Multiple sequence alignment - TraesCS6A01G046700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G046700 chr6A 100.000 4429 0 0 1 4429 23848639 23853067 0.000000e+00 8179.0
1 TraesCS6A01G046700 chr6A 86.624 471 38 18 2532 2998 23865623 23866072 8.560000e-137 497.0
2 TraesCS6A01G046700 chr6A 79.070 559 83 18 3076 3616 23866219 23866761 1.960000e-93 353.0
3 TraesCS6A01G046700 chr6A 92.683 164 5 5 1903 2064 23865156 23865314 3.450000e-56 230.0
4 TraesCS6A01G046700 chr6A 91.667 144 8 2 2209 2348 23865359 23865502 3.490000e-46 196.0
5 TraesCS6A01G046700 chr6B 94.533 1006 42 3 3084 4081 41920878 41921878 0.000000e+00 1541.0
6 TraesCS6A01G046700 chr6B 94.208 518 21 6 1864 2373 41919370 41919886 0.000000e+00 782.0
7 TraesCS6A01G046700 chr6B 92.179 537 22 10 2532 3067 41919898 41920415 0.000000e+00 741.0
8 TraesCS6A01G046700 chr6B 79.659 821 63 40 680 1483 41918229 41918962 3.080000e-136 496.0
9 TraesCS6A01G046700 chr6B 85.774 478 47 14 2525 2998 41933252 41933712 1.850000e-133 486.0
10 TraesCS6A01G046700 chr6B 78.405 514 80 17 3076 3570 41933984 41934485 5.570000e-79 305.0
11 TraesCS6A01G046700 chr6B 88.073 218 17 4 1525 1738 41918967 41919179 2.640000e-62 250.0
12 TraesCS6A01G046700 chr6B 95.714 140 5 1 1903 2041 41932789 41932928 1.600000e-54 224.0
13 TraesCS6A01G046700 chr6B 89.941 169 7 6 2379 2541 138631937 138632101 4.490000e-50 209.0
14 TraesCS6A01G046700 chr6B 91.667 144 8 2 2209 2348 41932994 41933137 3.490000e-46 196.0
15 TraesCS6A01G046700 chr6B 82.075 212 30 4 166 376 41924292 41924496 1.640000e-39 174.0
16 TraesCS6A01G046700 chr6B 90.426 94 2 3 4336 4429 41921874 41921960 2.800000e-22 117.0
17 TraesCS6A01G046700 chr6B 91.429 70 4 2 1395 1463 41932375 41932443 1.310000e-15 95.3
18 TraesCS6A01G046700 chr6D 89.673 978 76 13 3075 4032 25730351 25731323 0.000000e+00 1223.0
19 TraesCS6A01G046700 chr6D 85.446 1120 87 36 376 1483 25727226 25728281 0.000000e+00 1096.0
20 TraesCS6A01G046700 chr6D 93.673 648 32 5 1736 2382 25728558 25729197 0.000000e+00 961.0
21 TraesCS6A01G046700 chr6D 92.883 562 24 7 2527 3080 25729197 25729750 0.000000e+00 802.0
22 TraesCS6A01G046700 chr6D 92.368 380 23 3 1 376 25726819 25727196 1.810000e-148 536.0
23 TraesCS6A01G046700 chr6D 86.820 478 38 17 2525 2998 25748617 25749073 1.100000e-140 510.0
24 TraesCS6A01G046700 chr6D 91.429 245 16 4 1498 1738 25728266 25728509 9.180000e-87 331.0
25 TraesCS6A01G046700 chr6D 92.683 164 5 5 1903 2064 25748150 25748308 3.450000e-56 230.0
26 TraesCS6A01G046700 chr6D 91.429 140 8 2 2213 2348 25748364 25748503 5.850000e-44 189.0
27 TraesCS6A01G046700 chr6D 78.302 212 26 12 166 376 25742424 25742616 7.780000e-23 119.0
28 TraesCS6A01G046700 chr6D 91.250 80 4 3 1385 1463 25747720 25747797 6.060000e-19 106.0
29 TraesCS6A01G046700 chr2A 92.735 234 15 2 4102 4334 677889554 677889322 1.970000e-88 337.0
30 TraesCS6A01G046700 chr2A 92.045 176 12 1 4088 4261 752053333 752053508 3.420000e-61 246.0
31 TraesCS6A01G046700 chr2A 91.379 58 5 0 2901 2958 762978013 762977956 3.670000e-11 80.5
32 TraesCS6A01G046700 chr7B 89.919 248 22 2 4090 4335 749125124 749125370 2.570000e-82 316.0
33 TraesCS6A01G046700 chr7B 83.700 227 33 3 4113 4335 74108346 74108120 1.250000e-50 211.0
34 TraesCS6A01G046700 chr7B 90.446 157 10 5 2379 2531 437671213 437671058 7.510000e-48 202.0
35 TraesCS6A01G046700 chr1B 88.000 250 18 4 4082 4328 34992644 34992884 7.250000e-73 285.0
36 TraesCS6A01G046700 chr1B 88.136 236 14 5 4102 4335 687309975 687309752 7.300000e-68 268.0
37 TraesCS6A01G046700 chr1B 87.500 88 9 1 527 612 47204851 47204938 2.820000e-17 100.0
38 TraesCS6A01G046700 chr1B 88.312 77 6 3 2112 2186 667371067 667371142 6.100000e-14 89.8
39 TraesCS6A01G046700 chr4B 86.692 263 16 11 4081 4339 12134355 12134108 1.570000e-69 274.0
40 TraesCS6A01G046700 chr4B 91.558 154 10 2 2378 2529 7042417 7042569 4.490000e-50 209.0
41 TraesCS6A01G046700 chr4B 80.400 250 47 2 4085 4332 582957471 582957222 5.850000e-44 189.0
42 TraesCS6A01G046700 chr4B 95.455 66 2 1 2119 2184 103018956 103018892 2.180000e-18 104.0
43 TraesCS6A01G046700 chr4A 88.596 228 20 4 4113 4335 628005297 628005523 5.640000e-69 272.0
44 TraesCS6A01G046700 chr7D 85.771 253 24 8 4084 4335 88078054 88077813 1.580000e-64 257.0
45 TraesCS6A01G046700 chr7D 86.250 80 10 1 2110 2189 36501347 36501425 7.890000e-13 86.1
46 TraesCS6A01G046700 chr7D 87.013 77 8 2 2110 2186 610531262 610531336 7.890000e-13 86.1
47 TraesCS6A01G046700 chr3A 96.026 151 4 2 2379 2528 745072575 745072426 1.230000e-60 244.0
48 TraesCS6A01G046700 chr3A 95.364 151 5 2 2379 2528 744995482 744995333 5.730000e-59 239.0
49 TraesCS6A01G046700 chr1D 90.909 176 12 3 4113 4284 481930956 481931131 2.660000e-57 233.0
50 TraesCS6A01G046700 chr1D 97.368 38 1 0 4298 4335 481931127 481931164 1.030000e-06 65.8
51 TraesCS6A01G046700 chr4D 92.857 154 8 2 2378 2529 458556317 458556165 2.070000e-53 220.0
52 TraesCS6A01G046700 chr4D 90.789 76 3 4 2111 2185 69660743 69660671 1.010000e-16 99.0
53 TraesCS6A01G046700 chr4D 97.143 35 1 0 555 589 465909466 465909432 4.780000e-05 60.2
54 TraesCS6A01G046700 chr5D 90.506 158 8 3 2378 2529 230650990 230650834 7.510000e-48 202.0
55 TraesCS6A01G046700 chr3B 90.446 157 8 4 2388 2539 628403796 628403642 2.700000e-47 200.0
56 TraesCS6A01G046700 chrUn 88.757 169 9 6 2379 2541 194986617 194986453 9.720000e-47 198.0
57 TraesCS6A01G046700 chr1A 88.372 86 8 2 528 611 511634439 511634524 7.840000e-18 102.0
58 TraesCS6A01G046700 chr7A 76.471 204 34 10 1521 1722 439633265 439633456 1.010000e-16 99.0
59 TraesCS6A01G046700 chr7A 88.060 67 7 1 549 615 19165473 19165408 1.320000e-10 78.7
60 TraesCS6A01G046700 chr5A 93.750 64 4 0 2111 2174 316082637 316082574 3.650000e-16 97.1
