Multiple sequence alignment - TraesCS6A01G047300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G047300 chr6A 100.000 3180 0 0 1 3180 23953377 23950198 0.000000e+00 5873.0
1 TraesCS6A01G047300 chr6A 81.475 1749 236 52 496 2208 24031926 24030230 0.000000e+00 1354.0
2 TraesCS6A01G047300 chr6A 85.794 901 110 11 1294 2182 24048957 24049851 0.000000e+00 939.0
3 TraesCS6A01G047300 chr6A 84.580 655 77 10 887 1526 23963283 23962638 2.080000e-176 628.0
4 TraesCS6A01G047300 chr6A 84.964 552 55 17 735 1277 24048367 24048899 4.670000e-148 534.0
5 TraesCS6A01G047300 chr6A 80.130 463 53 21 1 430 23964745 23964289 3.080000e-80 309.0
6 TraesCS6A01G047300 chr6A 87.984 258 20 7 628 883 23963790 23963542 8.630000e-76 294.0
7 TraesCS6A01G047300 chr6A 97.059 34 0 1 2322 2355 23961955 23961923 4.430000e-04 56.5
8 TraesCS6A01G047300 chr6B 91.872 2276 101 33 1 2235 42212986 42210754 0.000000e+00 3101.0
9 TraesCS6A01G047300 chr6B 82.055 1460 202 36 767 2208 42392821 42394238 0.000000e+00 1190.0
10 TraesCS6A01G047300 chr6B 80.652 1442 205 48 782 2190 42005948 42004548 0.000000e+00 1050.0
11 TraesCS6A01G047300 chr6B 85.138 942 117 13 1288 2221 42318474 42317548 0.000000e+00 942.0
12 TraesCS6A01G047300 chr6B 86.177 803 86 9 742 1526 42231897 42231102 0.000000e+00 845.0
13 TraesCS6A01G047300 chr6B 86.248 589 47 11 2239 2813 42210720 42210152 2.710000e-170 608.0
14 TraesCS6A01G047300 chr6B 93.519 108 5 2 110 217 42376902 42376797 3.280000e-35 159.0
15 TraesCS6A01G047300 chr6B 97.143 35 0 1 2321 2355 42227566 42227533 1.230000e-04 58.4
16 TraesCS6A01G047300 chr6B 100.000 29 0 0 2321 2349 42394504 42394532 2.000000e-03 54.7
17 TraesCS6A01G047300 chr6D 93.384 1723 93 12 518 2234 25828079 25826372 0.000000e+00 2531.0
18 TraesCS6A01G047300 chr6D 83.253 1451 189 28 767 2208 25880321 25878916 0.000000e+00 1284.0
19 TraesCS6A01G047300 chr6D 83.433 1340 176 18 887 2207 25852752 25851440 0.000000e+00 1203.0
20 TraesCS6A01G047300 chr6D 87.102 566 73 0 1617 2182 25915648 25916213 2.670000e-180 641.0
21 TraesCS6A01G047300 chr6D 85.057 522 48 13 2305 2818 25826125 25825626 3.660000e-139 505.0
22 TraesCS6A01G047300 chr6D 87.435 382 43 5 2803 3180 201070680 201070300 4.870000e-118 435.0
23 TraesCS6A01G047300 chr6D 85.959 292 30 7 594 883 25853297 25853015 5.160000e-78 302.0
24 TraesCS6A01G047300 chr6D 86.567 67 1 2 2239 2297 25826337 25826271 2.050000e-07 67.6
25 TraesCS6A01G047300 chr6D 94.872 39 1 1 2312 2349 25916299 25916337 3.430000e-05 60.2
26 TraesCS6A01G047300 chr4D 92.683 369 23 4 2812 3180 77041087 77040723 2.170000e-146 529.0
27 TraesCS6A01G047300 chr5D 91.848 368 27 3 2814 3180 231443238 231442873 7.870000e-141 510.0
28 TraesCS6A01G047300 chr5D 88.315 368 35 6 2814 3180 257951353 257950993 4.870000e-118 435.0
29 TraesCS6A01G047300 chr1D 89.101 367 37 3 2815 3180 115674313 115673949 1.340000e-123 453.0
30 TraesCS6A01G047300 chr3B 88.828 367 34 6 2815 3180 178980926 178980566 8.090000e-121 444.0
31 TraesCS6A01G047300 chr3B 87.895 380 41 5 2801 3178 519975427 519975051 2.910000e-120 442.0
32 TraesCS6A01G047300 chr1A 88.441 372 38 5 2812 3180 560266756 560267125 8.090000e-121 444.0
33 TraesCS6A01G047300 chr2B 88.172 372 34 7 2811 3179 242881380 242881016 4.870000e-118 435.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G047300 chr6A 23950198 23953377 3179 True 5873.000000 5873 100.00000 1 3180 1 chr6A.!!$R1 3179
1 TraesCS6A01G047300 chr6A 24030230 24031926 1696 True 1354.000000 1354 81.47500 496 2208 1 chr6A.!!$R2 1712
2 TraesCS6A01G047300 chr6A 24048367 24049851 1484 False 736.500000 939 85.37900 735 2182 2 chr6A.!!$F1 1447
3 TraesCS6A01G047300 chr6A 23961923 23964745 2822 True 321.875000 628 87.43825 1 2355 4 chr6A.!!$R3 2354
4 TraesCS6A01G047300 chr6B 42210152 42212986 2834 True 1854.500000 3101 89.06000 1 2813 2 chr6B.!!$R4 2812
5 TraesCS6A01G047300 chr6B 42004548 42005948 1400 True 1050.000000 1050 80.65200 782 2190 1 chr6B.!!$R1 1408
6 TraesCS6A01G047300 chr6B 42317548 42318474 926 True 942.000000 942 85.13800 1288 2221 1 chr6B.!!$R2 933
7 TraesCS6A01G047300 chr6B 42392821 42394532 1711 False 622.350000 1190 91.02750 767 2349 2 chr6B.!!$F1 1582
8 TraesCS6A01G047300 chr6B 42227533 42231897 4364 True 451.700000 845 91.66000 742 2355 2 chr6B.!!$R5 1613
9 TraesCS6A01G047300 chr6D 25878916 25880321 1405 True 1284.000000 1284 83.25300 767 2208 1 chr6D.!!$R1 1441
10 TraesCS6A01G047300 chr6D 25825626 25828079 2453 True 1034.533333 2531 88.33600 518 2818 3 chr6D.!!$R3 2300
