Multiple sequence alignment - TraesCS6A01G047500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G047500 chr6A 100.000 3185 0 0 1 3185 24032443 24029259 0.000000e+00 5882.0
1 TraesCS6A01G047500 chr6A 84.432 1471 152 44 785 2185 24048386 24049849 0.000000e+00 1376.0
2 TraesCS6A01G047500 chr6A 81.486 1750 234 53 518 2214 23952882 23951170 0.000000e+00 1354.0
3 TraesCS6A01G047500 chr6A 85.065 1299 153 19 899 2183 23963286 23962015 0.000000e+00 1286.0
4 TraesCS6A01G047500 chr6A 82.056 535 63 19 741 1249 23897062 23896535 2.940000e-115 425.0
5 TraesCS6A01G047500 chr6A 100.000 49 0 0 3137 3185 61140924 61140972 1.220000e-14 91.6
6 TraesCS6A01G047500 chr6A 100.000 49 0 0 3137 3185 188225256 188225304 1.220000e-14 91.6
7 TraesCS6A01G047500 chr6A 94.828 58 1 2 3129 3185 25260294 25260238 4.380000e-14 89.8
8 TraesCS6A01G047500 chr6A 100.000 31 0 0 2262 2292 24049937 24049967 1.230000e-04 58.4
9 TraesCS6A01G047500 chr6D 89.787 2389 130 46 7 2351 25881105 25878787 0.000000e+00 2955.0
10 TraesCS6A01G047500 chr6D 82.439 1714 218 48 544 2213 25828075 25826401 0.000000e+00 1421.0
11 TraesCS6A01G047500 chr6D 85.364 1346 152 27 899 2220 25852755 25851431 0.000000e+00 1352.0
12 TraesCS6A01G047500 chr6D 83.600 1000 124 32 1302 2287 25804757 25803784 0.000000e+00 902.0
13 TraesCS6A01G047500 chr6D 88.287 572 67 0 1614 2185 25915640 25916211 0.000000e+00 686.0
14 TraesCS6A01G047500 chr6D 82.353 833 95 28 785 1567 25914738 25915568 0.000000e+00 676.0
15 TraesCS6A01G047500 chr6D 79.289 647 85 30 637 1249 25805470 25804839 1.060000e-109 407.0
16 TraesCS6A01G047500 chr6D 89.091 55 3 2 2314 2365 62819971 62819917 7.370000e-07 65.8
17 TraesCS6A01G047500 chr6D 100.000 31 0 0 2262 2292 25916299 25916329 1.230000e-04 58.4
18 TraesCS6A01G047500 chr6B 95.075 934 43 3 1284 2214 42318492 42317559 0.000000e+00 1467.0
19 TraesCS6A01G047500 chr6B 83.824 1428 167 27 790 2185 42392817 42394212 0.000000e+00 1299.0
20 TraesCS6A01G047500 chr6B 82.521 1539 194 35 716 2213 42212288 42210784 0.000000e+00 1282.0
21 TraesCS6A01G047500 chr6B 83.275 1423 165 39 794 2183 42231872 42230490 0.000000e+00 1242.0
22 TraesCS6A01G047500 chr6B 86.975 476 51 4 2491 2957 42317299 42316826 2.810000e-145 525.0
23 TraesCS6A01G047500 chr6B 87.968 374 31 6 476 846 42319349 42318987 2.270000e-116 429.0
24 TraesCS6A01G047500 chr6B 86.614 381 41 7 888 1262 42318986 42318610 2.290000e-111 412.0
25 TraesCS6A01G047500 chr6B 91.852 135 10 1 3008 3141 42316822 42316688 1.510000e-43 187.0
26 TraesCS6A01G047500 chr6B 80.851 235 26 9 2219 2452 42317516 42317300 1.970000e-37 167.0
27 TraesCS6A01G047500 chr6B 87.121 132 16 1 2403 2534 42216443 42216313 7.120000e-32 148.0
28 TraesCS6A01G047500 chr7D 81.374 1208 174 40 1017 2183 579100367 579099170 0.000000e+00 937.0
29 TraesCS6A01G047500 chr7A 81.345 1190 180 32 1017 2185 670947233 670946065 0.000000e+00 929.0
30 TraesCS6A01G047500 chr7B 80.544 1213 173 46 1017 2185 643462231 643463424 0.000000e+00 874.0
31 TraesCS6A01G047500 chr7B 84.293 573 86 4 1615 2185 643295737 643295167 9.980000e-155 556.0
32 TraesCS6A01G047500 chr7B 84.397 564 84 4 1622 2183 643292159 643291598 4.640000e-153 551.0
33 TraesCS6A01G047500 chr2A 100.000 50 0 0 3136 3185 708012331 708012380 3.380000e-15 93.5
34 TraesCS6A01G047500 chr2A 93.333 60 3 1 3127 3185 457263134 457263193 1.570000e-13 87.9
35 TraesCS6A01G047500 chr4D 98.077 52 1 0 3134 3185 9542811 9542760 1.220000e-14 91.6
36 TraesCS6A01G047500 chr4D 82.667 75 13 0 8 82 1145004 1145078 2.050000e-07 67.6
37 TraesCS6A01G047500 chr1A 98.077 52 1 0 3134 3185 276827582 276827531 1.220000e-14 91.6
38 TraesCS6A01G047500 chr3D 96.296 54 2 0 3132 3185 8732297 8732350 4.380000e-14 89.8
39 TraesCS6A01G047500 chr5A 94.737 57 1 1 3129 3185 428051984 428052038 1.570000e-13 87.9
40 TraesCS6A01G047500 chr5A 100.000 38 0 0 2314 2351 395922699 395922662 1.590000e-08 71.3
41 TraesCS6A01G047500 chr1B 97.561 41 1 0 2311 2351 559338970 559339010 1.590000e-08 71.3
42 TraesCS6A01G047500 chr1B 97.500 40 1 0 2314 2353 546954033 546953994 5.700000e-08 69.4
43 TraesCS6A01G047500 chr5D 93.478 46 3 0 2313 2358 546906193 546906148 5.700000e-08 69.4
44 TraesCS6A01G047500 chr5D 93.617 47 1 2 2315 2360 549650090 549650135 5.700000e-08 69.4
45 TraesCS6A01G047500 chr4A 93.478 46 2 1 2316 2361 165711896 165711852 2.050000e-07 67.6
46 TraesCS6A01G047500 chr3B 90.196 51 4 1 2302 2351 52742943 52742893 7.370000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G047500 chr6A 24029259 24032443 3184 True 5882.000000 5882 100.000000 1 3185 1 chr6A.!!$R4 3184
1 TraesCS6A01G047500 chr6A 23951170 23952882 1712 True 1354.000000 1354 81.486000 518 2214 1 chr6A.!!$R2 1696
2 TraesCS6A01G047500 chr6A 23962015 23963286 1271 True 1286.000000 1286 85.065000 899 2183 1 chr6A.!!$R3 1284
3 TraesCS6A01G047500 chr6A 24048386 24049967 1581 False 717.200000 1376 92.216000 785 2292 2 chr6A.!!$F3 1507
4 TraesCS6A01G047500 chr6A 23896535 23897062 527 True 425.000000 425 82.056000 741 1249 1 chr6A.!!$R1 508
5 TraesCS6A01G047500 chr6D 25878787 25881105 2318 True 2955.000000 2955 89.787000 7 2351 1 chr6D.!!$R3 2344
6 TraesCS6A01G047500 chr6D 25826401 25828075 1674 True 1421.000000 1421 82.439000 544 2213 1 chr6D.!!$R1 1669
7 TraesCS6A01G047500 chr6D 25851431 25852755 1324 True 1352.000000 1352 85.364000 899 2220 1 chr6D.!!$R2 1321
8 TraesCS6A01G047500 chr6D 25803784 25805470 1686 True 654.500000 902 81.444500 637 2287 2 chr6D.!!$R5 1650
9 TraesCS6A01G047500 chr6D 25914738 25916329 1591 False 473.466667 686 90.213333 785 2292 3 chr6D.!!$F1 1507
10 TraesCS6A01G047500 chr6B 42392817 42394212 1395 False 1299.000000 1299 83.824000 790 2185 1 chr6B.!!$F1 1395
11 TraesCS6A01G047500 chr6B 42210784 42212288 1504 True 1282.000000 1282 82.521000 716 2213 1 chr6B.!!$R1 1497
12 TraesCS6A01G047500 chr6B 42230490 42231872 1382 True 1242.000000 1242 83.275000 794 2183 1 chr6B.!!$R3 1389
13 TraesCS6A01G047500 chr6B 42316688 42319349 2661 True 531.166667 1467 88.222500 476 3141 6 chr6B.!!$R4 2665
14 TraesCS6A01G047500 chr7D 579099170 579100367 1197 True 937.000000 937 81.374000 1017 2183 1 chr7D.!!$R1 1166
15 TraesCS6A01G047500 chr7A 670946065 670947233 1168 True 929.000000 929 81.345000 1017 2185 1 chr7A.!!$R1 1168
