Multiple sequence alignment - TraesCS6A01G046800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G046800 chr6A 100.000 3664 0 0 365 4028 23863909 23867572 0.000000e+00 6767.0
1 TraesCS6A01G046800 chr6A 86.624 471 38 18 2079 2528 23851170 23851636 7.770000e-137 497.0
2 TraesCS6A01G046800 chr6A 79.070 559 83 18 2675 3217 23851714 23852254 1.780000e-93 353.0
3 TraesCS6A01G046800 chr6A 92.683 164 5 5 1612 1770 23850541 23850702 3.130000e-56 230.0
4 TraesCS6A01G046800 chr6A 91.667 144 8 2 1815 1958 23850847 23850986 3.180000e-46 196.0
5 TraesCS6A01G046800 chr6A 100.000 62 0 0 1 62 23863545 23863606 9.150000e-22 115.0
6 TraesCS6A01G046800 chr6D 90.466 2895 159 52 480 3312 25747032 25749871 0.000000e+00 3709.0
7 TraesCS6A01G046800 chr6D 89.388 490 35 7 3542 4028 25750146 25750621 5.760000e-168 601.0
8 TraesCS6A01G046800 chr6D 87.261 471 35 14 2079 2528 25729202 25729668 7.720000e-142 514.0
9 TraesCS6A01G046800 chr6D 92.746 193 11 2 3298 3489 25749947 25750137 3.970000e-70 276.0
10 TraesCS6A01G046800 chr6D 89.447 199 11 7 1581 1770 25728682 25728879 4.020000e-60 243.0
11 TraesCS6A01G046800 chr6D 92.361 144 7 1 1815 1958 25729024 25729163 6.830000e-48 202.0
12 TraesCS6A01G046800 chr6B 89.734 2182 136 47 420 2569 41931628 41933753 0.000000e+00 2708.0
13 TraesCS6A01G046800 chr6B 89.556 766 45 14 2570 3312 41933877 41934630 0.000000e+00 939.0
14 TraesCS6A01G046800 chr6B 87.500 472 43 11 2074 2537 41919893 41920356 7.670000e-147 531.0
15 TraesCS6A01G046800 chr6B 91.362 301 17 4 3729 4028 41937658 41937950 1.740000e-108 403.0
16 TraesCS6A01G046800 chr6B 87.946 224 14 9 1559 1770 41919348 41919570 6.680000e-63 252.0
17 TraesCS6A01G046800 chr6B 92.361 144 7 1 1815 1958 41919722 41919861 6.830000e-48 202.0
18 TraesCS6A01G046800 chr7A 91.803 61 5 0 1997 2057 106775946 106776006 7.170000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G046800 chr6A 23863545 23867572 4027 False 3441.000000 6767 100.000000 1 4028 2 chr6A.!!$F2 4027
1 TraesCS6A01G046800 chr6A 23850541 23852254 1713 False 319.000000 497 87.511000 1612 3217 4 chr6A.!!$F1 1605
2 TraesCS6A01G046800 chr6D 25747032 25750621 3589 False 1528.666667 3709 90.866667 480 4028 3 chr6D.!!$F2 3548
3 TraesCS6A01G046800 chr6D 25728682 25729668 986 False 319.666667 514 89.689667 1581 2528 3 chr6D.!!$F1 947
4 TraesCS6A01G046800 chr6B 41931628 41937950 6322 False 1350.000000 2708 90.217333 420 4028 3 chr6B.!!$F2 3608
5 TraesCS6A01G046800 chr6B 41919348 41920356 1008 False 328.333333 531 89.269000 1559 2537 3 chr6B.!!$F1 978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.107945 GAGAGAGAGCAAATGGGCGT 60.108 55.0 0.00 0.0 39.27 5.68 F
44 45 0.107945 AGAGAGAGCAAATGGGCGTC 60.108 55.0 0.00 0.0 39.27 5.19 F
52 53 0.108615 CAAATGGGCGTCGAGAGAGT 60.109 55.0 0.00 0.0 43.49 3.24 F
59 60 0.448197 GCGTCGAGAGAGTGTCATGA 59.552 55.0 0.00 0.0 43.49 3.07 F
383 384 0.462047 AGCTAATCGGCCGAAACAGG 60.462 55.0 34.66 20.3 0.00 4.00 F
1513 1550 0.468029 CCCCGGCCTCTGCATAATTT 60.468 55.0 0.00 0.0 40.13 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1513 1550 0.036590 TAGCTGGCTGTGTGCATCAA 59.963 50.000 5.25 0.0 45.15 2.57 R
1829 2007 0.532573 GTCGACAGCTGGAGATGGAA 59.467 55.000 19.93 0.0 35.42 3.53 R
1992 2192 5.457148 CGTCTAGATACATCTGTTTCAGTGC 59.543 44.000 0.00 0.0 37.76 4.40 R
2111 2351 9.605275 CTCATACCTGTTTGATGAAGAATCTTA 57.395 33.333 0.00 0.0 36.15 2.10 R
2480 2753 1.527034 TGAAGCAGGTGTTGAGATGC 58.473 50.000 0.00 0.0 38.97 3.91 R
3113 3535 0.540365 ACATGCACAAGGTGGGGAAG 60.540 55.000 0.00 0.0 33.64 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.452078 GAGAGAGAGAGAGAGAGAGAGAG 57.548 52.174 0.00 0.00 0.00 3.20
