Multiple sequence alignment - TraesCS6A01G046900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G046900 chr6A 100.000 5471 0 0 1 5471 23873305 23878775 0.000000e+00 10104.0
1 TraesCS6A01G046900 chr6A 87.179 741 64 13 975 1702 77369554 77370276 0.000000e+00 813.0
2 TraesCS6A01G046900 chr6D 94.897 3214 92 19 1756 4940 25757650 25760820 0.000000e+00 4961.0
3 TraesCS6A01G046900 chr6D 87.438 804 55 23 795 1570 25756482 25757267 0.000000e+00 883.0
4 TraesCS6A01G046900 chr6D 95.556 450 20 0 5022 5471 25760819 25761268 0.000000e+00 721.0
5 TraesCS6A01G046900 chr6D 92.258 155 8 4 1555 1705 25757286 25757440 3.320000e-52 217.0
6 TraesCS6A01G046900 chr6D 83.929 56 8 1 5222 5277 141191491 141191437 1.000000e-02 52.8
7 TraesCS6A01G046900 chr6B 93.886 3042 120 33 1756 4772 41973237 41976237 0.000000e+00 4527.0
8 TraesCS6A01G046900 chr6B 88.227 739 53 16 981 1705 685496099 685495381 0.000000e+00 852.0
9 TraesCS6A01G046900 chr6B 85.877 701 86 6 1 694 41971399 41972093 0.000000e+00 734.0
10 TraesCS6A01G046900 chr6B 86.134 476 39 9 1241 1705 621064552 621064093 6.370000e-134 488.0
11 TraesCS6A01G046900 chr6B 95.397 239 10 1 5022 5260 41976364 41976601 4.000000e-101 379.0
12 TraesCS6A01G046900 chr6B 97.727 132 3 0 4806 4937 41976229 41976360 1.530000e-55 228.0
13 TraesCS6A01G046900 chr6B 96.212 132 5 0 5340 5471 41976597 41976728 3.320000e-52 217.0
14 TraesCS6A01G046900 chr6B 89.623 106 7 4 4927 5030 27387837 27387734 1.240000e-26 132.0
15 TraesCS6A01G046900 chr5B 89.218 742 47 17 975 1702 696003537 696004259 0.000000e+00 896.0
16 TraesCS6A01G046900 chr5B 88.005 742 56 16 975 1702 183146150 183146872 0.000000e+00 846.0
17 TraesCS6A01G046900 chr1A 88.211 738 56 16 981 1705 201971601 201970882 0.000000e+00 852.0
18 TraesCS6A01G046900 chr1A 87.989 741 58 13 975 1702 503204007 503204729 0.000000e+00 846.0
19 TraesCS6A01G046900 chr1A 87.719 741 60 13 975 1702 10358898 10359620 0.000000e+00 835.0
20 TraesCS6A01G046900 chr7A 87.957 739 56 14 981 1705 33683017 33682298 0.000000e+00 841.0
21 TraesCS6A01G046900 chr7B 88.314 676 46 13 1039 1702 1918367 1919021 0.000000e+00 780.0
22 TraesCS6A01G046900 chr7B 94.565 92 4 1 4934 5025 15307881 15307971 2.050000e-29 141.0
23 TraesCS6A01G046900 chr1B 88.296 675 48 12 1039 1702 113968383 113969037 0.000000e+00 780.0
24 TraesCS6A01G046900 chr1B 92.708 96 7 0 4931 5026 24513564 24513469 7.390000e-29 139.0
25 TraesCS6A01G046900 chr1B 94.444 90 5 0 4939 5028 568524120 568524209 7.390000e-29 139.0
26 TraesCS6A01G046900 chr3B 86.667 675 59 12 1039 1702 753288286 753288940 0.000000e+00 719.0
27 TraesCS6A01G046900 chr7D 96.552 87 3 0 4939 5025 626199969 626199883 1.590000e-30 145.0
28 TraesCS6A01G046900 chr5D 93.548 93 6 0 4933 5025 342696376 342696468 7.390000e-29 139.0
29 TraesCS6A01G046900 chr5D 93.548 93 5 1 4935 5027 56448548 56448457 2.660000e-28 137.0
30 TraesCS6A01G046900 chr5D 92.632 95 7 0 4932 5026 354874354 354874448 2.660000e-28 137.0
31 TraesCS6A01G046900 chr3D 91.000 100 7 2 4935 5033 47483344 47483246 3.440000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G046900 chr6A 23873305 23878775 5470 False 10104.0 10104 100.00000 1 5471 1 chr6A.!!$F1 5470
1 TraesCS6A01G046900 chr6A 77369554 77370276 722 False 813.0 813 87.17900 975 1702 1 chr6A.!!$F2 727
2 TraesCS6A01G046900 chr6D 25756482 25761268 4786 False 1695.5 4961 92.53725 795 5471 4 chr6D.!!$F1 4676
3 TraesCS6A01G046900 chr6B 41971399 41976728 5329 False 1217.0 4527 93.81980 1 5471 5 chr6B.!!$F1 5470
4 TraesCS6A01G046900 chr6B 685495381 685496099 718 True 852.0 852 88.22700 981 1705 1 chr6B.!!$R3 724
5 TraesCS6A01G046900 chr5B 696003537 696004259 722 False 896.0 896 89.21800 975 1702 1 chr5B.!!$F2 727
6 TraesCS6A01G046900 chr5B 183146150 183146872 722 False 846.0 846 88.00500 975 1702 1 chr5B.!!$F1 727
7 TraesCS6A01G046900 chr1A 201970882 201971601 719 True 852.0 852 88.21100 981 1705 1 chr1A.!!$R1 724
8 TraesCS6A01G046900 chr1A 503204007 503204729 722 False 846.0 846 87.98900 975 1702 1 chr1A.!!$F2 727
9 TraesCS6A01G046900 chr1A 10358898 10359620 722 False 835.0 835 87.71900 975 1702 1 chr1A.!!$F1 727
10 TraesCS6A01G046900 chr7A 33682298 33683017 719 True 841.0 841 87.95700 981 1705 1 chr7A.!!$R1 724
11 TraesCS6A01G046900 chr7B 1918367 1919021 654 False 780.0 780 88.31400 1039 1702 1 chr7B.!!$F1 663
12 TraesCS6A01G046900 chr1B 113968383 113969037 654 False 780.0 780 88.29600 1039 1702 1 chr1B.!!$F1 663
13 TraesCS6A01G046900 chr3B 753288286 753288940 654 False 719.0 719 86.66700 1039 1702 1 chr3B.!!$F1 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.035725 TAGAGTGGAAGCGACCTCGA 60.036 55.0 0.00 0.0 43.02 4.04 F
657 665 0.109532 TGGTGGCGATTTTGTCCAGA 59.890 50.0 0.00 0.0 0.00 3.86 F
700 708 0.187361 TTGTAGGGGCTGGCTTTGTT 59.813 50.0 0.00 0.0 0.00 2.83 F
1631 1750 0.386352 CTGCAGCAACATTGTGGTCG 60.386 55.0 0.00 0.0 0.00 4.79 F
2351 2784 0.652592 GTTCGTTGGATGATCTGCCG 59.347 55.0 0.00 0.0 0.00 5.69 F
2999 3439 0.666577 GGAAGTCTGACGAACCACCG 60.667 60.0 1.52 0.0 0.00 4.94 F
3297 3737 0.963962 ACCAATTTGCTGCCTCTGTG 59.036 50.0 0.00 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1537 0.319405 GCAGGAAATTTGTGCAGGCT 59.681 50.000 14.51 0.00 37.16 4.58 R
2427 2860 1.067516 GACAGAGCTGCCTGAGATCTC 59.932 57.143 16.21 16.21 44.50 2.75 R
2499 2935 4.440880 AGACTGAGCAGATTCATTAGCAC 58.559 43.478 4.21 0.00 0.00 4.40 R
2858 3298 0.918258 TGATGGCTGGCTGTTATGGA 59.082 50.000 2.00 0.00 0.00 3.41 R
3928 4371 1.501741 CAAAGTGAACCGGGATGCG 59.498 57.895 6.32 0.00 0.00 4.73 R
4243 4712 2.158957 TCCCGGACTTCACAGAATATGC 60.159 50.000 0.73 0.00 0.00 3.14 R
5251 5731 1.301677 CTGAAGGGGAAGTTCGCAGC 61.302 60.000 20.23 9.84 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.035725 TAGAGTGGAAGCGACCTCGA 60.036 55.000 0.00 0.00 43.02 4.04
42 43 4.717629 CCGTCAGTGCCTTCGCGA 62.718 66.667 3.71 3.71 38.08 5.87
67 68 3.667476 TGGCCTCCACCAGTCAAA 58.333 55.556 3.32 0.00 33.75 2.69
81 82 0.321653 GTCAAAGCGTGGGTGAGGAT 60.322 55.000 0.00 0.00 0.00 3.24
102 103 3.900888 GGAACCCTGAGTGTCCCA 58.099 61.111 0.00 0.00 0.00 4.37
113 114 2.092968 TGAGTGTCCCAATATGTGCCTC 60.093 50.000 0.00 0.00 0.00 4.70
114 115 1.915489 AGTGTCCCAATATGTGCCTCA 59.085 47.619 0.00 0.00 0.00 3.86
125 126 1.951209 TGTGCCTCATAGGGTCTTCA 58.049 50.000 0.00 0.00 35.37 3.02
126 127 1.555075 TGTGCCTCATAGGGTCTTCAC 59.445 52.381 0.00 0.00 35.37 3.18
132 133 0.179073 CATAGGGTCTTCACCGCTGG 60.179 60.000 0.00 0.00 44.91 4.85
150 151 1.617850 TGGCGAAATTGAGGCAACAAT 59.382 42.857 7.12 4.54 41.43 2.71
182 183 5.129320 GGAATAATGGTTCATTGGCTTTCCT 59.871 40.000 3.65 0.00 35.54 3.36
198 204 5.163612 GGCTTTCCTAATGTTGATGTCCTTC 60.164 44.000 0.00 0.00 0.00 3.46