16 TraesCS6A01G047500 chr7B 643462231 643463424 1193 False 874.000000 874 80.544000 1017 2185 1 chr7B.!!$F1 1168
17 TraesCS6A01G047500 chr7B 643291598 643295737 4139 True 553.500000 556 84.345000 1615 2185 2 chr7B.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 321 0.246360 AAAAATACCAAGGCAGGCGC 59.754 50.0 0.0 0.0 37.44 6.53 F
1409 1601 0.106149 AAGACTGCCTTTCCGAACGT 59.894 50.0 0.0 0.0 0.00 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1424 1616 0.029567 CTGGTCGATCACCTCGTAGC 59.970 60.0 13.32 0.0 46.98 3.58 R
2661 4907 0.033504 TGAAGGGAGCTGACGAACAC 59.966 55.0 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.324512 TGAAATCTTGGGATATCAAACATGGG 59.675 38.462 4.83 0.00 0.00 4.00
58 59 3.050089 TGGGTGCCCAATCAACTTC 57.950 52.632 7.63 0.00 44.12 3.01
60 61 0.541764 GGGTGCCCAATCAACTTCCA 60.542 55.000 1.66 0.00 35.81 3.53
63 64 0.896923 TGCCCAATCAACTTCCATGC 59.103 50.000 0.00 0.00 0.00 4.06
72 73 4.844998 TCAACTTCCATGCGAAATTTCA 57.155 36.364 17.99 0.43 0.00 2.69
186 187 1.270094 CCGCGTCCCTTTGATATGCTA 60.270 52.381 4.92 0.00 0.00 3.49
187 188 2.612972 CCGCGTCCCTTTGATATGCTAT 60.613 50.000 4.92 0.00 0.00 2.97
202 203 4.897509 ATGCTATATACTCCTGCTTGCA 57.102 40.909 0.00 0.00 0.00 4.08
231 232 9.859427 CAAAGCAATCCTTATGTTTCTGAATTA 57.141 29.630 0.00 0.00 32.20 1.40
320 321 0.246360 AAAAATACCAAGGCAGGCGC 59.754 50.000 0.00 0.00 37.44 6.53
322 323 0.611896 AAATACCAAGGCAGGCGCTT 60.612 50.000 7.64 0.00 38.60 4.68
323 324 1.315257 AATACCAAGGCAGGCGCTTG 61.315 55.000 16.21 16.21 38.60 4.01
324 325 2.484287 ATACCAAGGCAGGCGCTTGT 62.484 55.000 21.36 2.18 38.60 3.16
342 353 6.578172 GCGCTTGTTTTGCAATTTCATTTATT 59.422 30.769 0.00 0.00 36.36 1.40
349 360 9.396938 GTTTTGCAATTTCATTTATTCAAAGGG 57.603 29.630 0.00 0.00 0.00 3.95
369 380 1.662026 GCGGTAAGCGTTTGTCCAAAG 60.662 52.381 0.00 0.00 35.41 2.77
442 453 6.213600 TGGAGCTAGAAAATGAGACCTTAACT 59.786 38.462 0.00 0.00 0.00 2.24
443 454 7.399191 TGGAGCTAGAAAATGAGACCTTAACTA 59.601 37.037 0.00 0.00 0.00 2.24
446 457 9.660180 AGCTAGAAAATGAGACCTTAACTAAAG 57.340 33.333 0.00 0.00 34.73 1.85
448 459 9.436957 CTAGAAAATGAGACCTTAACTAAAGCA 57.563 33.333 0.00 0.00 33.49 3.91
450 461 6.502136 AAATGAGACCTTAACTAAAGCAGC 57.498 37.500 0.00 0.00 33.49 5.25
451 462 3.585862 TGAGACCTTAACTAAAGCAGCG 58.414 45.455 0.00 0.00 33.49 5.18
470 481 1.401552 CGCCATGGGTTTACTCACATG 59.598 52.381 15.13 2.41 40.17 3.21
471 482 1.134946 GCCATGGGTTTACTCACATGC 59.865 52.381 15.13 0.00 39.39 4.06
472 483 2.445427 CCATGGGTTTACTCACATGCA 58.555 47.619 2.85 0.00 39.39 3.96
675 690 1.205893 GGAGATCTCTGACCACACACC 59.794 57.143 21.81 0.00 0.00 4.16
734 749 6.146673 TCGAAATGCTATCTGCTAATGACATG 59.853 38.462 0.00 0.00 43.37 3.21
747 775 6.430616 TGCTAATGACATGTGAACAAAGATGA 59.569 34.615 1.15 0.00 0.00 2.92
769 802 3.306472 TCAGTTTTTGGCACCTACCTT 57.694 42.857 0.00 0.00 0.00 3.50
770 803 3.637769 TCAGTTTTTGGCACCTACCTTT 58.362 40.909 0.00 0.00 0.00 3.11
772 805 5.202004 TCAGTTTTTGGCACCTACCTTTAA 58.798 37.500 0.00 0.00 0.00 1.52
783 816 1.859080 CTACCTTTAAGATGCGTCGGC 59.141 52.381 0.00 0.00 40.52 5.54
821 876 1.264288 CCAGAGAAAGAAACCACGTGC 59.736 52.381 10.91 0.00 0.00 5.34
972 1062 6.919721 AGCTTACAGTGAAAAACAAACTGAA 58.080 32.000 8.90 0.00 43.22 3.02
1222 1317 5.734855 TGACTGCTTTGTTCAAGTAAGTC 57.265 39.130 12.37 12.37 42.74 3.01
1264 1367 5.626543 GCAAACATAGTTATGCCGATTGATG 59.373 40.000 0.00 0.00 37.19 3.07
1402 1594 2.461416 GGCGAGAAGACTGCCTTTC 58.539 57.895 0.00 0.00 45.40 2.62
1403 1595 1.021920 GGCGAGAAGACTGCCTTTCC 61.022 60.000 0.00 0.00 45.40 3.13
1404 1596 1.355066 GCGAGAAGACTGCCTTTCCG 61.355 60.000 0.00 0.00 34.68 4.30
1405 1597 0.243907 CGAGAAGACTGCCTTTCCGA 59.756 55.000 0.00 0.00 34.68 4.55
1407 1599 2.070028 GAGAAGACTGCCTTTCCGAAC 58.930 52.381 0.00 0.00 34.68 3.95
1408 1600 0.790814 GAAGACTGCCTTTCCGAACG 59.209 55.000 0.00 0.00 34.68 3.95
1409 1601 0.106149 AAGACTGCCTTTCCGAACGT 59.894 50.000 0.00 0.00 0.00 3.99
1410 1602 0.600255 AGACTGCCTTTCCGAACGTG 60.600 55.000 0.00 0.00 0.00 4.49
1411 1603 0.599204 GACTGCCTTTCCGAACGTGA 60.599 55.000 0.00 0.00 0.00 4.35
1412 1604 0.179067 ACTGCCTTTCCGAACGTGAA 60.179 50.000 0.00 0.00 0.00 3.18
1413 1605 0.234884 CTGCCTTTCCGAACGTGAAC 59.765 55.000 0.00 0.00 0.00 3.18
1415 1607 0.511653 GCCTTTCCGAACGTGAACTC 59.488 55.000 0.00 0.00 0.00 3.01
1416 1608 0.782384 CCTTTCCGAACGTGAACTCG 59.218 55.000 0.41 0.41 34.83 4.18
1420 1612 2.844146 CGAACGTGAACTCGGTGC 59.156 61.111 0.00 0.00 34.94 5.01
1421 1613 2.844146 GAACGTGAACTCGGTGCG 59.156 61.111 0.00 0.00 34.94 5.34
1427 1619 3.766691 GAACTCGGTGCGGGGCTA 61.767 66.667 0.00 0.00 0.00 3.93
1428 1620 4.078516 AACTCGGTGCGGGGCTAC 62.079 66.667 0.00 0.00 0.00 3.58
1437 1629 2.728817 CGGGGCTACGAGGTGATC 59.271 66.667 0.00 0.00 35.47 2.92
1455 1647 3.810310 ATCGACCAGATCAAGAGGAAC 57.190 47.619 0.00 0.00 33.45 3.62
1456 1648 1.472878 TCGACCAGATCAAGAGGAACG 59.527 52.381 0.00 4.08 0.00 3.95
1457 1649 1.202582 CGACCAGATCAAGAGGAACGT 59.797 52.381 0.00 0.00 0.00 3.99
1459 1651 1.276421 ACCAGATCAAGAGGAACGTGG 59.724 52.381 0.00 0.00 0.00 4.94
1461 1653 2.417924 CCAGATCAAGAGGAACGTGGAG 60.418 54.545 0.00 0.00 0.00 3.86
1462 1654 1.205893 AGATCAAGAGGAACGTGGAGC 59.794 52.381 0.00 0.00 0.00 4.70
1463 1655 1.205893 GATCAAGAGGAACGTGGAGCT 59.794 52.381 0.00 0.00 0.00 4.09
1464 1656 0.318441 TCAAGAGGAACGTGGAGCTG 59.682 55.000 0.00 0.00 0.00 4.24
1465 1657 0.671781 CAAGAGGAACGTGGAGCTGG 60.672 60.000 0.00 0.00 0.00 4.85
1467 1659 3.959991 GAGGAACGTGGAGCTGGCC 62.960 68.421 0.00 0.00 0.00 5.36
1468 1660 4.021925 GGAACGTGGAGCTGGCCT 62.022 66.667 3.32 0.00 0.00 5.19
1469 1661 2.743928 GAACGTGGAGCTGGCCTG 60.744 66.667 3.32 4.26 0.00 4.85
1483 1675 3.849951 CCTGCCCTGGCGTCGTAT 61.850 66.667 3.32 0.00 45.51 3.06
1484 1676 2.279517 CTGCCCTGGCGTCGTATC 60.280 66.667 3.32 0.00 45.51 2.24
1485 1677 3.792053 CTGCCCTGGCGTCGTATCC 62.792 68.421 3.32 0.00 45.51 2.59
1486 1678 3.537874 GCCCTGGCGTCGTATCCT 61.538 66.667 0.00 0.00 0.00 3.24
1488 1680 2.279517 CCTGGCGTCGTATCCTGC 60.280 66.667 0.00 0.00 0.00 4.85
1489 1681 2.655364 CTGGCGTCGTATCCTGCG 60.655 66.667 0.00 0.00 0.00 5.18
1493 1685 4.246206 CGTCGTATCCTGCGCCGA 62.246 66.667 4.18 1.70 32.32 5.54