23 24 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
24 25 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
25 26 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
26 27 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
27 28 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
28 29 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
29 30 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
30 31 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
31 32 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
32 33 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
33 34 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
34 35 3.378512 AGAGAGAGAGAGAGAGAGAGCA 58.621 50.000 0.00 0.00 0.00 4.26
35 36 3.776969 AGAGAGAGAGAGAGAGAGAGCAA 59.223 47.826 0.00 0.00 0.00 3.91
36 37 4.225942 AGAGAGAGAGAGAGAGAGAGCAAA 59.774 45.833 0.00 0.00 0.00 3.68
37 38 5.104193 AGAGAGAGAGAGAGAGAGAGCAAAT 60.104 44.000 0.00 0.00 0.00 2.32
38 39 4.885907 AGAGAGAGAGAGAGAGAGCAAATG 59.114 45.833 0.00 0.00 0.00 2.32
39 40 3.956199 AGAGAGAGAGAGAGAGCAAATGG 59.044 47.826 0.00 0.00 0.00 3.16
40 41 3.033184 AGAGAGAGAGAGAGCAAATGGG 58.967 50.000 0.00 0.00 0.00 4.00
41 42 1.485895 AGAGAGAGAGAGCAAATGGGC 59.514 52.381 0.00 0.00 0.00 5.36
42 43 0.177604 AGAGAGAGAGCAAATGGGCG 59.822 55.000 0.00 0.00 39.27 6.13
43 44 0.107945 GAGAGAGAGCAAATGGGCGT 60.108 55.000 0.00 0.00 39.27 5.68
44 45 0.107945 AGAGAGAGCAAATGGGCGTC 60.108 55.000 0.00 0.00 39.27 5.19
45 46 1.424493 GAGAGAGCAAATGGGCGTCG 61.424 60.000 0.00 0.00 39.27 5.12
46 47 1.447838 GAGAGCAAATGGGCGTCGA 60.448 57.895 0.00 0.00 39.27 4.20
47 48 1.424493 GAGAGCAAATGGGCGTCGAG 61.424 60.000 0.00 0.00 39.27 4.04
48 49 1.447838 GAGCAAATGGGCGTCGAGA 60.448 57.895 0.00 0.00 39.27 4.04
49 50 1.424493 GAGCAAATGGGCGTCGAGAG 61.424 60.000 0.00 0.00 39.27 3.20
50 51 1.447838 GCAAATGGGCGTCGAGAGA 60.448 57.895 0.00 0.00 38.16 3.10
51 52 1.424493 GCAAATGGGCGTCGAGAGAG 61.424 60.000 0.00 0.00 43.49 3.20
52 53 0.108615 CAAATGGGCGTCGAGAGAGT 60.109 55.000 0.00 0.00 43.49 3.24
53 54 0.108615 AAATGGGCGTCGAGAGAGTG 60.109 55.000 0.00 0.00 43.49 3.51
54 55 1.251527 AATGGGCGTCGAGAGAGTGT 61.252 55.000 0.00 0.00 43.49 3.55
55 56 1.658686 ATGGGCGTCGAGAGAGTGTC 61.659 60.000 0.00 0.00 43.49 3.67
56 57 2.333417 GGGCGTCGAGAGAGTGTCA 61.333 63.158 0.00 0.00 43.49 3.58
57 58 1.658686 GGGCGTCGAGAGAGTGTCAT 61.659 60.000 0.00 0.00 43.49 3.06
58 59 0.524392 GGCGTCGAGAGAGTGTCATG 60.524 60.000 0.00 0.00 43.49 3.07
59 60 0.448197 GCGTCGAGAGAGTGTCATGA 59.552 55.000 0.00 0.00 43.49 3.07
60 61 1.530852 GCGTCGAGAGAGTGTCATGAG 60.531 57.143 0.00 0.00 43.49 2.90
61 62 2.003301 CGTCGAGAGAGTGTCATGAGA 58.997 52.381 0.00 0.00 43.49 3.27
382 383 3.065575 AGCTAATCGGCCGAAACAG 57.934 52.632 34.66 27.35 0.00 3.16
383 384 0.462047 AGCTAATCGGCCGAAACAGG 60.462 55.000 34.66 20.30 0.00 4.00
399 400 1.238439 CAGGCGAACTGGTGATTTGT 58.762 50.000 0.00 0.00 43.70 2.83
400 401 2.422597 CAGGCGAACTGGTGATTTGTA 58.577 47.619 0.00 0.00 43.70 2.41
401 402 2.159627 CAGGCGAACTGGTGATTTGTAC 59.840 50.000 0.00 0.00 43.70 2.90
402 403 1.467342 GGCGAACTGGTGATTTGTACC 59.533 52.381 0.00 0.00 38.71 3.34
403 404 1.127951 GCGAACTGGTGATTTGTACCG 59.872 52.381 0.00 0.00 41.18 4.02
404 405 2.409975 CGAACTGGTGATTTGTACCGT 58.590 47.619 0.00 0.00 41.18 4.83
405 406 2.156891 CGAACTGGTGATTTGTACCGTG 59.843 50.000 0.00 0.00 41.18 4.94
406 407 3.395639 GAACTGGTGATTTGTACCGTGA 58.604 45.455 0.00 0.00 41.18 4.35
407 408 3.040147 ACTGGTGATTTGTACCGTGAG 57.960 47.619 0.00 0.00 41.18 3.51
408 409 2.367567 ACTGGTGATTTGTACCGTGAGT 59.632 45.455 0.00 0.00 41.18 3.41
409 410 2.993899 CTGGTGATTTGTACCGTGAGTC 59.006 50.000 0.00 0.00 41.18 3.36