11 TraesCS6A01G047300 chr6D 25851440 25853297 1857 True 752.500000 1203 84.69600 594 2207 2 chr6D.!!$R4 1613
12 TraesCS6A01G047300 chr6D 25915648 25916337 689 False 350.600000 641 90.98700 1617 2349 2 chr6D.!!$F1 732

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
730 1124 0.240945 GCAAAGATGGAACCACGTGG 59.759 55.0 32.83 32.83 42.17 4.94 F
1150 2074 0.179020 CTCCACAGTGACCAAGGCAA 60.179 55.0 0.62 0.00 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 2840 0.036388 ATGTGGTCGCGGAAGTTGAT 60.036 50.0 6.13 0.0 0.00 2.57 R
3027 7068 0.180406 AATAGGGGCGCAAGTACCTG 59.820 55.0 10.83 0.0 43.64 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.287584 AGAGGAAAATGACCATCCCCA 58.712 47.619 0.00 0.00 33.55 4.96
23 24 2.111613 AGGAAAATGACCATCCCCACAA 59.888 45.455 0.00 0.00 33.55 3.33
31 32 3.081804 GACCATCCCCACAAGTTAGTTG 58.918 50.000 0.00 0.00 42.48 3.16
52 53 1.897133 ACGAGCAACAGGTATACCACA 59.103 47.619 23.87 0.00 38.89 4.17
101 102 6.279709 ACCAAAGGTTTACCAACAAGTGGAA 61.280 40.000 1.13 0.00 41.24 3.53
102 103 7.708526 ACCAAAGGTTTACCAACAAGTGGAAA 61.709 38.462 1.13 0.00 41.24 3.13
103 104 8.947389 ACCAAAGGTTTACCAACAAGTGGAAAT 61.947 37.037 1.13 0.00 41.24 2.17
231 262 1.276705 GGAGTCTGGTGTTTCTCTCCC 59.723 57.143 0.00 0.00 36.46 4.30
250 281 1.412387 CGCTTTTTGGAGCTGCTTTC 58.588 50.000 6.82 0.00 40.52 2.62
279 310 5.604231 TCTCTATGCTCCTGTTTGTATCCAT 59.396 40.000 0.00 0.00 0.00 3.41
301 332 8.030692 TCCATAGCAATCTTTGAGTTTGAATTG 58.969 33.333 3.59 0.00 28.80 2.32
351 384 7.232534 TCAGGAATTGGAGCTAGCTTTTAAAAA 59.767 33.333 20.42 7.79 0.00 1.94
444 477 9.357652 CCATGATTGTTAACTGTTAATTCAAGG 57.642 33.333 15.36 17.74 0.00 3.61
466 499 5.962031 AGGTAGACATGGGTTTACTCACATA 59.038 40.000 0.00 0.00 35.52 2.29
473 506 4.523083 TGGGTTTACTCACATAATGGCTC 58.477 43.478 0.00 0.00 0.00 4.70
664 1050 1.566018 AACCAGCGCGCTAACAGTTC 61.566 55.000 36.02 0.00 0.00 3.01
724 1118 4.022068 TGACATTTGAGCAAAGATGGAACC 60.022 41.667 1.92 0.00 33.32 3.62
725 1119 3.896888 ACATTTGAGCAAAGATGGAACCA 59.103 39.130 1.92 0.00 33.32 3.67
726 1120 4.240096 CATTTGAGCAAAGATGGAACCAC 58.760 43.478 0.00 0.00 33.32 4.16
727 1121 1.522668 TGAGCAAAGATGGAACCACG 58.477 50.000 0.00 0.00 0.00 4.94
729 1123 1.197721 GAGCAAAGATGGAACCACGTG 59.802 52.381 9.08 9.08 0.00 4.49
730 1124 0.240945 GCAAAGATGGAACCACGTGG 59.759 55.000 32.83 32.83 42.17 4.94
731 1125 1.890876 CAAAGATGGAACCACGTGGA 58.109 50.000 40.21 19.23 38.94 4.02
732 1126 2.226330 CAAAGATGGAACCACGTGGAA 58.774 47.619 40.21 21.84 38.94 3.53
733 1127 1.892209 AAGATGGAACCACGTGGAAC 58.108 50.000 40.21 29.01 38.94 3.62
737 1131 0.253610 TGGAACCACGTGGAACTTGT 59.746 50.000 40.21 14.91 33.71 3.16
740 1134 2.011222 GAACCACGTGGAACTTGTCAA 58.989 47.619 40.21 0.00 33.71 3.18
775 1178 4.513692 TGCGTTGCTGTTAATTAGTCAACT 59.486 37.500 17.23 0.00 33.77 3.16
883 1548 2.222213 TGCAACCGAACGAACAATACTG 59.778 45.455 0.00 0.00 0.00 2.74
884 1549 2.412325 GCAACCGAACGAACAATACTGG 60.412 50.000 0.00 0.00 0.00 4.00
918 1838 3.056458 CTCGTGCCCACCACAGTA 58.944 61.111 0.00 0.00 44.91 2.74
922 1842 0.605319 CGTGCCCACCACAGTAATGT 60.605 55.000 0.00 0.00 44.91 2.71
924 1844 2.356135 GTGCCCACCACAGTAATGTAG 58.644 52.381 0.00 0.00 44.06 2.74
928 1848 2.540515 CCACCACAGTAATGTAGAGCG 58.459 52.381 0.00 0.00 0.00 5.03
930 1850 3.439293 CACCACAGTAATGTAGAGCGAG 58.561 50.000 0.00 0.00 0.00 5.03
946 1866 1.338337 GCGAGTGAGCTAGCAATCCTA 59.662 52.381 18.83 0.00 41.95 2.94
992 1912 5.178438 AGCCTACGTACGTAGCTAGATAAAC 59.822 44.000 38.11 21.62 44.80 2.01
1047 1971 4.590487 CATTGCTTGCTTGCCCTG 57.410 55.556 0.00 0.00 0.00 4.45
1150 2074 0.179020 CTCCACAGTGACCAAGGCAA 60.179 55.000 0.62 0.00 0.00 4.52
1255 2189 7.391148 ACCCTTAAGCAAACATAGTTATGTG 57.609 36.000 5.60 0.00 45.55 3.21
1258 2193 7.415206 CCCTTAAGCAAACATAGTTATGTGGAC 60.415 40.741 5.60 0.00 45.55 4.02
1279 2214 6.649141 TGGACTGATTTACAATCATATACGGC 59.351 38.462 0.00 0.00 0.00 5.68
1316 2295 6.689669 CGGGATTAATGGTGAAATTTCGTTAC 59.310 38.462 13.34 6.19 0.00 2.50
1558 2564 4.953010 TGGGCACGTGCACTGCAT 62.953 61.111 39.61 8.35 46.62 3.96
1814 2840 2.710902 ATCGGCTACTCGCAGTGCA 61.711 57.895 16.83 1.35 41.67 4.57
2026 3052 1.078848 CCAGGAGCTCTTCAACGGG 60.079 63.158 14.64 2.59 0.00 5.28
2119 3145 4.625028 CGATCATCAAGATGTCCAAGCTA 58.375 43.478 9.66 0.00 39.72 3.32
2183 3211 3.875727 CAGGGTCATTAACAGCTGATCAG 59.124 47.826 23.35 18.84 0.00 2.90
2221 3254 5.371526 TCATATATACTATCCGTCCGTCCC 58.628 45.833 0.00 0.00 0.00 4.46