61 TraesCS6A01G046700 chr5A 94.444 36 2 0 555 590 36050334 36050299 6.190000e-04 56.5
62 TraesCS6A01G046700 chr5A 94.444 36 2 0 555 590 36105085 36105050 6.190000e-04 56.5
63 TraesCS6A01G046700 chr5A 94.444 36 2 0 555 590 36133608 36133573 6.190000e-04 56.5
64 TraesCS6A01G046700 chr3D 87.342 79 9 1 535 612 559226402 559226480 6.100000e-14 89.8
65 TraesCS6A01G046700 chr3D 87.179 78 8 2 2111 2186 431618406 431618483 2.190000e-13 87.9
66 TraesCS6A01G046700 chr2B 91.071 56 5 0 2901 2956 794580403 794580458 4.750000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G046700 chr6A 23848639 23853067 4428 False 8179.000000 8179 100.000000 1 4429 1 chr6A.!!$F1 4428
1 TraesCS6A01G046700 chr6A 23865156 23866761 1605 False 319.000000 497 87.511000 1903 3616 4 chr6A.!!$F2 1713
2 TraesCS6A01G046700 chr6B 41918229 41924496 6267 False 585.857143 1541 88.736143 166 4429 7 chr6B.!!$F2 4263
3 TraesCS6A01G046700 chr6B 41932375 41934485 2110 False 261.260000 486 88.597800 1395 3570 5 chr6B.!!$F3 2175
4 TraesCS6A01G046700 chr6D 25726819 25731323 4504 False 824.833333 1223 90.912000 1 4032 6 chr6D.!!$F2 4031
5 TraesCS6A01G046700 chr6D 25747720 25749073 1353 False 258.750000 510 90.545500 1385 2998 4 chr6D.!!$F3 1613

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 501 0.108329 ATACAGCTGCACACCGTACC 60.108 55.0 15.27 0.00 0.0 3.34 F
1043 1101 0.374410 GTAGACGTCAGAGCTCCGAC 59.626 60.0 18.47 18.47 0.0 4.79 F
2334 2689 0.034337 TCAGCCGGTCCAAAGTACAC 59.966 55.0 1.90 0.00 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1334 1398 0.397941 TGGCCTTCCTCAGACAAGTG 59.602 55.000 3.32 0.00 0.00 3.16 R
2681 3041 0.179034 ATTCTTCATCGAGCTGGGCC 60.179 55.000 0.00 0.00 0.00 5.80 R
4291 5498 1.344438 AGAGCCCATCGAAATATGCGA 59.656 47.619 3.77 3.77 42.48 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.576774 TCATGTGCTGTCTTCTTGTTATACG 59.423 40.000 0.00 0.00 0.00 3.06
41 42 6.818142 TGTTATACGATCTAATGATGGCCATG 59.182 38.462 26.56 8.52 35.24 3.66
55 56 4.502105 TGGCCATGCTACTTTCTGATAA 57.498 40.909 0.00 0.00 0.00 1.75
62 63 9.273016 GCCATGCTACTTTCTGATAACTAAATA 57.727 33.333 0.00 0.00 0.00 1.40
87 90 7.913674 ATTTTTGAGCTAAAATCTCTCTCGT 57.086 32.000 0.00 0.00 38.03 4.18
97 100 4.712122 AATCTCTCTCGTCCTCTTTCAC 57.288 45.455 0.00 0.00 0.00 3.18
103 106 4.082517 TCTCTCGTCCTCTTTCACTCATTG 60.083 45.833 0.00 0.00 0.00 2.82
124 127 4.686191 GGATATATCCATCTGCAGAGGG 57.314 50.000 36.06 36.06 46.62 4.30
125 128 3.390639 GGATATATCCATCTGCAGAGGGG 59.609 52.174 38.99 31.47 45.41 4.79
176 181 1.126488 ACGGTGATCAGCCTGATGAT 58.874 50.000 12.92 0.00 42.62 2.45
191 196 4.272018 CCTGATGATCGATGAAAACAGGTC 59.728 45.833 19.50 1.61 38.83 3.85
201 206 5.356751 CGATGAAAACAGGTCCCAATCATTA 59.643 40.000 0.00 0.00 0.00 1.90
203 208 5.886609 TGAAAACAGGTCCCAATCATTAGA 58.113 37.500 0.00 0.00 0.00 2.10
210 215 3.065371 GGTCCCAATCATTAGAAAGTGCG 59.935 47.826 0.00 0.00 0.00 5.34
344 349 0.464554 AGAAAGGCTATTCCGCTGGC 60.465 55.000 0.00 0.00 40.77 4.85
378 413 5.386958 TGACTATGTTGTGTACTCCAGAC 57.613 43.478 0.00 0.00 0.00 3.51
384 419 2.996621 GTTGTGTACTCCAGACAGATGC 59.003 50.000 0.00 0.00 31.04 3.91
387 422 3.444034 TGTGTACTCCAGACAGATGCTAC 59.556 47.826 0.00 0.00 0.00 3.58
392 427 1.202348 TCCAGACAGATGCTACACACG 59.798 52.381 0.00 0.00 0.00 4.49
399 434 1.135660 AGATGCTACACACGACGACAG 60.136 52.381 0.00 0.00 0.00 3.51
417 453 1.446272 GGCTCCAGACGACTTTCGG 60.446 63.158 0.03 0.00 45.59 4.30
421 457 1.443872 CCAGACGACTTTCGGACGG 60.444 63.158 0.03 0.00 45.59 4.79
447 483 2.108514 CATCAAGCCGTCCGTGCAT 61.109 57.895 0.00 0.00 0.00 3.96
450 486 1.739929 CAAGCCGTCCGTGCATACA 60.740 57.895 0.00 0.00 0.00 2.29
453 489 2.184322 CCGTCCGTGCATACAGCT 59.816 61.111 0.00 0.00 45.94 4.24
454 490 2.167219 CCGTCCGTGCATACAGCTG 61.167 63.158 13.48 13.48 45.94 4.24
455 491 2.802667 CGTCCGTGCATACAGCTGC 61.803 63.158 15.27 0.04 45.94 5.25
460 496 3.985877 TGCATACAGCTGCACACC 58.014 55.556 15.27 0.00 46.76 4.16
461 497 2.034317 TGCATACAGCTGCACACCG 61.034 57.895 15.27 0.00 46.76 4.94
462 498 2.034879 GCATACAGCTGCACACCGT 61.035 57.895 15.27 0.00 41.87 4.83
463 499 0.739462 GCATACAGCTGCACACCGTA 60.739 55.000 15.27 0.00 41.87 4.02
464 500 0.999406 CATACAGCTGCACACCGTAC 59.001 55.000 15.27 0.00 0.00 3.67
465 501 0.108329 ATACAGCTGCACACCGTACC 60.108 55.000 15.27 0.00 0.00 3.34
515 551 2.574322 CAAAGTTCGCTTGACAATCCG 58.426 47.619 0.00 0.00 37.53 4.18
553 589 9.744468 AAATCTTAAAATCCGAAATAATTCCCG 57.256 29.630 0.00 0.00 31.52 5.14
581 617 3.531538 GCATATTTCAGTGAGGTCCGAA 58.468 45.455 0.00 0.00 0.00 4.30
588 624 3.815809 TCAGTGAGGTCCGAAATTGTTT 58.184 40.909 0.00 0.00 0.00 2.83
593 629 4.502645 GTGAGGTCCGAAATTGTTTTGTTG 59.497 41.667 0.00 0.00 0.00 3.33
598 634 2.470999 CCGAAATTGTTTTGTTGCCGAG 59.529 45.455 0.00 0.00 0.00 4.63
602 638 4.582701 AATTGTTTTGTTGCCGAGATCA 57.417 36.364 0.00 0.00 0.00 2.92
613 649 2.552315 TGCCGAGATCAAAAACCTTGAC 59.448 45.455 0.00 0.00 0.00 3.18
642 678 3.988379 TGCAAACAGAAAGTGGCTAAG 57.012 42.857 0.00 0.00 33.76 2.18
648 684 6.659776 CAAACAGAAAGTGGCTAAGACTTAC 58.340 40.000 0.00 0.00 33.20 2.34
649 685 5.546621 ACAGAAAGTGGCTAAGACTTACA 57.453 39.130 0.00 0.00 33.20 2.41
659 695 5.637810 TGGCTAAGACTTACAAATTCACTCG 59.362 40.000 0.00 0.00 0.00 4.18
678 714 4.117685 CTCGTAATACCTAGGGTGTTTGC 58.882 47.826 14.81 3.79 38.05 3.68
686 722 2.093658 CCTAGGGTGTTTGCGTCTGTAT 60.094 50.000 0.00 0.00 0.00 2.29
691 727 2.289547 GGTGTTTGCGTCTGTATTGTGT 59.710 45.455 0.00 0.00 0.00 3.72
699 735 8.536407 GTTTGCGTCTGTATTGTGTTTAAATTT 58.464 29.630 0.00 0.00 0.00 1.82
702 738 9.900710 TGCGTCTGTATTGTGTTTAAATTTAAT 57.099 25.926 11.33 0.00 0.00 1.40
834 874 5.011023 GGATTGGATTGGATTAAGCGGAAAT 59.989 40.000 0.00 0.00 0.00 2.17