410 411 2.631062 TGGTGATTTGTACCGTGAGTCT 59.369 45.455 0.00 0.00 41.18 3.24
411 412 3.827876 TGGTGATTTGTACCGTGAGTCTA 59.172 43.478 0.00 0.00 41.18 2.59
412 413 4.082408 TGGTGATTTGTACCGTGAGTCTAG 60.082 45.833 0.00 0.00 41.18 2.43
413 414 4.082354 GGTGATTTGTACCGTGAGTCTAGT 60.082 45.833 0.00 0.00 0.00 2.57
414 415 5.124457 GGTGATTTGTACCGTGAGTCTAGTA 59.876 44.000 0.00 0.00 0.00 1.82
415 416 6.349611 GGTGATTTGTACCGTGAGTCTAGTAA 60.350 42.308 0.00 0.00 0.00 2.24
416 417 7.256286 GTGATTTGTACCGTGAGTCTAGTAAT 58.744 38.462 0.00 0.00 0.00 1.89
417 418 8.400947 GTGATTTGTACCGTGAGTCTAGTAATA 58.599 37.037 0.00 0.00 0.00 0.98
418 419 8.959548 TGATTTGTACCGTGAGTCTAGTAATAA 58.040 33.333 0.00 0.00 0.00 1.40
426 427 5.517770 CGTGAGTCTAGTAATAAAAACCGGG 59.482 44.000 6.32 0.00 0.00 5.73
430 431 9.420118 TGAGTCTAGTAATAAAAACCGGGTATA 57.580 33.333 6.32 0.00 0.00 1.47
461 462 5.390567 CCGCTTCCTGTTTTGTACAAGTATC 60.391 44.000 8.56 2.07 36.02 2.24
464 465 7.117236 CGCTTCCTGTTTTGTACAAGTATCTAA 59.883 37.037 8.56 0.00 36.02 2.10
491 492 2.469826 TGCGTCTGTACTGTGTTTCTG 58.530 47.619 0.00 0.00 0.00 3.02
550 554 3.403558 GGAGGGGCTGAGGTCACC 61.404 72.222 0.00 0.00 0.00 4.02
841 848 4.333649 ACGTCGTCGGTACCCATATATATG 59.666 45.833 14.78 14.78 41.85 1.78
887 894 2.689034 AAAGCTCCCTCCCTCGGG 60.689 66.667 0.00 0.00 46.13 5.14
1014 1039 1.339438 TGAACCATGCAGAGCCTCTTC 60.339 52.381 0.00 0.00 0.00 2.87
1044 1069 0.737715 GCAGGTGAAGACGCGAGAAT 60.738 55.000 15.93 0.00 0.00 2.40
1057 1082 4.693283 ACGCGAGAATGAATCTAATTCCA 58.307 39.130 15.93 0.00 38.96 3.53
1073 1098 4.627611 ATTCCATCTTCGATTGCTGTTG 57.372 40.909 0.00 0.00 0.00 3.33
1150 1187 7.100409 GCTCTTGGTTAATTCTCTACTTGTCT 58.900 38.462 0.00 0.00 0.00 3.41
1162 1199 6.916909 TCTCTACTTGTCTGAGGATCCTAAT 58.083 40.000 16.16 0.00 0.00 1.73
1163 1200 7.358263 TCTCTACTTGTCTGAGGATCCTAATT 58.642 38.462 16.16 1.67 0.00 1.40
1164 1201 7.841729 TCTCTACTTGTCTGAGGATCCTAATTT 59.158 37.037 16.16 0.00 0.00 1.82
1165 1202 8.380742 TCTACTTGTCTGAGGATCCTAATTTT 57.619 34.615 16.16 0.00 0.00 1.82
1209 1246 2.125912 CGCAGGAACCAGAGGACG 60.126 66.667 0.00 0.00 0.00 4.79
1278 1315 6.423862 CAAGTTGCAGGATCAAACATTTTTG 58.576 36.000 0.00 0.00 43.17 2.44
1390 1427 4.009675 TGCAACTGAATAACATGGACTCC 58.990 43.478 0.00 0.00 0.00 3.85
1450 1487 1.760192 ATGATTTGGACTGCCAGCTC 58.240 50.000 0.00 0.00 46.91 4.09
1482 1519 9.817809 AGTATTTTCTTTCCTTTTCCTGAAAAC 57.182 29.630 1.04 0.00 36.61 2.43
1483 1520 7.770801 ATTTTCTTTCCTTTTCCTGAAAACG 57.229 32.000 1.04 0.00 36.61 3.60
1488 1525 3.893521 TCCTTTTCCTGAAAACGAGGTT 58.106 40.909 1.04 0.00 35.57 3.50
1513 1550 0.468029 CCCCGGCCTCTGCATAATTT 60.468 55.000 0.00 0.00 40.13 1.82
1551 1588 6.183360 CCAGCTATACATATAACTGCATGCAC 60.183 42.308 18.46 1.27 33.28 4.57
1573 1610 3.721035 TCTGTCATTATCCACATGCTCG 58.279 45.455 0.00 0.00 0.00 5.03
1606 1643 7.497925 AAAGAAGTTCAGTTACCAATCTGAC 57.502 36.000 5.50 0.00 39.87 3.51
1829 2007 7.283127 TGAAAGTTTTGCTAGTTTCTGATGACT 59.717 33.333 12.37 0.82 37.99 3.41
1902 2080 2.045926 ATGGAGTTCTGCACGCCC 60.046 61.111 0.00 0.00 44.71 6.13
1968 2167 9.595823 AATTCCTTCAAATCTTCAAAGCATATG 57.404 29.630 0.00 0.00 0.00 1.78
2047 2247 6.093219 CAGTGCTAAATACATCTGTTTGAGCT 59.907 38.462 12.06 0.00 30.61 4.09
2066 2266 7.573710 TTGAGCTACAACTAATATGGGACAAT 58.426 34.615 0.00 0.00 36.01 2.71
2111 2351 5.635280 CGTGTCACACTCTGAACTTAATGAT 59.365 40.000 6.33 0.00 31.34 2.45
2444 2717 3.970640 TGTATGCCCACATATACCACTCA 59.029 43.478 0.00 0.00 40.79 3.41
2480 2753 0.036952 TCAAGCTCCAGGAAGAAGCG 60.037 55.000 0.00 0.00 0.00 4.68
2570 2844 4.904251 AGTGCCAACCTCTCATATCTACAT 59.096 41.667 0.00 0.00 0.00 2.29