2236 3269 2.093447 CCGTCCCAAGTTAGATTCAGCT 60.093 50.000 0.00 0.00 0.00 4.24
2237 3270 2.932614 CGTCCCAAGTTAGATTCAGCTG 59.067 50.000 7.63 7.63 0.00 4.24
2297 3455 3.876914 ACGCATGATATGTAACCAACCAG 59.123 43.478 0.00 0.00 0.00 4.00
2298 3456 3.303990 CGCATGATATGTAACCAACCAGC 60.304 47.826 0.00 0.00 0.00 4.85
2300 3458 4.261322 GCATGATATGTAACCAACCAGCTG 60.261 45.833 6.78 6.78 0.00 4.24
2301 3459 3.278574 TGATATGTAACCAACCAGCTGC 58.721 45.455 8.66 0.00 0.00 5.25
2302 3460 2.869101 TATGTAACCAACCAGCTGCA 57.131 45.000 8.66 0.00 0.00 4.41
2413 6448 5.220605 GGTCGTTTATGCAACATCTAAGGAC 60.221 44.000 13.86 13.86 34.68 3.85
2433 6468 4.082571 GGACTGTGTACGCTCCTAAACTAA 60.083 45.833 8.10 0.00 0.00 2.24
2434 6469 5.458041 ACTGTGTACGCTCCTAAACTAAA 57.542 39.130 8.10 0.00 0.00 1.85
2435 6470 5.225642 ACTGTGTACGCTCCTAAACTAAAC 58.774 41.667 8.10 0.00 0.00 2.01
2436 6471 5.010415 ACTGTGTACGCTCCTAAACTAAACT 59.990 40.000 8.10 0.00 0.00 2.66
2437 6472 6.207417 ACTGTGTACGCTCCTAAACTAAACTA 59.793 38.462 8.10 0.00 0.00 2.24
2446 6481 7.306051 CGCTCCTAAACTAAACTATTGACATCG 60.306 40.741 0.00 0.00 0.00 3.84
2448 6483 9.367444 CTCCTAAACTAAACTATTGACATCGTT 57.633 33.333 0.00 0.00 0.00 3.85
2520 6555 0.322322 TTTGTACGGAGCCGGTTCAT 59.678 50.000 20.67 9.94 44.69 2.57
2521 6556 0.390603 TTGTACGGAGCCGGTTCATG 60.391 55.000 20.67 13.83 44.69 3.07
2522 6557 1.217244 GTACGGAGCCGGTTCATGT 59.783 57.895 20.67 18.67 44.69 3.21
2523 6558 1.082117 GTACGGAGCCGGTTCATGTG 61.082 60.000 20.67 8.85 44.69 3.21
2524 6559 1.537814 TACGGAGCCGGTTCATGTGT 61.538 55.000 20.67 13.95 44.69 3.72
2555 6590 8.526978 TGGTGCACATCTAAAAGCAAATATAAA 58.473 29.630 20.43 0.00 38.91 1.40
2625 6664 6.326583 TGGGTAGTTGAAGAAAAGAGAAGAGA 59.673 38.462 0.00 0.00 0.00 3.10
2644 6683 2.491693 AGAAGAGGAGAGAAGCGAAGTG 59.508 50.000 0.00 0.00 0.00 3.16
2645 6684 1.181786 AGAGGAGAGAAGCGAAGTGG 58.818 55.000 0.00 0.00 0.00 4.00
2661 6700 1.092348 GTGGGGCGGTTGATTAAGTC 58.908 55.000 0.00 0.00 0.00 3.01
2662 6701 0.988832 TGGGGCGGTTGATTAAGTCT 59.011 50.000 0.00 0.00 0.00 3.24
2664 6703 1.743394 GGGGCGGTTGATTAAGTCTTG 59.257 52.381 0.00 0.00 0.00 3.02
2675 6714 7.878127 GGTTGATTAAGTCTTGGCTATAGCATA 59.122 37.037 25.53 11.59 44.36 3.14
2677 6716 9.845740 TTGATTAAGTCTTGGCTATAGCATAAA 57.154 29.630 25.53 15.02 44.36 1.40
2685 6724 4.973168 TGGCTATAGCATAAACTCCAAGG 58.027 43.478 25.53 0.00 44.36 3.61
2729 6768 9.908152 GATGGGCCACTTATTAACAAATAATAC 57.092 33.333 9.28 0.00 36.44 1.89
2730 6769 7.932335 TGGGCCACTTATTAACAAATAATACG 58.068 34.615 0.00 0.00 36.44 3.06
2771 6812 5.769367 TGTATATGTCGACTATCAGGTTGC 58.231 41.667 17.92 0.00 0.00 4.17
2787 6828 5.189736 TCAGGTTGCCTATAAGTGATTGACT 59.810 40.000 0.00 0.00 30.65 3.41
2800 6841 5.959512 AGTGATTGACTACTCCCTATAGCT 58.040 41.667 0.00 0.00 30.86 3.32
2815 6856 6.070767 TCCCTATAGCTGATTGTTGGCTATAC 60.071 42.308 0.00 0.00 44.32 1.47
2818 6859 8.194104 CCTATAGCTGATTGTTGGCTATACTAG 58.806 40.741 0.00 0.00 44.32 2.57
2832 6873 5.695851 CTATACTAGCAAAAAGGCCCATG 57.304 43.478 0.00 0.00 0.00 3.66
2833 6874 0.897621 ACTAGCAAAAAGGCCCATGC 59.102 50.000 0.00 5.21 39.06 4.06
2834 6875 0.896923 CTAGCAAAAAGGCCCATGCA 59.103 50.000 18.31 0.00 41.18 3.96
2835 6876 1.483415 CTAGCAAAAAGGCCCATGCAT 59.517 47.619 18.31 0.00 41.18 3.96
2836 6877 0.694196 AGCAAAAAGGCCCATGCATT 59.306 45.000 18.31 0.00 44.68 3.56
2837 6878 0.806241 GCAAAAAGGCCCATGCATTG 59.194 50.000 13.06 0.00 41.34 2.82
2838 6879 0.806241 CAAAAAGGCCCATGCATTGC 59.194 50.000 0.00 9.06 41.34 3.56
2839 6880 0.400975 AAAAAGGCCCATGCATTGCA 59.599 45.000 14.72 14.72 41.34 4.08
2840 6881 0.400975 AAAAGGCCCATGCATTGCAA 59.599 45.000 16.46 0.00 41.34 4.08
2841 6882 0.321830 AAAGGCCCATGCATTGCAAC 60.322 50.000 16.46 5.67 41.34 4.17
2842 6883 2.509786 GGCCCATGCATTGCAACG 60.510 61.111 16.46 9.78 43.62 4.10
2843 6884 2.509786 GCCCATGCATTGCAACGG 60.510 61.111 16.46 17.91 43.62 4.44
2844 6885 2.184836 CCCATGCATTGCAACGGG 59.815 61.111 26.32 26.32 44.76 5.28
2845 6886 3.286407 CCATGCATTGCAACGGGA 58.714 55.556 16.46 0.00 43.62 5.14
2846 6887 1.140161 CCATGCATTGCAACGGGAG 59.860 57.895 16.46 1.99 43.62 4.30
2847 6888 1.314534 CCATGCATTGCAACGGGAGA 61.315 55.000 16.46 0.00 43.62 3.71
2848 6889 0.527113 CATGCATTGCAACGGGAGAA 59.473 50.000 16.46 0.00 43.62 2.87
2849 6890 1.067706 CATGCATTGCAACGGGAGAAA 60.068 47.619 16.46 0.00 43.62 2.52
2850 6891 1.035923 TGCATTGCAACGGGAGAAAA 58.964 45.000 9.33 0.00 34.76 2.29
