00 2.52
4553 6492 0.319555 TCGAGCAAGGTGGACGAAAG 60.320 55.000 0.00 0.00 0.00 2.62
4583 9615 1.526464 GTTTGGGCGCATTGTTGAAAG 59.474 47.619 10.83 0.00 0.00 2.62
4584 9616 1.576356 GTTTGGGCGCATTGTTGAAA 58.424 45.000 10.83 0.00 0.00 2.69
4585 9617 0.249657 GGTTTGGGCGCATTGTTGAA 60.250 50.000 10.83 0.00 0.00 2.69
4586 9618 1.365633 GGTTTGGGCGCATTGTTGA 59.634 52.632 10.83 0.00 0.00 3.18
4588 9620 2.136878 TGGGTTTGGGCGCATTGTT 61.137 52.632 10.83 0.00 0.00 2.83
4589 9621 2.522923 TGGGTTTGGGCGCATTGT 60.523 55.556 10.83 0.00 0.00 2.71
4590 9622 2.048316 GTGGGTTTGGGCGCATTG 60.048 61.111 10.83 0.00 33.93 2.82
4591 9623 2.203625 AGTGGGTTTGGGCGCATT 60.204 55.556 10.83 0.00 33.93 3.56
4592 9624 2.990967 CAGTGGGTTTGGGCGCAT 60.991 61.111 10.83 0.00 33.93 4.73
4593 9625 3.723097 TTCAGTGGGTTTGGGCGCA 62.723 57.895 10.83 0.00 0.00 6.09
4599 9631 3.919216 TGTGTTGTTTTCAGTGGGTTTG 58.081 40.909 0.00 0.00 0.00 2.93
4600 9632 3.829601 TCTGTGTTGTTTTCAGTGGGTTT 59.170 39.130 0.00 0.00 0.00 3.27
4601 9633 3.426615 TCTGTGTTGTTTTCAGTGGGTT 58.573 40.909 0.00 0.00 0.00 4.11
4608 9640 4.099266 CCCTCCATTTCTGTGTTGTTTTCA 59.901 41.667 0.00 0.00 0.00 2.69
4613 9645 1.620822 GCCCTCCATTTCTGTGTTGT 58.379 50.000 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.