2571 2845 5.367937 AGTGCCAACCTCTCATATCTACATT 59.632 40.000 0.00 0.00 0.00 2.71
2718 3122 3.932545 TTATGCACACAAACACATCCC 57.067 42.857 0.00 0.00 0.00 3.85
2800 3204 6.540438 TCACCCTATCGACTAGAATTTGTT 57.460 37.500 0.00 0.00 0.00 2.83
2801 3205 6.338146 TCACCCTATCGACTAGAATTTGTTG 58.662 40.000 0.00 0.00 0.00 3.33
2859 3263 7.490962 TTATTCCATAGCGTTTATTCACCAG 57.509 36.000 0.00 0.00 0.00 4.00
3029 3446 1.069204 CATATGGCGTGGACACTAGCT 59.931 52.381 0.00 0.00 0.00 3.32
3062 3479 0.519077 GGCGCTTTCTCCAACAAGAG 59.481 55.000 7.64 0.00 35.04 2.85
3103 3520 4.915667 CAGAGACATCATGTTTGTTGCTTG 59.084 41.667 0.00 1.17 0.00 4.01
3132 3554 0.540365 CTTCCCCACCTTGTGCATGT 60.540 55.000 0.00 0.00 31.34 3.21
3243 3669 1.606606 GCATCAGCGCAGTTTGTTAC 58.393 50.000 11.47 0.00 0.00 2.50
3247 3685 3.980646 TCAGCGCAGTTTGTTACATTT 57.019 38.095 11.47 0.00 0.00 2.32
3301 3739 2.351726 GGGTTATGCGCAGTAGTCAAAG 59.648 50.000 18.32 0.00 0.00 2.77
3312 3750 6.077838 CGCAGTAGTCAAAGTTATTGTTTCC 58.922 40.000 0.00 0.00 0.00 3.13
3313 3751 6.077838 GCAGTAGTCAAAGTTATTGTTTCCG 58.922 40.000 0.00 0.00 0.00 4.30
3368 3901 4.785453 CACCCCCGAAGCAGGAGC 62.785 72.222 0.00 0.00 42.56 4.70
3498 4032 8.983307 AAATTTTGAAATTTTGTGTGTGCATT 57.017 23.077 8.27 0.00 43.91 3.56
3499 4033 8.983307 AATTTTGAAATTTTGTGTGTGCATTT 57.017 23.077 0.00 0.00 35.16 2.32
3500 4034 8.983307 ATTTTGAAATTTTGTGTGTGCATTTT 57.017 23.077 0.00 0.00 0.00 1.82
3501 4035 8.807667 TTTTGAAATTTTGTGTGTGCATTTTT 57.192 23.077 0.00 0.00 0.00 1.94
3527 4061 8.566008 TTCTAAATAGAAAGTTATACGACGGC 57.434 34.615 0.00 0.00 39.22 5.68
3528 4062 7.934457 TCTAAATAGAAAGTTATACGACGGCT 58.066 34.615 0.00 0.00 0.00 5.52
3529 4063 8.072567 TCTAAATAGAAAGTTATACGACGGCTC 58.927 37.037 0.00 0.00 0.00 4.70
3530 4064 3.433513 AGAAAGTTATACGACGGCTCC 57.566 47.619 0.00 0.00 0.00 4.70
3531 4065 3.022406 AGAAAGTTATACGACGGCTCCT 58.978 45.455 0.00 0.00 0.00 3.69
3532 4066 4.202441 AGAAAGTTATACGACGGCTCCTA 58.798 43.478 0.00 0.00 0.00 2.94
3533 4067 4.275443 AGAAAGTTATACGACGGCTCCTAG 59.725 45.833 0.00 0.00 0.00 3.02
3534 4068 3.482156 AGTTATACGACGGCTCCTAGA 57.518 47.619 0.00 0.00 0.00 2.43
3535 4069 3.813443 AGTTATACGACGGCTCCTAGAA 58.187 45.455 0.00 0.00 0.00 2.10
3536 4070 4.202441 AGTTATACGACGGCTCCTAGAAA 58.798 43.478 0.00 0.00 0.00 2.52
3537 4071 4.641989 AGTTATACGACGGCTCCTAGAAAA 59.358 41.667 0.00 0.00 0.00 2.29
3538 4072 5.126061 AGTTATACGACGGCTCCTAGAAAAA 59.874 40.000 0.00 0.00 0.00 1.94
3580 4114 8.470002 GGCAAAGTTTCCAATCTCTACATATTT 58.530 33.333 0.00 0.00 0.00 1.40
3581 4115 9.294030 GCAAAGTTTCCAATCTCTACATATTTG 57.706 33.333 0.00 0.00 0.00 2.32
3586 4120 9.455847 GTTTCCAATCTCTACATATTTGAATGC 57.544 33.333 0.00 0.00 0.00 3.56
3587 4121 8.750515 TTCCAATCTCTACATATTTGAATGCA 57.249 30.769 0.00 0.00 0.00 3.96
3591 4125 8.618677 CAATCTCTACATATTTGAATGCACACT 58.381 33.333 0.00 0.00 0.00 3.55
3593 4127 8.648557 TCTCTACATATTTGAATGCACACTAC 57.351 34.615 0.00 0.00 0.00 2.73
3599 4133 9.791801 ACATATTTGAATGCACACTACCATATA 57.208 29.630 0.00 0.00 0.00 0.86
3617 4151 6.668323 CCATATATGGTTGAATGGTTTCGAC 58.332 40.000 21.85 0.00 43.07 4.20
3618 4152 6.486657 CCATATATGGTTGAATGGTTTCGACT 59.513 38.462 21.85 0.00 43.26 4.18
3619 4153 7.013274 CCATATATGGTTGAATGGTTTCGACTT 59.987 37.037 21.85 0.00 43.26 3.01
3620 4154 6.834168 ATATGGTTGAATGGTTTCGACTTT 57.166 33.333 6.17 0.00 43.26 2.66
3621 4155 4.561735 TGGTTGAATGGTTTCGACTTTC 57.438 40.909 6.17 0.00 43.26 2.62
3622 4156 3.002862 TGGTTGAATGGTTTCGACTTTCG 59.997 43.478 6.17 0.00 43.26 3.46
3698 4232 1.221523 TGAGGGCCACTAGGATCTGAT 59.778 52.381 6.18 0.00 36.89 2.90
3718 4252 1.536766 TGAGCGCCAACATCTTCAAAG 59.463 47.619 2.29 0.00 0.00 2.77