2851 6892 1.410517 TGCATTGCAACGGGAGAAAAA 59.589 42.857 9.33 0.00 34.76 1.94
2870 6911 5.705609 AAAAATACCACACGCTCTTGATT 57.294 34.783 0.00 0.00 0.00 2.57
2871 6912 5.705609 AAAATACCACACGCTCTTGATTT 57.294 34.783 0.00 0.00 0.00 2.17
2872 6913 6.811253 AAAATACCACACGCTCTTGATTTA 57.189 33.333 0.00 0.00 0.00 1.40
2873 6914 5.796350 AATACCACACGCTCTTGATTTAC 57.204 39.130 0.00 0.00 0.00 2.01
2874 6915 3.120321 ACCACACGCTCTTGATTTACA 57.880 42.857 0.00 0.00 0.00 2.41
2875 6916 3.472652 ACCACACGCTCTTGATTTACAA 58.527 40.909 0.00 0.00 36.97 2.41
2876 6917 3.880490 ACCACACGCTCTTGATTTACAAA 59.120 39.130 0.00 0.00 38.08 2.83
2877 6918 4.336993 ACCACACGCTCTTGATTTACAAAA 59.663 37.500 0.00 0.00 38.08 2.44
2878 6919 5.163602 ACCACACGCTCTTGATTTACAAAAA 60.164 36.000 0.00 0.00 38.08 1.94
3012 7053 8.298030 GGTCTGGAAAAGAACATTTTTGTATG 57.702 34.615 0.00 0.00 42.76 2.39
3013 7054 7.384932 GGTCTGGAAAAGAACATTTTTGTATGG 59.615 37.037 0.00 0.00 42.76 2.74
3014 7055 7.926018 GTCTGGAAAAGAACATTTTTGTATGGT 59.074 33.333 0.00 0.00 36.40 3.55
3015 7056 8.141268 TCTGGAAAAGAACATTTTTGTATGGTC 58.859 33.333 0.00 0.00 41.56 4.02
3020 7061 6.824305 AGAACATTTTTGTATGGTCTCCTG 57.176 37.500 0.00 0.00 46.96 3.86
3021 7062 6.306987 AGAACATTTTTGTATGGTCTCCTGT 58.693 36.000 0.00 0.00 46.96 4.00
3022 7063 6.777580 AGAACATTTTTGTATGGTCTCCTGTT 59.222 34.615 0.00 0.00 46.96 3.16
3023 7064 6.331369 ACATTTTTGTATGGTCTCCTGTTG 57.669 37.500 0.00 0.00 0.00 3.33
3024 7065 6.068010 ACATTTTTGTATGGTCTCCTGTTGA 58.932 36.000 0.00 0.00 0.00 3.18
3025 7066 6.016276 ACATTTTTGTATGGTCTCCTGTTGAC 60.016 38.462 0.00 0.00 0.00 3.18
3026 7067 4.974645 TTTGTATGGTCTCCTGTTGACT 57.025 40.909 0.00 0.00 35.04 3.41
3027 7068 4.537135 TTGTATGGTCTCCTGTTGACTC 57.463 45.455 0.00 0.00 35.04 3.36
3028 7069 3.506398 TGTATGGTCTCCTGTTGACTCA 58.494 45.455 0.00 0.00 35.04 3.41
3029 7070 3.511540 TGTATGGTCTCCTGTTGACTCAG 59.488 47.826 0.00 0.00 35.04 3.35
3037 7078 2.417719 CCTGTTGACTCAGGTACTTGC 58.582 52.381 0.00 0.00 46.92 4.01
3038 7079 2.061773 CTGTTGACTCAGGTACTTGCG 58.938 52.381 0.00 0.00 34.60 4.85
3039 7080 0.790814 GTTGACTCAGGTACTTGCGC 59.209 55.000 0.00 0.00 34.60 6.09
3040 7081 0.320421 TTGACTCAGGTACTTGCGCC 60.320 55.000 4.18 0.00 34.60 6.53
3041 7082 1.448013 GACTCAGGTACTTGCGCCC 60.448 63.158 4.18 0.00 34.60 6.13
3042 7083 2.125106 CTCAGGTACTTGCGCCCC 60.125 66.667 4.18 0.00 34.60 5.80
3043 7084 2.606519 TCAGGTACTTGCGCCCCT 60.607 61.111 4.18 0.00 34.60 4.79
3044 7085 1.305465 TCAGGTACTTGCGCCCCTA 60.305 57.895 4.18 0.00 34.60 3.53
3045 7086 0.689745 TCAGGTACTTGCGCCCCTAT 60.690 55.000 4.18 0.00 34.60 2.57
3046 7087 0.180406 CAGGTACTTGCGCCCCTATT 59.820 55.000 4.18 0.00 34.60 1.73
3047 7088 0.916809 AGGTACTTGCGCCCCTATTT 59.083 50.000 4.18 0.00 27.25 1.40
3048 7089 1.134189 AGGTACTTGCGCCCCTATTTC 60.134 52.381 4.18 0.00 27.25 2.17
3049 7090 1.407712 GGTACTTGCGCCCCTATTTCA 60.408 52.381 4.18 0.00 0.00 2.69
3050 7091 2.572290 GTACTTGCGCCCCTATTTCAT 58.428 47.619 4.18 0.00 0.00 2.57
3051 7092 1.680338 ACTTGCGCCCCTATTTCATC 58.320 50.000 4.18 0.00 0.00 2.92
3052 7093 1.064758 ACTTGCGCCCCTATTTCATCA 60.065 47.619 4.18 0.00 0.00 3.07
3053 7094 1.334869 CTTGCGCCCCTATTTCATCAC 59.665 52.381 4.18 0.00 0.00 3.06
3054 7095 0.254462 TGCGCCCCTATTTCATCACA 59.746 50.000 4.18 0.00 0.00 3.58
3055 7096 1.340502 TGCGCCCCTATTTCATCACAA 60.341 47.619 4.18 0.00 0.00 3.33
3056 7097 1.956477 GCGCCCCTATTTCATCACAAT 59.044 47.619 0.00 0.00 0.00 2.71
3057 7098 2.362077 GCGCCCCTATTTCATCACAATT 59.638 45.455 0.00 0.00 0.00 2.32
3058 7099 3.181476 GCGCCCCTATTTCATCACAATTT 60.181 43.478 0.00 0.00 0.00 1.82
3059 7100 4.610945 CGCCCCTATTTCATCACAATTTC 58.389 43.478 0.00 0.00 0.00 2.17
3060 7101 4.339247 CGCCCCTATTTCATCACAATTTCT 59.661 41.667 0.00 0.00 0.00 2.52
3061 7102 5.163519 CGCCCCTATTTCATCACAATTTCTT 60.164 40.000 0.00 0.00 0.00 2.52
3062 7103 6.044682 GCCCCTATTTCATCACAATTTCTTG 58.955 40.000 0.00 0.00 38.39 3.02
3063 7104 6.351286 GCCCCTATTTCATCACAATTTCTTGT 60.351 38.462 0.00 0.00 46.54 3.16
3064 7105 7.260603 CCCCTATTTCATCACAATTTCTTGTC 58.739 38.462 0.00 0.00 43.76 3.18
3065 7106 7.093814 CCCCTATTTCATCACAATTTCTTGTCA 60.094 37.037 0.00 0.00 43.76 3.58
3066 7107 8.472413 CCCTATTTCATCACAATTTCTTGTCAT 58.528 33.333 0.00 0.00 43.76 3.06
3093 7134 9.866655 ATATGTCATATGTATTTGTCCCAGTTT 57.133 29.630 4.47 0.00 0.00 2.66
3094 7135 8.593945 ATGTCATATGTATTTGTCCCAGTTTT 57.406 30.769 1.90 0.00 0.00 2.43
3095 7136 9.693739 ATGTCATATGTATTTGTCCCAGTTTTA 57.306 29.630 1.90 0.00 0.00 1.52