835 875 4.916983 TGGATTGGATTAAGCGGAAATG 57.083 40.909 0.00 0.00 0.00 2.32
880 920 1.282248 CGTGAGTGGGTAACAGCACG 61.282 60.000 0.00 0.00 46.16 5.34
935 991 4.415150 ACGGTGCCAGCCTCCATG 62.415 66.667 0.00 0.00 0.00 3.66
966 1022 2.493973 CAGCCTGTCTCTCGCTCC 59.506 66.667 0.00 0.00 0.00 4.70
968 1024 2.183046 GCCTGTCTCTCGCTCCAC 59.817 66.667 0.00 0.00 0.00 4.02
970 1026 1.680651 CCTGTCTCTCGCTCCACCT 60.681 63.158 0.00 0.00 0.00 4.00
972 1028 0.679640 CTGTCTCTCGCTCCACCTCT 60.680 60.000 0.00 0.00 0.00 3.69
973 1029 0.678366 TGTCTCTCGCTCCACCTCTC 60.678 60.000 0.00 0.00 0.00 3.20
1008 1064 2.658285 CGTACGTCAGGTATGGCATAC 58.342 52.381 25.92 25.92 34.98 2.39
1013 1069 6.183360 CGTACGTCAGGTATGGCATACATATA 60.183 42.308 32.19 17.98 43.55 0.86
1014 1070 6.791867 ACGTCAGGTATGGCATACATATAT 57.208 37.500 32.19 14.54 43.55 0.86
1015 1071 6.573434 ACGTCAGGTATGGCATACATATATG 58.427 40.000 32.19 24.01 43.55 1.78
1016 1072 5.985530 CGTCAGGTATGGCATACATATATGG 59.014 44.000 32.19 17.19 43.55 2.74
1017 1073 6.183360 CGTCAGGTATGGCATACATATATGGA 60.183 42.308 32.19 18.92 43.55 3.41
1018 1074 6.986817 GTCAGGTATGGCATACATATATGGAC 59.013 42.308 32.19 24.42 43.55 4.02
1036 1094 2.420722 GGACTTCAGGTAGACGTCAGAG 59.579 54.545 19.50 6.77 44.81 3.35
1040 1098 0.736053 CAGGTAGACGTCAGAGCTCC 59.264 60.000 19.50 9.97 0.00 4.70
1043 1101 0.374410 GTAGACGTCAGAGCTCCGAC 59.626 60.000 18.47 18.47 0.00 4.79
1048 1106 3.022981 GTCAGAGCTCCGACGAAAG 57.977 57.895 14.11 0.00 0.00 2.62
1049 1107 1.073768 GTCAGAGCTCCGACGAAAGC 61.074 60.000 14.11 12.56 38.84 3.51
1052 1110 2.574399 AGCTCCGACGAAAGCTCC 59.426 61.111 16.07 0.00 45.57 4.70
1053 1111 2.509561 GCTCCGACGAAAGCTCCC 60.510 66.667 13.02 0.00 35.60 4.30
1054 1112 3.007973 GCTCCGACGAAAGCTCCCT 62.008 63.158 13.02 0.00 35.60 4.20
1055 1113 1.139947 CTCCGACGAAAGCTCCCTC 59.860 63.158 0.00 0.00 0.00 4.30
1056 1114 2.184579 CCGACGAAAGCTCCCTCC 59.815 66.667 0.00 0.00 0.00 4.30
1089 1153 2.419297 GGATCATCTCACCGCTTCAGTT 60.419 50.000 0.00 0.00 0.00 3.16
1092 1156 2.094494 TCATCTCACCGCTTCAGTTCTC 60.094 50.000 0.00 0.00 0.00 2.87
1103 1167 3.305064 GCTTCAGTTCTCGTCTCTCAAGT 60.305 47.826 0.00 0.00 0.00 3.16
1131 1195 4.735132 CGCCGTCGCCTTCTTCCA 62.735 66.667 0.00 0.00 0.00 3.53
1132 1196 3.119096 GCCGTCGCCTTCTTCCAC 61.119 66.667 0.00 0.00 0.00 4.02
1133 1197 2.809601 CCGTCGCCTTCTTCCACG 60.810 66.667 0.00 0.00 0.00 4.94
1134 1198 3.479269 CGTCGCCTTCTTCCACGC 61.479 66.667 0.00 0.00 0.00 5.34
1135 1199 3.119096 GTCGCCTTCTTCCACGCC 61.119 66.667 0.00 0.00 0.00 5.68
1136 1200 4.735132 TCGCCTTCTTCCACGCCG 62.735 66.667 0.00 0.00 0.00 6.46
1205 1269 4.722700 CCAGCAGGTGAACCCCGG 62.723 72.222 0.00 0.00 36.42 5.73
1209 1273 3.006728 CAGGTGAACCCCGGCCTA 61.007 66.667 0.00 0.00 36.42 3.93
1210 1274 2.687566 AGGTGAACCCCGGCCTAG 60.688 66.667 0.00 0.00 36.42 3.02
1211 1275 2.686106 GGTGAACCCCGGCCTAGA 60.686 66.667 0.00 0.00 0.00 2.43
1212 1276 2.295602 GGTGAACCCCGGCCTAGAA 61.296 63.158 0.00 0.00 0.00 2.10
1213 1277 1.632965 GGTGAACCCCGGCCTAGAAT 61.633 60.000 0.00 0.00 0.00 2.40
1228 1292 8.319146 CCGGCCTAGAATAGATTAAATTCCTTA 58.681 37.037 0.00 0.00 42.77 2.69
1254 1318 2.995466 TGCTGCTTTTGATTCCTTCG 57.005 45.000 0.00 0.00 0.00 3.79
1283 1347 3.138304 GGAATTCCCTTTGGTTTGTTGC 58.862 45.455 14.03 0.00 0.00 4.17
1289 1353 1.403679 CCTTTGGTTTGTTGCTCGTCA 59.596 47.619 0.00 0.00 0.00 4.35
1319 1383 4.389992 TGCTTCTCATGTCTCGTTTCATTC 59.610 41.667 0.00 0.00 0.00 2.67
1328 1392 6.799926 TGTCTCGTTTCATTCATTGATTGA 57.200 33.333 7.07 7.07 33.34 2.57
1329 1393 7.381766 TGTCTCGTTTCATTCATTGATTGAT 57.618 32.000 11.02 0.00 33.34 2.57
1330 1394 7.819644 TGTCTCGTTTCATTCATTGATTGATT 58.180 30.769 11.02 0.00 33.34 2.57
1331 1395 8.945057 TGTCTCGTTTCATTCATTGATTGATTA 58.055 29.630 11.02 2.34 33.34 1.75
1334 1398 9.390795 CTCGTTTCATTCATTGATTGATTATCC 57.609 33.333 11.02 0.40 33.34 2.59
1358 1426 0.035915 GTCTGAGGAAGGCCAAGGAC 60.036 60.000 5.01 0.00 36.29 3.85
1374 1442 0.108019 GGACCCAAACTGACCTTCGT 59.892 55.000 0.00 0.00 0.00 3.85
1377 1445 2.021457 ACCCAAACTGACCTTCGTTTG 58.979 47.619 7.66 7.66 45.77 2.93
1383 1451 0.875059 CTGACCTTCGTTTGGCTTCC 59.125 55.000 0.00 0.00 0.00 3.46
1463 1531 2.030958 GGCAGGGAACAACGTACGG 61.031 63.158 21.06 5.00 0.00 4.02
1474 1542 5.221048 GGAACAACGTACGGTATACCTACAT 60.221 44.000 21.06 7.21 0.00 2.29
1475 1543 6.017440 GGAACAACGTACGGTATACCTACATA 60.017 42.308 21.06 4.44 0.00 2.29
1476 1544 7.308589 GGAACAACGTACGGTATACCTACATAT 60.309 40.741 21.06 7.07 0.00 1.78
1479 1547 9.884636 ACAACGTACGGTATACCTACATATATA 57.115 33.333 21.06 0.00 0.00 0.86
1486 1554 9.118300 ACGGTATACCTACATATATACTTGCTC 57.882 37.037 19.68 0.00 35.48 4.26
1487 1555 9.339850 CGGTATACCTACATATATACTTGCTCT 57.660 37.037 19.68 0.00 35.48 4.09
1560 1628 0.970427 CCCCCTTCCATTTTGGGTCG 60.970 60.000 0.00 0.00 38.32 4.79
1562 1630 1.463674 CCCTTCCATTTTGGGTCGAG 58.536 55.000 0.00 0.00 38.32 4.04
1583 1651 8.704234 GTCGAGTTTTGACCATAGATATGATTC 58.296 37.037 1.32 0.00 35.75 2.52
1659 1733 9.927081 ATATTTGAAAGAAGGTTCTGATGGTAT 57.073 29.630 0.00 0.00 37.65 2.73
1674 1748 8.667076 TCTGATGGTATCATTTTCACTACATG 57.333 34.615 0.00 0.00 38.85 3.21
1751 1877 5.934625 AGGAGACTAATGTTGTCATGTGTTC 59.065 40.000 0.00 0.00 40.61 3.18
1752 1878 5.700832 GGAGACTAATGTTGTCATGTGTTCA 59.299 40.000 0.00 0.00 36.94 3.18
1767 1893 8.386606 GTCATGTGTTCACATTATTCTCTTCTC 58.613 37.037 14.65 0.00 0.00 2.87
1817 1943 9.693157 GTCAAGTTTTGTCAAAATTCATCAAAG 57.307 29.630 13.65 0.00 27.60 2.77
1822 1948 4.885413 TGTCAAAATTCATCAAAGGGCTG 58.115 39.130 0.00 0.00 0.00 4.85
1838 1964 0.179051 GCTGCTGAATCTCTCCCTGG 60.179 60.000 0.00 0.00 0.00 4.45
1839 1965 0.469070 CTGCTGAATCTCTCCCTGGG 59.531 60.000 6.33 6.33 0.00 4.45
1840 1966 0.043183 TGCTGAATCTCTCCCTGGGA 59.957 55.000 16.13 16.13 0.00 4.37