3731 6855 5.954150 ACATCTTCAAAGCCTATCACCATTT 59.046 36.000 0.00 0.00 0.00 2.32
3775 6899 4.992951 ACGTGGAACCTAACAATAAGTGTC 59.007 41.667 0.00 0.00 40.60 3.67
3780 6904 2.991190 ACCTAACAATAAGTGTCGCGTG 59.009 45.455 5.77 0.00 40.60 5.34
3781 6905 2.222729 CCTAACAATAAGTGTCGCGTGC 60.223 50.000 5.77 0.57 40.60 5.34
3782 6906 0.162933 AACAATAAGTGTCGCGTGCG 59.837 50.000 5.77 8.14 40.60 5.34
3783 6907 1.577616 CAATAAGTGTCGCGTGCGC 60.578 57.895 9.79 0.00 39.59 6.09
3815 6939 1.009788 CACACACACACATGCACCG 60.010 57.895 0.00 0.00 0.00 4.94
3900 7024 5.186409 ACAAGGGTAACATGTATGTACGTCT 59.814 40.000 0.00 0.00 40.80 4.18
3983 7109 9.844257 AAAATATTGATTAGAGAGAGGGTGAAG 57.156 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4 5 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
5 6 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
6 7 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
7 8 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
8 9 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
9 10 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
10 11 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
11 12 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
12 13 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
13 14 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
14 15 3.827008 TGCTCTCTCTCTCTCTCTCTC 57.173 52.381 0.00 0.00 0.00 3.20
15 16 4.574674 TTTGCTCTCTCTCTCTCTCTCT 57.425 45.455 0.00 0.00 0.00 3.10
16 17 4.037208 CCATTTGCTCTCTCTCTCTCTCTC 59.963 50.000 0.00 0.00 0.00 3.20
17 18 3.956199 CCATTTGCTCTCTCTCTCTCTCT 59.044 47.826 0.00 0.00 0.00 3.10
18 19 3.068590 CCCATTTGCTCTCTCTCTCTCTC 59.931 52.174 0.00 0.00 0.00 3.20
19 20 3.033184 CCCATTTGCTCTCTCTCTCTCT 58.967 50.000 0.00 0.00 0.00 3.10
20 21 2.483538 GCCCATTTGCTCTCTCTCTCTC 60.484 54.545 0.00 0.00 0.00 3.20
21 22 1.485895 GCCCATTTGCTCTCTCTCTCT 59.514 52.381 0.00 0.00 0.00 3.10
22 23 1.805871 CGCCCATTTGCTCTCTCTCTC 60.806 57.143 0.00 0.00 0.00 3.20
23 24 0.177604 CGCCCATTTGCTCTCTCTCT 59.822 55.000 0.00 0.00 0.00 3.10
24 25 0.107945 ACGCCCATTTGCTCTCTCTC 60.108 55.000 0.00 0.00 0.00 3.20
25 26 0.107945 GACGCCCATTTGCTCTCTCT 60.108 55.000 0.00 0.00 0.00 3.10
26 27 1.424493 CGACGCCCATTTGCTCTCTC 61.424 60.000 0.00 0.00 0.00 3.20
27 28 1.448540 CGACGCCCATTTGCTCTCT 60.449 57.895 0.00 0.00 0.00 3.10
28 29 1.424493 CTCGACGCCCATTTGCTCTC 61.424 60.000 0.00 0.00 0.00 3.20
29 30 1.448540 CTCGACGCCCATTTGCTCT 60.449 57.895 0.00 0.00 0.00 4.09
30 31 1.424493 CTCTCGACGCCCATTTGCTC 61.424 60.000 0.00 0.00 0.00 4.26
31 32 1.448540 CTCTCGACGCCCATTTGCT 60.449 57.895 0.00 0.00 0.00 3.91
32 33 1.424493 CTCTCTCGACGCCCATTTGC 61.424 60.000 0.00 0.00 0.00 3.68
33 34 0.108615 ACTCTCTCGACGCCCATTTG 60.109 55.000 0.00 0.00 0.00 2.32
34 35 0.108615 CACTCTCTCGACGCCCATTT 60.109 55.000 0.00 0.00 0.00 2.32
35 36 1.251527 ACACTCTCTCGACGCCCATT 61.252 55.000 0.00 0.00 0.00 3.16
36 37 1.658686 GACACTCTCTCGACGCCCAT 61.659 60.000 0.00 0.00 0.00 4.00
37 38 2.282251 ACACTCTCTCGACGCCCA 60.282 61.111 0.00 0.00 0.00 5.36
38 39 1.658686 ATGACACTCTCTCGACGCCC 61.659 60.000 0.00 0.00 0.00 6.13
39 40 0.524392 CATGACACTCTCTCGACGCC 60.524 60.000 0.00 0.00 0.00 5.68
40 41 0.448197 TCATGACACTCTCTCGACGC 59.552 55.000 0.00 0.00 0.00 5.19
41 42 2.003301 TCTCATGACACTCTCTCGACG 58.997 52.381 0.00 0.00 0.00 5.12
364 365 0.462047 CCTGTTTCGGCCGATTAGCT 60.462 55.000 31.56 0.00 0.00 3.32
365 366 2.014594 CCTGTTTCGGCCGATTAGC 58.985 57.895 31.56 17.94 0.00 3.09
366 367 2.014594 GCCTGTTTCGGCCGATTAG 58.985 57.895 31.56 24.77 44.41 1.73
367 368 4.211986 GCCTGTTTCGGCCGATTA 57.788 55.556 31.56 17.84 44.41 1.75