201 207 7.309438 GCTTTCCTAATGTTGATGTCCTTCTTT 60.309 37.037 0.00 0.00 0.00 2.52
203 209 6.542821 TCCTAATGTTGATGTCCTTCTTTGT 58.457 36.000 0.00 0.00 0.00 2.83
224 230 3.159213 AGTGGCATTGATGAGTTGGAA 57.841 42.857 0.00 0.00 0.00 3.53
233 239 6.684686 CATTGATGAGTTGGAAGATGTTGTT 58.315 36.000 0.00 0.00 0.00 2.83
237 243 4.780815 TGAGTTGGAAGATGTTGTTGACT 58.219 39.130 0.00 0.00 0.00 3.41
251 257 2.236146 TGTTGACTGTTGGACACTCTGT 59.764 45.455 0.00 0.00 0.00 3.41
258 264 0.817634 TTGGACACTCTGTTTGGCGG 60.818 55.000 0.00 0.00 0.00 6.13
276 282 1.670811 CGGGATACTGTTTGTCCATGC 59.329 52.381 8.26 0.00 38.54 4.06
325 331 6.248631 GCTTTGTGACGTGTTTATATTCTCC 58.751 40.000 0.00 0.00 0.00 3.71
333 339 5.189145 ACGTGTTTATATTCTCCAGTTCCCT 59.811 40.000 0.00 0.00 0.00 4.20
341 347 0.543749 CTCCAGTTCCCTGTCCATCC 59.456 60.000 0.00 0.00 36.95 3.51
367 373 3.773418 TGCTCTACTAGATACCGCTCT 57.227 47.619 0.00 0.00 0.00 4.09
371 377 4.633175 CTCTACTAGATACCGCTCTGTCA 58.367 47.826 0.00 0.00 0.00 3.58
406 412 1.764571 TTGTGTCCCTTCCCCTGTCG 61.765 60.000 0.00 0.00 0.00 4.35
408 414 2.606826 GTCCCTTCCCCTGTCGGT 60.607 66.667 0.00 0.00 0.00 4.69
409 415 2.284405 TCCCTTCCCCTGTCGGTC 60.284 66.667 0.00 0.00 0.00 4.79
417 425 2.261671 CCTGTCGGTCGAGTTGGG 59.738 66.667 0.00 0.00 0.00 4.12
421 429 0.682852 TGTCGGTCGAGTTGGGATTT 59.317 50.000 0.00 0.00 0.00 2.17
441 449 1.332195 TCATATGACCCTCCTCAGCG 58.668 55.000 0.00 0.00 0.00 5.18
442 450 0.320247 CATATGACCCTCCTCAGCGC 60.320 60.000 0.00 0.00 0.00 5.92
444 452 2.871795 TATGACCCTCCTCAGCGCCA 62.872 60.000 2.29 0.00 0.00 5.69
489 497 4.835678 TCTAGTATATATGTGGTCGCCGA 58.164 43.478 0.00 0.00 0.00 5.54
503 511 0.814410 CGCCGACCTCTACTGCTCTA 60.814 60.000 0.00 0.00 0.00 2.43
506 514 2.577700 CCGACCTCTACTGCTCTACAT 58.422 52.381 0.00 0.00 0.00 2.29
512 520 3.628032 CCTCTACTGCTCTACATCAACGA 59.372 47.826 0.00 0.00 0.00 3.85
513 521 4.496673 CCTCTACTGCTCTACATCAACGAC 60.497 50.000 0.00 0.00 0.00 4.34
515 523 3.944055 ACTGCTCTACATCAACGACTT 57.056 42.857 0.00 0.00 0.00 3.01
517 525 3.005897 ACTGCTCTACATCAACGACTTGT 59.994 43.478 0.00 0.00 0.00 3.16
526 534 1.956170 AACGACTTGTCGGCTGCTG 60.956 57.895 23.99 0.95 37.45 4.41
530 538 1.905922 GACTTGTCGGCTGCTGCTTC 61.906 60.000 15.64 6.85 39.59 3.86
558 566 4.096984 AGCTTCTGACTTTCAACAAGGTTG 59.903 41.667 2.77 2.77 28.38 3.77
575 583 3.581332 AGGTTGTTTCGATAAGGTGGAGA 59.419 43.478 0.00 0.00 0.00 3.71
580 588 5.902681 TGTTTCGATAAGGTGGAGACATAG 58.097 41.667 0.00 0.00 46.14 2.23
585 593 2.254152 AAGGTGGAGACATAGAGGCA 57.746 50.000 0.00 0.00 46.14 4.75
586 594 2.485966 AGGTGGAGACATAGAGGCAT 57.514 50.000 0.00 0.00 46.14 4.40
591 599 3.133721 GTGGAGACATAGAGGCATCAACT 59.866 47.826 0.00 0.00 46.14 3.16
600 608 2.843113 AGAGGCATCAACTAGCTTTCCT 59.157 45.455 0.00 0.00 0.00 3.36
601 609 4.033709 AGAGGCATCAACTAGCTTTCCTA 58.966 43.478 0.00 0.00 0.00 2.94
603 611 5.131809 AGAGGCATCAACTAGCTTTCCTAAT 59.868 40.000 0.00 0.00 0.00 1.73
609 617 3.887621 ACTAGCTTTCCTAATGACGCA 57.112 42.857 0.00 0.00 0.00 5.24
610 618 4.202245 ACTAGCTTTCCTAATGACGCAA 57.798 40.909 0.00 0.00 0.00 4.85
611 619 4.770795 ACTAGCTTTCCTAATGACGCAAT 58.229 39.130 0.00 0.00 0.00 3.56
613 621 2.684881 AGCTTTCCTAATGACGCAATGG 59.315 45.455 0.00 0.00 0.00 3.16
617 625 1.095228 CCTAATGACGCAATGGCCGT 61.095 55.000 0.00 0.00 36.38 5.68
618 626 0.304705 CTAATGACGCAATGGCCGTC 59.695 55.000 0.00 1.03 41.05 4.79
621 629 2.742372 GACGCAATGGCCGTCAGT 60.742 61.111 0.00 0.00 40.66 3.41
625 633 1.647545 CGCAATGGCCGTCAGTGAAT 61.648 55.000 4.28 0.00 43.46 2.57
626 634 0.179156 GCAATGGCCGTCAGTGAATG 60.179 55.000 4.28 0.00 43.46 2.67
630 638 0.249120 TGGCCGTCAGTGAATGTAGG 59.751 55.000 0.00 0.00 0.00 3.18
638 646 4.098654 CGTCAGTGAATGTAGGAGGAAGAT 59.901 45.833 0.00 0.00 0.00 2.40
639 647 5.355596 GTCAGTGAATGTAGGAGGAAGATG 58.644 45.833 0.00 0.00 0.00 2.90
641 649 4.163078 CAGTGAATGTAGGAGGAAGATGGT 59.837 45.833 0.00 0.00 0.00 3.55
643 651 3.455910 TGAATGTAGGAGGAAGATGGTGG 59.544 47.826 0.00 0.00 0.00 4.61
644 652 1.204146 TGTAGGAGGAAGATGGTGGC 58.796 55.000 0.00 0.00 0.00 5.01
650 658 2.369394 GAGGAAGATGGTGGCGATTTT 58.631 47.619 0.00 0.00 0.00 1.82
651 659 2.094675 AGGAAGATGGTGGCGATTTTG 58.905 47.619 0.00 0.00 0.00 2.44
653 661 2.159379 GGAAGATGGTGGCGATTTTGTC 60.159 50.000 0.00 0.00 0.00 3.18
654 662 1.463674 AGATGGTGGCGATTTTGTCC 58.536 50.000 0.00 0.00 0.00 4.02
657 665 0.109532 TGGTGGCGATTTTGTCCAGA 59.890 50.000 0.00 0.00 0.00 3.86
661 669 2.293399 GTGGCGATTTTGTCCAGAAACT 59.707 45.455 0.00 0.00 0.00 2.66
665 673 3.975035 GCGATTTTGTCCAGAAACTTGTC 59.025 43.478 0.00 0.00 0.00 3.18
673 681 7.639113 TTGTCCAGAAACTTGTCTGTAATTT 57.361 32.000 1.84 0.00 43.02 1.82
677 685 9.052759 GTCCAGAAACTTGTCTGTAATTTCTTA 57.947 33.333 1.84 0.00 43.02 2.10
694 702 4.367039 TCTTATTATTGTAGGGGCTGGC 57.633 45.455 0.00 0.00 0.00 4.85
695 703 3.980698 TCTTATTATTGTAGGGGCTGGCT 59.019 43.478 0.00 0.00 0.00 4.75
698 706 2.435372 TATTGTAGGGGCTGGCTTTG 57.565 50.000 0.00 0.00 0.00 2.77
699 707 0.409484 ATTGTAGGGGCTGGCTTTGT 59.591 50.000 0.00 0.00 0.00 2.83
700 708 0.187361 TTGTAGGGGCTGGCTTTGTT 59.813 50.000 0.00 0.00 0.00 2.83
701 709 0.187361 TGTAGGGGCTGGCTTTGTTT 59.813 50.000 0.00 0.00 0.00 2.83
702 710 1.338107 GTAGGGGCTGGCTTTGTTTT 58.662 50.000 0.00 0.00 0.00 2.43
703 711 2.158445 TGTAGGGGCTGGCTTTGTTTTA 60.158 45.455 0.00 0.00 0.00 1.52
704 712 2.325661 AGGGGCTGGCTTTGTTTTAT 57.674 45.000 0.00 0.00 0.00 1.40
705 713 3.466395 AGGGGCTGGCTTTGTTTTATA 57.534 42.857 0.00 0.00 0.00 0.98
706 714 3.994317 AGGGGCTGGCTTTGTTTTATAT 58.006 40.909 0.00 0.00 0.00 0.86
707 715 5.137412 AGGGGCTGGCTTTGTTTTATATA 57.863 39.130 0.00 0.00 0.00 0.86
708 716 5.715921 AGGGGCTGGCTTTGTTTTATATAT 58.284 37.500 0.00 0.00 0.00 0.86
709 717 5.539955 AGGGGCTGGCTTTGTTTTATATATG 59.460 40.000 0.00 0.00 0.00 1.78
710 718 5.538433 GGGGCTGGCTTTGTTTTATATATGA 59.462 40.000 0.00 0.00 0.00 2.15
711 719 6.447162 GGGCTGGCTTTGTTTTATATATGAC 58.553 40.000 0.00 0.00 0.00 3.06
712 720 6.447162 GGCTGGCTTTGTTTTATATATGACC 58.553 40.000 0.00 0.00 0.00 4.02
713 721 6.265422 GGCTGGCTTTGTTTTATATATGACCT 59.735 38.462 0.00 0.00 0.00 3.85
714 722 7.201911 GGCTGGCTTTGTTTTATATATGACCTT 60.202 37.037 0.00 0.00 0.00 3.50
715 723 7.862873 GCTGGCTTTGTTTTATATATGACCTTC 59.137 37.037 0.00 0.00 0.00 3.46
716 724 8.232913 TGGCTTTGTTTTATATATGACCTTCC 57.767 34.615 0.00 0.00 0.00 3.46
717 725 7.012894 TGGCTTTGTTTTATATATGACCTTCCG 59.987 37.037 0.00 0.00 0.00 4.30
718 726 6.856426 GCTTTGTTTTATATATGACCTTCCGC 59.144 38.462 0.00 0.00 0.00 5.54
719 727 7.255139 GCTTTGTTTTATATATGACCTTCCGCT 60.255 37.037 0.00 0.00 0.00 5.52
720 728 8.514330 TTTGTTTTATATATGACCTTCCGCTT 57.486 30.769 0.00 0.00 0.00 4.68
721 729 8.514330 TTGTTTTATATATGACCTTCCGCTTT 57.486 30.769 0.00 0.00 0.00 3.51