1494 1686 2.654404 GTCGTATCCTGCGCCGAC 60.654 66.667 16.54 16.54 42.22 4.79
1495 1687 3.135457 TCGTATCCTGCGCCGACA 61.135 61.111 4.18 0.00 0.00 4.35
1496 1688 2.027605 CGTATCCTGCGCCGACAT 59.972 61.111 4.18 0.00 0.00 3.06
1497 1689 2.016704 CGTATCCTGCGCCGACATC 61.017 63.158 4.18 0.00 0.00 3.06
1498 1690 1.067416 GTATCCTGCGCCGACATCA 59.933 57.895 4.18 0.00 0.00 3.07
1499 1691 1.067416 TATCCTGCGCCGACATCAC 59.933 57.895 4.18 0.00 0.00 3.06
1507 1699 4.873129 CCGACATCACCGCCCTCG 62.873 72.222 0.00 0.00 0.00 4.63
1509 1701 4.451150 GACATCACCGCCCTCGCA 62.451 66.667 0.00 0.00 34.03 5.10
1510 1702 4.457496 ACATCACCGCCCTCGCAG 62.457 66.667 0.00 0.00 34.03 5.18
1531 1723 2.434359 GGGACGGCGTCTTTCTGG 60.434 66.667 35.42 0.00 32.47 3.86
1532 1724 2.342648 GGACGGCGTCTTTCTGGT 59.657 61.111 35.42 0.00 32.47 4.00
1533 1725 2.027625 GGACGGCGTCTTTCTGGTG 61.028 63.158 35.42 0.00 32.47 4.17
1534 1726 2.665185 ACGGCGTCTTTCTGGTGC 60.665 61.111 6.77 0.00 0.00 5.01
1535 1727 3.777925 CGGCGTCTTTCTGGTGCG 61.778 66.667 0.00 0.00 0.00 5.34
1536 1728 2.665185 GGCGTCTTTCTGGTGCGT 60.665 61.111 0.00 0.00 0.00 5.24
1537 1729 1.373748 GGCGTCTTTCTGGTGCGTA 60.374 57.895 0.00 0.00 0.00 4.42
1538 1730 1.623973 GGCGTCTTTCTGGTGCGTAC 61.624 60.000 0.00 0.00 0.00 3.67
1539 1731 0.942410 GCGTCTTTCTGGTGCGTACA 60.942 55.000 5.86 0.00 0.00 2.90
1540 1732 1.493772 CGTCTTTCTGGTGCGTACAA 58.506 50.000 5.86 0.00 0.00 2.41
1541 1733 2.066262 CGTCTTTCTGGTGCGTACAAT 58.934 47.619 5.86 0.00 0.00 2.71
1542 1734 3.247442 CGTCTTTCTGGTGCGTACAATA 58.753 45.455 5.86 0.00 0.00 1.90
1543 1735 3.060363 CGTCTTTCTGGTGCGTACAATAC 59.940 47.826 5.86 0.00 0.00 1.89
1544 1736 3.991773 GTCTTTCTGGTGCGTACAATACA 59.008 43.478 5.86 0.00 0.00 2.29
1546 1738 5.121768 GTCTTTCTGGTGCGTACAATACAAT 59.878 40.000 5.86 0.00 0.00 2.71
1548 1740 6.311935 TCTTTCTGGTGCGTACAATACAATAC 59.688 38.462 5.86 0.00 0.00 1.89
1549 1741 4.106909 TCTGGTGCGTACAATACAATACG 58.893 43.478 5.86 0.00 45.45 3.06
1550 1742 4.106909 CTGGTGCGTACAATACAATACGA 58.893 43.478 5.86 0.00 45.51 3.43
1551 1743 4.684877 TGGTGCGTACAATACAATACGAT 58.315 39.130 5.86 0.00 45.51 3.73
1553 1745 4.741185 GGTGCGTACAATACAATACGATCA 59.259 41.667 5.86 0.00 45.51 2.92
1554 1746 5.232626 GGTGCGTACAATACAATACGATCAA 59.767 40.000 5.86 0.00 45.51 2.57
1557 1749 6.697892 TGCGTACAATACAATACGATCAATGA 59.302 34.615 7.91 0.00 45.51 2.57
1558 1750 7.001922 GCGTACAATACAATACGATCAATGAC 58.998 38.462 7.91 0.00 45.51 3.06
1559 1751 7.306341 GCGTACAATACAATACGATCAATGACA 60.306 37.037 7.91 0.00 45.51 3.58
1560 1752 8.207906 CGTACAATACAATACGATCAATGACAG 58.792 37.037 0.00 0.00 45.51 3.51
1561 1753 9.031360 GTACAATACAATACGATCAATGACAGT 57.969 33.333 0.00 0.00 0.00 3.55
1562 1754 7.909267 ACAATACAATACGATCAATGACAGTG 58.091 34.615 0.00 0.00 0.00 3.66
1563 1755 7.011389 ACAATACAATACGATCAATGACAGTGG 59.989 37.037 2.62 0.00 0.00 4.00
1564 1756 4.191544 ACAATACGATCAATGACAGTGGG 58.808 43.478 2.62 0.00 0.00 4.61
1565 1757 4.191544 CAATACGATCAATGACAGTGGGT 58.808 43.478 2.62 2.24 0.00 4.51
1566 1758 5.105106 ACAATACGATCAATGACAGTGGGTA 60.105 40.000 2.62 4.31 0.00 3.69
1569 1761 2.416836 CGATCAATGACAGTGGGTACGT 60.417 50.000 2.62 0.00 0.00 3.57
1570 1762 3.181494 CGATCAATGACAGTGGGTACGTA 60.181 47.826 2.62 0.00 0.00 3.57
1571 1763 3.861276 TCAATGACAGTGGGTACGTAG 57.139 47.619 2.62 0.00 0.00 3.51
1572 1764 2.494471 TCAATGACAGTGGGTACGTAGG 59.506 50.000 2.62 0.00 0.00 3.18
1574 1766 0.251474 TGACAGTGGGTACGTAGGCT 60.251 55.000 0.00 0.00 0.00 4.58
1575 1767 0.172803 GACAGTGGGTACGTAGGCTG 59.827 60.000 0.00 4.91 0.00 4.85
1576 1768 1.153628 CAGTGGGTACGTAGGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
1579 1771 2.202703 GGGTACGTAGGCTGCACG 60.203 66.667 10.47 10.47 44.80 5.34
1585 1777 2.813908 GTAGGCTGCACGTTCGGG 60.814 66.667 0.50 0.00 0.00 5.14
1586 1778 3.307906 TAGGCTGCACGTTCGGGT 61.308 61.111 0.50 0.00 0.00 5.28
1588 1780 4.025401 GGCTGCACGTTCGGGTTG 62.025 66.667 0.50 0.00 0.00 3.77
1589 1781 4.683334 GCTGCACGTTCGGGTTGC 62.683 66.667 0.00 0.00 0.00 4.17
1590 1782 2.972505 CTGCACGTTCGGGTTGCT 60.973 61.111 7.53 0.00 0.00 3.91
1591 1783 3.240606 CTGCACGTTCGGGTTGCTG 62.241 63.158 7.53 4.16 0.00 4.41
1593 1785 2.935955 CACGTTCGGGTTGCTGAC 59.064 61.111 0.00 0.00 0.00 3.51
1594 1786 1.594293 CACGTTCGGGTTGCTGACT 60.594 57.895 0.00 0.00 0.00 3.41
1595 1787 0.319211 CACGTTCGGGTTGCTGACTA 60.319 55.000 0.00 0.00 0.00 2.59
1596 1788 0.319297 ACGTTCGGGTTGCTGACTAC 60.319 55.000 0.00 0.00 0.00 2.73
1597 1789 1.342082 CGTTCGGGTTGCTGACTACG 61.342 60.000 0.00 0.00 0.00 3.51
1599 1791 1.068333 GTTCGGGTTGCTGACTACGTA 60.068 52.381 0.00 0.00 32.91 3.57
1600 1792 0.806868 TCGGGTTGCTGACTACGTAG 59.193 55.000 20.97 20.97 32.91 3.51
1602 1794 1.467035 CGGGTTGCTGACTACGTAGAC 60.467 57.143 28.74 22.37 0.00 2.59
1603 1795 1.817447 GGGTTGCTGACTACGTAGACT 59.183 52.381 28.74 7.56 0.00 3.24
1604 1796 2.415625 GGGTTGCTGACTACGTAGACTG 60.416 54.545 28.74 24.46 0.00 3.51
1605 1797 2.251893 GTTGCTGACTACGTAGACTGC 58.748 52.381 33.13 33.13 40.90 4.40
1608 1800 1.790838 GCTGACTACGTAGACTGCACG 60.791 57.143 34.02 18.84 44.80 5.34
1613 1805 3.750162 CGTAGACTGCACGTTCGG 58.250 61.111 0.00 0.00 34.74 4.30
1615 1807 1.288127 GTAGACTGCACGTTCGGGT 59.712 57.895 0.00 0.00 0.00 5.28
1618 1810 2.280592 ACTGCACGTTCGGGTTCC 60.281 61.111 0.00 0.00 0.00 3.62
1851 4050 0.685097 ACCACATCTACAACGGCACT 59.315 50.000 0.00 0.00 0.00 4.40
2037 4236 2.262915 CTCTTCAACGGCGGCTCT 59.737 61.111 13.24 0.00 0.00 4.09
2193 4399 0.587768 TCAACAGCTGACGCAACATG 59.412 50.000 23.35 6.03 39.10 3.21
2234 4478 8.601845 TCTACGTGTTACAGTGTTAAGTAGTA 57.398 34.615 18.13 10.15 33.09 1.82
2242 4487 9.577110 GTTACAGTGTTAAGTAGTATACATGCA 57.423 33.333 0.00 0.00 46.26 3.96
2295 4540 4.215613 AGAATAAGAGCCGTTTGGTTTCAC 59.784 41.667 0.00 0.00 37.67 3.18
2297 4542 1.757682 AGAGCCGTTTGGTTTCACAA 58.242 45.000 0.00 0.00 37.67 3.33
2309 4554 9.026074 CGTTTGGTTTCACAAAGTAATTTGTAT 57.974 29.630 19.82 0.00 42.69 2.29
2356 4601 5.916661 AAGCGTTTAGATCACTAGAAGGA 57.083 39.130 0.00 0.00 0.00 3.36
2358 4603 4.951094 AGCGTTTAGATCACTAGAAGGAGT 59.049 41.667 0.00 0.00 0.00 3.85
2359 4604 6.120905 AGCGTTTAGATCACTAGAAGGAGTA 58.879 40.000 0.00 0.00 0.00 2.59
2360 4605 6.773685 AGCGTTTAGATCACTAGAAGGAGTAT 59.226 38.462 0.00 0.00 0.00 2.12