373 374 2.556287 CAGTTCGCCTGTTTCGGC 59.444 61.111 0.00 0.00 46.68 5.54
374 375 1.597027 ACCAGTTCGCCTGTTTCGG 60.597 57.895 1.99 0.00 39.74 4.30
375 376 0.878523 TCACCAGTTCGCCTGTTTCG 60.879 55.000 1.99 0.00 39.74 3.46
376 377 1.523758 ATCACCAGTTCGCCTGTTTC 58.476 50.000 1.99 0.00 39.74 2.78
377 378 1.981256 AATCACCAGTTCGCCTGTTT 58.019 45.000 1.99 0.00 39.74 2.83
378 379 1.608590 CAAATCACCAGTTCGCCTGTT 59.391 47.619 1.99 0.00 39.74 3.16
379 380 1.238439 CAAATCACCAGTTCGCCTGT 58.762 50.000 1.99 0.00 39.74 4.00
380 381 1.238439 ACAAATCACCAGTTCGCCTG 58.762 50.000 0.00 0.00 41.15 4.85
381 382 2.423577 GTACAAATCACCAGTTCGCCT 58.576 47.619 0.00 0.00 0.00 5.52
382 383 1.467342 GGTACAAATCACCAGTTCGCC 59.533 52.381 0.00 0.00 36.01 5.54
383 384 1.127951 CGGTACAAATCACCAGTTCGC 59.872 52.381 0.00 0.00 35.67 4.70
384 385 2.156891 CACGGTACAAATCACCAGTTCG 59.843 50.000 0.00 0.00 35.67 3.95
385 386 3.395639 TCACGGTACAAATCACCAGTTC 58.604 45.455 0.00 0.00 35.67 3.01
386 387 3.181458 ACTCACGGTACAAATCACCAGTT 60.181 43.478 0.00 0.00 35.67 3.16
387 388 2.367567 ACTCACGGTACAAATCACCAGT 59.632 45.455 0.00 0.00 35.67 4.00
388 389 2.993899 GACTCACGGTACAAATCACCAG 59.006 50.000 0.00 0.00 35.67 4.00
389 390 2.631062 AGACTCACGGTACAAATCACCA 59.369 45.455 0.00 0.00 35.67 4.17
390 391 3.314541 AGACTCACGGTACAAATCACC 57.685 47.619 0.00 0.00 0.00 4.02
391 392 5.056894 ACTAGACTCACGGTACAAATCAC 57.943 43.478 0.00 0.00 0.00 3.06
392 393 6.822667 TTACTAGACTCACGGTACAAATCA 57.177 37.500 0.00 0.00 0.00 2.57
393 394 9.793252 TTTATTACTAGACTCACGGTACAAATC 57.207 33.333 0.00 0.00 0.00 2.17
395 396 9.979578 TTTTTATTACTAGACTCACGGTACAAA 57.020 29.630 0.00 0.00 0.00 2.83
396 397 9.410556 GTTTTTATTACTAGACTCACGGTACAA 57.589 33.333 0.00 0.00 0.00 2.41
397 398 8.028938 GGTTTTTATTACTAGACTCACGGTACA 58.971 37.037 0.00 0.00 0.00 2.90
398 399 7.218963 CGGTTTTTATTACTAGACTCACGGTAC 59.781 40.741 0.00 0.00 0.00 3.34
399 400 7.250569 CGGTTTTTATTACTAGACTCACGGTA 58.749 38.462 0.00 0.00 0.00 4.02
400 401 6.095377 CGGTTTTTATTACTAGACTCACGGT 58.905 40.000 0.00 0.00 0.00 4.83
401 402 5.517770 CCGGTTTTTATTACTAGACTCACGG 59.482 44.000 0.00 0.00 0.00 4.94
402 403 5.517770 CCCGGTTTTTATTACTAGACTCACG 59.482 44.000 0.00 0.00 0.00 4.35
403 404 6.401394 ACCCGGTTTTTATTACTAGACTCAC 58.599 40.000 0.00 0.00 0.00 3.51
404 405 6.610075 ACCCGGTTTTTATTACTAGACTCA 57.390 37.500 0.00 0.00 0.00 3.41
407 408 8.929746 GCATATACCCGGTTTTTATTACTAGAC 58.070 37.037 0.00 0.00 0.00 2.59
408 409 8.649591 TGCATATACCCGGTTTTTATTACTAGA 58.350 33.333 0.00 0.00 0.00 2.43
409 410 8.836268 TGCATATACCCGGTTTTTATTACTAG 57.164 34.615 0.00 0.00 0.00 2.57
410 411 9.796180 AATGCATATACCCGGTTTTTATTACTA 57.204 29.630 0.00 0.00 0.00 1.82
411 412 8.700439 AATGCATATACCCGGTTTTTATTACT 57.300 30.769 0.00 0.00 0.00 2.24
412 413 8.024865 GGAATGCATATACCCGGTTTTTATTAC 58.975 37.037 0.00 0.00 0.00 1.89
413 414 7.094720 CGGAATGCATATACCCGGTTTTTATTA 60.095 37.037 16.94 0.00 36.81 0.98
414 415 6.294286 CGGAATGCATATACCCGGTTTTTATT 60.294 38.462 16.94 0.00 36.81 1.40
415 416 5.182380 CGGAATGCATATACCCGGTTTTTAT 59.818 40.000 16.94 0.00 36.81 1.40
416 417 4.515944 CGGAATGCATATACCCGGTTTTTA 59.484 41.667 16.94 0.00 36.81 1.52
417 418 3.316868 CGGAATGCATATACCCGGTTTTT 59.683 43.478 16.94 0.00 36.81 1.94
418 419 2.882137 CGGAATGCATATACCCGGTTTT 59.118 45.455 16.94 0.00 36.81 2.43
461 462 2.666508 AGTACAGACGCAAACGCATTAG 59.333 45.455 0.00 0.00 45.53 1.73
464 465 0.790207 CAGTACAGACGCAAACGCAT 59.210 50.000 0.00 0.00 45.53 4.73
525 527 4.559063 CAGCCCCTCCTCCATGCG 62.559 72.222 0.00 0.00 0.00 4.73
526 528 3.092511 TCAGCCCCTCCTCCATGC 61.093 66.667 0.00 0.00 0.00 4.06
550 554 4.443034 GCTATACCCGGCCTTTCCATATAG 60.443 50.000 0.00 5.27 34.08 1.31