722 730 8.514330 TGTTTTATATATGACCTTCCGCTTTT 57.486 30.769 0.00 0.00 0.00 2.27
723 731 9.616156 TGTTTTATATATGACCTTCCGCTTTTA 57.384 29.630 0.00 0.00 0.00 1.52
734 742 9.796120 TGACCTTCCGCTTTTAATATATTTTTG 57.204 29.630 2.68 0.00 0.00 2.44
735 743 8.642908 ACCTTCCGCTTTTAATATATTTTTGC 57.357 30.769 2.68 3.37 0.00 3.68
736 744 8.254508 ACCTTCCGCTTTTAATATATTTTTGCA 58.745 29.630 2.68 0.00 0.00 4.08
737 745 9.092876 CCTTCCGCTTTTAATATATTTTTGCAA 57.907 29.630 2.68 0.00 0.00 4.08
767 775 8.863049 AGAATCGAATATGTTTGTGAAAAATGC 58.137 29.630 0.00 0.00 0.00 3.56
768 776 6.942886 TCGAATATGTTTGTGAAAAATGCC 57.057 33.333 0.00 0.00 0.00 4.40
769 777 6.450545 TCGAATATGTTTGTGAAAAATGCCA 58.549 32.000 0.00 0.00 0.00 4.92
770 778 6.925718 TCGAATATGTTTGTGAAAAATGCCAA 59.074 30.769 0.00 0.00 0.00 4.52
771 779 7.008859 CGAATATGTTTGTGAAAAATGCCAAC 58.991 34.615 0.00 0.00 0.00 3.77
772 780 7.095691 CGAATATGTTTGTGAAAAATGCCAACT 60.096 33.333 0.00 0.00 0.00 3.16
773 781 9.202273 GAATATGTTTGTGAAAAATGCCAACTA 57.798 29.630 0.00 0.00 0.00 2.24
774 782 6.843069 ATGTTTGTGAAAAATGCCAACTAC 57.157 33.333 0.00 0.00 0.00 2.73
775 783 5.724328 TGTTTGTGAAAAATGCCAACTACA 58.276 33.333 0.00 0.00 0.00 2.74
776 784 6.344500 TGTTTGTGAAAAATGCCAACTACAT 58.656 32.000 0.00 0.00 0.00 2.29
777 785 6.820656 TGTTTGTGAAAAATGCCAACTACATT 59.179 30.769 0.00 0.00 39.38 2.71
778 786 7.335422 TGTTTGTGAAAAATGCCAACTACATTT 59.665 29.630 0.00 0.00 46.85 2.32
819 827 5.981174 CCAACTGAATTAATGGCAGGAAAT 58.019 37.500 17.83 0.00 34.05 2.17
827 835 6.811634 ATTAATGGCAGGAAATGAAATCCA 57.188 33.333 0.00 0.00 39.55 3.41
868 880 3.721706 CCAGTGGCCCAGGTCTCC 61.722 72.222 0.00 0.00 0.00 3.71
880 892 1.821753 CAGGTCTCCAACTCTCGATGT 59.178 52.381 0.00 0.00 0.00 3.06
881 893 3.017442 CAGGTCTCCAACTCTCGATGTA 58.983 50.000 0.00 0.00 0.00 2.29
882 894 3.634448 CAGGTCTCCAACTCTCGATGTAT 59.366 47.826 0.00 0.00 0.00 2.29
961 975 4.767255 GGACGCCAGCCACCAGAG 62.767 72.222 0.00 0.00 0.00 3.35
979 1014 4.079850 CAGAGCAGAGCACCGCCT 62.080 66.667 0.00 0.00 0.00 5.52
993 1028 3.535962 GCCTCTCCTCCTCCGCAG 61.536 72.222 0.00 0.00 0.00 5.18
994 1029 3.535962 CCTCTCCTCCTCCGCAGC 61.536 72.222 0.00 0.00 0.00 5.25
1306 1350 2.187946 CATCCACTCCGCTCCACC 59.812 66.667 0.00 0.00 0.00 4.61
1310 1354 2.659063 CCACTCCGCTCCACCATCA 61.659 63.158 0.00 0.00 0.00 3.07
1334 1388 6.695713 CACATTCGTCTCGTTCCAATCTAATA 59.304 38.462 0.00 0.00 0.00 0.98
1335 1389 6.918569 ACATTCGTCTCGTTCCAATCTAATAG 59.081 38.462 0.00 0.00 0.00 1.73
1336 1390 6.446781 TTCGTCTCGTTCCAATCTAATAGT 57.553 37.500 0.00 0.00 0.00 2.12
1337 1391 7.558161 TTCGTCTCGTTCCAATCTAATAGTA 57.442 36.000 0.00 0.00 0.00 1.82
1383 1449 2.351738 CCCTTCATGTTTCTTTCACGGC 60.352 50.000 0.00 0.00 0.00 5.68
1464 1537 0.401738 CTTCTTCTCCAACCCCTGCA 59.598 55.000 0.00 0.00 0.00 4.41
1465 1538 0.401738 TTCTTCTCCAACCCCTGCAG 59.598 55.000 6.78 6.78 0.00 4.41
1466 1539 1.676967 CTTCTCCAACCCCTGCAGC 60.677 63.158 8.66 0.00 0.00 5.25
1467 1540 3.210012 TTCTCCAACCCCTGCAGCC 62.210 63.158 8.66 0.00 0.00 4.85
1468 1541 3.655211 CTCCAACCCCTGCAGCCT 61.655 66.667 8.66 0.00 0.00 4.58
1469 1542 3.933048 CTCCAACCCCTGCAGCCTG 62.933 68.421 8.66 0.59 0.00 4.85
1488 1562 1.068895 TGCACAAATTTCCTGCTGTGG 59.931 47.619 15.25 0.00 39.63 4.17
1489 1563 1.340889 GCACAAATTTCCTGCTGTGGA 59.659 47.619 9.29 0.00 39.63 4.02
1495 1569 2.957402 TTTCCTGCTGTGGAATGTCT 57.043 45.000 7.11 0.00 44.55 3.41
1544 1625 8.236586 TGATTCTAGTGACATATGCACAAAAAC 58.763 33.333 23.27 15.61 38.70 2.43
1631 1750 0.386352 CTGCAGCAACATTGTGGTCG 60.386 55.000 0.00 0.00 0.00 4.79
1641 1766 3.220507 CATTGTGGTCGTCAATGCATT 57.779 42.857 5.99 5.99 43.18 3.56
1671 1800 6.877236 TGACTAGTGATTGATGCACATAGAA 58.123 36.000 0.00 0.00 38.70 2.10
1707 1997 1.443407 CGGATGCACCCACCTCTAG 59.557 63.158 0.00 0.00 34.64 2.43
1718 2008 2.158986 CCCACCTCTAGCATGTTCTCTG 60.159 54.545 0.00 0.00 0.00 3.35
1723 2013 3.068024 CCTCTAGCATGTTCTCTGTCTCC 59.932 52.174 0.00 0.00 0.00 3.71
1725 2015 3.951037 TCTAGCATGTTCTCTGTCTCCTC 59.049 47.826 0.00 0.00 0.00 3.71
1726 2016 1.476085 AGCATGTTCTCTGTCTCCTCG 59.524 52.381 0.00 0.00 0.00 4.63
1727 2017 1.919918 CATGTTCTCTGTCTCCTCGC 58.080 55.000 0.00 0.00 0.00 5.03
1728 2018 1.203287 CATGTTCTCTGTCTCCTCGCA 59.797 52.381 0.00 0.00 0.00 5.10
1733 2023 3.032017 TCTCTGTCTCCTCGCAAAAAG 57.968 47.619 0.00 0.00 0.00 2.27
1735 2025 3.069586 TCTCTGTCTCCTCGCAAAAAGAA 59.930 43.478 0.00 0.00 0.00 2.52
1738 2028 3.804036 TGTCTCCTCGCAAAAAGAAGAA 58.196 40.909 0.00 0.00 0.00 2.52
1739 2029 4.196193 TGTCTCCTCGCAAAAAGAAGAAA 58.804 39.130 0.00 0.00 0.00 2.52
1740 2030 4.638421 TGTCTCCTCGCAAAAAGAAGAAAA 59.362 37.500 0.00 0.00 0.00 2.29
1741 2031 4.970611 GTCTCCTCGCAAAAAGAAGAAAAC 59.029 41.667 0.00 0.00 0.00 2.43
1742 2032 4.638421 TCTCCTCGCAAAAAGAAGAAAACA 59.362 37.500 0.00 0.00 0.00 2.83
1743 2033 5.299279 TCTCCTCGCAAAAAGAAGAAAACAT 59.701 36.000 0.00 0.00 0.00 2.71
1744 2034 5.280945 TCCTCGCAAAAAGAAGAAAACATG 58.719 37.500 0.00 0.00 0.00 3.21
1746 2036 5.519927 CCTCGCAAAAAGAAGAAAACATGTT 59.480 36.000 4.92 4.92 0.00 2.71
1747 2037 6.035975 CCTCGCAAAAAGAAGAAAACATGTTT 59.964 34.615 18.13 18.13 0.00 2.83
1748 2038 6.760127 TCGCAAAAAGAAGAAAACATGTTTG 58.240 32.000 23.93 9.58 32.36 2.93
1749 2039 6.367422 TCGCAAAAAGAAGAAAACATGTTTGT 59.633 30.769 23.93 13.90 37.82 2.83
1830 2254 2.161012 GTCATCGTGTTGTCGGAGAGTA 59.839 50.000 0.00 0.00 36.95 2.59
1846 2270 6.583806 TCGGAGAGTACGAGTTTGTTTATTTC 59.416 38.462 0.00 0.00 35.12 2.17
1920 2351 6.128172 GGTTGATGTTAGACTGATGTTTGGAG 60.128 42.308 0.00 0.00 0.00 3.86
1965 2396 1.337071 GATCACGCCGATTCACCTCTA 59.663 52.381 0.00 0.00 33.17 2.43
2281 2714 2.749621 GCTTCATGGGTGACTAAAGTGG 59.250 50.000 0.00 0.00 33.11 4.00
2351 2784 0.652592 GTTCGTTGGATGATCTGCCG 59.347 55.000 0.00 0.00 0.00 5.69
2427 2860 1.511850 TGCTGATGACAACGAAGGTG 58.488 50.000 0.00 0.00 0.00 4.00
2499 2935 1.934220 TTACTCCGACGAGCTGCTGG 61.934 60.000 7.01 8.90 40.03 4.85
2516 2952 2.290093 GCTGGTGCTAATGAATCTGCTC 59.710 50.000 0.00 0.00 36.03 4.26
2556 2996 6.485984 ACTGAAAATTGCATTTTTATGCCACA 59.514 30.769 16.90 10.04 46.43 4.17
2558 2998 8.557592 TGAAAATTGCATTTTTATGCCACATA 57.442 26.923 16.90 0.00 46.43 2.29
2595 3035 5.661056 TTGTTCTATACAGGACCTGACTG 57.339 43.478 28.56 13.95 38.19 3.51
2598 3038 5.185249 TGTTCTATACAGGACCTGACTGAAC 59.815 44.000 28.56 27.60 39.24 3.18
2777 3217 2.418976 CTGAACATGAGCAGGATGTGTG 59.581 50.000 0.00 0.00 39.31 3.82
2778 3218 2.224597 TGAACATGAGCAGGATGTGTGT 60.225 45.455 0.00 0.00 39.31 3.72
2819 3259 4.638865 GCAGGTTTACCATGGGTAGTTAAG 59.361 45.833 18.09 0.55 39.52 1.85
2861 3301 7.994425 TTATTAATGTGAGCAGAAAAGTCCA 57.006 32.000 0.00 0.00 0.00 4.02