1841 1967 1.344803 TGCTGAATCTCTCCCTGGGAT 60.345 52.381 17.51 0.00 0.00 3.85
1899 2231 8.432013 TCAGCTAACAAGTTGATCACCATATAT 58.568 33.333 10.54 0.00 0.00 0.86
2007 2345 2.716017 CCTGCCAGTCGGAGAGGAC 61.716 68.421 0.11 0.00 36.95 3.85
2052 2391 4.130118 ACAGTGAGTTCATTCTTGACACC 58.870 43.478 0.00 0.00 30.51 4.16
2174 2524 8.144862 TGAGCCAATAAAATTCACCCTTTATT 57.855 30.769 0.00 0.00 37.92 1.40
2334 2689 0.034337 TCAGCCGGTCCAAAGTACAC 59.966 55.000 1.90 0.00 0.00 2.90
2335 2690 0.250124 CAGCCGGTCCAAAGTACACA 60.250 55.000 1.90 0.00 0.00 3.72
2386 2746 9.502091 TGCATTTAACATATGTTATACTCCCTC 57.498 33.333 25.09 11.83 39.89 4.30
2390 2750 6.742559 AACATATGTTATACTCCCTCCGTT 57.257 37.500 19.51 0.00 36.32 4.44
2393 2753 3.393426 TGTTATACTCCCTCCGTTCCT 57.607 47.619 0.00 0.00 0.00 3.36
2394 2754 4.524802 TGTTATACTCCCTCCGTTCCTA 57.475 45.455 0.00 0.00 0.00 2.94
2396 2756 5.271598 TGTTATACTCCCTCCGTTCCTAAA 58.728 41.667 0.00 0.00 0.00 1.85
2399 2759 7.731688 TGTTATACTCCCTCCGTTCCTAAATAT 59.268 37.037 0.00 0.00 0.00 1.28
2405 2765 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2406 2766 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2408 2768 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2409 2769 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2438 2798 8.771920 AGATTTCAACAAATGACTACATACGA 57.228 30.769 0.00 0.00 37.92 3.43
2439 2799 9.214957 AGATTTCAACAAATGACTACATACGAA 57.785 29.630 0.00 0.00 37.92 3.85
2440 2800 9.478019 GATTTCAACAAATGACTACATACGAAG 57.522 33.333 0.00 0.00 37.92 3.79
2441 2801 6.403333 TCAACAAATGACTACATACGAAGC 57.597 37.500 0.00 0.00 35.50 3.86
2443 2803 6.425417 TCAACAAATGACTACATACGAAGCAA 59.575 34.615 0.00 0.00 35.50 3.91
2445 2805 7.197071 ACAAATGACTACATACGAAGCAAAA 57.803 32.000 0.00 0.00 35.50 2.44
2446 2806 7.816640 ACAAATGACTACATACGAAGCAAAAT 58.183 30.769 0.00 0.00 35.50 1.82
2447 2807 7.750458 ACAAATGACTACATACGAAGCAAAATG 59.250 33.333 0.00 0.00 35.50 2.32
2448 2808 7.609760 AATGACTACATACGAAGCAAAATGA 57.390 32.000 0.00 0.00 35.50 2.57
2449 2809 6.647212 TGACTACATACGAAGCAAAATGAG 57.353 37.500 0.00 0.00 0.00 2.90
2450 2810 6.163476 TGACTACATACGAAGCAAAATGAGT 58.837 36.000 0.00 0.00 0.00 3.41
2451 2811 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
2452 2812 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
2453 2813 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
2454 2814 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
2456 2816 8.213518 ACATACGAAGCAAAATGAGTGAATAT 57.786 30.769 0.00 0.00 0.00 1.28
2457 2817 9.325198 ACATACGAAGCAAAATGAGTGAATATA 57.675 29.630 0.00 0.00 0.00 0.86
2458 2818 9.586150 CATACGAAGCAAAATGAGTGAATATAC 57.414 33.333 0.00 0.00 0.00 1.47
2522 2882 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2523 2883 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2524 2884 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2525 2885 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2549 2909 9.698309 GAGTATTATATATGCTGTGTCACACTT 57.302 33.333 9.90 1.13 35.11 3.16
2553 2913 6.915544 ATATATGCTGTGTCACACTTTGAG 57.084 37.500 9.90 0.00 33.71 3.02
2558 2918 3.499918 GCTGTGTCACACTTTGAGCTTAT 59.500 43.478 9.90 0.00 33.71 1.73
2559 2919 4.690748 GCTGTGTCACACTTTGAGCTTATA 59.309 41.667 9.90 0.00 33.71 0.98
2560 2920 5.179368 GCTGTGTCACACTTTGAGCTTATAA 59.821 40.000 9.90 0.00 33.71 0.98
2561 2921 6.128172 GCTGTGTCACACTTTGAGCTTATAAT 60.128 38.462 9.90 0.00 33.71 1.28
2563 2923 6.934083 TGTGTCACACTTTGAGCTTATAATGA 59.066 34.615 9.90 0.00 33.71 2.57
2564 2924 7.118245 TGTGTCACACTTTGAGCTTATAATGAG 59.882 37.037 9.90 0.00 33.71 2.90
2565 2925 7.331934 GTGTCACACTTTGAGCTTATAATGAGA 59.668 37.037 0.00 0.00 33.71 3.27
2681 3041 3.576118 AGTACCTGATGGATTGGATCGAG 59.424 47.826 0.00 0.00 37.04 4.04
2735 3095 6.687105 CGCAAAAGCTTGGTATAACTGATTAC 59.313 38.462 0.00 0.00 32.76 1.89
2736 3096 7.535139 GCAAAAGCTTGGTATAACTGATTACA 58.465 34.615 0.00 0.00 32.76 2.41
2777 3142 8.345724 ACTGATGAGAGTGCTAAAAATGATTT 57.654 30.769 0.00 0.00 0.00 2.17
3012 3385 2.375173 GTAACTAACCACCCTCCACG 57.625 55.000 0.00 0.00 0.00 4.94
3076 3449 8.292448 GGAATAATTACTGTCTTGTGCCATATG 58.708 37.037 0.00 0.00 0.00 1.78
3080 3453 4.220693 ACTGTCTTGTGCCATATGCTTA 57.779 40.909 0.00 0.00 42.00 3.09
3081 3454 4.588899 ACTGTCTTGTGCCATATGCTTAA 58.411 39.130 0.00 0.00 42.00 1.85
3154 4323 2.305928 AGCACACCACAAACATTAGCA 58.694 42.857 0.00 0.00 0.00 3.49
3164 4333 8.941977 CACCACAAACATTAGCAACTAGTTATA 58.058 33.333 8.04 1.73 0.00 0.98
3464 4651 3.381272 TGGAGCTTTGTTTCAAGAACTGG 59.619 43.478 0.00 0.00 0.00 4.00
3468 4655 4.462483 AGCTTTGTTTCAAGAACTGGTGAA 59.538 37.500 0.00 0.00 31.99 3.18
3657 4858 1.962807 CCAAGGAGGTGTTGATTGCAA 59.037 47.619 0.00 0.00 0.00 4.08
3686 4887 3.651803 TTTGTTCATTTCGGCGGATTT 57.348 38.095 7.21 0.00 0.00 2.17
3832 5034 6.657875 AGGAGTTTCAAGAATCAAGGGATAG 58.342 40.000 0.00 0.00 32.09 2.08
3993 5200 3.565482 CACTGGCACTTGTACATGTTTCT 59.435 43.478 11.46 0.00 0.00 2.52
4003 5210 6.485648 ACTTGTACATGTTTCTTCTACAACCC 59.514 38.462 2.30 0.00 0.00 4.11
4027 5234 4.156008 ACACGGTGAAAGCCATCTATTTTC 59.844 41.667 16.29 0.00 0.00 2.29
4081 5288 3.892588 AGACATAAGTAGGTGGCTAGAGC 59.107 47.826 0.00 0.00 41.14 4.09
4082 5289 3.637229 GACATAAGTAGGTGGCTAGAGCA 59.363 47.826 3.54 0.00 44.36 4.26
4083 5290 3.639094 ACATAAGTAGGTGGCTAGAGCAG 59.361 47.826 3.54 0.00 44.36 4.24
4084 5291 1.490574 AAGTAGGTGGCTAGAGCAGG 58.509 55.000 3.54 0.00 44.36 4.85
4085 5292 0.397816 AGTAGGTGGCTAGAGCAGGG 60.398 60.000 3.54 0.00 44.36 4.45
4086 5293 0.688087 GTAGGTGGCTAGAGCAGGGT 60.688 60.000 3.54 0.00 44.36 4.34
4087 5294 0.042731 TAGGTGGCTAGAGCAGGGTT 59.957 55.000 3.54 0.00 44.36 4.11
4088 5295 0.042731 AGGTGGCTAGAGCAGGGTTA 59.957 55.000 3.54 0.00 44.36 2.85