2361 4606 7.937942 AGCGTTTAGATCACTAGAAGGAGTATA 59.062 37.037 0.00 0.00 0.00 1.47
2362 4607 8.732531 GCGTTTAGATCACTAGAAGGAGTATAT 58.267 37.037 0.00 0.00 0.00 0.86
2368 4613 8.333235 AGATCACTAGAAGGAGTATATACCTGG 58.667 40.741 9.32 4.00 36.56 4.45
2369 4614 6.791371 TCACTAGAAGGAGTATATACCTGGG 58.209 44.000 9.32 0.95 36.56 4.45
2370 4615 5.952947 CACTAGAAGGAGTATATACCTGGGG 59.047 48.000 9.32 0.00 36.56 4.96
2371 4616 3.792515 AGAAGGAGTATATACCTGGGGC 58.207 50.000 9.32 0.00 36.56 5.80
2372 4617 2.233305 AGGAGTATATACCTGGGGCG 57.767 55.000 9.32 0.00 34.99 6.13
2373 4618 1.192428 GGAGTATATACCTGGGGCGG 58.808 60.000 9.32 0.00 0.00 6.13
2374 4619 1.192428 GAGTATATACCTGGGGCGGG 58.808 60.000 9.32 0.00 35.68 6.13
2375 4620 0.908180 AGTATATACCTGGGGCGGGC 60.908 60.000 9.32 0.00 32.02 6.13
2376 4621 1.158944 TATATACCTGGGGCGGGCA 59.841 57.895 3.27 0.00 32.02 5.36
2377 4622 1.196104 TATATACCTGGGGCGGGCAC 61.196 60.000 3.27 0.00 32.02 5.01
2378 4623 3.868350 TATATACCTGGGGCGGGCACA 62.868 57.143 6.27 6.27 32.02 4.57
2411 4656 1.159184 TAACCGGACCCTCCACCTT 59.841 57.895 9.46 0.00 35.91 3.50
2433 4678 8.170730 ACCTTCAAGATTGTAAAATACCTCCTT 58.829 33.333 0.00 0.00 0.00 3.36
2452 4697 5.684704 TCCTTCATCATGTAATCTCCCAAC 58.315 41.667 0.00 0.00 0.00 3.77
2453 4698 4.823989 CCTTCATCATGTAATCTCCCAACC 59.176 45.833 0.00 0.00 0.00 3.77
2454 4699 5.398353 CCTTCATCATGTAATCTCCCAACCT 60.398 44.000 0.00 0.00 0.00 3.50
2455 4700 5.039920 TCATCATGTAATCTCCCAACCTG 57.960 43.478 0.00 0.00 0.00 4.00
2456 4701 3.281727 TCATGTAATCTCCCAACCTGC 57.718 47.619 0.00 0.00 0.00 4.85
2457 4702 2.092429 TCATGTAATCTCCCAACCTGCC 60.092 50.000 0.00 0.00 0.00 4.85
2458 4703 0.623723 TGTAATCTCCCAACCTGCCC 59.376 55.000 0.00 0.00 0.00 5.36
2459 4704 0.623723 GTAATCTCCCAACCTGCCCA 59.376 55.000 0.00 0.00 0.00 5.36
2460 4705 1.215423 GTAATCTCCCAACCTGCCCAT 59.785 52.381 0.00 0.00 0.00 4.00
2461 4706 1.607225 AATCTCCCAACCTGCCCATA 58.393 50.000 0.00 0.00 0.00 2.74
2462 4707 1.838611 ATCTCCCAACCTGCCCATAT 58.161 50.000 0.00 0.00 0.00 1.78
2463 4708 2.505672 TCTCCCAACCTGCCCATATA 57.494 50.000 0.00 0.00 0.00 0.86
2464 4709 3.004126 TCTCCCAACCTGCCCATATAT 57.996 47.619 0.00 0.00 0.00 0.86
2465 4710 2.644299 TCTCCCAACCTGCCCATATATG 59.356 50.000 5.68 5.68 0.00 1.78
2466 4711 1.075374 TCCCAACCTGCCCATATATGC 59.925 52.381 7.24 0.00 0.00 3.14
2467 4712 1.203038 CCCAACCTGCCCATATATGCA 60.203 52.381 7.24 2.50 35.86 3.96
2468 4713 2.596346 CCAACCTGCCCATATATGCAA 58.404 47.619 7.24 0.00 36.98 4.08
2469 4714 2.964464 CCAACCTGCCCATATATGCAAA 59.036 45.455 7.24 0.00 36.98 3.68
2470 4715 3.243839 CCAACCTGCCCATATATGCAAAC 60.244 47.826 7.24 0.00 36.98 2.93
2471 4716 2.597455 ACCTGCCCATATATGCAAACC 58.403 47.619 7.24 0.00 36.98 3.27
2472 4717 1.541147 CCTGCCCATATATGCAAACCG 59.459 52.381 7.24 0.00 36.98 4.44
2473 4718 2.229792 CTGCCCATATATGCAAACCGT 58.770 47.619 7.24 0.00 36.98 4.83
2474 4719 3.407698 CTGCCCATATATGCAAACCGTA 58.592 45.455 7.24 0.00 36.98 4.02
2475 4720 3.142951 TGCCCATATATGCAAACCGTAC 58.857 45.455 7.24 0.00 33.87 3.67
2476 4721 3.181449 TGCCCATATATGCAAACCGTACT 60.181 43.478 7.24 0.00 33.87 2.73
2477 4722 4.040584 TGCCCATATATGCAAACCGTACTA 59.959 41.667 7.24 0.00 33.87 1.82
2478 4723 5.183228 GCCCATATATGCAAACCGTACTAT 58.817 41.667 7.24 0.00 0.00 2.12
2479 4724 6.070710 TGCCCATATATGCAAACCGTACTATA 60.071 38.462 7.24 0.00 33.87 1.31
2480 4725 6.819649 GCCCATATATGCAAACCGTACTATAA 59.180 38.462 7.24 0.00 0.00 0.98
2481 4726 7.497909 GCCCATATATGCAAACCGTACTATAAT 59.502 37.037 7.24 0.00 0.00 1.28
2511 4756 8.863872 ATAGGGTATATGGTCTTTTATGCAAC 57.136 34.615 0.00 0.00 0.00 4.17
2529 4774 3.439129 GCAACATCTAAGGGTTGTGTACC 59.561 47.826 0.00 0.00 44.70 3.34
2578 4824 4.494350 TGCAAACATTCTTCTTCTGCTC 57.506 40.909 0.00 0.00 0.00 4.26
2579 4825 3.254166 TGCAAACATTCTTCTTCTGCTCC 59.746 43.478 0.00 0.00 0.00 4.70
2581 4827 4.615452 GCAAACATTCTTCTTCTGCTCCAG 60.615 45.833 0.00 0.00 0.00 3.86
2610 4856 1.577328 GAGCCGGTTGATGTGTGGTG 61.577 60.000 1.90 0.00 0.00 4.17
2661 4907 2.165030 GTGGCTTCACCTTCATGATTGG 59.835 50.000 12.18 12.18 40.22 3.16
2674 4920 1.795768 TGATTGGTGTTCGTCAGCTC 58.204 50.000 11.90 5.16 43.97 4.09
2706 4952 0.373716 GAATCGCATCCGTGTGGTTC 59.626 55.000 0.00 0.00 45.52 3.62
2707 4953 0.321210 AATCGCATCCGTGTGGTTCA 60.321 50.000 0.00 0.00 34.13 3.18
2710 4956 1.875963 GCATCCGTGTGGTTCAAGG 59.124 57.895 0.00 0.00 44.94 3.61
2734 4980 1.683385 GCCCTCCATGTTTTGATAGCC 59.317 52.381 0.00 0.00 0.00 3.93
2745 4991 6.134535 TGTTTTGATAGCCCTTCTTTCCTA 57.865 37.500 0.00 0.00 0.00 2.94
2746 4992 6.731467 TGTTTTGATAGCCCTTCTTTCCTAT 58.269 36.000 0.00 0.00 0.00 2.57
2750 4996 6.575244 TGATAGCCCTTCTTTCCTATTTCA 57.425 37.500 0.00 0.00 0.00 2.69
2753 4999 5.456921 AGCCCTTCTTTCCTATTTCATGA 57.543 39.130 0.00 0.00 0.00 3.07
2755 5001 5.832060 AGCCCTTCTTTCCTATTTCATGATG 59.168 40.000 0.00 0.00 0.00 3.07
2759 5005 4.780815 TCTTTCCTATTTCATGATGGCGT 58.219 39.130 0.00 0.00 0.00 5.68
2763 5009 2.476619 CCTATTTCATGATGGCGTCGAC 59.523 50.000 5.18 5.18 0.00 4.20
2764 5010 1.299541 ATTTCATGATGGCGTCGACC 58.700 50.000 10.58 2.55 0.00 4.79
2767 5013 3.080765 ATGATGGCGTCGACCCCA 61.081 61.111 23.49 23.49 35.21 4.96
2814 5060 0.974383 CAAAGGTACCTCTGGTCGGT 59.026 55.000 16.64 0.00 37.09 4.69
2823 5069 1.204941 CCTCTGGTCGGTGTTAGAAGG 59.795 57.143 0.00 0.00 0.00 3.46
2824 5070 0.606604 TCTGGTCGGTGTTAGAAGGC 59.393 55.000 0.00 0.00 0.00 4.35
2837 5083 4.962362 TGTTAGAAGGCTCTCCATGATGTA 59.038 41.667 0.00 0.00 32.70 2.29
2838 5084 5.069648 TGTTAGAAGGCTCTCCATGATGTAG 59.930 44.000 0.00 0.00 32.70 2.74
2841 5087 0.036022 GGCTCTCCATGATGTAGGCC 59.964 60.000 0.00 0.00 0.00 5.19
2842 5088 0.036022 GCTCTCCATGATGTAGGCCC 59.964 60.000 0.00 0.00 0.00 5.80
2844 5090 0.398522 TCTCCATGATGTAGGCCCGT 60.399 55.000 0.00 0.00 0.00 5.28
2849 5095 4.944372 GATGTAGGCCCGTCCGCG 62.944 72.222 0.00 0.00 40.77 6.46
2869 5123 4.410492 CGTAGCAAGCATGTTTCTCTTT 57.590 40.909 0.00 0.00 0.00 2.52
2876 5130 5.218139 CAAGCATGTTTCTCTTTGAAGGTC 58.782 41.667 0.00 0.00 35.89 3.85
2892 5146 1.956170 GTCGGAGTGTGTGCCACAG 60.956 63.158 0.00 0.00 45.43 3.66
2894 5148 2.281761 GGAGTGTGTGCCACAGGG 60.282 66.667 0.00 0.00 45.43 4.45
2957 5211 7.384660 TGTCTGAATTTGCAATTTCGCTAAATT 59.615 29.630 22.38 3.24 44.35 1.82