2959 3399 7.105588 TCAGATATTGCTTGTAACTGATGTGT 58.894 34.615 0.00 0.00 29.46 3.72
2999 3439 0.666577 GGAAGTCTGACGAACCACCG 60.667 60.000 1.52 0.00 0.00 4.94
3184 3624 2.586258 ACTATTGTAGCACAGGAGCG 57.414 50.000 0.00 0.00 40.15 5.03
3297 3737 0.963962 ACCAATTTGCTGCCTCTGTG 59.036 50.000 0.00 0.00 0.00 3.66
3318 3758 2.485814 GCCTGCTGTTCTCTTTAACCTG 59.514 50.000 0.00 0.00 0.00 4.00
3390 3833 5.484173 TCCTTATAAGCATTTTGAGTGCG 57.516 39.130 6.99 0.00 46.86 5.34
3501 3944 8.625786 TTTCTCAGTTTACCCCAGTATTTTAC 57.374 34.615 0.00 0.00 0.00 2.01
3533 3976 4.212847 GCGTGACTACTCGAAGGTATCATA 59.787 45.833 0.00 0.00 35.44 2.15
3589 4032 7.915508 TGTGTTTCTGTCTGTAACTAACATTG 58.084 34.615 0.00 0.00 37.50 2.82
3682 4125 3.650647 CCAGGTAGCACATGGTTGT 57.349 52.632 10.57 0.00 44.42 3.32
3683 4126 2.779755 CCAGGTAGCACATGGTTGTA 57.220 50.000 10.57 0.00 44.42 2.41
3684 4127 2.632377 CCAGGTAGCACATGGTTGTAG 58.368 52.381 10.57 0.00 44.42 2.74
3685 4128 2.236146 CCAGGTAGCACATGGTTGTAGA 59.764 50.000 10.57 0.00 44.42 2.59
3686 4129 3.262420 CAGGTAGCACATGGTTGTAGAC 58.738 50.000 0.00 0.00 33.76 2.59
3704 4147 3.955650 GACTTGTAGTCTTGGCCACTA 57.044 47.619 3.88 0.00 41.88 2.74
3806 4249 4.250464 TCCTCCAATTCATCGTGTTGTAC 58.750 43.478 0.00 0.00 0.00 2.90
3846 4289 1.590932 GCATCACCATCAGCTACTGG 58.409 55.000 11.29 11.29 38.55 4.00
4091 4534 1.003580 CAAGAAGAGGTAGGCAGCCAA 59.996 52.381 15.80 0.00 0.00 4.52
4243 4712 7.911727 TCTCAAGCAATTTATTTGACATGATCG 59.088 33.333 0.00 0.00 37.53 3.69
4363 4834 7.465353 TTGCAATCCTTCACATCTGAATTTA 57.535 32.000 0.00 0.00 35.78 1.40
4399 4870 6.805271 CACTTTTACCAGCTGAAAATGAGATG 59.195 38.462 17.39 8.22 0.00 2.90
4488 4959 2.666190 GACGCAGCTGCTGGTTCA 60.666 61.111 34.22 0.00 39.32 3.18
4495 4966 3.726517 CTGCTGGTTCAACGCCGG 61.727 66.667 0.00 0.00 35.53 6.13
4583 5062 4.529769 ACAGAGTGTTCATGAATCCTGAGA 59.470 41.667 23.60 0.00 0.00 3.27
4597 5076 5.820404 ATCCTGAGATGATGATGCAACTA 57.180 39.130 0.00 0.00 0.00 2.24
4600 5079 6.598503 TCCTGAGATGATGATGCAACTAAAT 58.401 36.000 0.00 0.00 0.00 1.40
4735 5214 4.758688 TGGTGATTATGTGCTGAGTACAG 58.241 43.478 9.62 0.00 45.91 2.74
4748 5227 4.507710 CTGAGTACAGGTGTAATGCATGT 58.492 43.478 0.00 0.00 40.14 3.21
4830 5309 2.638480 TCTGGCAACTTACAAGCAGT 57.362 45.000 0.00 0.00 37.61 4.40
4952 5432 3.413846 AAAAACTACTCCCTCCGTTCC 57.586 47.619 0.00 0.00 0.00 3.62
4953 5433 2.019807 AAACTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
4954 5434 2.249309 AACTACTCCCTCCGTTCCAT 57.751 50.000 0.00 0.00 0.00 3.41
4955 5435 3.393426 AACTACTCCCTCCGTTCCATA 57.607 47.619 0.00 0.00 0.00 2.74
4956 5436 3.393426 ACTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
4957 5437 3.924922 ACTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
4958 5438 3.641906 ACTACTCCCTCCGTTCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
4959 5439 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
4960 5440 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
4961 5441 4.035112 ACTCCCTCCGTTCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
4962 5442 4.101119 ACTCCCTCCGTTCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
4963 5443 4.291792 TCCCTCCGTTCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
4964 5444 4.100498 TCCCTCCGTTCCATAATGTAAGAC 59.900 45.833 0.00 0.00 0.00 3.01
4965 5445 4.049186 CCTCCGTTCCATAATGTAAGACG 58.951 47.826 0.00 0.00 0.00 4.18
4966 5446 4.441079 CCTCCGTTCCATAATGTAAGACGT 60.441 45.833 0.00 0.00 0.00 4.34
4967 5447 5.075858 TCCGTTCCATAATGTAAGACGTT 57.924 39.130 0.00 0.00 0.00 3.99
4968 5448 5.481105 TCCGTTCCATAATGTAAGACGTTT 58.519 37.500 0.00 0.00 0.00 3.60
4969 5449 5.933463 TCCGTTCCATAATGTAAGACGTTTT 59.067 36.000 0.00 0.00 0.00 2.43
4970 5450 6.427547 TCCGTTCCATAATGTAAGACGTTTTT 59.572 34.615 0.00 0.00 0.00 1.94
5017 5497 5.661458 ACGTCTTACATTATGGGACAGAAG 58.339 41.667 12.60 6.42 45.00 2.85
5018 5498 5.050490 CGTCTTACATTATGGGACAGAAGG 58.950 45.833 12.60 0.00 45.00 3.46
5019 5499 5.163447 CGTCTTACATTATGGGACAGAAGGA 60.163 44.000 12.60 0.00 44.51 3.36
5020 5500 6.284459 GTCTTACATTATGGGACAGAAGGAG 58.716 44.000 0.00 0.00 44.51 3.69
5193 5673 1.202279 TGACGACGTCCGAAAACTTCA 60.202 47.619 24.33 0.00 41.76 3.02
5251 5731 0.109319 CTCCATTTGGAAAACCGGCG 60.109 55.000 0.00 0.00 44.91 6.46
5255 5820 2.763627 ATTTGGAAAACCGGCGCTGC 62.764 55.000 11.81 0.00 0.00 5.25
5258 5823 4.020378 GAAAACCGGCGCTGCGAA 62.020 61.111 28.07 0.00 0.00 4.70
5259 5824 4.322385 AAAACCGGCGCTGCGAAC 62.322 61.111 28.07 16.33 0.00 3.95
5267 5832 2.358737 CGCTGCGAACTTCCCCTT 60.359 61.111 18.66 0.00 0.00 3.95
5268 5833 2.391389 CGCTGCGAACTTCCCCTTC 61.391 63.158 18.66 0.00 0.00 3.46
5269 5834 1.302511 GCTGCGAACTTCCCCTTCA 60.303 57.895 0.00 0.00 0.00 3.02
5270 5835 1.301677 GCTGCGAACTTCCCCTTCAG 61.302 60.000 0.00 0.00 0.00 3.02
5271 5836 1.301677 CTGCGAACTTCCCCTTCAGC 61.302 60.000 0.00 0.00 0.00 4.26
5272 5837 1.302511 GCGAACTTCCCCTTCAGCA 60.303 57.895 0.00 0.00 0.00 4.41
5273 5838 0.889186 GCGAACTTCCCCTTCAGCAA 60.889 55.000 0.00 0.00 0.00 3.91
5274 5839 1.604604 CGAACTTCCCCTTCAGCAAA 58.395 50.000 0.00 0.00 0.00 3.68
5275 5840 2.162681 CGAACTTCCCCTTCAGCAAAT 58.837 47.619 0.00 0.00 0.00 2.32
5276 5841 2.095059 CGAACTTCCCCTTCAGCAAATG 60.095 50.000 0.00 0.00 0.00 2.32
5277 5842 2.978156 ACTTCCCCTTCAGCAAATGA 57.022 45.000 0.00 0.00 35.62 2.57
5278 5843 3.463048 ACTTCCCCTTCAGCAAATGAT 57.537 42.857 0.00 0.00 37.89 2.45
5279 5844 3.359950 ACTTCCCCTTCAGCAAATGATC 58.640 45.455 0.00 0.00 37.89 2.92
5280 5845 3.011032 ACTTCCCCTTCAGCAAATGATCT 59.989 43.478 0.00 0.00 37.89 2.75
5281 5846 4.228210 ACTTCCCCTTCAGCAAATGATCTA 59.772 41.667 0.00 0.00 37.89 1.98
5282 5847 5.103771 ACTTCCCCTTCAGCAAATGATCTAT 60.104 40.000 0.00 0.00 37.89 1.98
5283 5848 4.722220 TCCCCTTCAGCAAATGATCTATG 58.278 43.478 0.00 0.00 37.89 2.23
5284 5849 4.413189 TCCCCTTCAGCAAATGATCTATGA 59.587 41.667 0.00 0.00 37.89 2.15
5285 5850 4.760715 CCCCTTCAGCAAATGATCTATGAG 59.239 45.833 0.00 0.00 37.89 2.90
5286 5851 5.455755 CCCCTTCAGCAAATGATCTATGAGA 60.456 44.000 0.00 0.00 37.89 3.27
5287 5852 5.469421 CCCTTCAGCAAATGATCTATGAGAC 59.531 44.000 0.00 0.00 37.89 3.36
5288 5853 6.053650 CCTTCAGCAAATGATCTATGAGACA 58.946 40.000 0.00 0.00 37.89 3.41
5289 5854 6.541278 CCTTCAGCAAATGATCTATGAGACAA 59.459 38.462 0.00 0.00 37.89 3.18
5290 5855 7.228906 CCTTCAGCAAATGATCTATGAGACAAT 59.771 37.037 0.00 0.00 37.89 2.71
5291 5856 7.492352 TCAGCAAATGATCTATGAGACAATG 57.508 36.000 0.00 0.00 31.12 2.82
5292 5857 7.277396 TCAGCAAATGATCTATGAGACAATGA 58.723 34.615 0.00 0.00 31.12 2.57
5293 5858 7.771826 TCAGCAAATGATCTATGAGACAATGAA 59.228 33.333 0.00 0.00 31.12 2.57
5294 5859 7.856398 CAGCAAATGATCTATGAGACAATGAAC 59.144 37.037 0.00 0.00 0.00 3.18
5295 5860 7.774157 AGCAAATGATCTATGAGACAATGAACT 59.226 33.333 0.00 0.00 0.00 3.01