3096 7137 9.693739 TGTCATATGTATTTGTCCCAGTTTTAT 57.306 29.630 1.90 0.00 0.00 1.40
3098 7139 9.913310 TCATATGTATTTGTCCCAGTTTTATCA 57.087 29.630 1.90 0.00 0.00 2.15
3099 7140 9.950680 CATATGTATTTGTCCCAGTTTTATCAC 57.049 33.333 0.00 0.00 0.00 3.06
3100 7141 9.920946 ATATGTATTTGTCCCAGTTTTATCACT 57.079 29.630 0.00 0.00 0.00 3.41
3102 7143 9.920946 ATGTATTTGTCCCAGTTTTATCACTAT 57.079 29.630 0.00 0.00 0.00 2.12
3103 7144 9.747898 TGTATTTGTCCCAGTTTTATCACTATT 57.252 29.630 0.00 0.00 0.00 1.73
3154 7195 2.747396 TTTTTGTCATGCATGCCTCC 57.253 45.000 22.25 9.76 0.00 4.30
3155 7196 1.927487 TTTTGTCATGCATGCCTCCT 58.073 45.000 22.25 0.00 0.00 3.69
3156 7197 1.927487 TTTGTCATGCATGCCTCCTT 58.073 45.000 22.25 0.00 0.00 3.36
3157 7198 1.927487 TTGTCATGCATGCCTCCTTT 58.073 45.000 22.25 0.00 0.00 3.11
3158 7199 1.927487 TGTCATGCATGCCTCCTTTT 58.073 45.000 22.25 0.00 0.00 2.27
3159 7200 2.250031 TGTCATGCATGCCTCCTTTTT 58.750 42.857 22.25 0.00 0.00 1.94
3160 7201 3.429492 TGTCATGCATGCCTCCTTTTTA 58.571 40.909 22.25 0.00 0.00 1.52
3161 7202 3.193267 TGTCATGCATGCCTCCTTTTTAC 59.807 43.478 22.25 10.90 0.00 2.01
3162 7203 2.760092 TCATGCATGCCTCCTTTTTACC 59.240 45.455 22.25 0.00 0.00 2.85
3163 7204 1.555967 TGCATGCCTCCTTTTTACCC 58.444 50.000 16.68 0.00 0.00 3.69
3164 7205 1.077005 TGCATGCCTCCTTTTTACCCT 59.923 47.619 16.68 0.00 0.00 4.34
3165 7206 2.179427 GCATGCCTCCTTTTTACCCTT 58.821 47.619 6.36 0.00 0.00 3.95
3166 7207 2.567169 GCATGCCTCCTTTTTACCCTTT 59.433 45.455 6.36 0.00 0.00 3.11
3167 7208 3.007940 GCATGCCTCCTTTTTACCCTTTT 59.992 43.478 6.36 0.00 0.00 2.27
3168 7209 4.504864 GCATGCCTCCTTTTTACCCTTTTT 60.505 41.667 6.36 0.00 0.00 1.94
3169 7210 4.948341 TGCCTCCTTTTTACCCTTTTTC 57.052 40.909 0.00 0.00 0.00 2.29
3170 7211 4.290942 TGCCTCCTTTTTACCCTTTTTCA 58.709 39.130 0.00 0.00 0.00 2.69
3171 7212 4.904853 TGCCTCCTTTTTACCCTTTTTCAT 59.095 37.500 0.00 0.00 0.00 2.57
3172 7213 5.221621 TGCCTCCTTTTTACCCTTTTTCATG 60.222 40.000 0.00 0.00 0.00 3.07
3173 7214 5.237815 CCTCCTTTTTACCCTTTTTCATGC 58.762 41.667 0.00 0.00 0.00 4.06
3174 7215 4.877282 TCCTTTTTACCCTTTTTCATGCG 58.123 39.130 0.00 0.00 0.00 4.73
3175 7216 4.342665 TCCTTTTTACCCTTTTTCATGCGT 59.657 37.500 0.00 0.00 0.00 5.24
3176 7217 4.447389 CCTTTTTACCCTTTTTCATGCGTG 59.553 41.667 0.00 0.00 0.00 5.34
3177 7218 4.657436 TTTTACCCTTTTTCATGCGTGT 57.343 36.364 5.68 0.00 0.00 4.49
3178 7219 3.907894 TTACCCTTTTTCATGCGTGTC 57.092 42.857 5.68 0.00 0.00 3.67
3179 7220 0.958822 ACCCTTTTTCATGCGTGTCC 59.041 50.000 5.68 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.094390 TGTGGTATACCTGTTGCTCGTC 60.094 50.000 22.41 2.10 36.82 4.20
45 46 5.815581 ACTAATGTGGTGAATGTGTGGTAT 58.184 37.500 0.00 0.00 0.00 2.73
52 53 4.908601 TGGAGACTAATGTGGTGAATGT 57.091 40.909 0.00 0.00 0.00 2.71
101 102 8.907222 AATCTTTGGTGCAAACTTGAATTATT 57.093 26.923 0.00 0.00 0.00 1.40
102 103 8.776470 CAAATCTTTGGTGCAAACTTGAATTAT 58.224 29.630 0.00 0.00 34.59 1.28
103 104 7.768120 ACAAATCTTTGGTGCAAACTTGAATTA 59.232 29.630 7.51 0.00 42.34 1.40
141 154 6.040955 TCACAGGTAAACATTTGGTGCATTTA 59.959 34.615 0.00 0.00 0.00 1.40
142 155 5.055812 CACAGGTAAACATTTGGTGCATTT 58.944 37.500 0.00 0.00 0.00 2.32
250 281 9.149225 GATACAAACAGGAGCATAGAGAATATG 57.851 37.037 0.00 0.00 0.00 1.78
279 310 9.814899 TTTTCAATTCAAACTCAAAGATTGCTA 57.185 25.926 0.00 0.00 29.36 3.49
354 387 7.984050 TGCCTTGTTATGTTTTGAAAGAAATGA 59.016 29.630 0.00 0.00 0.00 2.57
363 396 2.961741 TGCCTGCCTTGTTATGTTTTGA 59.038 40.909 0.00 0.00 0.00 2.69
364 397 3.319755 CTGCCTGCCTTGTTATGTTTTG 58.680 45.455 0.00 0.00 0.00 2.44
444 477 7.226720 CCATTATGTGAGTAAACCCATGTCTAC 59.773 40.741 0.00 0.00 0.00 2.59
466 499 2.683152 GCAGAGAAGGATGTGAGCCATT 60.683 50.000 0.00 0.00 32.56 3.16
473 506 0.179936 GAGGGGCAGAGAAGGATGTG 59.820 60.000 0.00 0.00 0.00 3.21
598 692 3.492102 TCCAGCCAGCTAATTGGTATC 57.508 47.619 8.81 0.00 40.49 2.24
601 695 3.395607 TCATATCCAGCCAGCTAATTGGT 59.604 43.478 8.81 1.64 40.49 3.67
681 1074 5.043903 GTCACTAGCAATAGCATTTCGAGA 58.956 41.667 0.00 0.00 45.49 4.04
724 1118 3.869246 ACTTAGTTGACAAGTTCCACGTG 59.131 43.478 9.08 9.08 32.28 4.49
725 1119 4.133013 ACTTAGTTGACAAGTTCCACGT 57.867 40.909 0.00 0.00 32.28 4.49
726 1120 5.526115 TCTACTTAGTTGACAAGTTCCACG 58.474 41.667 0.00 0.00 37.42 4.94
727 1121 6.746120 TCTCTACTTAGTTGACAAGTTCCAC 58.254 40.000 0.00 0.00 37.42 4.02
729 1123 6.311690 GCATCTCTACTTAGTTGACAAGTTCC 59.688 42.308 0.00 0.00 37.42 3.62
730 1124 6.034044 CGCATCTCTACTTAGTTGACAAGTTC 59.966 42.308 0.00 0.00 37.42 3.01