4089 5296 0.909623 GGTGGCTAGAGCAGGGTTAA 59.090 55.000 3.54 0.00 44.36 2.01
4090 5297 1.280998 GGTGGCTAGAGCAGGGTTAAA 59.719 52.381 3.54 0.00 44.36 1.52
4091 5298 2.290705 GGTGGCTAGAGCAGGGTTAAAA 60.291 50.000 3.54 0.00 44.36 1.52
4092 5299 3.418047 GTGGCTAGAGCAGGGTTAAAAA 58.582 45.455 3.54 0.00 44.36 1.94
4093 5300 4.017126 GTGGCTAGAGCAGGGTTAAAAAT 58.983 43.478 3.54 0.00 44.36 1.82
4094 5301 4.462834 GTGGCTAGAGCAGGGTTAAAAATT 59.537 41.667 3.54 0.00 44.36 1.82
4095 5302 5.047306 GTGGCTAGAGCAGGGTTAAAAATTT 60.047 40.000 3.54 0.00 44.36 1.82
4096 5303 5.185056 TGGCTAGAGCAGGGTTAAAAATTTC 59.815 40.000 3.54 0.00 44.36 2.17
4097 5304 5.185056 GGCTAGAGCAGGGTTAAAAATTTCA 59.815 40.000 3.54 0.00 44.36 2.69
4098 5305 6.295067 GGCTAGAGCAGGGTTAAAAATTTCAA 60.295 38.462 3.54 0.00 44.36 2.69
4099 5306 7.323420 GCTAGAGCAGGGTTAAAAATTTCAAT 58.677 34.615 0.00 0.00 41.59 2.57
4100 5307 7.276438 GCTAGAGCAGGGTTAAAAATTTCAATG 59.724 37.037 0.00 0.00 41.59 2.82
4101 5308 7.301868 AGAGCAGGGTTAAAAATTTCAATGA 57.698 32.000 0.00 0.00 0.00 2.57
4102 5309 7.734942 AGAGCAGGGTTAAAAATTTCAATGAA 58.265 30.769 0.00 0.00 0.00 2.57
4103 5310 8.210265 AGAGCAGGGTTAAAAATTTCAATGAAA 58.790 29.630 11.10 11.10 35.94 2.69
4104 5311 8.922931 AGCAGGGTTAAAAATTTCAATGAAAT 57.077 26.923 14.86 14.86 43.07 2.17
4137 5344 8.472683 AAATTTCCGAAATTTCGCATATTTCA 57.527 26.923 30.49 11.18 45.32 2.69
4138 5345 8.594687 AAATTTCCGAAATTTCGCATATTTCAG 58.405 29.630 30.49 15.95 45.32 3.02
4143 5350 6.136071 CGAAATTTCGCATATTTCAGTAGGG 58.864 40.000 26.01 0.00 44.26 3.53
4144 5351 6.238374 CGAAATTTCGCATATTTCAGTAGGGT 60.238 38.462 26.01 0.00 44.26 4.34
4145 5352 6.619801 AATTTCGCATATTTCAGTAGGGTC 57.380 37.500 0.00 0.00 0.00 4.46
4146 5353 5.353394 TTTCGCATATTTCAGTAGGGTCT 57.647 39.130 0.00 0.00 0.00 3.85
4147 5354 4.322080 TCGCATATTTCAGTAGGGTCTG 57.678 45.455 0.00 0.00 36.85 3.51
4148 5355 3.958147 TCGCATATTTCAGTAGGGTCTGA 59.042 43.478 0.00 0.00 41.85 3.27
4160 5367 9.444600 TTCAGTAGGGTCTGAAATATTAACAAC 57.555 33.333 6.66 0.00 46.88 3.32
4161 5368 8.598916 TCAGTAGGGTCTGAAATATTAACAACA 58.401 33.333 0.00 0.00 40.82 3.33
4162 5369 8.665685 CAGTAGGGTCTGAAATATTAACAACAC 58.334 37.037 0.00 0.00 37.61 3.32
4163 5370 7.827729 AGTAGGGTCTGAAATATTAACAACACC 59.172 37.037 11.18 11.18 0.00 4.16
4164 5371 6.548321 AGGGTCTGAAATATTAACAACACCA 58.452 36.000 16.47 0.00 0.00 4.17
4165 5372 7.007723 AGGGTCTGAAATATTAACAACACCAA 58.992 34.615 16.47 0.00 0.00 3.67
4166 5373 7.507616 AGGGTCTGAAATATTAACAACACCAAA 59.492 33.333 16.47 0.00 0.00 3.28
4167 5374 8.145122 GGGTCTGAAATATTAACAACACCAAAA 58.855 33.333 16.47 0.00 0.00 2.44
4168 5375 9.705290 GGTCTGAAATATTAACAACACCAAAAT 57.295 29.630 13.05 0.00 0.00 1.82
4177 5384 7.517614 TTAACAACACCAAAATAGATGCAGA 57.482 32.000 0.00 0.00 0.00 4.26
4178 5385 6.594788 AACAACACCAAAATAGATGCAGAT 57.405 33.333 0.00 0.00 0.00 2.90
4179 5386 6.594788 ACAACACCAAAATAGATGCAGATT 57.405 33.333 0.00 0.00 0.00 2.40
4180 5387 6.624423 ACAACACCAAAATAGATGCAGATTC 58.376 36.000 0.00 0.00 0.00 2.52
4181 5388 6.209192 ACAACACCAAAATAGATGCAGATTCA 59.791 34.615 0.00 0.00 0.00 2.57
4182 5389 6.839124 ACACCAAAATAGATGCAGATTCAA 57.161 33.333 0.00 0.00 0.00 2.69
4183 5390 7.230849 ACACCAAAATAGATGCAGATTCAAA 57.769 32.000 0.00 0.00 0.00 2.69
4184 5391 7.092716 ACACCAAAATAGATGCAGATTCAAAC 58.907 34.615 0.00 0.00 0.00 2.93
4185 5392 7.092079 CACCAAAATAGATGCAGATTCAAACA 58.908 34.615 0.00 0.00 0.00 2.83
4186 5393 7.599621 CACCAAAATAGATGCAGATTCAAACAA 59.400 33.333 0.00 0.00 0.00 2.83
4187 5394 8.149647 ACCAAAATAGATGCAGATTCAAACAAA 58.850 29.630 0.00 0.00 0.00 2.83
4188 5395 9.158233 CCAAAATAGATGCAGATTCAAACAAAT 57.842 29.630 0.00 0.00 0.00 2.32
4193 5400 9.932207 ATAGATGCAGATTCAAACAAATTTTCA 57.068 25.926 0.00 0.00 0.00 2.69
4194 5401 8.665643 AGATGCAGATTCAAACAAATTTTCAA 57.334 26.923 0.00 0.00 0.00 2.69
4195 5402 9.111613 AGATGCAGATTCAAACAAATTTTCAAA 57.888 25.926 0.00 0.00 0.00 2.69
4196 5403 9.887406 GATGCAGATTCAAACAAATTTTCAAAT 57.113 25.926 0.00 0.00 0.00 2.32
4197 5404 9.672086 ATGCAGATTCAAACAAATTTTCAAATG 57.328 25.926 0.00 0.00 0.00 2.32
4198 5405 8.890718 TGCAGATTCAAACAAATTTTCAAATGA 58.109 25.926 0.00 0.00 0.00 2.57
4199 5406 9.719279 GCAGATTCAAACAAATTTTCAAATGAA 57.281 25.926 0.00 0.00 0.00 2.57
4255 5462 8.693542 AGCTAAATTTGAAATCAGAAAATCCG 57.306 30.769 0.00 0.00 0.00 4.18
4256 5463 8.522830 AGCTAAATTTGAAATCAGAAAATCCGA 58.477 29.630 0.00 0.00 0.00 4.55
4257 5464 9.139174 GCTAAATTTGAAATCAGAAAATCCGAA 57.861 29.630 0.00 0.00 0.00 4.30
4267 5474 8.856490 AATCAGAAAATCCGAAATAATTTCCG 57.144 30.769 0.00 0.00 36.30 4.30
4268 5475 7.618502 TCAGAAAATCCGAAATAATTTCCGA 57.381 32.000 0.00 0.00 36.30 4.55
4269 5476 8.046294 TCAGAAAATCCGAAATAATTTCCGAA 57.954 30.769 0.00 0.00 36.30 4.30
4270 5477 8.181573 TCAGAAAATCCGAAATAATTTCCGAAG 58.818 33.333 0.00 0.00 36.30 3.79
4271 5478 6.972901 AGAAAATCCGAAATAATTTCCGAAGC 59.027 34.615 0.00 0.00 36.30 3.86
4272 5479 5.828299 AATCCGAAATAATTTCCGAAGCA 57.172 34.783 0.00 0.00 36.30 3.91
4273 5480 6.391227 AATCCGAAATAATTTCCGAAGCAT 57.609 33.333 0.00 0.00 36.30 3.79
4274 5481 5.168526 TCCGAAATAATTTCCGAAGCATG 57.831 39.130 0.00 0.00 36.30 4.06
4275 5482 4.638421 TCCGAAATAATTTCCGAAGCATGT 59.362 37.500 0.00 0.00 36.30 3.21
4276 5483 4.734854 CCGAAATAATTTCCGAAGCATGTG 59.265 41.667 0.00 0.00 36.30 3.21
4277 5484 5.448496 CCGAAATAATTTCCGAAGCATGTGA 60.448 40.000 0.00 0.00 36.30 3.58
4278 5485 6.027131 CGAAATAATTTCCGAAGCATGTGAA 58.973 36.000 0.00 0.00 36.30 3.18
4279 5486 6.526325 CGAAATAATTTCCGAAGCATGTGAAA 59.474 34.615 0.00 0.00 36.30 2.69
4280 5487 7.220683 CGAAATAATTTCCGAAGCATGTGAAAT 59.779 33.333 0.00 0.00 36.30 2.17
4281 5488 8.776376 AAATAATTTCCGAAGCATGTGAAATT 57.224 26.923 16.13 16.13 0.00 1.82