5296 5861 9.049523 GCAAATGATCTATGAGACAATGAACTA 57.950 33.333 0.00 0.00 0.00 2.24
5299 5864 9.979578 AATGATCTATGAGACAATGAACTAGTC 57.020 33.333 0.00 0.00 0.00 2.59
5300 5865 7.946207 TGATCTATGAGACAATGAACTAGTCC 58.054 38.462 0.00 0.00 32.82 3.85
5301 5866 7.782168 TGATCTATGAGACAATGAACTAGTCCT 59.218 37.037 0.00 0.00 32.82 3.85
5302 5867 7.962995 TCTATGAGACAATGAACTAGTCCTT 57.037 36.000 0.00 0.00 32.82 3.36
5303 5868 9.647918 ATCTATGAGACAATGAACTAGTCCTTA 57.352 33.333 0.00 0.00 32.82 2.69
5304 5869 8.904834 TCTATGAGACAATGAACTAGTCCTTAC 58.095 37.037 0.00 0.00 32.82 2.34
5305 5870 7.726033 ATGAGACAATGAACTAGTCCTTACT 57.274 36.000 0.00 0.00 39.91 2.24
5306 5871 7.159322 TGAGACAATGAACTAGTCCTTACTC 57.841 40.000 0.00 1.24 37.15 2.59
5307 5872 6.127980 TGAGACAATGAACTAGTCCTTACTCG 60.128 42.308 0.00 0.00 37.15 4.18
5308 5873 4.745649 ACAATGAACTAGTCCTTACTCGC 58.254 43.478 0.00 0.00 37.15 5.03
5309 5874 4.219944 ACAATGAACTAGTCCTTACTCGCA 59.780 41.667 0.00 0.00 37.15 5.10
5310 5875 4.640789 ATGAACTAGTCCTTACTCGCAG 57.359 45.455 0.00 0.00 37.15 5.18
5311 5876 3.682696 TGAACTAGTCCTTACTCGCAGA 58.317 45.455 0.00 0.00 37.15 4.26
5312 5877 3.439476 TGAACTAGTCCTTACTCGCAGAC 59.561 47.826 0.00 0.00 37.15 3.51
5313 5878 2.008329 ACTAGTCCTTACTCGCAGACG 58.992 52.381 0.00 0.00 37.15 4.18
5315 5880 0.803740 AGTCCTTACTCGCAGACGAC 59.196 55.000 0.00 0.00 45.12 4.34
5316 5881 0.520404 GTCCTTACTCGCAGACGACA 59.480 55.000 0.00 0.00 45.12 4.35
5317 5882 0.520404 TCCTTACTCGCAGACGACAC 59.480 55.000 0.00 0.00 45.12 3.67
5318 5883 0.456312 CCTTACTCGCAGACGACACC 60.456 60.000 0.00 0.00 45.12 4.16
5319 5884 0.522180 CTTACTCGCAGACGACACCT 59.478 55.000 0.00 0.00 45.12 4.00
5320 5885 0.240145 TTACTCGCAGACGACACCTG 59.760 55.000 0.00 0.00 45.12 4.00
5321 5886 0.887836 TACTCGCAGACGACACCTGT 60.888 55.000 0.00 0.00 45.12 4.00
5322 5887 0.887836 ACTCGCAGACGACACCTGTA 60.888 55.000 0.00 0.00 45.12 2.74
5323 5888 0.240145 CTCGCAGACGACACCTGTAA 59.760 55.000 0.00 0.00 45.12 2.41
5324 5889 0.885879 TCGCAGACGACACCTGTAAT 59.114 50.000 0.00 0.00 45.12 1.89
5325 5890 2.086094 TCGCAGACGACACCTGTAATA 58.914 47.619 0.00 0.00 45.12 0.98
5326 5891 2.488937 TCGCAGACGACACCTGTAATAA 59.511 45.455 0.00 0.00 45.12 1.40
5327 5892 3.057386 TCGCAGACGACACCTGTAATAAA 60.057 43.478 0.00 0.00 45.12 1.40
5328 5893 3.303495 CGCAGACGACACCTGTAATAAAG 59.697 47.826 0.00 0.00 43.93 1.85
5329 5894 4.491676 GCAGACGACACCTGTAATAAAGA 58.508 43.478 0.00 0.00 34.29 2.52
5330 5895 5.109903 GCAGACGACACCTGTAATAAAGAT 58.890 41.667 0.00 0.00 34.29 2.40
5331 5896 5.005779 GCAGACGACACCTGTAATAAAGATG 59.994 44.000 0.00 0.00 34.29 2.90
5332 5897 6.330278 CAGACGACACCTGTAATAAAGATGA 58.670 40.000 0.00 0.00 0.00 2.92
5333 5898 6.811665 CAGACGACACCTGTAATAAAGATGAA 59.188 38.462 0.00 0.00 0.00 2.57
5334 5899 7.330946 CAGACGACACCTGTAATAAAGATGAAA 59.669 37.037 0.00 0.00 0.00 2.69
5335 5900 7.331193 AGACGACACCTGTAATAAAGATGAAAC 59.669 37.037 0.00 0.00 0.00 2.78
5336 5901 6.932400 ACGACACCTGTAATAAAGATGAAACA 59.068 34.615 0.00 0.00 0.00 2.83
5337 5902 7.117812 ACGACACCTGTAATAAAGATGAAACAG 59.882 37.037 0.00 0.00 35.29 3.16
5338 5903 7.330946 CGACACCTGTAATAAAGATGAAACAGA 59.669 37.037 2.01 0.00 37.18 3.41
5339 5904 8.553459 ACACCTGTAATAAAGATGAAACAGAG 57.447 34.615 2.01 0.00 37.18 3.35
5346 5911 2.100605 AGATGAAACAGAGGAACGGC 57.899 50.000 0.00 0.00 0.00 5.68
5363 5928 0.462759 GGCGGATCCAGAAACCTCAG 60.463 60.000 13.41 0.00 34.01 3.35
5383 5948 2.027385 GAATTGGATGAGGGGAAGTGC 58.973 52.381 0.00 0.00 0.00 4.40
5454 6019 3.840666 TCTTTAGAGCATCACTTCCACCT 59.159 43.478 0.00 0.00 37.82 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.681978 GCGAAGGCACTGACGGGT 62.682 66.667 0.00 0.00 40.86 5.28
42 43 3.637273 GTGGAGGCCACGGGAACT 61.637 66.667 5.01 0.00 44.95 3.01
63 64 0.400213 AATCCTCACCCACGCTTTGA 59.600 50.000 0.00 0.00 0.00 2.69
67 68 2.671070 CCAATCCTCACCCACGCT 59.329 61.111 0.00 0.00 0.00 5.07
102 103 4.660303 TGAAGACCCTATGAGGCACATATT 59.340 41.667 5.09 0.00 40.18 1.28
113 114 0.179073 CCAGCGGTGAAGACCCTATG 60.179 60.000 17.83 0.00 39.39 2.23
114 115 1.972660 GCCAGCGGTGAAGACCCTAT 61.973 60.000 17.83 0.00 39.39 2.57
125 126 2.040544 CCTCAATTTCGCCAGCGGT 61.041 57.895 12.71 0.00 40.25 5.68
126 127 2.793946 CCTCAATTTCGCCAGCGG 59.206 61.111 12.71 0.00 40.25 5.52
132 133 1.994779 CCATTGTTGCCTCAATTTCGC 59.005 47.619 1.52 0.00 36.10 4.70
150 151 2.092158 TGAACCATTATTCCCATCGCCA 60.092 45.455 0.00 0.00 0.00 5.69
182 183 7.390440 CCACTACAAAGAAGGACATCAACATTA 59.610 37.037 0.00 0.00 0.00 1.90
198 204 5.396484 CAACTCATCAATGCCACTACAAAG 58.604 41.667 0.00 0.00 0.00 2.77
201 207 3.008923 TCCAACTCATCAATGCCACTACA 59.991 43.478 0.00 0.00 0.00 2.74
203 209 3.998913 TCCAACTCATCAATGCCACTA 57.001 42.857 0.00 0.00 0.00 2.74
224 230 3.627577 GTGTCCAACAGTCAACAACATCT 59.372 43.478 0.00 0.00 0.00 2.90
237 243 1.388547 GCCAAACAGAGTGTCCAACA 58.611 50.000 0.00 0.00 0.00 3.33
251 257 2.156098 GACAAACAGTATCCCGCCAAA 58.844 47.619 0.00 0.00 0.00 3.28
258 264 1.670811 CGGCATGGACAAACAGTATCC 59.329 52.381 0.00 0.00 0.00 2.59
291 297 0.877743 GTCACAAAGCCAGCTTCTCC 59.122 55.000 5.17 0.00 34.84 3.71
341 347 4.439426 GCGGTATCTAGTAGAGCATCATGG 60.439 50.000 5.98 0.00 37.82 3.66
367 373 5.008911 CACAAATCTCACAAGTTCCATGACA 59.991 40.000 0.00 0.00 0.00 3.58
371 377 4.520492 GGACACAAATCTCACAAGTTCCAT 59.480 41.667 0.00 0.00 0.00 3.41
406 412 5.007724 GTCATATGAAAATCCCAACTCGACC 59.992 44.000 7.07 0.00 0.00 4.79
408 414 5.123227 GGTCATATGAAAATCCCAACTCGA 58.877 41.667 7.07 0.00 0.00 4.04
409 415 4.275936 GGGTCATATGAAAATCCCAACTCG 59.724 45.833 19.55 0.00 35.43 4.18
417 425 4.759183 GCTGAGGAGGGTCATATGAAAATC 59.241 45.833 7.07 5.46 0.00 2.17
421 429 1.688735 CGCTGAGGAGGGTCATATGAA 59.311 52.381 7.07 0.00 0.00 2.57
441 449 2.815647 CGTTCCGGAGAAGCTGGC 60.816 66.667 3.34 0.00 43.24 4.85
442 450 1.446272 GTCGTTCCGGAGAAGCTGG 60.446 63.158 3.34 0.00 45.07 4.85
444 452 1.313812 ATCGTCGTTCCGGAGAAGCT 61.314 55.000 3.34 0.00 30.91 3.74
452 460 7.697352 ATATACTAGATAGATCGTCGTTCCG 57.303 40.000 0.00 0.00 0.00 4.30
489 497 3.378742 CGTTGATGTAGAGCAGTAGAGGT 59.621 47.826 0.00 0.00 0.00 3.85
512 520 1.963338 GAAGCAGCAGCCGACAAGT 60.963 57.895 0.00 0.00 43.56 3.16
513 521 2.684843 GGAAGCAGCAGCCGACAAG 61.685 63.158 0.00 0.00 43.56 3.16
515 523 3.939939 TGGAAGCAGCAGCCGACA 61.940 61.111 0.00 0.00 43.56 4.35
517 525 3.474486 TTGTGGAAGCAGCAGCCGA 62.474 57.895 0.00 0.00 43.56 5.54
530 538 3.378112 TGTTGAAAGTCAGAAGCTTGTGG 59.622 43.478 22.17 5.37 0.00 4.17
558 566 6.145338 TCTATGTCTCCACCTTATCGAAAC 57.855 41.667 0.00 0.00 0.00 2.78
570 578 3.378512 AGTTGATGCCTCTATGTCTCCA 58.621 45.455 0.00 0.00 0.00 3.86