2970 5224 8.679288 ATTTCGCTAAATTGAATTTGTGAGAG 57.321 30.769 13.08 5.11 30.98 3.20
2971 5225 7.433708 TTCGCTAAATTGAATTTGTGAGAGA 57.566 32.000 13.08 7.21 33.82 3.10
2972 5226 7.433708 TCGCTAAATTGAATTTGTGAGAGAA 57.566 32.000 13.08 0.00 33.82 2.87
2973 5227 7.870826 TCGCTAAATTGAATTTGTGAGAGAAA 58.129 30.769 13.08 0.00 33.82 2.52
2974 5228 8.017373 TCGCTAAATTGAATTTGTGAGAGAAAG 58.983 33.333 13.08 0.91 33.82 2.62
2975 5229 8.017373 CGCTAAATTGAATTTGTGAGAGAAAGA 58.983 33.333 13.08 0.00 33.82 2.52
2976 5230 9.683069 GCTAAATTGAATTTGTGAGAGAAAGAA 57.317 29.630 13.08 0.00 33.82 2.52
2979 5233 9.962783 AAATTGAATTTGTGAGAGAAAGAAGAG 57.037 29.630 1.78 0.00 0.00 2.85
2980 5234 6.551385 TGAATTTGTGAGAGAAAGAAGAGC 57.449 37.500 0.00 0.00 0.00 4.09
2981 5235 5.178252 TGAATTTGTGAGAGAAAGAAGAGCG 59.822 40.000 0.00 0.00 0.00 5.03
2982 5236 4.322080 TTTGTGAGAGAAAGAAGAGCGA 57.678 40.909 0.00 0.00 0.00 4.93
2983 5237 3.567576 TGTGAGAGAAAGAAGAGCGAG 57.432 47.619 0.00 0.00 0.00 5.03
2984 5238 2.230025 TGTGAGAGAAAGAAGAGCGAGG 59.770 50.000 0.00 0.00 0.00 4.63
2985 5239 2.230266 GTGAGAGAAAGAAGAGCGAGGT 59.770 50.000 0.00 0.00 0.00 3.85
2986 5240 2.230025 TGAGAGAAAGAAGAGCGAGGTG 59.770 50.000 0.00 0.00 0.00 4.00
2987 5241 2.490115 GAGAGAAAGAAGAGCGAGGTGA 59.510 50.000 0.00 0.00 0.00 4.02
2988 5242 2.491693 AGAGAAAGAAGAGCGAGGTGAG 59.508 50.000 0.00 0.00 0.00 3.51
2989 5243 1.548269 AGAAAGAAGAGCGAGGTGAGG 59.452 52.381 0.00 0.00 0.00 3.86
2990 5244 0.036858 AAAGAAGAGCGAGGTGAGGC 60.037 55.000 0.00 0.00 0.00 4.70
2991 5245 2.202676 GAAGAGCGAGGTGAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
2992 5246 3.708220 GAAGAGCGAGGTGAGGCGG 62.708 68.421 0.00 0.00 0.00 6.13
2993 5247 4.742649 AGAGCGAGGTGAGGCGGA 62.743 66.667 0.00 0.00 0.00 5.54
2994 5248 4.200283 GAGCGAGGTGAGGCGGAG 62.200 72.222 0.00 0.00 0.00 4.63
3069 5323 4.899239 CCGGAGCCGCTGATGTCC 62.899 72.222 0.00 0.00 38.24 4.02
3082 5336 2.579684 GATGTCCTGGTGGCGAGTCC 62.580 65.000 0.00 0.00 0.00 3.85
3097 5351 0.113776 AGTCCGAGGGTTGACCAGTA 59.886 55.000 2.12 0.00 43.89 2.74
3101 5355 1.595357 GAGGGTTGACCAGTACGGG 59.405 63.158 10.83 10.83 43.89 5.28
3105 5360 1.670083 GTTGACCAGTACGGGTGGC 60.670 63.158 23.11 9.57 42.53 5.01
3129 5384 6.305638 GCAGCTTTTAGAATAAGAACCGTTTG 59.694 38.462 0.00 0.00 0.00 2.93
3146 5401 6.221858 CCGTTTGGTTCAAATAATTGTTGG 57.778 37.500 4.43 0.00 35.74 3.77
3147 5402 5.178438 CCGTTTGGTTCAAATAATTGTTGGG 59.822 40.000 4.43 0.00 35.74 4.12
3148 5403 5.178438 CGTTTGGTTCAAATAATTGTTGGGG 59.822 40.000 4.43 0.00 35.74 4.96
3149 5404 6.292150 GTTTGGTTCAAATAATTGTTGGGGA 58.708 36.000 4.43 0.00 35.74 4.81
3150 5405 6.694445 TTGGTTCAAATAATTGTTGGGGAT 57.306 33.333 4.43 0.00 37.79 3.85
3151 5406 6.293004 TGGTTCAAATAATTGTTGGGGATC 57.707 37.500 4.43 0.00 37.79 3.36
3152 5407 5.105554 TGGTTCAAATAATTGTTGGGGATCG 60.106 40.000 4.43 0.00 37.79 3.69
3153 5408 5.105513 GGTTCAAATAATTGTTGGGGATCGT 60.106 40.000 4.43 0.00 37.79 3.73
3154 5409 6.095720 GGTTCAAATAATTGTTGGGGATCGTA 59.904 38.462 4.43 0.00 37.79 3.43
3155 5410 6.935741 TCAAATAATTGTTGGGGATCGTAG 57.064 37.500 4.43 0.00 37.79 3.51
3156 5411 5.298276 TCAAATAATTGTTGGGGATCGTAGC 59.702 40.000 4.43 0.00 37.79 3.58
3157 5412 2.799126 AATTGTTGGGGATCGTAGCA 57.201 45.000 0.00 0.00 0.00 3.49
3158 5413 2.332063 ATTGTTGGGGATCGTAGCAG 57.668 50.000 0.00 0.00 0.00 4.24
3159 5414 1.271856 TTGTTGGGGATCGTAGCAGA 58.728 50.000 0.00 0.00 0.00 4.26
3160 5415 1.271856 TGTTGGGGATCGTAGCAGAA 58.728 50.000 0.00 0.00 0.00 3.02
3161 5416 1.626321 TGTTGGGGATCGTAGCAGAAA 59.374 47.619 0.00 0.00 0.00 2.52
3162 5417 2.238646 TGTTGGGGATCGTAGCAGAAAT 59.761 45.455 0.00 0.00 0.00 2.17
3163 5418 3.279434 GTTGGGGATCGTAGCAGAAATT 58.721 45.455 0.00 0.00 0.00 1.82
3164 5419 3.644966 TGGGGATCGTAGCAGAAATTT 57.355 42.857 0.00 0.00 0.00 1.82
3165 5420 4.764050 TGGGGATCGTAGCAGAAATTTA 57.236 40.909 0.00 0.00 0.00 1.40
3166 5421 5.105567 TGGGGATCGTAGCAGAAATTTAA 57.894 39.130 0.00 0.00 0.00 1.52
3167 5422 5.502079 TGGGGATCGTAGCAGAAATTTAAA 58.498 37.500 0.00 0.00 0.00 1.52
3168 5423 5.946972 TGGGGATCGTAGCAGAAATTTAAAA 59.053 36.000 0.00 0.00 0.00 1.52
3169 5424 6.605594 TGGGGATCGTAGCAGAAATTTAAAAT 59.394 34.615 0.00 0.00 0.00 1.82
3170 5425 7.123547 TGGGGATCGTAGCAGAAATTTAAAATT 59.876 33.333 0.00 0.00 0.00 1.82
3171 5426 7.979537 GGGGATCGTAGCAGAAATTTAAAATTT 59.020 33.333 0.00 0.00 0.00 1.82
3172 5427 9.366216 GGGATCGTAGCAGAAATTTAAAATTTT 57.634 29.630 8.75 8.75 0.00 1.82
3179 5434 8.810652 AGCAGAAATTTAAAATTTTCTACGCA 57.189 26.923 18.89 0.00 39.53 5.24
3180 5435 9.423061 AGCAGAAATTTAAAATTTTCTACGCAT 57.577 25.926 18.89 9.01 39.53 4.73
3181 5436 9.675553 GCAGAAATTTAAAATTTTCTACGCATC 57.324 29.630 13.75 0.00 39.53 3.91
3184 5439 9.952341 GAAATTTAAAATTTTCTACGCATCACC 57.048 29.630 6.72 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.431249 CCATGTTTGATATCCCAAGATTTCAG 58.569 38.462 0.00 0.00 40.25 3.02
43 44 1.404583 GCATGGAAGTTGATTGGGCAC 60.405 52.381 0.00 0.00 0.00 5.01
53 54 5.389859 TCATGAAATTTCGCATGGAAGTT 57.610 34.783 13.34 0.00 41.60 2.66
120 121 6.379703 CACCCCCTGTATGAACATTAAATTCA 59.620 38.462 7.70 7.70 40.25 2.57
121 122 6.183360 CCACCCCCTGTATGAACATTAAATTC 60.183 42.308 0.00 0.00 34.37 2.17
186 187 3.931907 TGGTTGCAAGCAGGAGTATAT 57.068 42.857 26.54 0.00 31.91 0.86
187 188 3.712016 TTGGTTGCAAGCAGGAGTATA 57.288 42.857 28.19 11.69 37.74 1.47
202 203 6.267471 TCAGAAACATAAGGATTGCTTTGGTT 59.733 34.615 0.00 0.03 0.00 3.67
303 304 0.611896 AAGCGCCTGCCTTGGTATTT 60.612 50.000 2.29 0.00 44.31 1.40
319 320 9.448294 TTGAATAAATGAAATTGCAAAACAAGC 57.552 25.926 1.71 0.00 42.87 4.01
322 323 9.947669 CCTTTGAATAAATGAAATTGCAAAACA 57.052 25.926 1.71 4.58 36.10 2.83
323 324 9.396938 CCCTTTGAATAAATGAAATTGCAAAAC 57.603 29.630 1.71 0.00 36.10 2.43
324 325 8.081025 GCCCTTTGAATAAATGAAATTGCAAAA 58.919 29.630 1.71 0.00 36.10 2.44
342 353 0.535553 AAACGCTTACCGCCCTTTGA 60.536 50.000 0.00 0.00 41.76 2.69
349 360 0.308376 TTTGGACAAACGCTTACCGC 59.692 50.000 0.00 0.00 41.76 5.68
369 380 1.065998 TGTCGTGTTGGTAATAGGCCC 60.066 52.381 0.00 0.00 0.00 5.80
442 453 0.897863 AAACCCATGGCGCTGCTTTA 60.898 50.000 6.09 0.00 0.00 1.85
443 454 0.897863 TAAACCCATGGCGCTGCTTT 60.898 50.000 6.09 1.92 0.00 3.51