731 1125 5.864474 CGCATCTCTACTTAGTTGACAAGTT 59.136 40.000 0.00 0.00 37.42 2.66
732 1126 5.047943 ACGCATCTCTACTTAGTTGACAAGT 60.048 40.000 0.34 0.34 39.50 3.16
733 1127 5.403246 ACGCATCTCTACTTAGTTGACAAG 58.597 41.667 0.00 0.00 0.00 3.16
737 1131 4.082190 AGCAACGCATCTCTACTTAGTTGA 60.082 41.667 9.24 0.00 39.60 3.18
740 1134 3.193691 ACAGCAACGCATCTCTACTTAGT 59.806 43.478 0.00 0.00 0.00 2.24
775 1178 1.689813 TCCACGTGGTTGCTTTCTCTA 59.310 47.619 32.74 7.31 36.34 2.43
872 1275 8.999431 ACCTATTTATAATGCCAGTATTGTTCG 58.001 33.333 0.00 0.00 0.00 3.95
883 1548 4.154195 CACGAGCCACCTATTTATAATGCC 59.846 45.833 0.00 0.00 0.00 4.40
884 1549 4.378459 GCACGAGCCACCTATTTATAATGC 60.378 45.833 0.00 0.00 33.58 3.56
918 1838 2.034053 GCTAGCTCACTCGCTCTACATT 59.966 50.000 7.70 0.00 41.30 2.71
922 1842 1.751437 TTGCTAGCTCACTCGCTCTA 58.249 50.000 17.23 0.00 41.30 2.43
924 1844 1.486439 GATTGCTAGCTCACTCGCTC 58.514 55.000 17.23 0.00 41.30 5.03
928 1848 4.664150 AAGTAGGATTGCTAGCTCACTC 57.336 45.455 17.23 7.03 0.00 3.51
930 1850 5.263968 TGTAAGTAGGATTGCTAGCTCAC 57.736 43.478 17.23 6.67 0.00 3.51
1047 1971 1.107945 CGGAAGAGGAGAGGAGGAAC 58.892 60.000 0.00 0.00 0.00 3.62
1255 2189 6.183360 CGCCGTATATGATTGTAAATCAGTCC 60.183 42.308 8.50 0.00 32.79 3.85
1258 2193 6.944557 TCGCCGTATATGATTGTAAATCAG 57.055 37.500 8.50 0.00 0.00 2.90
1279 2214 1.108776 TAATCCCGACCTGACCTTCG 58.891 55.000 0.00 0.00 34.93 3.79
1316 2295 2.158957 ACCCGTCACAGCCTTATACATG 60.159 50.000 0.00 0.00 0.00 3.21
1324 2311 2.185310 GAATGGACCCGTCACAGCCT 62.185 60.000 0.00 0.00 0.00 4.58
1556 2562 2.880268 TGAGTGACCAGAAAACTGCATG 59.120 45.455 0.00 0.00 0.00 4.06
1558 2564 2.288666 GTGAGTGACCAGAAAACTGCA 58.711 47.619 0.00 0.00 0.00 4.41
1559 2565 2.288666 TGTGAGTGACCAGAAAACTGC 58.711 47.619 0.00 0.00 0.00 4.40
1576 2591 1.262417 CCGATCGATCCAAGCATTGTG 59.738 52.381 18.66 1.53 46.99 3.33
1814 2840 0.036388 ATGTGGTCGCGGAAGTTGAT 60.036 50.000 6.13 0.00 0.00 2.57
1950 2976 1.200716 TGTAGTAGGCGTTGTCGAAGG 59.799 52.381 0.00 0.00 39.71 3.46
2052 3078 1.812507 GCCGGGTTGATGACGTACC 60.813 63.158 2.18 0.00 0.00 3.34
2061 3087 4.735132 CGAAGAGCGCCGGGTTGA 62.735 66.667 2.29 0.00 0.00 3.18
2183 3211 6.927936 AGTATATATGATGCGAAGATGGATGC 59.072 38.462 0.00 0.00 0.00 3.91
2221 3254 5.700832 TGTAACACCAGCTGAATCTAACTTG 59.299 40.000 17.39 0.00 0.00 3.16
2236 3269 3.875125 TGCACTTAACACTGTAACACCA 58.125 40.909 0.00 0.00 0.00 4.17
2237 3270 4.783242 CATGCACTTAACACTGTAACACC 58.217 43.478 0.00 0.00 0.00 4.16
2267 3330 9.984190 TTGGTTACATATCATGCGTACTTATAA 57.016 29.630 0.00 0.00 0.00 0.98
2413 6448 5.467705 AGTTTAGTTTAGGAGCGTACACAG 58.532 41.667 0.00 0.00 0.00 3.66
2433 6468 3.604875 ACCCGAACGATGTCAATAGTT 57.395 42.857 0.00 0.00 34.70 2.24
2434 6469 3.259064 CAACCCGAACGATGTCAATAGT 58.741 45.455 0.00 0.00 0.00 2.12
2435 6470 3.259064 ACAACCCGAACGATGTCAATAG 58.741 45.455 0.00 0.00 0.00 1.73
2436 6471 3.322211 ACAACCCGAACGATGTCAATA 57.678 42.857 0.00 0.00 0.00 1.90
2437 6472 2.178912 ACAACCCGAACGATGTCAAT 57.821 45.000 0.00 0.00 0.00 2.57
2598 6637 6.326583 TCTTCTCTTTTCTTCAACTACCCAGA 59.673 38.462 0.00 0.00 0.00 3.86
2599 6638 6.525629 TCTTCTCTTTTCTTCAACTACCCAG 58.474 40.000 0.00 0.00 0.00 4.45
2601 6640 6.760291 TCTCTTCTCTTTTCTTCAACTACCC 58.240 40.000 0.00 0.00 0.00 3.69
2602 6641 8.145122 TCTTCTCTTCTCTTTTCTTCAACTACC 58.855 37.037 0.00 0.00 0.00 3.18
2603 6642 9.191995 CTCTTCTCTTCTCTTTTCTTCAACTAC 57.808 37.037 0.00 0.00 0.00 2.73
2613 6652 6.295292 GCTTCTCTCCTCTTCTCTTCTCTTTT 60.295 42.308 0.00 0.00 0.00 2.27
2625 6664 1.548269 CCACTTCGCTTCTCTCCTCTT 59.452 52.381 0.00 0.00 0.00 2.85
2644 6683 1.743394 CAAGACTTAATCAACCGCCCC 59.257 52.381 0.00 0.00 0.00 5.80
2645 6684 1.743394 CCAAGACTTAATCAACCGCCC 59.257 52.381 0.00 0.00 0.00 6.13
2661 6700 5.471456 CCTTGGAGTTTATGCTATAGCCAAG 59.529 44.000 21.84 20.90 46.54 3.61
2662 6701 5.376625 CCTTGGAGTTTATGCTATAGCCAA 58.623 41.667 21.84 12.80 41.18 4.52
2664 6703 3.753797 GCCTTGGAGTTTATGCTATAGCC 59.246 47.826 21.84 6.06 41.18 3.93
2675 6714 3.037549 TCCACAAATTGCCTTGGAGTTT 58.962 40.909 0.32 0.00 33.02 2.66
2677 6716 2.380064 TCCACAAATTGCCTTGGAGT 57.620 45.000 0.32 0.00 33.02 3.85
2685 6724 5.870978 GCCCATCATATAATCCACAAATTGC 59.129 40.000 0.00 0.00 0.00 3.56
2752 6793 3.296854 AGGCAACCTGATAGTCGACATA 58.703 45.455 19.50 7.72 29.57 2.29
2756 6797 5.009710 CACTTATAGGCAACCTGATAGTCGA 59.990 44.000 0.00 0.00 34.61 4.20