575 583 5.363939 GAAAGCTAGTTGATGCCTCTATGT 58.636 41.667 0.00 0.00 0.00 2.29
580 588 3.274095 AGGAAAGCTAGTTGATGCCTC 57.726 47.619 0.00 0.00 0.00 4.70
585 593 4.811557 GCGTCATTAGGAAAGCTAGTTGAT 59.188 41.667 0.00 0.00 0.00 2.57
586 594 4.181578 GCGTCATTAGGAAAGCTAGTTGA 58.818 43.478 0.00 0.00 0.00 3.18
591 599 3.876914 CCATTGCGTCATTAGGAAAGCTA 59.123 43.478 0.00 0.00 33.91 3.32
600 608 0.391793 TGACGGCCATTGCGTCATTA 60.392 50.000 13.28 0.00 42.11 1.90
601 609 1.647545 CTGACGGCCATTGCGTCATT 61.648 55.000 16.34 0.00 44.15 2.57
603 611 2.741985 CTGACGGCCATTGCGTCA 60.742 61.111 15.51 15.51 43.54 4.35
609 617 2.632377 CTACATTCACTGACGGCCATT 58.368 47.619 2.24 0.00 0.00 3.16
610 618 1.134401 CCTACATTCACTGACGGCCAT 60.134 52.381 2.24 0.00 0.00 4.40
611 619 0.249120 CCTACATTCACTGACGGCCA 59.751 55.000 2.24 0.00 0.00 5.36
613 621 1.471676 CCTCCTACATTCACTGACGGC 60.472 57.143 0.00 0.00 0.00 5.68
617 625 4.406972 CCATCTTCCTCCTACATTCACTGA 59.593 45.833 0.00 0.00 0.00 3.41
618 626 4.163078 ACCATCTTCCTCCTACATTCACTG 59.837 45.833 0.00 0.00 0.00 3.66
621 629 3.455910 CCACCATCTTCCTCCTACATTCA 59.544 47.826 0.00 0.00 0.00 2.57
625 633 1.204146 GCCACCATCTTCCTCCTACA 58.796 55.000 0.00 0.00 0.00 2.74
626 634 0.105039 CGCCACCATCTTCCTCCTAC 59.895 60.000 0.00 0.00 0.00 3.18
630 638 2.044123 AAATCGCCACCATCTTCCTC 57.956 50.000 0.00 0.00 0.00 3.71
638 646 0.109532 TCTGGACAAAATCGCCACCA 59.890 50.000 0.00 0.00 0.00 4.17
639 647 1.243902 TTCTGGACAAAATCGCCACC 58.756 50.000 0.00 0.00 0.00 4.61
641 649 2.582052 AGTTTCTGGACAAAATCGCCA 58.418 42.857 0.00 0.00 0.00 5.69
643 651 3.964909 ACAAGTTTCTGGACAAAATCGC 58.035 40.909 0.00 0.00 0.00 4.58
644 652 5.207768 CAGACAAGTTTCTGGACAAAATCG 58.792 41.667 7.00 0.00 39.59 3.34
650 658 7.054124 AGAAATTACAGACAAGTTTCTGGACA 58.946 34.615 15.13 4.17 46.38 4.02
651 659 7.497925 AGAAATTACAGACAAGTTTCTGGAC 57.502 36.000 15.13 1.37 46.38 4.02
665 673 9.574516 AGCCCCTACAATAATAAGAAATTACAG 57.425 33.333 0.00 0.00 0.00 2.74
673 681 3.980698 AGCCAGCCCCTACAATAATAAGA 59.019 43.478 0.00 0.00 0.00 2.10
677 685 3.299503 CAAAGCCAGCCCCTACAATAAT 58.700 45.455 0.00 0.00 0.00 1.28
680 688 0.409484 ACAAAGCCAGCCCCTACAAT 59.591 50.000 0.00 0.00 0.00 2.71
684 692 2.982339 TAAAACAAAGCCAGCCCCTA 57.018 45.000 0.00 0.00 0.00 3.53
686 694 5.538433 TCATATATAAAACAAAGCCAGCCCC 59.462 40.000 0.00 0.00 0.00 5.80
694 702 8.154649 AGCGGAAGGTCATATATAAAACAAAG 57.845 34.615 0.00 0.00 37.07 2.77
695 703 8.514330 AAGCGGAAGGTCATATATAAAACAAA 57.486 30.769 0.00 0.00 43.76 2.83
708 716 9.796120 CAAAAATATATTAAAAGCGGAAGGTCA 57.204 29.630 0.00 0.00 43.76 4.02
709 717 8.752254 GCAAAAATATATTAAAAGCGGAAGGTC 58.248 33.333 0.00 0.00 43.76 3.85
711 719 8.641499 TGCAAAAATATATTAAAAGCGGAAGG 57.359 30.769 0.00 0.00 0.00 3.46
742 750 8.110002 GGCATTTTTCACAAACATATTCGATTC 58.890 33.333 0.00 0.00 0.00 2.52
748 756 8.987890 GTAGTTGGCATTTTTCACAAACATATT 58.012 29.630 0.00 0.00 0.00 1.28
749 757 8.147058 TGTAGTTGGCATTTTTCACAAACATAT 58.853 29.630 0.00 0.00 0.00 1.78
780 788 3.321682 CAGTTGGCCTGGATTCTGAAAAA 59.678 43.478 3.32 0.00 37.54 1.94
781 789 2.892852 CAGTTGGCCTGGATTCTGAAAA 59.107 45.455 3.32 0.00 37.54 2.29
782 790 2.108075 TCAGTTGGCCTGGATTCTGAAA 59.892 45.455 3.32 0.00 41.83 2.69
783 791 1.704628 TCAGTTGGCCTGGATTCTGAA 59.295 47.619 3.32 0.00 41.83 3.02
784 792 1.361204 TCAGTTGGCCTGGATTCTGA 58.639 50.000 3.32 6.19 41.83 3.27
785 793 2.205022 TTCAGTTGGCCTGGATTCTG 57.795 50.000 3.32 3.86 41.83 3.02
786 794 3.463048 AATTCAGTTGGCCTGGATTCT 57.537 42.857 3.32 0.00 44.71 2.40
787 795 5.452356 CCATTAATTCAGTTGGCCTGGATTC 60.452 44.000 3.32 0.00 44.71 2.52
789 797 3.962718 CCATTAATTCAGTTGGCCTGGAT 59.037 43.478 3.32 0.00 41.50 3.41
790 798 3.364549 CCATTAATTCAGTTGGCCTGGA 58.635 45.455 3.32 0.00 41.83 3.86
791 799 3.806625 CCATTAATTCAGTTGGCCTGG 57.193 47.619 3.32 0.00 41.83 4.45
803 811 7.197901 TGGATTTCATTTCCTGCCATTAATT 57.802 32.000 0.00 0.00 34.17 1.40
810 818 2.738743 TCCTGGATTTCATTTCCTGCC 58.261 47.619 0.00 0.00 34.17 4.85
819 827 6.367983 CCCAGATAGAAATTCCTGGATTTCA 58.632 40.000 22.25 14.13 46.84 2.69
827 835 2.175715 GTGGGCCCAGATAGAAATTCCT 59.824 50.000 29.55 0.00 0.00 3.36
860 872 1.821753 ACATCGAGAGTTGGAGACCTG 59.178 52.381 0.00 0.00 35.16 4.00
868 880 4.528504 CTCCACGTATACATCGAGAGTTG 58.471 47.826 3.32 0.00 36.87 3.16
880 892 1.961394 GCCAGTGATCCTCCACGTATA 59.039 52.381 0.00 0.00 41.67 1.47
881 893 0.753262 GCCAGTGATCCTCCACGTAT 59.247 55.000 0.00 0.00 41.67 3.06
882 894 1.663379 CGCCAGTGATCCTCCACGTA 61.663 60.000 0.00 0.00 41.67 3.57
959 973 2.508887 CGGTGCTCTGCTCTGCTC 60.509 66.667 0.00 0.00 0.00 4.26
960 974 4.756458 GCGGTGCTCTGCTCTGCT 62.756 66.667 12.30 0.00 46.64 4.24
1051 1086 4.821589 CGGAGAAGGGAGCGTGGC 62.822 72.222 0.00 0.00 0.00 5.01
1054 1089 3.069318 GGACGGAGAAGGGAGCGT 61.069 66.667 0.00 0.00 0.00 5.07
1056 1091 4.516195 GCGGACGGAGAAGGGAGC 62.516 72.222 0.00 0.00 0.00 4.70
1057 1092 3.839432 GGCGGACGGAGAAGGGAG 61.839 72.222 0.00 0.00 0.00 4.30
1306 1350 2.606108 TGGAACGAGACGAATGTGATG 58.394 47.619 0.00 0.00 0.00 3.07
1310 1354 3.594603 AGATTGGAACGAGACGAATGT 57.405 42.857 0.00 0.00 0.00 2.71
1383 1449 1.405821 AGAGGCCTTGTCGTCGATTAG 59.594 52.381 6.77 0.00 0.00 1.73
1464 1537 0.319405 GCAGGAAATTTGTGCAGGCT 59.681 50.000 14.51 0.00 37.16 4.58
1465 1538 0.319405 AGCAGGAAATTTGTGCAGGC 59.681 50.000 19.38 5.63 39.80 4.85
1466 1539 1.342174 ACAGCAGGAAATTTGTGCAGG 59.658 47.619 19.38 14.44 39.80 4.85
1467 1540 2.400399 CACAGCAGGAAATTTGTGCAG 58.600 47.619 19.38 15.23 39.80 4.41
1468 1541 1.068895 CCACAGCAGGAAATTTGTGCA 59.931 47.619 19.38 0.00 39.57 4.57
1469 1542 1.340889 TCCACAGCAGGAAATTTGTGC 59.659 47.619 12.34 12.34 39.57 4.57
1470 1543 3.731652 TTCCACAGCAGGAAATTTGTG 57.268 42.857 0.00 0.00 44.38 3.33
1638 1763 6.849811 GCATCAATCACTAGTCAATTCGAATG 59.150 38.462 12.25 6.35 0.00 2.67
1641 1766 5.291858 GTGCATCAATCACTAGTCAATTCGA 59.708 40.000 0.00 0.00 0.00 3.71
1707 1997 1.919918 CGAGGAGACAGAGAACATGC 58.080 55.000 0.00 0.00 0.00 4.06
1718 2008 4.813296 TTTCTTCTTTTTGCGAGGAGAC 57.187 40.909 0.00 0.00 28.47 3.36
1723 2013 6.573617 AACATGTTTTCTTCTTTTTGCGAG 57.426 33.333 4.92 0.00 0.00 5.03
1725 2015 6.533185 ACAAACATGTTTTCTTCTTTTTGCG 58.467 32.000 21.10 7.83 0.00 4.85
1726 2016 8.726650 AAACAAACATGTTTTCTTCTTTTTGC 57.273 26.923 21.10 0.00 38.70 3.68
1728 2018 9.676195 CCAAAACAAACATGTTTTCTTCTTTTT 57.324 25.926 21.10 14.77 46.44 1.94
1733 2023 9.838975 ATTTTCCAAAACAAACATGTTTTCTTC 57.161 25.926 21.10 0.00 46.44 2.87
1735 2025 9.230122 AGATTTTCCAAAACAAACATGTTTTCT 57.770 25.926 21.10 13.26 46.44 2.52
1738 2028 8.558973 TCAGATTTTCCAAAACAAACATGTTT 57.441 26.923 18.13 18.13 43.04 2.83
1739 2029 7.280652 CCTCAGATTTTCCAAAACAAACATGTT 59.719 33.333 4.92 4.92 0.00 2.71