446 457 1.993369 GAGTAAACCCATGGCGCTGC 61.993 60.000 6.09 0.00 0.00 5.25
448 459 0.676782 GTGAGTAAACCCATGGCGCT 60.677 55.000 6.09 0.00 0.00 5.92
450 461 1.401552 CATGTGAGTAAACCCATGGCG 59.598 52.381 6.09 2.02 32.87 5.69
451 462 1.134946 GCATGTGAGTAAACCCATGGC 59.865 52.381 6.09 0.00 36.16 4.40
655 669 1.205893 GGTGTGTGGTCAGAGATCTCC 59.794 57.143 19.30 5.14 0.00 3.71
663 677 3.866883 AAAAAGTTGGTGTGTGGTCAG 57.133 42.857 0.00 0.00 0.00 3.51
721 736 6.245115 TCTTTGTTCACATGTCATTAGCAG 57.755 37.500 0.00 0.00 0.00 4.24
734 749 7.517259 GCCAAAAACTGATTCATCTTTGTTCAC 60.517 37.037 11.32 0.00 0.00 3.18
747 775 3.844640 AGGTAGGTGCCAAAAACTGATT 58.155 40.909 0.00 0.00 0.00 2.57
783 816 1.411089 GTTGACTAAGTGCGACGCG 59.589 57.895 16.14 3.53 0.00 6.01
791 846 6.056236 GGTTTCTTTCTCTGGTTGACTAAGT 58.944 40.000 0.00 0.00 0.00 2.24
821 876 5.977129 GGTTGTGGAAAAGTATGACAAGTTG 59.023 40.000 0.00 0.00 0.00 3.16
966 1056 5.411361 TGTGTATACGTACGTAGGTTCAGTT 59.589 40.000 29.65 15.06 33.77 3.16
972 1062 5.353956 TCACAATGTGTATACGTACGTAGGT 59.646 40.000 29.65 22.91 34.79 3.08
1279 1382 8.178313 ACCTTCTCCGTGAAAAGAAAATAAAT 57.822 30.769 0.00 0.00 33.79 1.40
1280 1383 7.283580 TGACCTTCTCCGTGAAAAGAAAATAAA 59.716 33.333 0.00 0.00 33.79 1.40
1281 1384 6.768861 TGACCTTCTCCGTGAAAAGAAAATAA 59.231 34.615 0.00 0.00 33.79 1.40
1298 1490 2.236395 CCACCGTTAATCCTGACCTTCT 59.764 50.000 0.00 0.00 0.00 2.85
1403 1595 2.844146 GCACCGAGTTCACGTTCG 59.156 61.111 0.41 0.41 36.62 3.95
1404 1596 2.654912 CCGCACCGAGTTCACGTTC 61.655 63.158 0.00 0.00 0.00 3.95
1405 1597 2.660552 CCGCACCGAGTTCACGTT 60.661 61.111 0.00 0.00 0.00 3.99
1410 1602 3.766691 TAGCCCCGCACCGAGTTC 61.767 66.667 0.00 0.00 0.00 3.01
1411 1603 4.078516 GTAGCCCCGCACCGAGTT 62.079 66.667 0.00 0.00 0.00 3.01
1419 1611 3.501458 GATCACCTCGTAGCCCCGC 62.501 68.421 0.00 0.00 0.00 6.13
1420 1612 2.728817 GATCACCTCGTAGCCCCG 59.271 66.667 0.00 0.00 0.00 5.73
1421 1613 2.728817 CGATCACCTCGTAGCCCC 59.271 66.667 0.00 0.00 42.56 5.80
1424 1616 0.029567 CTGGTCGATCACCTCGTAGC 59.970 60.000 13.32 0.00 46.98 3.58
1425 1617 1.664873 TCTGGTCGATCACCTCGTAG 58.335 55.000 13.32 5.10 46.98 3.51
1427 1619 1.025812 GATCTGGTCGATCACCTCGT 58.974 55.000 13.32 2.46 46.98 4.18
1428 1620 3.855630 GATCTGGTCGATCACCTCG 57.144 57.895 13.32 6.79 46.98 4.63
1435 1627 2.099921 CGTTCCTCTTGATCTGGTCGAT 59.900 50.000 0.00 0.00 34.25 3.59
1437 1629 1.202582 ACGTTCCTCTTGATCTGGTCG 59.797 52.381 0.00 4.49 0.00 4.79
1438 1630 2.611518 CACGTTCCTCTTGATCTGGTC 58.388 52.381 0.00 0.00 0.00 4.02
1440 1632 1.550524 TCCACGTTCCTCTTGATCTGG 59.449 52.381 0.00 0.00 0.00 3.86
1441 1633 2.886081 CTCCACGTTCCTCTTGATCTG 58.114 52.381 0.00 0.00 0.00 2.90
1442 1634 1.205893 GCTCCACGTTCCTCTTGATCT 59.794 52.381 0.00 0.00 0.00 2.75
1443 1635 1.205893 AGCTCCACGTTCCTCTTGATC 59.794 52.381 0.00 0.00 0.00 2.92
1445 1637 0.318441 CAGCTCCACGTTCCTCTTGA 59.682 55.000 0.00 0.00 0.00 3.02
1446 1638 0.671781 CCAGCTCCACGTTCCTCTTG 60.672 60.000 0.00 0.00 0.00 3.02
1449 1641 2.435059 GCCAGCTCCACGTTCCTC 60.435 66.667 0.00 0.00 0.00 3.71
1452 1644 2.743928 CAGGCCAGCTCCACGTTC 60.744 66.667 5.01 0.00 0.00 3.95
1467 1659 2.279517 GATACGACGCCAGGGCAG 60.280 66.667 11.42 5.91 42.06 4.85
1468 1660 3.845259 GGATACGACGCCAGGGCA 61.845 66.667 11.42 0.00 42.06 5.36
1469 1661 3.537874 AGGATACGACGCCAGGGC 61.538 66.667 0.00 0.00 46.39 5.19
1470 1662 2.417516 CAGGATACGACGCCAGGG 59.582 66.667 0.00 0.00 46.39 4.45
1471 1663 2.279517 GCAGGATACGACGCCAGG 60.280 66.667 0.00 0.00 46.39 4.45
1477 1669 2.654404 GTCGGCGCAGGATACGAC 60.654 66.667 16.54 16.54 46.89 4.34
1478 1670 2.402282 GATGTCGGCGCAGGATACGA 62.402 60.000 10.83 4.63 46.39 3.43
1479 1671 2.016704 GATGTCGGCGCAGGATACG 61.017 63.158 10.83 1.64 46.39 3.06
1480 1672 1.067416 TGATGTCGGCGCAGGATAC 59.933 57.895 10.83 0.00 0.00 2.24
1483 1675 4.451150 GGTGATGTCGGCGCAGGA 62.451 66.667 10.83 2.24 0.00 3.86
1490 1682 4.873129 CGAGGGCGGTGATGTCGG 62.873 72.222 0.00 0.00 0.00 4.79
1493 1685 4.457496 CTGCGAGGGCGGTGATGT 62.457 66.667 0.00 0.00 44.10 3.06
1511 1703 3.110178 GAAAGACGCCGTCCCGTG 61.110 66.667 14.60 0.00 42.24 4.94
1512 1704 3.300765 AGAAAGACGCCGTCCCGT 61.301 61.111 14.60 0.00 45.30 5.28
1513 1705 2.809601 CAGAAAGACGCCGTCCCG 60.810 66.667 14.60 0.00 32.18 5.14
1515 1707 2.027625 CACCAGAAAGACGCCGTCC 61.028 63.158 14.60 0.00 32.18 4.79
1519 1711 1.373748 TACGCACCAGAAAGACGCC 60.374 57.895 0.00 0.00 0.00 5.68
1522 1714 3.991773 TGTATTGTACGCACCAGAAAGAC 59.008 43.478 0.00 0.00 0.00 3.01
1523 1715 4.260139 TGTATTGTACGCACCAGAAAGA 57.740 40.909 0.00 0.00 0.00 2.52
1524 1716 5.545658 ATTGTATTGTACGCACCAGAAAG 57.454 39.130 0.00 0.00 0.00 2.62
1525 1717 5.062433 CGTATTGTATTGTACGCACCAGAAA 59.938 40.000 0.00 0.00 37.48 2.52
1526 1718 4.563580 CGTATTGTATTGTACGCACCAGAA 59.436 41.667 0.00 0.00 37.48 3.02
1528 1720 4.106909 TCGTATTGTATTGTACGCACCAG 58.893 43.478 0.00 0.00 42.38 4.00
1529 1721 4.107363 TCGTATTGTATTGTACGCACCA 57.893 40.909 0.00 0.00 42.38 4.17
1530 1722 4.741185 TGATCGTATTGTATTGTACGCACC 59.259 41.667 0.00 0.00 42.38 5.01
1531 1723 5.876576 TGATCGTATTGTATTGTACGCAC 57.123 39.130 0.00 0.00 42.38 5.34
1532 1724 6.697892 TCATTGATCGTATTGTATTGTACGCA 59.302 34.615 0.00 0.00 42.38 5.24
1533 1725 7.001922 GTCATTGATCGTATTGTATTGTACGC 58.998 38.462 0.00 0.00 42.38 4.42
1534 1726 8.056710 TGTCATTGATCGTATTGTATTGTACG 57.943 34.615 0.00 0.00 43.61 3.67
1535 1727 9.031360 ACTGTCATTGATCGTATTGTATTGTAC 57.969 33.333 0.00 0.00 0.00 2.90
1536 1728 9.030301 CACTGTCATTGATCGTATTGTATTGTA 57.970 33.333 0.00 0.00 0.00 2.41
1537 1729 7.011389 CCACTGTCATTGATCGTATTGTATTGT 59.989 37.037 0.00 0.00 0.00 2.71
1538 1730 7.347448 CCACTGTCATTGATCGTATTGTATTG 58.653 38.462 0.00 0.00 0.00 1.90
1539 1731 6.483307 CCCACTGTCATTGATCGTATTGTATT 59.517 38.462 0.00 0.00 0.00 1.89
1540 1732 5.991606 CCCACTGTCATTGATCGTATTGTAT 59.008 40.000 0.00 0.00 0.00 2.29
1541 1733 5.105106 ACCCACTGTCATTGATCGTATTGTA 60.105 40.000 0.00 0.00 0.00 2.41
1542 1734 4.191544 CCCACTGTCATTGATCGTATTGT 58.808 43.478 0.00 0.00 0.00 2.71
1543 1735 4.191544 ACCCACTGTCATTGATCGTATTG 58.808 43.478 0.00 0.00 0.00 1.90
1544 1736 4.487714 ACCCACTGTCATTGATCGTATT 57.512 40.909 0.00 0.00 0.00 1.89
1546 1738 3.181494 CGTACCCACTGTCATTGATCGTA 60.181 47.826 0.00 0.00 0.00 3.43