2764 6805 5.431765 AGTCAATCACTTATAGGCAACCTG 58.568 41.667 0.00 0.00 29.71 4.00
2771 6812 8.887264 ATAGGGAGTAGTCAATCACTTATAGG 57.113 38.462 0.00 0.00 36.43 2.57
2787 6828 4.040461 GCCAACAATCAGCTATAGGGAGTA 59.960 45.833 1.04 0.00 0.00 2.59
2815 6856 0.896923 TGCATGGGCCTTTTTGCTAG 59.103 50.000 17.60 0.00 40.13 3.42
2818 6859 0.806241 CAATGCATGGGCCTTTTTGC 59.194 50.000 4.53 9.61 40.13 3.68
2819 6860 0.806241 GCAATGCATGGGCCTTTTTG 59.194 50.000 4.53 3.82 40.13 2.44
2820 6861 0.400975 TGCAATGCATGGGCCTTTTT 59.599 45.000 17.93 0.00 40.13 1.94
2821 6862 0.400975 TTGCAATGCATGGGCCTTTT 59.599 45.000 9.39 0.00 38.76 2.27
2822 6863 0.321830 GTTGCAATGCATGGGCCTTT 60.322 50.000 9.39 0.00 38.76 3.11
2823 6864 1.297364 GTTGCAATGCATGGGCCTT 59.703 52.632 9.39 0.00 38.76 4.35
2824 6865 2.983791 GTTGCAATGCATGGGCCT 59.016 55.556 9.39 0.00 38.76 5.19
2825 6866 2.509786 CGTTGCAATGCATGGGCC 60.510 61.111 9.39 0.00 38.76 5.80
2826 6867 2.509786 CCGTTGCAATGCATGGGC 60.510 61.111 9.39 14.84 38.76 5.36
2827 6868 2.184836 CCCGTTGCAATGCATGGG 59.815 61.111 25.10 25.10 44.20 4.00
2828 6869 1.140161 CTCCCGTTGCAATGCATGG 59.860 57.895 9.39 14.18 38.76 3.66
2829 6870 0.527113 TTCTCCCGTTGCAATGCATG 59.473 50.000 9.39 4.77 38.76 4.06
2830 6871 1.255882 TTTCTCCCGTTGCAATGCAT 58.744 45.000 9.39 0.00 38.76 3.96
2831 6872 1.035923 TTTTCTCCCGTTGCAATGCA 58.964 45.000 13.42 2.72 36.47 3.96
2832 6873 2.147436 TTTTTCTCCCGTTGCAATGC 57.853 45.000 13.42 0.00 0.00 3.56
2848 6889 5.705609 AATCAAGAGCGTGTGGTATTTTT 57.294 34.783 0.00 0.00 0.00 1.94
2849 6890 5.705609 AAATCAAGAGCGTGTGGTATTTT 57.294 34.783 0.00 0.00 0.00 1.82
2850 6891 5.703592 TGTAAATCAAGAGCGTGTGGTATTT 59.296 36.000 0.00 0.00 0.00 1.40
2851 6892 5.242434 TGTAAATCAAGAGCGTGTGGTATT 58.758 37.500 0.00 0.00 0.00 1.89
2852 6893 4.827692 TGTAAATCAAGAGCGTGTGGTAT 58.172 39.130 0.00 0.00 0.00 2.73
2853 6894 4.260139 TGTAAATCAAGAGCGTGTGGTA 57.740 40.909 0.00 0.00 0.00 3.25
2854 6895 3.120321 TGTAAATCAAGAGCGTGTGGT 57.880 42.857 0.00 0.00 0.00 4.16
2855 6896 4.481930 TTTGTAAATCAAGAGCGTGTGG 57.518 40.909 0.00 0.00 37.35 4.17
2982 7023 8.510505 CAAAAATGTTCTTTTCCAGACCAAAAA 58.489 29.630 0.00 0.00 25.65 1.94
2983 7024 7.663493 ACAAAAATGTTCTTTTCCAGACCAAAA 59.337 29.630 0.00 0.00 25.65 2.44
2984 7025 7.164803 ACAAAAATGTTCTTTTCCAGACCAAA 58.835 30.769 0.00 0.00 25.65 3.28
2985 7026 6.706295 ACAAAAATGTTCTTTTCCAGACCAA 58.294 32.000 0.00 0.00 25.65 3.67
2986 7027 6.293004 ACAAAAATGTTCTTTTCCAGACCA 57.707 33.333 0.00 0.00 0.00 4.02
2987 7028 7.384932 CCATACAAAAATGTTCTTTTCCAGACC 59.615 37.037 0.00 0.00 0.00 3.85
2988 7029 7.926018 ACCATACAAAAATGTTCTTTTCCAGAC 59.074 33.333 0.00 0.00 0.00 3.51
2989 7030 8.017418 ACCATACAAAAATGTTCTTTTCCAGA 57.983 30.769 0.00 0.00 0.00 3.86
2990 7031 8.143835 AGACCATACAAAAATGTTCTTTTCCAG 58.856 33.333 0.00 0.00 24.98 3.86
2991 7032 8.017418 AGACCATACAAAAATGTTCTTTTCCA 57.983 30.769 0.00 0.00 24.98 3.53
2992 7033 7.598869 GGAGACCATACAAAAATGTTCTTTTCC 59.401 37.037 0.00 0.00 29.68 3.13
2993 7034 8.360390 AGGAGACCATACAAAAATGTTCTTTTC 58.640 33.333 0.00 0.00 29.68 2.29
2994 7035 8.143835 CAGGAGACCATACAAAAATGTTCTTTT 58.856 33.333 0.00 0.00 29.68 2.27
2995 7036 7.287696 ACAGGAGACCATACAAAAATGTTCTTT 59.712 33.333 0.00 0.00 29.68 2.52
2996 7037 6.777580 ACAGGAGACCATACAAAAATGTTCTT 59.222 34.615 0.00 0.00 29.68 2.52
2997 7038 6.306987 ACAGGAGACCATACAAAAATGTTCT 58.693 36.000 0.00 0.00 31.94 3.01
2998 7039 6.575162 ACAGGAGACCATACAAAAATGTTC 57.425 37.500 0.00 0.00 0.00 3.18
2999 7040 6.549364 TCAACAGGAGACCATACAAAAATGTT 59.451 34.615 0.00 0.00 0.00 2.71
3000 7041 6.016276 GTCAACAGGAGACCATACAAAAATGT 60.016 38.462 0.00 0.00 0.00 2.71
3001 7042 6.207417 AGTCAACAGGAGACCATACAAAAATG 59.793 38.462 0.00 0.00 36.68 2.32
3002 7043 6.306987 AGTCAACAGGAGACCATACAAAAAT 58.693 36.000 0.00 0.00 36.68 1.82
3003 7044 5.690865 AGTCAACAGGAGACCATACAAAAA 58.309 37.500 0.00 0.00 36.68 1.94
3004 7045 5.163248 TGAGTCAACAGGAGACCATACAAAA 60.163 40.000 0.00 0.00 36.68 2.44
3005 7046 4.346709 TGAGTCAACAGGAGACCATACAAA 59.653 41.667 0.00 0.00 36.68 2.83
3006 7047 3.901222 TGAGTCAACAGGAGACCATACAA 59.099 43.478 0.00 0.00 36.68 2.41
3007 7048 3.506398 TGAGTCAACAGGAGACCATACA 58.494 45.455 0.00 0.00 36.68 2.29
3008 7049 4.116747 CTGAGTCAACAGGAGACCATAC 57.883 50.000 0.00 0.00 36.68 2.39
3018 7059 2.061773 CGCAAGTACCTGAGTCAACAG 58.938 52.381 0.00 0.00 37.61 3.16
3019 7060 1.872237 GCGCAAGTACCTGAGTCAACA 60.872 52.381 0.30 0.00 41.68 3.33
3020 7061 0.790814 GCGCAAGTACCTGAGTCAAC 59.209 55.000 0.30 0.00 41.68 3.18