1740 2030 6.762661 CCTCAGATTTTCCAAAACAAACATGT 59.237 34.615 0.00 0.00 0.00 3.21
1741 2031 6.985645 TCCTCAGATTTTCCAAAACAAACATG 59.014 34.615 0.00 0.00 0.00 3.21
1742 2032 7.123355 TCCTCAGATTTTCCAAAACAAACAT 57.877 32.000 0.00 0.00 0.00 2.71
1743 2033 6.537453 TCCTCAGATTTTCCAAAACAAACA 57.463 33.333 0.00 0.00 0.00 2.83
1744 2034 9.541143 TTTATCCTCAGATTTTCCAAAACAAAC 57.459 29.630 0.00 0.00 33.67 2.93
1782 2206 5.611197 CGAAGCGTTGATGCACATTATAGAG 60.611 44.000 0.00 0.00 37.31 2.43
1830 2254 6.627395 TGTGATGGAAATAAACAAACTCGT 57.373 33.333 0.00 0.00 0.00 4.18
1846 2270 7.984002 TTTATTAATGCGTCAAATGTGATGG 57.016 32.000 7.22 0.00 40.59 3.51
1920 2351 4.001618 ACTTCAGAAGCAAGAGGAAGAC 57.998 45.455 10.33 0.00 38.59 3.01
1965 2396 3.032459 GTCCGAAGACCCCTAGAGAAAT 58.968 50.000 0.00 0.00 37.00 2.17
2281 2714 1.068588 GCCAAGAGAAAACCAACCCAC 59.931 52.381 0.00 0.00 0.00 4.61
2351 2784 2.562876 GGTATCGAGAGGCCCGGTC 61.563 68.421 0.00 0.00 0.00 4.79
2361 2794 8.076781 TCTTATCGATTTGAAGAAGGTATCGAG 58.923 37.037 1.71 0.00 46.74 4.04
2427 2860 1.067516 GACAGAGCTGCCTGAGATCTC 59.932 57.143 16.21 16.21 44.50 2.75
2499 2935 4.440880 AGACTGAGCAGATTCATTAGCAC 58.559 43.478 4.21 0.00 0.00 4.40
2516 2952 9.713740 GCAATTTTCAGTATTTCATCTAGACTG 57.286 33.333 0.00 0.00 39.09 3.51
2558 2998 8.959548 TGTATAGAACAAAACATCAATGCAGAT 58.040 29.630 0.00 0.00 34.29 2.90
2777 3217 1.128692 GCCTACGCTTGATTCACACAC 59.871 52.381 0.00 0.00 0.00 3.82
2778 3218 1.270571 TGCCTACGCTTGATTCACACA 60.271 47.619 0.00 0.00 35.36 3.72
2856 3296 0.921896 ATGGCTGGCTGTTATGGACT 59.078 50.000 2.00 0.00 0.00 3.85
2857 3297 1.312815 GATGGCTGGCTGTTATGGAC 58.687 55.000 2.00 0.00 0.00 4.02
2858 3298 0.918258 TGATGGCTGGCTGTTATGGA 59.082 50.000 2.00 0.00 0.00 3.41
2860 3300 2.048444 ACTGATGGCTGGCTGTTATG 57.952 50.000 2.00 0.00 0.00 1.90
2861 3301 3.931907 TTACTGATGGCTGGCTGTTAT 57.068 42.857 2.00 0.00 0.00 1.89
2959 3399 6.048732 TCCATTGATCTGTAAGCACACTAA 57.951 37.500 0.00 0.00 0.00 2.24
3127 3567 7.921786 AAATTACGGATTCATGTTCTCTTGA 57.078 32.000 0.00 0.00 0.00 3.02
3214 3654 2.159254 TGCAAACAAACACCAGAGCTTC 60.159 45.455 0.00 0.00 0.00 3.86
3218 3658 3.441496 ACATGCAAACAAACACCAGAG 57.559 42.857 0.00 0.00 0.00 3.35
3249 3689 4.019411 TCAAGAAGGAATGCACATAGGACA 60.019 41.667 0.00 0.00 0.00 4.02
3297 3737 2.485814 CAGGTTAAAGAGAACAGCAGGC 59.514 50.000 0.00 0.00 0.00 4.85
3390 3833 9.401445 GTTAAAGTTCGTATGTTATCGCTTAAC 57.599 33.333 2.26 2.26 40.59 2.01
3453 3896 5.709966 AGAAACCGGTAATGCAAATCTTTC 58.290 37.500 8.00 2.98 0.00 2.62
3501 3944 2.789436 CGAGTAGTCACGCTGTCTGATG 60.789 54.545 0.00 0.00 0.00 3.07
3533 3976 6.070881 TGGTTAGGCATGCAAAAGACAAATAT 60.071 34.615 21.36 0.00 0.00 1.28
3548 3991 5.481473 AGAAACACAAATGATGGTTAGGCAT 59.519 36.000 0.00 0.00 0.00 4.40
3589 4032 7.850982 CGCAATTGTCTATATTGTAAAGTGGAC 59.149 37.037 7.40 0.00 35.82 4.02
3681 4124 8.769472 GCTAGTGGCCAAGACTACAAGTCTAC 62.769 50.000 7.24 4.74 44.04 2.59
3682 4125 6.842205 GCTAGTGGCCAAGACTACAAGTCTA 61.842 48.000 7.24 0.00 44.04 2.59
3683 4126 6.128057 GCTAGTGGCCAAGACTACAAGTCT 62.128 50.000 7.24 3.73 45.49 3.24
3684 4127 2.841442 AGTGGCCAAGACTACAAGTC 57.159 50.000 7.24 0.00 45.38 3.01
3685 4128 2.028020 GCTAGTGGCCAAGACTACAAGT 60.028 50.000 7.24 0.00 34.27 3.16
3686 4129 2.028112 TGCTAGTGGCCAAGACTACAAG 60.028 50.000 7.24 0.00 40.92 3.16
3704 4147 7.883311 ACATGGAAATAACAACTTAGTACTGCT 59.117 33.333 5.39 0.00 0.00 4.24
3821 4264 1.970640 AGCTGATGGTGATGCGGTATA 59.029 47.619 0.00 0.00 0.00 1.47
3846 4289 7.201652 GCCCTGAACAGACAGAAATTAATAGAC 60.202 40.741 3.19 0.00 39.94 2.59
3928 4371 1.501741 CAAAGTGAACCGGGATGCG 59.498 57.895 6.32 0.00 0.00 4.73
3934 4377 2.203422 TGCCCCAAAGTGAACCGG 60.203 61.111 0.00 0.00 0.00 5.28
4190 4633 7.155328 CACTGCTCTCGATATAGGGTTTTATT 58.845 38.462 0.00 0.00 0.00 1.40
4191 4634 6.295349 CCACTGCTCTCGATATAGGGTTTTAT 60.295 42.308 0.00 0.00 0.00 1.40
4243 4712 2.158957 TCCCGGACTTCACAGAATATGC 60.159 50.000 0.73 0.00 0.00 3.14
4354 4825 5.674525 AGTGATGCTCCGAATAAATTCAGA 58.325 37.500 3.76 0.00 36.61 3.27
4363 4834 3.941483 CTGGTAAAAGTGATGCTCCGAAT 59.059 43.478 0.00 0.00 0.00 3.34
4597 5076 4.976116 GTGTGCGCTTCTTTCTGTAAATTT 59.024 37.500 9.73 0.00 0.00 1.82
4600 5079 2.939756 TGTGTGCGCTTCTTTCTGTAAA 59.060 40.909 9.73 0.00 0.00 2.01
4705 5184 4.330620 CAGCACATAATCACCAAAAATGCC 59.669 41.667 0.00 0.00 0.00 4.40
4735 5214 7.969536 ATATTAGAGTCACATGCATTACACC 57.030 36.000 0.00 0.00 0.00 4.16
4891 5371 6.891908 ACAAATGTAATCTAGTGGCCAAGATT 59.108 34.615 27.69 27.69 43.23 2.40
4892 5372 6.426587 ACAAATGTAATCTAGTGGCCAAGAT 58.573 36.000 7.24 11.11 33.87 2.40
4937 5417 3.641906 ACATTATGGAACGGAGGGAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
4938 5418 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
4939 5419 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
4940 5420 4.344102 TCTTACATTATGGAACGGAGGGAG 59.656 45.833 0.00 0.00 0.00 4.30
4941 5421 4.100498 GTCTTACATTATGGAACGGAGGGA 59.900 45.833 0.00 0.00 0.00 4.20
4942 5422 4.377897 GTCTTACATTATGGAACGGAGGG 58.622 47.826 0.00 0.00 0.00 4.30
4943 5423 4.049186 CGTCTTACATTATGGAACGGAGG 58.951 47.826 0.00 0.00 0.00 4.30
4944 5424 4.679662 ACGTCTTACATTATGGAACGGAG 58.320 43.478 6.60 0.00 0.00 4.63
4945 5425 4.724074 ACGTCTTACATTATGGAACGGA 57.276 40.909 6.60 0.00 0.00 4.69
4946 5426 5.789710 AAACGTCTTACATTATGGAACGG 57.210 39.130 6.60 0.00 0.00 4.44
4990 5470 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
4991 5471 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
4992 5472 6.045072 TCTGTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
4993 5473 5.670792 TCTGTCCCATAATGTAAGACGTT 57.329 39.130 0.00 0.00 0.00 3.99
4994 5474 5.395324 CCTTCTGTCCCATAATGTAAGACGT 60.395 44.000 0.00 0.00 0.00 4.34
4995 5475 5.050490 CCTTCTGTCCCATAATGTAAGACG 58.950 45.833 0.00 0.00 0.00 4.18
4996 5476 6.127026 ACTCCTTCTGTCCCATAATGTAAGAC 60.127 42.308 0.00 0.00 0.00 3.01
4997 5477 5.964477 ACTCCTTCTGTCCCATAATGTAAGA 59.036 40.000 0.00 0.00 0.00 2.10
4998 5478 6.240549 ACTCCTTCTGTCCCATAATGTAAG 57.759 41.667 0.00 0.00 0.00 2.34
4999 5479 7.931015 ATACTCCTTCTGTCCCATAATGTAA 57.069 36.000 0.00 0.00 0.00 2.41
5000 5480 8.867097 GTTATACTCCTTCTGTCCCATAATGTA 58.133 37.037 0.00 0.00 0.00 2.29
5001 5481 7.569111 AGTTATACTCCTTCTGTCCCATAATGT 59.431 37.037 0.00 0.00 0.00 2.71
5002 5482 7.967908 AGTTATACTCCTTCTGTCCCATAATG 58.032 38.462 0.00 0.00 0.00 1.90
5003 5483 8.568617 AAGTTATACTCCTTCTGTCCCATAAT 57.431 34.615 0.00 0.00 0.00 1.28
5004 5484 7.989947 AAGTTATACTCCTTCTGTCCCATAA 57.010 36.000 0.00 0.00 0.00 1.90
5005 5485 8.063153 TGTAAGTTATACTCCTTCTGTCCCATA 58.937 37.037 0.00 0.00 0.00 2.74
5006 5486 6.901300 TGTAAGTTATACTCCTTCTGTCCCAT 59.099 38.462 0.00 0.00 0.00 4.00