4282 5489 8.776376 AATAATTTCCGAAGCATGTGAAATTT 57.224 26.923 16.72 0.00 0.00 1.82
4283 5490 6.710692 AATTTCCGAAGCATGTGAAATTTC 57.289 33.333 11.41 11.41 0.00 2.17
4284 5491 3.848272 TCCGAAGCATGTGAAATTTCC 57.152 42.857 15.48 7.59 0.00 3.13
4285 5492 2.161410 TCCGAAGCATGTGAAATTTCCG 59.839 45.455 15.48 8.64 0.00 4.30
4286 5493 2.161410 CCGAAGCATGTGAAATTTCCGA 59.839 45.455 15.48 2.37 0.00 4.55
4287 5494 3.365868 CCGAAGCATGTGAAATTTCCGAA 60.366 43.478 15.48 1.67 0.00 4.30
4288 5495 4.225984 CGAAGCATGTGAAATTTCCGAAA 58.774 39.130 15.48 0.00 0.00 3.46
4289 5496 4.858692 CGAAGCATGTGAAATTTCCGAAAT 59.141 37.500 15.48 0.17 0.00 2.17
4290 5497 5.345741 CGAAGCATGTGAAATTTCCGAAATT 59.654 36.000 15.48 12.47 42.62 1.82
4308 5515 3.559238 ATTTCGCATATTTCGATGGGC 57.441 42.857 0.00 0.00 39.10 5.36
4309 5516 2.254546 TTCGCATATTTCGATGGGCT 57.745 45.000 0.00 0.00 39.10 5.19
4310 5517 1.795768 TCGCATATTTCGATGGGCTC 58.204 50.000 0.00 0.00 39.10 4.70
4311 5518 1.344438 TCGCATATTTCGATGGGCTCT 59.656 47.619 0.00 0.00 39.10 4.09
4312 5519 1.462283 CGCATATTTCGATGGGCTCTG 59.538 52.381 0.00 0.00 33.60 3.35
4313 5520 2.771089 GCATATTTCGATGGGCTCTGA 58.229 47.619 0.00 0.00 0.00 3.27
4314 5521 3.141398 GCATATTTCGATGGGCTCTGAA 58.859 45.455 0.00 0.00 0.00 3.02
4315 5522 3.565482 GCATATTTCGATGGGCTCTGAAA 59.435 43.478 2.49 2.49 33.84 2.69
4316 5523 4.217118 GCATATTTCGATGGGCTCTGAAAT 59.783 41.667 13.80 13.80 38.91 2.17
4317 5524 5.278660 GCATATTTCGATGGGCTCTGAAATT 60.279 40.000 14.32 4.11 37.78 1.82
4318 5525 6.072508 GCATATTTCGATGGGCTCTGAAATTA 60.073 38.462 14.32 5.06 37.78 1.40
4319 5526 7.362401 GCATATTTCGATGGGCTCTGAAATTAT 60.362 37.037 14.32 6.54 37.78 1.28
4320 5527 6.966534 ATTTCGATGGGCTCTGAAATTATT 57.033 33.333 6.29 0.00 35.50 1.40
4321 5528 6.773976 TTTCGATGGGCTCTGAAATTATTT 57.226 33.333 0.00 0.00 0.00 1.40
4322 5529 6.773976 TTCGATGGGCTCTGAAATTATTTT 57.226 33.333 0.00 0.00 0.00 1.82
4323 5530 6.135290 TCGATGGGCTCTGAAATTATTTTG 57.865 37.500 0.00 0.00 0.00 2.44
4324 5531 5.652014 TCGATGGGCTCTGAAATTATTTTGT 59.348 36.000 0.00 0.00 0.00 2.83
4325 5532 6.152661 TCGATGGGCTCTGAAATTATTTTGTT 59.847 34.615 0.00 0.00 0.00 2.83
4326 5533 6.813152 CGATGGGCTCTGAAATTATTTTGTTT 59.187 34.615 0.00 0.00 0.00 2.83
4327 5534 7.331687 CGATGGGCTCTGAAATTATTTTGTTTT 59.668 33.333 0.00 0.00 0.00 2.43
4328 5535 7.961325 TGGGCTCTGAAATTATTTTGTTTTC 57.039 32.000 0.00 0.00 0.00 2.29
4329 5536 6.644592 TGGGCTCTGAAATTATTTTGTTTTCG 59.355 34.615 0.00 0.00 33.15 3.46
4330 5537 6.866248 GGGCTCTGAAATTATTTTGTTTTCGA 59.134 34.615 0.00 0.00 33.15 3.71
4331 5538 7.383843 GGGCTCTGAAATTATTTTGTTTTCGAA 59.616 33.333 0.00 0.00 33.15 3.71
4332 5539 8.760569 GGCTCTGAAATTATTTTGTTTTCGAAA 58.239 29.630 6.47 6.47 37.55 3.46
4394 5601 4.770795 TCCTCTTTGGATAGCAGTTTAGC 58.229 43.478 0.00 0.00 40.56 3.09
4395 5602 3.879892 CCTCTTTGGATAGCAGTTTAGCC 59.120 47.826 0.00 0.00 38.35 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.841422 AGTAGCATGGCCATCATTAGATC 58.159 43.478 17.61 1.41 32.92 2.75
62 63 8.329203 ACGAGAGAGATTTTAGCTCAAAAATT 57.671 30.769 8.28 0.81 38.77 1.82
68 69 4.274147 AGGACGAGAGAGATTTTAGCTCA 58.726 43.478 0.00 0.00 34.85 4.26
87 90 7.911651 GGATATATCCAATGAGTGAAAGAGGA 58.088 38.462 24.41 0.00 46.38 3.71
140 145 1.333435 CCGTTACGCACCAACAGTTTC 60.333 52.381 0.00 0.00 0.00 2.78
146 151 0.441145 GATCACCGTTACGCACCAAC 59.559 55.000 0.00 0.00 0.00 3.77
176 181 2.940994 TTGGGACCTGTTTTCATCGA 57.059 45.000 0.00 0.00 0.00 3.59
191 196 3.278574 TCCGCACTTTCTAATGATTGGG 58.721 45.455 0.00 0.00 0.00 4.12
201 206 3.618690 ATCTTTAGCTCCGCACTTTCT 57.381 42.857 0.00 0.00 0.00 2.52
203 208 5.246307 ACTTAATCTTTAGCTCCGCACTTT 58.754 37.500 0.00 0.00 0.00 2.66
210 215 7.542824 CGCCTCTTATACTTAATCTTTAGCTCC 59.457 40.741 0.00 0.00 0.00 4.70
216 221 7.598759 TCCTCGCCTCTTATACTTAATCTTT 57.401 36.000 0.00 0.00 0.00 2.52
231 236 0.250209 ATGTGCATCATCCTCGCCTC 60.250 55.000 0.00 0.00 29.76 4.70
344 349 4.194640 CAACATAGTCATGTCAAGGAGGG 58.805 47.826 0.00 0.00 44.83 4.30
368 373 3.444034 TGTGTAGCATCTGTCTGGAGTAC 59.556 47.826 0.00 0.00 0.00 2.73
378 413 1.260206 GTCGTCGTGTGTAGCATCTG 58.740 55.000 0.00 0.00 0.00 2.90
384 419 0.454620 GAGCCTGTCGTCGTGTGTAG 60.455 60.000 0.00 0.00 0.00 2.74
387 422 2.430921 GGAGCCTGTCGTCGTGTG 60.431 66.667 0.00 0.00 0.00 3.82
392 427 2.179517 CGTCTGGAGCCTGTCGTC 59.820 66.667 5.25 0.00 0.00 4.20
399 434 1.446272 CCGAAAGTCGTCTGGAGCC 60.446 63.158 0.00 0.00 38.40 4.70
417 453 1.930100 CTTGATGAGATGCGCCGTC 59.070 57.895 4.18 2.84 0.00 4.79
421 457 2.098842 GACGGCTTGATGAGATGCGC 62.099 60.000 0.00 0.00 0.00 6.09
447 483 1.183030 AGGTACGGTGTGCAGCTGTA 61.183 55.000 16.64 8.31 0.00 2.74
450 486 2.343758 CAGGTACGGTGTGCAGCT 59.656 61.111 0.00 0.00 0.00 4.24
453 489 1.687297 TTGTCCAGGTACGGTGTGCA 61.687 55.000 0.00 0.00 0.00 4.57
454 490 1.070105 TTGTCCAGGTACGGTGTGC 59.930 57.895 0.00 0.00 0.00 4.57
455 491 0.105224 TGTTGTCCAGGTACGGTGTG 59.895 55.000 0.00 0.00 0.00 3.82
457 493 0.601841 GGTGTTGTCCAGGTACGGTG 60.602 60.000 0.00 0.00 0.00 4.94
458 494 1.750297 GGTGTTGTCCAGGTACGGT 59.250 57.895 0.00 0.00 0.00 4.83
459 495 1.373748 CGGTGTTGTCCAGGTACGG 60.374 63.158 0.00 0.00 0.00 4.02
460 496 0.665369 GACGGTGTTGTCCAGGTACG 60.665 60.000 0.00 0.00 32.61 3.67
461 497 3.206090 GACGGTGTTGTCCAGGTAC 57.794 57.895 0.00 0.00 32.61 3.34
515 551 8.690840 CGGATTTTAAGATTTCGGAAATAATGC 58.309 33.333 15.50 14.09 0.00 3.56
553 589 6.124088 ACCTCACTGAAATATGCGAAATTC 57.876 37.500 0.00 0.00 0.00 2.17
581 617 4.582701 TGATCTCGGCAACAAAACAATT 57.417 36.364 0.00 0.00 0.00 2.32
588 624 2.955660 AGGTTTTTGATCTCGGCAACAA 59.044 40.909 0.00 0.00 0.00 2.83
593 629 2.814336 AGTCAAGGTTTTTGATCTCGGC 59.186 45.455 0.00 0.00 0.00 5.54
623 659 3.565902 AGTCTTAGCCACTTTCTGTTTGC 59.434 43.478 0.00 0.00 0.00 3.68