3021 7062 0.320421 GGCGCAAGTACCTGAGTCAA 60.320 55.000 10.83 0.00 41.68 3.18
3022 7063 1.292223 GGCGCAAGTACCTGAGTCA 59.708 57.895 10.83 0.00 41.68 3.41
3023 7064 1.448013 GGGCGCAAGTACCTGAGTC 60.448 63.158 10.83 0.00 41.68 3.36
3024 7065 2.663196 GGGCGCAAGTACCTGAGT 59.337 61.111 10.83 0.00 41.68 3.41
3025 7066 1.327690 TAGGGGCGCAAGTACCTGAG 61.328 60.000 10.83 0.00 43.64 3.35
3026 7067 0.689745 ATAGGGGCGCAAGTACCTGA 60.690 55.000 10.83 0.00 43.64 3.86
3027 7068 0.180406 AATAGGGGCGCAAGTACCTG 59.820 55.000 10.83 0.00 43.64 4.00
3028 7069 0.916809 AAATAGGGGCGCAAGTACCT 59.083 50.000 10.83 10.79 45.30 3.08
3029 7070 1.306148 GAAATAGGGGCGCAAGTACC 58.694 55.000 10.83 0.00 41.68 3.34
3030 7071 2.032680 TGAAATAGGGGCGCAAGTAC 57.967 50.000 10.83 0.00 41.68 2.73
3031 7072 2.171659 TGATGAAATAGGGGCGCAAGTA 59.828 45.455 10.83 0.00 41.68 2.24
3032 7073 1.064758 TGATGAAATAGGGGCGCAAGT 60.065 47.619 10.83 0.00 41.68 3.16
3033 7074 1.334869 GTGATGAAATAGGGGCGCAAG 59.665 52.381 10.83 0.00 43.44 4.01
3034 7075 1.340502 TGTGATGAAATAGGGGCGCAA 60.341 47.619 10.83 0.00 0.00 4.85
3035 7076 0.254462 TGTGATGAAATAGGGGCGCA 59.746 50.000 10.83 0.00 0.00 6.09
3036 7077 1.388547 TTGTGATGAAATAGGGGCGC 58.611 50.000 0.00 0.00 0.00 6.53
3037 7078 4.339247 AGAAATTGTGATGAAATAGGGGCG 59.661 41.667 0.00 0.00 0.00 6.13
3038 7079 5.859205 AGAAATTGTGATGAAATAGGGGC 57.141 39.130 0.00 0.00 0.00 5.80
3039 7080 7.093814 TGACAAGAAATTGTGATGAAATAGGGG 60.094 37.037 0.00 0.00 34.90 4.79
3040 7081 7.829725 TGACAAGAAATTGTGATGAAATAGGG 58.170 34.615 0.00 0.00 34.90 3.53
3067 7108 9.866655 AAACTGGGACAAATACATATGACATAT 57.133 29.630 10.38 1.87 38.70 1.78
3068 7109 9.693739 AAAACTGGGACAAATACATATGACATA 57.306 29.630 10.38 0.00 38.70 2.29
3069 7110 8.593945 AAAACTGGGACAAATACATATGACAT 57.406 30.769 10.38 0.00 38.70 3.06
3070 7111 9.693739 ATAAAACTGGGACAAATACATATGACA 57.306 29.630 10.38 0.00 38.70 3.58
3072 7113 9.913310 TGATAAAACTGGGACAAATACATATGA 57.087 29.630 10.38 0.00 38.70 2.15
3073 7114 9.950680 GTGATAAAACTGGGACAAATACATATG 57.049 33.333 0.00 0.00 38.70 1.78
3074 7115 9.920946 AGTGATAAAACTGGGACAAATACATAT 57.079 29.630 0.00 0.00 38.70 1.78
3076 7117 9.920946 ATAGTGATAAAACTGGGACAAATACAT 57.079 29.630 0.00 0.00 38.70 2.29
3077 7118 9.747898 AATAGTGATAAAACTGGGACAAATACA 57.252 29.630 0.00 0.00 38.70 2.29
3135 7176 2.250031 AGGAGGCATGCATGACAAAAA 58.750 42.857 33.44 0.00 38.64 1.94
3136 7177 1.927487 AGGAGGCATGCATGACAAAA 58.073 45.000 33.44 0.00 38.64 2.44
3137 7178 1.927487 AAGGAGGCATGCATGACAAA 58.073 45.000 33.44 0.00 38.64 2.83
3138 7179 1.927487 AAAGGAGGCATGCATGACAA 58.073 45.000 33.44 0.00 38.64 3.18
3139 7180 1.927487 AAAAGGAGGCATGCATGACA 58.073 45.000 33.44 0.00 38.64 3.58
3140 7181 3.429410 GGTAAAAAGGAGGCATGCATGAC 60.429 47.826 30.64 28.31 35.53 3.06
3141 7182 2.760092 GGTAAAAAGGAGGCATGCATGA 59.240 45.455 30.64 1.78 0.00 3.07
3142 7183 2.159057 GGGTAAAAAGGAGGCATGCATG 60.159 50.000 22.70 22.70 0.00 4.06
3143 7184 2.110578 GGGTAAAAAGGAGGCATGCAT 58.889 47.619 21.36 13.78 0.00 3.96
3144 7185 1.077005 AGGGTAAAAAGGAGGCATGCA 59.923 47.619 21.36 0.00 0.00 3.96
3145 7186 1.852633 AGGGTAAAAAGGAGGCATGC 58.147 50.000 9.90 9.90 0.00 4.06
3146 7187 4.890158 AAAAGGGTAAAAAGGAGGCATG 57.110 40.909 0.00 0.00 0.00 4.06
3147 7188 4.904853 TGAAAAAGGGTAAAAAGGAGGCAT 59.095 37.500 0.00 0.00 0.00 4.40
3148 7189 4.290942 TGAAAAAGGGTAAAAAGGAGGCA 58.709 39.130 0.00 0.00 0.00 4.75
3149 7190 4.948341 TGAAAAAGGGTAAAAAGGAGGC 57.052 40.909 0.00 0.00 0.00 4.70
3150 7191 5.237815 GCATGAAAAAGGGTAAAAAGGAGG 58.762 41.667 0.00 0.00 0.00 4.30
3151 7192 4.923281 CGCATGAAAAAGGGTAAAAAGGAG 59.077 41.667 0.00 0.00 0.00 3.69
3152 7193 4.342665 ACGCATGAAAAAGGGTAAAAAGGA 59.657 37.500 0.00 0.00 0.00 3.36
3153 7194 4.447389 CACGCATGAAAAAGGGTAAAAAGG 59.553 41.667 0.00 0.00 0.00 3.11
3154 7195 5.047188 ACACGCATGAAAAAGGGTAAAAAG 58.953 37.500 0.00 0.00 0.00 2.27
3155 7196 5.012328 ACACGCATGAAAAAGGGTAAAAA 57.988 34.783 0.00 0.00 0.00 1.94
3156 7197 4.500035 GGACACGCATGAAAAAGGGTAAAA 60.500 41.667 0.00 0.00 0.00 1.52
3157 7198 3.004944 GGACACGCATGAAAAAGGGTAAA 59.995 43.478 0.00 0.00 0.00 2.01
3158 7199 2.554893 GGACACGCATGAAAAAGGGTAA 59.445 45.455 0.00 0.00 0.00 2.85
3159 7200 2.156098 GGACACGCATGAAAAAGGGTA 58.844 47.619 0.00 0.00 0.00 3.69
3160 7201 0.958822 GGACACGCATGAAAAAGGGT 59.041 50.000 0.00 0.00 0.00 4.34
3161 7202 3.792716 GGACACGCATGAAAAAGGG 57.207 52.632 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.