5007 5487 6.258354 TGTAAGTTATACTCCTTCTGTCCCA 58.742 40.000 0.00 0.00 0.00 4.37
5008 5488 6.786967 TGTAAGTTATACTCCTTCTGTCCC 57.213 41.667 0.00 0.00 0.00 4.46
5016 5496 9.953565 TGCTTGTTAAATGTAAGTTATACTCCT 57.046 29.630 0.00 0.00 0.00 3.69
5193 5673 6.263168 CCAGACCAGACAATTTCAGTTTTACT 59.737 38.462 0.00 0.00 0.00 2.24
5216 5696 3.153369 TGGAGCATAACAAAGCTTCCA 57.847 42.857 0.00 0.00 42.04 3.53
5251 5731 1.301677 CTGAAGGGGAAGTTCGCAGC 61.302 60.000 20.23 9.84 0.00 5.25
5255 5820 1.604604 TTTGCTGAAGGGGAAGTTCG 58.395 50.000 0.00 0.00 0.00 3.95
5256 5821 3.157087 TCATTTGCTGAAGGGGAAGTTC 58.843 45.455 0.00 0.00 0.00 3.01
5257 5822 3.243359 TCATTTGCTGAAGGGGAAGTT 57.757 42.857 0.00 0.00 0.00 2.66
5258 5823 2.978156 TCATTTGCTGAAGGGGAAGT 57.022 45.000 0.00 0.00 0.00 3.01
5259 5824 3.629087 AGATCATTTGCTGAAGGGGAAG 58.371 45.455 0.00 0.00 37.44 3.46
5260 5825 3.744940 AGATCATTTGCTGAAGGGGAA 57.255 42.857 0.00 0.00 37.44 3.97
5261 5826 4.413189 TCATAGATCATTTGCTGAAGGGGA 59.587 41.667 0.00 0.00 37.44 4.81
5262 5827 4.722220 TCATAGATCATTTGCTGAAGGGG 58.278 43.478 0.00 0.00 37.44 4.79
5263 5828 5.469421 GTCTCATAGATCATTTGCTGAAGGG 59.531 44.000 0.00 0.00 37.44 3.95
5264 5829 6.053650 TGTCTCATAGATCATTTGCTGAAGG 58.946 40.000 0.00 0.00 37.44 3.46
5265 5830 7.549615 TTGTCTCATAGATCATTTGCTGAAG 57.450 36.000 0.00 0.00 37.44 3.02
5266 5831 7.771826 TCATTGTCTCATAGATCATTTGCTGAA 59.228 33.333 0.00 0.00 37.44 3.02
5267 5832 7.277396 TCATTGTCTCATAGATCATTTGCTGA 58.723 34.615 0.00 0.00 38.53 4.26
5268 5833 7.492352 TCATTGTCTCATAGATCATTTGCTG 57.508 36.000 0.00 0.00 0.00 4.41
5269 5834 7.774157 AGTTCATTGTCTCATAGATCATTTGCT 59.226 33.333 0.00 0.00 0.00 3.91
5270 5835 7.928103 AGTTCATTGTCTCATAGATCATTTGC 58.072 34.615 0.00 0.00 0.00 3.68
5273 5838 9.979578 GACTAGTTCATTGTCTCATAGATCATT 57.020 33.333 0.00 0.00 31.76 2.57
5274 5839 8.584157 GGACTAGTTCATTGTCTCATAGATCAT 58.416 37.037 0.00 0.00 34.51 2.45
5275 5840 7.782168 AGGACTAGTTCATTGTCTCATAGATCA 59.218 37.037 3.42 0.00 34.51 2.92
5276 5841 8.177119 AGGACTAGTTCATTGTCTCATAGATC 57.823 38.462 3.42 0.00 34.51 2.75
5277 5842 8.546083 AAGGACTAGTTCATTGTCTCATAGAT 57.454 34.615 3.42 0.00 34.51 1.98
5278 5843 7.962995 AAGGACTAGTTCATTGTCTCATAGA 57.037 36.000 3.42 0.00 34.51 1.98
5279 5844 8.908903 AGTAAGGACTAGTTCATTGTCTCATAG 58.091 37.037 3.42 0.00 34.51 2.23
5280 5845 8.824756 AGTAAGGACTAGTTCATTGTCTCATA 57.175 34.615 3.42 0.00 34.51 2.15
5281 5846 7.415765 CGAGTAAGGACTAGTTCATTGTCTCAT 60.416 40.741 3.42 0.00 35.45 2.90
5282 5847 6.127980 CGAGTAAGGACTAGTTCATTGTCTCA 60.128 42.308 3.42 0.00 35.45 3.27
5283 5848 6.259638 CGAGTAAGGACTAGTTCATTGTCTC 58.740 44.000 3.42 9.18 35.45 3.36
5284 5849 5.393243 GCGAGTAAGGACTAGTTCATTGTCT 60.393 44.000 3.42 2.54 35.45 3.41
5285 5850 4.799428 GCGAGTAAGGACTAGTTCATTGTC 59.201 45.833 3.42 0.00 35.45 3.18
5286 5851 4.219944 TGCGAGTAAGGACTAGTTCATTGT 59.780 41.667 3.42 0.00 35.45 2.71
5287 5852 4.744570 TGCGAGTAAGGACTAGTTCATTG 58.255 43.478 3.42 0.00 35.45 2.82
5288 5853 4.705507 TCTGCGAGTAAGGACTAGTTCATT 59.294 41.667 3.42 1.08 35.45 2.57
5289 5854 4.096682 GTCTGCGAGTAAGGACTAGTTCAT 59.903 45.833 3.42 0.00 35.45 2.57
5290 5855 3.439476 GTCTGCGAGTAAGGACTAGTTCA 59.561 47.826 3.42 0.00 35.45 3.18
5291 5856 3.485546 CGTCTGCGAGTAAGGACTAGTTC 60.486 52.174 0.00 0.00 41.33 3.01
5292 5857 2.419324 CGTCTGCGAGTAAGGACTAGTT 59.581 50.000 0.00 0.00 41.33 2.24
5293 5858 2.008329 CGTCTGCGAGTAAGGACTAGT 58.992 52.381 0.00 0.00 41.33 2.57
5294 5859 2.277969 TCGTCTGCGAGTAAGGACTAG 58.722 52.381 0.00 0.00 42.81 2.57
5295 5860 2.391616 TCGTCTGCGAGTAAGGACTA 57.608 50.000 0.00 0.00 42.81 2.59
5296 5861 3.244764 TCGTCTGCGAGTAAGGACT 57.755 52.632 0.00 0.00 42.81 3.85
5305 5870 0.885879 ATTACAGGTGTCGTCTGCGA 59.114 50.000 0.00 0.00 45.79 5.10
5306 5871 2.554806 TATTACAGGTGTCGTCTGCG 57.445 50.000 0.00 0.00 35.78 5.18
5307 5872 4.491676 TCTTTATTACAGGTGTCGTCTGC 58.508 43.478 0.00 0.00 35.78 4.26
5308 5873 6.330278 TCATCTTTATTACAGGTGTCGTCTG 58.670 40.000 0.00 0.00 38.16 3.51
5309 5874 6.525578 TCATCTTTATTACAGGTGTCGTCT 57.474 37.500 0.00 0.00 0.00 4.18
5310 5875 7.117236 TGTTTCATCTTTATTACAGGTGTCGTC 59.883 37.037 0.00 0.00 0.00 4.20
5311 5876 6.932400 TGTTTCATCTTTATTACAGGTGTCGT 59.068 34.615 0.00 0.00 0.00 4.34
5312 5877 7.330946 TCTGTTTCATCTTTATTACAGGTGTCG 59.669 37.037 0.00 0.00 35.06 4.35
5313 5878 8.547967 TCTGTTTCATCTTTATTACAGGTGTC 57.452 34.615 0.00 0.00 35.06 3.67
5314 5879 7.607991 CCTCTGTTTCATCTTTATTACAGGTGT 59.392 37.037 0.00 0.00 35.06 4.16
5315 5880 7.824289 TCCTCTGTTTCATCTTTATTACAGGTG 59.176 37.037 0.00 0.00 35.06 4.00
5316 5881 7.918076 TCCTCTGTTTCATCTTTATTACAGGT 58.082 34.615 0.00 0.00 35.06 4.00
5317 5882 8.669243 GTTCCTCTGTTTCATCTTTATTACAGG 58.331 37.037 0.00 0.00 35.06 4.00
5318 5883 8.383619 CGTTCCTCTGTTTCATCTTTATTACAG 58.616 37.037 0.00 0.00 35.51 2.74
5319 5884 7.333423 CCGTTCCTCTGTTTCATCTTTATTACA 59.667 37.037 0.00 0.00 0.00 2.41
5320 5885 7.676572 GCCGTTCCTCTGTTTCATCTTTATTAC 60.677 40.741 0.00 0.00 0.00 1.89
5321 5886 6.315393 GCCGTTCCTCTGTTTCATCTTTATTA 59.685 38.462 0.00 0.00 0.00 0.98
5322 5887 5.123979 GCCGTTCCTCTGTTTCATCTTTATT 59.876 40.000 0.00 0.00 0.00 1.40
5323 5888 4.636206 GCCGTTCCTCTGTTTCATCTTTAT 59.364 41.667 0.00 0.00 0.00 1.40
5324 5889 4.000988 GCCGTTCCTCTGTTTCATCTTTA 58.999 43.478 0.00 0.00 0.00 1.85
5325 5890 2.814336 GCCGTTCCTCTGTTTCATCTTT 59.186 45.455 0.00 0.00 0.00 2.52
5326 5891 2.427506 GCCGTTCCTCTGTTTCATCTT 58.572 47.619 0.00 0.00 0.00 2.40
5327 5892 1.673033 CGCCGTTCCTCTGTTTCATCT 60.673 52.381 0.00 0.00 0.00 2.90
5328 5893 0.721718 CGCCGTTCCTCTGTTTCATC 59.278 55.000 0.00 0.00 0.00 2.92
5329 5894 0.673644 CCGCCGTTCCTCTGTTTCAT 60.674 55.000 0.00 0.00 0.00 2.57
5330 5895 1.301401 CCGCCGTTCCTCTGTTTCA 60.301 57.895 0.00 0.00 0.00 2.69
5331 5896 0.391263 ATCCGCCGTTCCTCTGTTTC 60.391 55.000 0.00 0.00 0.00 2.78
5332 5897 0.391263 GATCCGCCGTTCCTCTGTTT 60.391 55.000 0.00 0.00 0.00 2.83
5333 5898 1.218316 GATCCGCCGTTCCTCTGTT 59.782 57.895 0.00 0.00 0.00 3.16
5334 5899 2.722201 GGATCCGCCGTTCCTCTGT 61.722 63.158 0.00 0.00 0.00 3.41
5335 5900 2.107141 GGATCCGCCGTTCCTCTG 59.893 66.667 0.00 0.00 0.00 3.35
5336 5901 2.363795 TGGATCCGCCGTTCCTCT 60.364 61.111 7.39 0.00 40.66 3.69
5337 5902 1.956629 TTCTGGATCCGCCGTTCCTC 61.957 60.000 7.39 0.00 40.66 3.71
5338 5903 1.550130 TTTCTGGATCCGCCGTTCCT 61.550 55.000 7.39 0.00 40.66 3.36
5339 5904 1.078708 TTTCTGGATCCGCCGTTCC 60.079 57.895 7.39 0.00 40.66 3.62
5346 5911 3.550437 ATTCTGAGGTTTCTGGATCCG 57.450 47.619 7.39 2.06 0.00 4.18
5363 5928 2.027385 GCACTTCCCCTCATCCAATTC 58.973 52.381 0.00 0.00 0.00 2.17
5383 5948 7.697352 TTGAAAATGCAATTACTCAACACAG 57.303 32.000 0.00 0.00 34.95 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.