1548 1740 2.193447 CGTACCCACTGTCATTGATCG 58.807 52.381 0.00 0.00 0.00 3.69
1549 1741 3.247006 ACGTACCCACTGTCATTGATC 57.753 47.619 0.00 0.00 0.00 2.92
1550 1742 3.132289 CCTACGTACCCACTGTCATTGAT 59.868 47.826 0.00 0.00 0.00 2.57
1551 1743 2.494471 CCTACGTACCCACTGTCATTGA 59.506 50.000 0.00 0.00 0.00 2.57
1553 1745 1.206371 GCCTACGTACCCACTGTCATT 59.794 52.381 0.00 0.00 0.00 2.57
1554 1746 0.822164 GCCTACGTACCCACTGTCAT 59.178 55.000 0.00 0.00 0.00 3.06
1557 1749 1.885163 GCAGCCTACGTACCCACTGT 61.885 60.000 0.00 0.00 0.00 3.55
1558 1750 1.153628 GCAGCCTACGTACCCACTG 60.154 63.158 0.00 0.00 0.00 3.66
1559 1751 1.608336 TGCAGCCTACGTACCCACT 60.608 57.895 0.00 0.00 0.00 4.00
1560 1752 1.447314 GTGCAGCCTACGTACCCAC 60.447 63.158 0.00 0.00 0.00 4.61
1561 1753 2.975536 GTGCAGCCTACGTACCCA 59.024 61.111 0.00 0.00 0.00 4.51
1562 1754 2.202703 CGTGCAGCCTACGTACCC 60.203 66.667 0.00 0.00 36.83 3.69
1569 1761 2.874664 AACCCGAACGTGCAGCCTA 61.875 57.895 0.00 0.00 0.00 3.93
1570 1762 4.250305 AACCCGAACGTGCAGCCT 62.250 61.111 0.00 0.00 0.00 4.58
1571 1763 4.025401 CAACCCGAACGTGCAGCC 62.025 66.667 0.00 0.00 0.00 4.85
1572 1764 4.683334 GCAACCCGAACGTGCAGC 62.683 66.667 0.00 0.00 0.00 5.25
1574 1766 3.276091 CAGCAACCCGAACGTGCA 61.276 61.111 9.97 0.00 0.00 4.57
1575 1767 2.970324 TCAGCAACCCGAACGTGC 60.970 61.111 0.00 0.00 0.00 5.34
1576 1768 0.319211 TAGTCAGCAACCCGAACGTG 60.319 55.000 0.00 0.00 0.00 4.49
1579 1771 0.319297 ACGTAGTCAGCAACCCGAAC 60.319 55.000 0.00 0.00 29.74 3.95
1581 1773 0.806868 CTACGTAGTCAGCAACCCGA 59.193 55.000 14.66 0.00 43.93 5.14
1582 1774 0.806868 TCTACGTAGTCAGCAACCCG 59.193 55.000 21.53 0.00 43.93 5.28
1583 1775 1.817447 AGTCTACGTAGTCAGCAACCC 59.183 52.381 21.53 1.38 43.93 4.11
1585 1777 2.251893 GCAGTCTACGTAGTCAGCAAC 58.748 52.381 24.51 14.57 43.93 4.17
1586 1778 1.883926 TGCAGTCTACGTAGTCAGCAA 59.116 47.619 27.92 16.46 43.93 3.91
1588 1780 1.790838 CGTGCAGTCTACGTAGTCAGC 60.791 57.143 23.33 23.33 43.93 4.26
1589 1781 2.160918 CGTGCAGTCTACGTAGTCAG 57.839 55.000 21.53 14.16 43.93 3.51
1596 1788 1.800315 CCCGAACGTGCAGTCTACG 60.800 63.158 0.00 0.00 46.31 3.51
1597 1789 0.319297 AACCCGAACGTGCAGTCTAC 60.319 55.000 0.00 0.00 0.00 2.59
1599 1791 1.300697 GAACCCGAACGTGCAGTCT 60.301 57.895 0.00 0.00 0.00 3.24
1600 1792 2.315386 GGAACCCGAACGTGCAGTC 61.315 63.158 0.00 0.00 0.00 3.51
1602 1794 2.030562 AGGAACCCGAACGTGCAG 59.969 61.111 0.00 0.00 0.00 4.41
1603 1795 2.280524 CAGGAACCCGAACGTGCA 60.281 61.111 0.00 0.00 0.00 4.57
1604 1796 3.723348 GCAGGAACCCGAACGTGC 61.723 66.667 0.00 0.00 39.83 5.34
1605 1797 2.280524 TGCAGGAACCCGAACGTG 60.281 61.111 0.00 0.00 0.00 4.49
1608 1800 0.741221 CTAGCTGCAGGAACCCGAAC 60.741 60.000 17.12 0.00 0.00 3.95
1609 1801 1.596934 CTAGCTGCAGGAACCCGAA 59.403 57.895 17.12 0.00 0.00 4.30
1610 1802 2.359169 CCTAGCTGCAGGAACCCGA 61.359 63.158 17.12 0.00 38.00 5.14
1611 1803 2.187946 CCTAGCTGCAGGAACCCG 59.812 66.667 17.12 0.00 38.00 5.28
1612 1804 2.124529 GCCTAGCTGCAGGAACCC 60.125 66.667 17.12 0.00 38.00 4.11
1613 1805 2.512515 CGCCTAGCTGCAGGAACC 60.513 66.667 17.12 0.00 38.00 3.62
1615 1807 3.785859 CCCGCCTAGCTGCAGGAA 61.786 66.667 17.12 0.00 38.00 3.36
1851 4050 1.153784 GAACGCCGGGTCGATGTTA 60.154 57.895 15.84 0.00 0.00 2.41
1905 4104 1.005867 GTTGGTGTCGCCGTTAGGA 60.006 57.895 0.00 0.00 41.02 2.94
2077 4276 0.106918 ACCAAGTCGGAGGCAAACAA 60.107 50.000 0.00 0.00 38.63 2.83
2146 4345 0.824109 CAGTTACGCCTGATCTGGGA 59.176 55.000 19.23 0.00 34.23 4.37
2242 4487 4.693538 TGCATGCGTATTTACATGTTGT 57.306 36.364 14.09 0.00 44.43 3.32
2334 4579 5.419471 ACTCCTTCTAGTGATCTAAACGCTT 59.581 40.000 0.00 0.00 0.00 4.68
2351 4596 2.496470 CGCCCCAGGTATATACTCCTTC 59.504 54.545 12.54 0.00 30.91 3.46
2352 4597 2.537143 CGCCCCAGGTATATACTCCTT 58.463 52.381 12.54 0.00 30.91 3.36
2353 4598 1.273098 CCGCCCCAGGTATATACTCCT 60.273 57.143 12.54 0.00 33.96 3.69
2354 4599 1.192428 CCGCCCCAGGTATATACTCC 58.808 60.000 12.54 0.00 0.00 3.85
2356 4601 0.908180 GCCCGCCCCAGGTATATACT 60.908 60.000 12.54 0.00 0.00 2.12
2358 4603 1.158944 TGCCCGCCCCAGGTATATA 59.841 57.895 0.00 0.00 0.00 0.86
2359 4604 2.122144 TGCCCGCCCCAGGTATAT 60.122 61.111 0.00 0.00 0.00 0.86
2360 4605 3.165685 GTGCCCGCCCCAGGTATA 61.166 66.667 0.00 0.00 0.00 1.47
2370 4615 4.767255 CTCTGGACCTGTGCCCGC 62.767 72.222 0.00 0.00 0.00 6.13
2371 4616 4.087892 CCTCTGGACCTGTGCCCG 62.088 72.222 0.00 0.00 0.00 6.13
2372 4617 2.930562 ACCTCTGGACCTGTGCCC 60.931 66.667 0.00 0.00 0.00 5.36
2373 4618 2.177594 CTCACCTCTGGACCTGTGCC 62.178 65.000 0.00 0.00 0.00 5.01
2374 4619 1.294780 CTCACCTCTGGACCTGTGC 59.705 63.158 0.00 0.00 0.00 4.57
2375 4620 1.924731 TACTCACCTCTGGACCTGTG 58.075 55.000 0.00 0.00 0.00 3.66
2376 4621 2.249139 GTTACTCACCTCTGGACCTGT 58.751 52.381 0.00 0.00 0.00 4.00
2377 4622 1.550976 GGTTACTCACCTCTGGACCTG 59.449 57.143 0.00 0.00 43.29 4.00
2378 4623 1.891450 CGGTTACTCACCTCTGGACCT 60.891 57.143 0.00 0.00 44.69 3.85
2382 4627 0.531200 GTCCGGTTACTCACCTCTGG 59.469 60.000 0.00 0.00 44.69 3.86
2411 4656 9.396022 GATGAAGGAGGTATTTTACAATCTTGA 57.604 33.333 0.00 0.00 0.00 3.02
2433 4678 4.686944 GCAGGTTGGGAGATTACATGATGA 60.687 45.833 0.00 0.00 0.00 2.92
2452 4697 1.541147 CGGTTTGCATATATGGGCAGG 59.459 52.381 14.51 0.00 41.68 4.85
2453 4698 2.229792 ACGGTTTGCATATATGGGCAG 58.770 47.619 14.51 0.00 41.68 4.85
2454 4699 2.356665 ACGGTTTGCATATATGGGCA 57.643 45.000 14.51 4.30 38.46 5.36
2455 4700 3.408634 AGTACGGTTTGCATATATGGGC 58.591 45.455 14.51 1.55 0.00 5.36
2456 4701 8.958119 ATTATAGTACGGTTTGCATATATGGG 57.042 34.615 14.51 0.00 0.00 4.00
2464 4709 9.701098 CCTATTTCTATTATAGTACGGTTTGCA 57.299 33.333 0.00 0.00 0.00 4.08
2465 4710 9.148104 CCCTATTTCTATTATAGTACGGTTTGC 57.852 37.037 0.00 0.00 0.00 3.68
2482 4727 9.740710 GCATAAAAGACCATATACCCTATTTCT 57.259 33.333 0.00 0.00 0.00 2.52
2483 4728 9.515226 TGCATAAAAGACCATATACCCTATTTC 57.485 33.333 0.00 0.00 0.00 2.17
2484 4729 9.875708 TTGCATAAAAGACCATATACCCTATTT 57.124 29.630 0.00 0.00 0.00 1.40
2485 4730 9.297037 GTTGCATAAAAGACCATATACCCTATT 57.703 33.333 0.00 0.00 0.00 1.73
2486 4731 8.444783 TGTTGCATAAAAGACCATATACCCTAT 58.555 33.333 0.00 0.00 0.00 2.57
2487 4732 7.807198 TGTTGCATAAAAGACCATATACCCTA 58.193 34.615 0.00 0.00 0.00 3.53