772 777 2.988839 AAAGGGCTAGGCTGGCTGG 61.989 63.158 22.53 12.43 0.00 4.85
773 778 1.751927 CAAAGGGCTAGGCTGGCTG 60.752 63.158 22.53 9.06 0.00 4.85
774 779 2.203549 GACAAAGGGCTAGGCTGGCT 62.204 60.000 22.53 9.28 0.00 4.75
786 791 9.150348 GAGAGAAAGAAATAAGAGAGACAAAGG 57.850 37.037 0.00 0.00 0.00 3.11
841 848 1.884579 TGACGTCTACCTGAACTCCAC 59.115 52.381 17.92 0.00 0.00 4.02
887 894 2.231478 TCGACAAGGACAGAGGATTGAC 59.769 50.000 0.00 0.00 0.00 3.18
994 1016 0.694771 AAGAGGCTCTGCATGGTTCA 59.305 50.000 19.53 0.00 0.00 3.18
1044 1069 6.994496 AGCAATCGAAGATGGAATTAGATTCA 59.006 34.615 0.00 0.00 45.12 2.57
1057 1082 5.934625 AGAAACTACAACAGCAATCGAAGAT 59.065 36.000 0.00 0.00 45.12 2.40
1073 1098 7.096884 AGAACCCAAAGAAACAAGAAACTAC 57.903 36.000 0.00 0.00 0.00 2.73
1171 1208 3.913089 GAGCCAATCGAAACACCAAATT 58.087 40.909 0.00 0.00 0.00 1.82
1187 1224 2.922503 TCTGGTTCCTGCGAGCCA 60.923 61.111 0.00 0.00 46.20 4.75
1209 1246 1.528129 CACTCTTCTTGGGCCTGAAC 58.472 55.000 4.53 0.00 0.00 3.18
1278 1315 4.219033 CCAATGTTTGTCGAAGTTGCTAC 58.781 43.478 0.00 0.00 0.00 3.58
1356 1393 1.023513 CAGTTGCAGGTAGCCAGAGC 61.024 60.000 0.00 0.00 44.83 4.09
1357 1394 0.610174 TCAGTTGCAGGTAGCCAGAG 59.390 55.000 0.00 0.00 44.83 3.35
1358 1395 1.055849 TTCAGTTGCAGGTAGCCAGA 58.944 50.000 0.00 0.00 44.83 3.86
1360 1397 3.244735 TGTTATTCAGTTGCAGGTAGCCA 60.245 43.478 0.00 0.00 44.83 4.75
1361 1398 3.343617 TGTTATTCAGTTGCAGGTAGCC 58.656 45.455 0.00 0.00 44.83 3.93
1362 1399 4.201950 CCATGTTATTCAGTTGCAGGTAGC 60.202 45.833 0.00 0.00 45.96 3.58
1364 1401 4.941263 GTCCATGTTATTCAGTTGCAGGTA 59.059 41.667 0.00 0.00 0.00 3.08
1366 1403 4.012374 AGTCCATGTTATTCAGTTGCAGG 58.988 43.478 0.00 0.00 0.00 4.85
1367 1404 4.095483 GGAGTCCATGTTATTCAGTTGCAG 59.905 45.833 3.60 0.00 0.00 4.41
1369 1406 4.009675 TGGAGTCCATGTTATTCAGTTGC 58.990 43.478 8.12 0.00 0.00 4.17
1370 1407 6.375174 TGAATGGAGTCCATGTTATTCAGTTG 59.625 38.462 25.51 0.00 44.40 3.16
1371 1408 6.484288 TGAATGGAGTCCATGTTATTCAGTT 58.516 36.000 25.51 6.22 44.40 3.16
1372 1409 6.065976 TGAATGGAGTCCATGTTATTCAGT 57.934 37.500 25.51 6.16 44.40 3.41
1474 1511 3.349488 GGTTTCAACCTCGTTTTCAGG 57.651 47.619 1.08 0.00 45.75 3.86
1488 1525 3.646715 CAGAGGCCGGGGGTTTCA 61.647 66.667 2.18 0.00 0.00 2.69
1513 1550 0.036590 TAGCTGGCTGTGTGCATCAA 59.963 50.000 5.25 0.00 45.15 2.57
1551 1588 3.739810 CGAGCATGTGGATAATGACAGAG 59.260 47.826 0.00 0.00 0.00 3.35
1573 1610 3.211865 ACTGAACTTCTTTTTCCGGGTC 58.788 45.455 0.00 0.00 0.00 4.46
1606 1643 6.759356 TGTACGTACAGTCCAAAATATGATGG 59.241 38.462 24.10 1.39 38.09 3.51
1829 2007 0.532573 GTCGACAGCTGGAGATGGAA 59.467 55.000 19.93 0.00 35.42 3.53
1968 2167 9.224267 TGCTAATTAATATGAGAAGAATGGAGC 57.776 33.333 0.00 0.00 0.00 4.70
1992 2192 5.457148 CGTCTAGATACATCTGTTTCAGTGC 59.543 44.000 0.00 0.00 37.76 4.40
2111 2351 9.605275 CTCATACCTGTTTGATGAAGAATCTTA 57.395 33.333 0.00 0.00 36.15 2.10
2480 2753 1.527034 TGAAGCAGGTGTTGAGATGC 58.473 50.000 0.00 0.00 38.97 3.91
2588 2983 9.856162 AAACTACCAAGGAAACTAAATCACTTA 57.144 29.630 0.00 0.00 42.68 2.24
2592 2987 7.064229 ACCAAACTACCAAGGAAACTAAATCA 58.936 34.615 0.00 0.00 42.68 2.57
2595 2990 6.321945 GGAACCAAACTACCAAGGAAACTAAA 59.678 38.462 0.00 0.00 42.68 1.85
2605 3000 5.476599 CAGAATCATGGAACCAAACTACCAA 59.523 40.000 0.00 0.00 36.00 3.67
2641 3041 5.122512 TCAAAATATTGAACGCCGGAAAA 57.877 34.783 5.05 0.00 42.47 2.29
2718 3122 4.122776 AGTGTGCTTCCTAAGAATATGCG 58.877 43.478 0.00 0.00 0.00 4.73
2859 3263 2.352034 TCGAGACGAGAGATGTAGCAAC 59.648 50.000 0.00 0.00 0.00 4.17
2890 3295 1.544724 ACCGCACAAGGCATTACAAT 58.455 45.000 0.00 0.00 45.17 2.71