624 660 5.757850 AAGTCTTAGCCACTTTCTGTTTG 57.242 39.130 0.00 0.00 29.29 2.93
625 661 6.354130 TGTAAGTCTTAGCCACTTTCTGTTT 58.646 36.000 0.00 0.00 35.63 2.83
642 678 8.699283 AGGTATTACGAGTGAATTTGTAAGTC 57.301 34.615 0.00 0.00 32.07 3.01
648 684 6.479001 CACCCTAGGTATTACGAGTGAATTTG 59.521 42.308 8.29 0.00 32.11 2.32
649 685 6.155737 ACACCCTAGGTATTACGAGTGAATTT 59.844 38.462 14.94 0.00 32.11 1.82
659 695 3.865446 ACGCAAACACCCTAGGTATTAC 58.135 45.455 8.29 0.00 32.11 1.89
699 735 8.428186 ACGATTGCGATACCTTTTCTTTATTA 57.572 30.769 0.00 0.00 41.64 0.98
702 738 6.020440 CGTACGATTGCGATACCTTTTCTTTA 60.020 38.462 10.44 0.00 41.64 1.85
706 742 3.060740 CCGTACGATTGCGATACCTTTTC 60.061 47.826 18.76 0.00 41.64 2.29
738 778 5.529060 CAGCCTTTCCATACAAGTAATCTCC 59.471 44.000 0.00 0.00 0.00 3.71
834 874 1.228398 TGCCGCCTTTGATGGTTCA 60.228 52.632 0.00 0.00 0.00 3.18
835 875 1.212751 GTGCCGCCTTTGATGGTTC 59.787 57.895 0.00 0.00 0.00 3.62
870 910 1.007336 CGTCTGTCCCGTGCTGTTAC 61.007 60.000 0.00 0.00 0.00 2.50
877 917 2.048503 GTTCCCGTCTGTCCCGTG 60.049 66.667 0.00 0.00 0.00 4.94
935 991 1.963338 GGCTGGCGGTGATAGATGC 60.963 63.158 0.00 0.00 0.00 3.91
966 1022 2.221169 CGAGAGAGAGATGGAGAGGTG 58.779 57.143 0.00 0.00 0.00 4.00
968 1024 1.896220 CCGAGAGAGAGATGGAGAGG 58.104 60.000 0.00 0.00 0.00 3.69
970 1026 0.533978 CGCCGAGAGAGAGATGGAGA 60.534 60.000 0.00 0.00 0.00 3.71
972 1028 0.468648 TACGCCGAGAGAGAGATGGA 59.531 55.000 0.00 0.00 0.00 3.41
973 1029 0.589223 GTACGCCGAGAGAGAGATGG 59.411 60.000 0.00 0.00 0.00 3.51
1008 1064 6.576662 ACGTCTACCTGAAGTCCATATATG 57.423 41.667 5.68 5.68 31.99 1.78
1017 1073 1.813786 GCTCTGACGTCTACCTGAAGT 59.186 52.381 17.92 0.00 39.98 3.01
1018 1074 2.088423 AGCTCTGACGTCTACCTGAAG 58.912 52.381 17.92 3.70 0.00 3.02
1036 1094 2.509561 GGGAGCTTTCGTCGGAGC 60.510 66.667 11.90 11.90 39.17 4.70
1040 1098 2.184579 GGGAGGGAGCTTTCGTCG 59.815 66.667 0.00 0.00 0.00 5.12
1043 1101 2.736826 GGGAGGGAGGGAGCTTTCG 61.737 68.421 0.00 0.00 0.00 3.46
1044 1102 1.307430 AGGGAGGGAGGGAGCTTTC 60.307 63.158 0.00 0.00 0.00 2.62
1045 1103 1.307430 GAGGGAGGGAGGGAGCTTT 60.307 63.158 0.00 0.00 0.00 3.51
1046 1104 2.370633 GAGGGAGGGAGGGAGCTT 59.629 66.667 0.00 0.00 0.00 3.74
1047 1105 3.773154 GGAGGGAGGGAGGGAGCT 61.773 72.222 0.00 0.00 0.00 4.09
1048 1106 4.890306 GGGAGGGAGGGAGGGAGC 62.890 77.778 0.00 0.00 0.00 4.70
1049 1107 3.039526 AGGGAGGGAGGGAGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
1050 1108 3.036959 GAGGGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
1051 1109 4.548513 CGAGGGAGGGAGGGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
1052 1110 4.548513 CCGAGGGAGGGAGGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
1053 1111 2.723464 GATCCGAGGGAGGGAGGGAG 62.723 70.000 0.00 0.00 36.91 4.30
1054 1112 2.704198 ATCCGAGGGAGGGAGGGA 60.704 66.667 0.00 0.00 36.91 4.20
1055 1113 2.203714 GATCCGAGGGAGGGAGGG 60.204 72.222 0.00 0.00 36.91 4.30
1056 1114 0.902516 GATGATCCGAGGGAGGGAGG 60.903 65.000 0.00 0.00 36.91 4.30
1089 1153 1.169577 GGAGCACTTGAGAGACGAGA 58.830 55.000 0.00 0.00 34.31 4.04
1092 1156 4.467232 CGGAGCACTTGAGAGACG 57.533 61.111 0.00 0.00 0.00 4.18
1118 1182 3.119096 GGCGTGGAAGAAGGCGAC 61.119 66.667 0.00 0.00 0.00 5.19
1197 1261 1.713297 TCTATTCTAGGCCGGGGTTC 58.287 55.000 2.18 0.00 0.00 3.62
1200 1264 4.903045 TTTAATCTATTCTAGGCCGGGG 57.097 45.455 2.18 0.00 0.00 5.73
1228 1292 4.159135 AGGAATCAAAAGCAGCAATCGAAT 59.841 37.500 0.00 0.00 0.00 3.34
1231 1295 3.498927 AGGAATCAAAAGCAGCAATCG 57.501 42.857 0.00 0.00 0.00 3.34
1254 1318 2.352715 CCAAAGGGAATTCCAAGCGAAC 60.353 50.000 25.67 6.68 38.24 3.95
1283 1347 3.842820 TGAGAAGCAAGAAGATGACGAG 58.157 45.455 0.00 0.00 0.00 4.18
1289 1353 4.081752 ACGAGACATGAGAAGCAAGAAGAT 60.082 41.667 0.00 0.00 0.00 2.40
1319 1383 8.217131 TCAGACAAGTGGATAATCAATCAATG 57.783 34.615 0.00 0.00 36.20 2.82
1328 1392 4.384647 GCCTTCCTCAGACAAGTGGATAAT 60.385 45.833 0.00 0.00 31.81 1.28
1329 1393 3.055094 GCCTTCCTCAGACAAGTGGATAA 60.055 47.826 0.00 0.00 31.81 1.75
1330 1394 2.501723 GCCTTCCTCAGACAAGTGGATA 59.498 50.000 0.00 0.00 31.81 2.59
1331 1395 1.280421 GCCTTCCTCAGACAAGTGGAT 59.720 52.381 0.00 0.00 31.81 3.41
1334 1398 0.397941 TGGCCTTCCTCAGACAAGTG 59.602 55.000 3.32 0.00 0.00 3.16
1374 1442 5.248640 TCAAAACAACAAATGGAAGCCAAA 58.751 33.333 0.00 0.00 36.95 3.28
1377 1445 5.277925 CCAATCAAAACAACAAATGGAAGCC 60.278 40.000 0.00 0.00 0.00 4.35
1383 1451 4.608890 GCGAGCCAATCAAAACAACAAATG 60.609 41.667 0.00 0.00 0.00 2.32
1497 1565 9.220906 TGGAACAAAGGAAGTATATATGTAGGT 57.779 33.333 0.00 0.00 31.92 3.08
1560 1628 8.704234 GTCGAATCATATCTATGGTCAAAACTC 58.296 37.037 0.00 0.00 34.50 3.01
1562 1630 8.594881 AGTCGAATCATATCTATGGTCAAAAC 57.405 34.615 0.00 0.00 34.50 2.43
1689 1763 9.959749 TCAAAGTTTGACCATAAATTTGAGTAC 57.040 29.630 14.35 0.00 34.08 2.73
1789 1915 9.434420 TTGATGAATTTTGACAAAACTTGACTT 57.566 25.926 15.36 5.20 32.37 3.01
1790 1916 9.434420 TTTGATGAATTTTGACAAAACTTGACT 57.566 25.926 15.36 0.00 32.37 3.41
1817 1943 1.148048 GGGAGAGATTCAGCAGCCC 59.852 63.158 0.00 0.00 0.00 5.19
1822 1948 1.072015 CATCCCAGGGAGAGATTCAGC 59.928 57.143 15.44 0.00 34.05 4.26
1841 1967 9.383519 GTTTTTGGTAGAGTTAGATGATGATCA 57.616 33.333 0.00 0.00 0.00 2.92
1899 2231 6.982141 CCTGCGTAGTACAGTCCAAATATTTA 59.018 38.462 0.00 0.00 33.09 1.40
2127 2477 7.859875 GCTCAAAATAAAGCATCAAGAGGATAC 59.140 37.037 0.00 0.00 38.42 2.24
2334 2689 2.029649 CAGGTGCCAAGATTTGAAGGTG 60.030 50.000 0.00 0.00 0.00 4.00
2335 2690 2.242043 CAGGTGCCAAGATTTGAAGGT 58.758 47.619 0.00 0.00 0.00 3.50
2364 2723 8.253867 ACGGAGGGAGTATAACATATGTTAAA 57.746 34.615 27.45 12.26 42.93 1.52
2412 2772 8.869897 TCGTATGTAGTCATTTGTTGAAATCTC 58.130 33.333 0.00 0.00 35.70 2.75