2488 4733 6.668645 TGTTGCATAAAAGACCATATACCCT 58.331 36.000 0.00 0.00 0.00 4.34
2489 4734 6.952773 TGTTGCATAAAAGACCATATACCC 57.047 37.500 0.00 0.00 0.00 3.69
2511 4756 3.518590 GACGGTACACAACCCTTAGATG 58.481 50.000 0.00 0.00 46.62 2.90
2529 4774 3.957671 TGCTGTCTATAGTTACGGACG 57.042 47.619 0.00 0.00 0.00 4.79
2531 4776 3.304458 CGCATGCTGTCTATAGTTACGGA 60.304 47.826 17.13 0.00 0.00 4.69
2533 4778 2.980476 CCGCATGCTGTCTATAGTTACG 59.020 50.000 17.13 0.00 0.00 3.18
2570 4816 2.636830 CATACAACCCTGGAGCAGAAG 58.363 52.381 0.00 0.00 32.44 2.85
2578 4824 1.153168 CGGCTCCATACAACCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
2579 4825 1.153168 CCGGCTCCATACAACCCTG 60.153 63.158 0.00 0.00 0.00 4.45
2581 4827 1.029947 CAACCGGCTCCATACAACCC 61.030 60.000 0.00 0.00 0.00 4.11
2610 4856 4.390264 GACCTCCCCTTAATTAGATGTGC 58.610 47.826 0.00 0.00 0.00 4.57
2624 4870 3.717294 ACATGCGTGGACCTCCCC 61.717 66.667 11.36 0.00 34.29 4.81
2661 4907 0.033504 TGAAGGGAGCTGACGAACAC 59.966 55.000 0.00 0.00 0.00 3.32
2665 4911 2.973899 GCTGAAGGGAGCTGACGA 59.026 61.111 0.00 0.00 35.95 4.20
2674 4920 0.813210 GCGATTCCAGAGCTGAAGGG 60.813 60.000 0.00 0.00 0.00 3.95
2685 4931 1.449423 CCACACGGATGCGATTCCA 60.449 57.895 15.49 0.00 35.34 3.53
2722 4968 4.998051 AGGAAAGAAGGGCTATCAAAACA 58.002 39.130 0.00 0.00 0.00 2.83
2725 4971 7.410174 TGAAATAGGAAAGAAGGGCTATCAAA 58.590 34.615 0.00 0.00 0.00 2.69
2734 4980 5.278169 CGCCATCATGAAATAGGAAAGAAGG 60.278 44.000 0.00 0.00 0.00 3.46
2745 4991 1.299541 GGTCGACGCCATCATGAAAT 58.700 50.000 9.92 0.00 0.00 2.17
2746 4992 0.742990 GGGTCGACGCCATCATGAAA 60.743 55.000 21.11 0.00 0.00 2.69
2759 5005 0.834261 TGAACATGGTCTGGGGTCGA 60.834 55.000 12.94 0.00 0.00 4.20
2763 5009 0.819582 GCAATGAACATGGTCTGGGG 59.180 55.000 12.94 0.24 0.00 4.96
2764 5010 0.819582 GGCAATGAACATGGTCTGGG 59.180 55.000 12.94 2.09 0.00 4.45
2767 5013 1.637553 AGAGGGCAATGAACATGGTCT 59.362 47.619 12.94 0.00 0.00 3.85
2799 5045 1.475682 CTAACACCGACCAGAGGTACC 59.524 57.143 2.73 2.73 40.59 3.34
2801 5047 2.885135 TCTAACACCGACCAGAGGTA 57.115 50.000 0.00 0.00 40.59 3.08
2803 5049 1.204941 CCTTCTAACACCGACCAGAGG 59.795 57.143 0.00 0.00 0.00 3.69
2814 5060 3.776969 ACATCATGGAGAGCCTTCTAACA 59.223 43.478 0.00 0.00 32.53 2.41
2823 5069 0.036022 GGGCCTACATCATGGAGAGC 59.964 60.000 0.84 0.00 26.39 4.09
2824 5070 0.319728 CGGGCCTACATCATGGAGAG 59.680 60.000 0.84 0.00 26.39 3.20
2844 5090 0.953471 AAACATGCTTGCTACGCGGA 60.953 50.000 12.47 0.00 0.00 5.54
2849 5095 5.362556 TCAAAGAGAAACATGCTTGCTAC 57.637 39.130 0.00 0.00 0.00 3.58
2858 5112 4.202367 ACTCCGACCTTCAAAGAGAAACAT 60.202 41.667 0.00 0.00 35.40 2.71
2860 5114 3.495001 CACTCCGACCTTCAAAGAGAAAC 59.505 47.826 0.00 0.00 35.40 2.78
2868 5122 0.531974 GCACACACTCCGACCTTCAA 60.532 55.000 0.00 0.00 0.00 2.69
2869 5123 1.069090 GCACACACTCCGACCTTCA 59.931 57.895 0.00 0.00 0.00 3.02
2932 5186 6.689178 TTTAGCGAAATTGCAAATTCAGAC 57.311 33.333 23.36 13.68 37.31 3.51
2957 5211 5.178252 CGCTCTTCTTTCTCTCACAAATTCA 59.822 40.000 0.00 0.00 0.00 2.57
2958 5212 5.406780 TCGCTCTTCTTTCTCTCACAAATTC 59.593 40.000 0.00 0.00 0.00 2.17
2959 5213 5.300752 TCGCTCTTCTTTCTCTCACAAATT 58.699 37.500 0.00 0.00 0.00 1.82
2960 5214 4.887748 TCGCTCTTCTTTCTCTCACAAAT 58.112 39.130 0.00 0.00 0.00 2.32
2961 5215 4.302455 CTCGCTCTTCTTTCTCTCACAAA 58.698 43.478 0.00 0.00 0.00 2.83
2962 5216 3.305676 CCTCGCTCTTCTTTCTCTCACAA 60.306 47.826 0.00 0.00 0.00 3.33
2963 5217 2.230025 CCTCGCTCTTCTTTCTCTCACA 59.770 50.000 0.00 0.00 0.00 3.58
2964 5218 2.230266 ACCTCGCTCTTCTTTCTCTCAC 59.770 50.000 0.00 0.00 0.00 3.51
2965 5219 2.230025 CACCTCGCTCTTCTTTCTCTCA 59.770 50.000 0.00 0.00 0.00 3.27
2966 5220 2.490115 TCACCTCGCTCTTCTTTCTCTC 59.510 50.000 0.00 0.00 0.00 3.20
2967 5221 2.491693 CTCACCTCGCTCTTCTTTCTCT 59.508 50.000 0.00 0.00 0.00 3.10
2968 5222 2.416701 CCTCACCTCGCTCTTCTTTCTC 60.417 54.545 0.00 0.00 0.00 2.87
2969 5223 1.548269 CCTCACCTCGCTCTTCTTTCT 59.452 52.381 0.00 0.00 0.00 2.52
2970 5224 2.003196 CCTCACCTCGCTCTTCTTTC 57.997 55.000 0.00 0.00 0.00 2.62
2971 5225 0.036858 GCCTCACCTCGCTCTTCTTT 60.037 55.000 0.00 0.00 0.00 2.52
2972 5226 1.594310 GCCTCACCTCGCTCTTCTT 59.406 57.895 0.00 0.00 0.00 2.52
2973 5227 2.705821 CGCCTCACCTCGCTCTTCT 61.706 63.158 0.00 0.00 0.00 2.85
2974 5228 2.202676 CGCCTCACCTCGCTCTTC 60.203 66.667 0.00 0.00 0.00 2.87
2975 5229 3.764466 CCGCCTCACCTCGCTCTT 61.764 66.667 0.00 0.00 0.00 2.85
2976 5230 4.742649 TCCGCCTCACCTCGCTCT 62.743 66.667 0.00 0.00 0.00 4.09
2977 5231 4.200283 CTCCGCCTCACCTCGCTC 62.200 72.222 0.00 0.00 0.00 5.03
2980 5234 4.200283 GAGCTCCGCCTCACCTCG 62.200 72.222 0.87 0.00 0.00 4.63
2981 5235 3.844090 GGAGCTCCGCCTCACCTC 61.844 72.222 19.06 0.00 33.47 3.85
3062 5316 1.888436 GACTCGCCACCAGGACATCA 61.888 60.000 0.00 0.00 36.89 3.07
3069 5323 4.135153 CCTCGGACTCGCCACCAG 62.135 72.222 0.00 0.00 35.94 4.00
3082 5336 1.214589 CCGTACTGGTCAACCCTCG 59.785 63.158 0.00 0.00 34.29 4.63
3087 5341 1.670083 GCCACCCGTACTGGTCAAC 60.670 63.158 5.92 0.00 36.12 3.18
3097 5351 0.109723 TTCTAAAAGCTGCCACCCGT 59.890 50.000 0.00 0.00 0.00 5.28
3101 5355 5.641709 GGTTCTTATTCTAAAAGCTGCCAC 58.358 41.667 0.00 0.00 0.00 5.01
3105 5360 6.801862 CCAAACGGTTCTTATTCTAAAAGCTG 59.198 38.462 0.00 0.00 0.00 4.24
3129 5384 5.105513 ACGATCCCCAACAATTATTTGAACC 60.106 40.000 4.42 0.00 36.64 3.62
3135 5390 4.787551 TGCTACGATCCCCAACAATTATT 58.212 39.130 0.00 0.00 0.00 1.40
3141 5396 1.271856 TTCTGCTACGATCCCCAACA 58.728 50.000 0.00 0.00 0.00 3.33
3142 5397 2.396590 TTTCTGCTACGATCCCCAAC 57.603 50.000 0.00 0.00 0.00 3.77
3143 5398 3.644966 AATTTCTGCTACGATCCCCAA 57.355 42.857 0.00 0.00 0.00 4.12
3144 5399 3.644966 AAATTTCTGCTACGATCCCCA 57.355 42.857 0.00 0.00 0.00 4.96
3145 5400 6.445357 TTTTAAATTTCTGCTACGATCCCC 57.555 37.500 0.00 0.00 0.00 4.81
3146 5401 8.926715 AAATTTTAAATTTCTGCTACGATCCC 57.073 30.769 9.58 0.00 0.00 3.85
3153 5408 9.900710 TGCGTAGAAAATTTTAAATTTCTGCTA 57.099 25.926 19.95 13.27 43.67 3.49
3154 5409 8.810652 TGCGTAGAAAATTTTAAATTTCTGCT 57.189 26.923 19.95 14.04 43.67 4.24
3155 5410 9.675553 GATGCGTAGAAAATTTTAAATTTCTGC 57.324 29.630 19.95 18.09 43.67 4.26
3158 5413 9.952341 GGTGATGCGTAGAAAATTTTAAATTTC 57.048 29.630 14.90 9.37 36.11 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.