2959 3376 5.457140 CAGCTCTGACCTATCGATTAACTC 58.543 45.833 1.71 0.00 0.00 3.01
3029 3446 3.334583 AAGCGCCAGTTATTTCTCTCA 57.665 42.857 2.29 0.00 0.00 3.27
3062 3479 1.505353 GCACTGTTGCCTCATCAGC 59.495 57.895 5.16 0.00 43.66 4.26
3103 3520 1.560146 AGGTGGGGAAGCTAGCTAAAC 59.440 52.381 19.70 12.37 33.90 2.01
3113 3535 0.540365 ACATGCACAAGGTGGGGAAG 60.540 55.000 0.00 0.00 33.64 3.46
3132 3554 6.345298 TCACGAAAATATAGATGAAGGTGCA 58.655 36.000 0.00 0.00 0.00 4.57
3230 3656 6.362283 ACTGATAAAAATGTAACAAACTGCGC 59.638 34.615 0.00 0.00 0.00 6.09
3242 3668 5.505780 TCCGGGATGAACTGATAAAAATGT 58.494 37.500 0.00 0.00 0.00 2.71
3243 3669 6.449635 TTCCGGGATGAACTGATAAAAATG 57.550 37.500 0.00 0.00 0.00 2.32
3247 3685 6.889722 AGAAATTTCCGGGATGAACTGATAAA 59.110 34.615 14.61 0.00 0.00 1.40
3368 3901 7.986085 TTGATTCTTGAAAGTCCTTTAGAGG 57.014 36.000 0.00 0.00 45.02 3.69
3410 3944 5.576447 ATTCATGGAAAACACGGGAATAC 57.424 39.130 0.00 0.00 30.51 1.89
3501 4035 9.023967 GCCGTCGTATAACTTTCTATTTAGAAA 57.976 33.333 11.26 11.26 46.70 2.52
3502 4036 8.408601 AGCCGTCGTATAACTTTCTATTTAGAA 58.591 33.333 0.00 0.00 40.33 2.10
3503 4037 7.934457 AGCCGTCGTATAACTTTCTATTTAGA 58.066 34.615 0.00 0.00 0.00 2.10
3504 4038 7.325579 GGAGCCGTCGTATAACTTTCTATTTAG 59.674 40.741 0.00 0.00 0.00 1.85
3505 4039 7.013655 AGGAGCCGTCGTATAACTTTCTATTTA 59.986 37.037 0.00 0.00 0.00 1.40
3506 4040 5.981915 GGAGCCGTCGTATAACTTTCTATTT 59.018 40.000 0.00 0.00 0.00 1.40
3507 4041 5.301298 AGGAGCCGTCGTATAACTTTCTATT 59.699 40.000 0.00 0.00 0.00 1.73
3508 4042 4.826183 AGGAGCCGTCGTATAACTTTCTAT 59.174 41.667 0.00 0.00 0.00 1.98
3509 4043 4.202441 AGGAGCCGTCGTATAACTTTCTA 58.798 43.478 0.00 0.00 0.00 2.10
3510 4044 3.022406 AGGAGCCGTCGTATAACTTTCT 58.978 45.455 0.00 0.00 0.00 2.52
3511 4045 3.433513 AGGAGCCGTCGTATAACTTTC 57.566 47.619 0.00 0.00 0.00 2.62
3512 4046 4.202441 TCTAGGAGCCGTCGTATAACTTT 58.798 43.478 0.00 0.00 0.00 2.66
3513 4047 3.813443 TCTAGGAGCCGTCGTATAACTT 58.187 45.455 0.00 0.00 0.00 2.66
3514 4048 3.482156 TCTAGGAGCCGTCGTATAACT 57.518 47.619 0.00 0.00 0.00 2.24
3515 4049 4.558538 TTTCTAGGAGCCGTCGTATAAC 57.441 45.455 0.00 0.00 0.00 1.89
3516 4050 5.581126 TTTTTCTAGGAGCCGTCGTATAA 57.419 39.130 0.00 0.00 0.00 0.98
3560 4094 9.455847 GCATTCAAATATGTAGAGATTGGAAAC 57.544 33.333 1.55 0.00 28.68 2.78
3593 4127 6.486657 AGTCGAAACCATTCAACCATATATGG 59.513 38.462 27.16 27.16 43.53 2.74
3599 4133 4.320202 CGAAAGTCGAAACCATTCAACCAT 60.320 41.667 0.00 0.00 43.74 3.55
3601 4135 3.249080 TCGAAAGTCGAAACCATTCAACC 59.751 43.478 0.00 0.00 46.90 3.77
3617 4151 4.142622 TGCTTTGGCATTGATACTCGAAAG 60.143 41.667 0.00 0.00 44.28 2.62
3618 4152 3.755905 TGCTTTGGCATTGATACTCGAAA 59.244 39.130 0.00 0.00 44.28 3.46
3619 4153 3.342719 TGCTTTGGCATTGATACTCGAA 58.657 40.909 0.00 0.00 44.28 3.71
3620 4154 2.984562 TGCTTTGGCATTGATACTCGA 58.015 42.857 0.00 0.00 44.28 4.04
3646 4180 9.429109 ACCCTTCTCTTTTCCTTATTTTGTAAA 57.571 29.630 0.00 0.00 0.00 2.01
3664 4198 2.618302 GGCCCTCAAGTTTACCCTTCTC 60.618 54.545 0.00 0.00 0.00 2.87
3669 4203 0.404426 AGTGGCCCTCAAGTTTACCC 59.596 55.000 0.00 0.00 0.00 3.69
3698 4232 1.536766 CTTTGAAGATGTTGGCGCTCA 59.463 47.619 7.64 5.07 0.00 4.26
3718 4252 6.770785 TGTGGATTTAGTAAATGGTGATAGGC 59.229 38.462 12.86 0.00 0.00 3.93
3731 6855 5.297278 ACGTTGTTTTGCTGTGGATTTAGTA 59.703 36.000 0.00 0.00 0.00 1.82
3815 6939 2.258726 GCCCCACGTTTGACCACTC 61.259 63.158 0.00 0.00 0.00 3.51
3892 7016 7.640616 TTGAATCAACGAATTTAGACGTACA 57.359 32.000 0.00 0.00 41.87 2.90
3900 7024 8.181573 GGCTTACTCATTGAATCAACGAATTTA 58.818 33.333 0.00 0.00 0.00 1.40
3983 7109 5.813080 ATGTTAAAATCCGTAGTTGCCTC 57.187 39.130 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.