2417 2777 6.425417 TGCTTCGTATGTAGTCATTTGTTGAA 59.575 34.615 0.00 0.00 35.70 2.69
2419 2779 6.164408 TGCTTCGTATGTAGTCATTTGTTG 57.836 37.500 0.00 0.00 35.70 3.33
2420 2780 6.795098 TTGCTTCGTATGTAGTCATTTGTT 57.205 33.333 0.00 0.00 35.70 2.83
2421 2781 6.795098 TTTGCTTCGTATGTAGTCATTTGT 57.205 33.333 0.00 0.00 35.70 2.83
2422 2782 7.962373 TCATTTTGCTTCGTATGTAGTCATTTG 59.038 33.333 0.00 0.00 35.70 2.32
2424 2784 7.334421 ACTCATTTTGCTTCGTATGTAGTCATT 59.666 33.333 0.00 0.00 35.70 2.57
2426 2786 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
2428 2788 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
2429 2789 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
2431 2791 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
2432 2792 9.586150 GTATATTCACTCATTTTGCTTCGTATG 57.414 33.333 0.00 0.00 0.00 2.39
2433 2793 9.325198 TGTATATTCACTCATTTTGCTTCGTAT 57.675 29.630 0.00 0.00 0.00 3.06
2434 2794 8.600625 GTGTATATTCACTCATTTTGCTTCGTA 58.399 33.333 5.30 0.00 35.68 3.43
2436 2796 7.688372 AGTGTATATTCACTCATTTTGCTTCG 58.312 34.615 9.03 0.00 44.07 3.79
2496 2856 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2497 2857 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2498 2858 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2499 2859 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2500 2860 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2501 2861 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2502 2862 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2503 2863 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2504 2864 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2505 2865 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2506 2866 8.912614 ATAATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2508 2868 8.912614 ATATAATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
2510 2870 9.417561 CATATATAATACTCCCTCCGTTCCTAA 57.582 37.037 0.00 0.00 0.00 2.69
2511 2871 7.504911 GCATATATAATACTCCCTCCGTTCCTA 59.495 40.741 0.00 0.00 0.00 2.94
2512 2872 6.324254 GCATATATAATACTCCCTCCGTTCCT 59.676 42.308 0.00 0.00 0.00 3.36
2513 2873 6.324254 AGCATATATAATACTCCCTCCGTTCC 59.676 42.308 0.00 0.00 0.00 3.62
2514 2874 7.147880 ACAGCATATATAATACTCCCTCCGTTC 60.148 40.741 0.00 0.00 0.00 3.95
2515 2875 6.668283 ACAGCATATATAATACTCCCTCCGTT 59.332 38.462 0.00 0.00 0.00 4.44
2516 2876 6.096987 CACAGCATATATAATACTCCCTCCGT 59.903 42.308 0.00 0.00 0.00 4.69
2517 2877 6.096987 ACACAGCATATATAATACTCCCTCCG 59.903 42.308 0.00 0.00 0.00 4.63
2518 2878 7.124298 TGACACAGCATATATAATACTCCCTCC 59.876 40.741 0.00 0.00 0.00 4.30
2519 2879 7.976734 GTGACACAGCATATATAATACTCCCTC 59.023 40.741 0.00 0.00 0.00 4.30
2520 2880 7.454694 TGTGACACAGCATATATAATACTCCCT 59.545 37.037 3.56 0.00 0.00 4.20
2521 2881 7.545965 GTGTGACACAGCATATATAATACTCCC 59.454 40.741 11.43 0.00 34.08 4.30
2522 2882 8.307483 AGTGTGACACAGCATATATAATACTCC 58.693 37.037 18.95 0.00 36.74 3.85
2523 2883 9.698309 AAGTGTGACACAGCATATATAATACTC 57.302 33.333 18.95 0.00 36.74 2.59
2681 3041 0.179034 ATTCTTCATCGAGCTGGGCC 60.179 55.000 0.00 0.00 0.00 5.80
3012 3385 4.291540 TGCAACTTTGTGTCATGAAGTC 57.708 40.909 0.00 0.00 32.79 3.01
3076 3449 6.374565 ATGATTGATCACAGCTTCTTAAGC 57.625 37.500 0.00 3.43 46.56 3.09
3080 3453 6.320418 TGCATAATGATTGATCACAGCTTCTT 59.680 34.615 0.00 0.00 40.03 2.52
3081 3454 5.826208 TGCATAATGATTGATCACAGCTTCT 59.174 36.000 0.00 0.00 40.03 2.85
3154 4323 8.190784 GCAATCAGCAAACCATTATAACTAGTT 58.809 33.333 13.68 13.68 44.79 2.24
3479 4666 8.538409 AAAAAGCAACAAAATATGATGTCTCC 57.462 30.769 0.00 0.00 34.50 3.71
3657 4858 4.057432 CCGAAATGAACAAATTGCCAAGT 58.943 39.130 0.00 0.00 0.00 3.16
3659 4860 2.805099 GCCGAAATGAACAAATTGCCAA 59.195 40.909 0.00 0.00 0.00 4.52
3686 4887 4.609301 AGAAATTCCCCGGATCAAATGAA 58.391 39.130 0.73 0.00 0.00 2.57
3867 5069 7.681939 TGCCTCTTATTAAGTTTGAAACGAT 57.318 32.000 1.97 1.77 36.23 3.73
3926 5130 5.061920 TGTAAAGCGAAAAAGTTTGGTGT 57.938 34.783 0.00 0.00 0.00 4.16
4003 5210 2.093306 TAGATGGCTTTCACCGTGTG 57.907 50.000 0.00 0.00 34.45 3.82
4027 5234 1.821136 GATCCCCCAAAAAGTGCTCAG 59.179 52.381 0.00 0.00 0.00 3.35
4120 5327 7.012421 AGACCCTACTGAAATATGCGAAATTTC 59.988 37.037 8.20 8.20 41.60 2.17
4121 5328 6.828785 AGACCCTACTGAAATATGCGAAATTT 59.171 34.615 0.00 0.00 0.00 1.82
4122 5329 6.260936 CAGACCCTACTGAAATATGCGAAATT 59.739 38.462 0.00 0.00 39.94 1.82
4123 5330 5.760253 CAGACCCTACTGAAATATGCGAAAT 59.240 40.000 0.00 0.00 39.94 2.17
4124 5331 5.105106 TCAGACCCTACTGAAATATGCGAAA 60.105 40.000 0.00 0.00 42.79 3.46
4125 5332 4.404394 TCAGACCCTACTGAAATATGCGAA 59.596 41.667 0.00 0.00 42.79 4.70
4126 5333 3.958147 TCAGACCCTACTGAAATATGCGA 59.042 43.478 0.00 0.00 42.79 5.10
4127 5334 4.322080 TCAGACCCTACTGAAATATGCG 57.678 45.455 0.00 0.00 42.79 4.73
4135 5342 8.598916 TGTTGTTAATATTTCAGACCCTACTGA 58.401 33.333 0.00 0.00 43.83 3.41
4136 5343 8.665685 GTGTTGTTAATATTTCAGACCCTACTG 58.334 37.037 0.00 0.00 39.02 2.74
4137 5344 7.827729 GGTGTTGTTAATATTTCAGACCCTACT 59.172 37.037 0.00 0.00 0.00 2.57
4138 5345 7.608761 TGGTGTTGTTAATATTTCAGACCCTAC 59.391 37.037 0.00 0.00 0.00 3.18
4139 5346 7.691213 TGGTGTTGTTAATATTTCAGACCCTA 58.309 34.615 0.00 0.00 0.00 3.53
4140 5347 6.548321 TGGTGTTGTTAATATTTCAGACCCT 58.452 36.000 0.00 0.00 0.00 4.34
4141 5348 6.827586 TGGTGTTGTTAATATTTCAGACCC 57.172 37.500 0.00 0.00 0.00 4.46
4142 5349 9.705290 ATTTTGGTGTTGTTAATATTTCAGACC 57.295 29.630 0.00 5.32 0.00 3.85
4151 5358 9.237187 TCTGCATCTATTTTGGTGTTGTTAATA 57.763 29.630 0.00 0.00 0.00 0.98
4152 5359 8.121305 TCTGCATCTATTTTGGTGTTGTTAAT 57.879 30.769 0.00 0.00 0.00 1.40
4153 5360 7.517614 TCTGCATCTATTTTGGTGTTGTTAA 57.482 32.000 0.00 0.00 0.00 2.01
4154 5361 7.701539 ATCTGCATCTATTTTGGTGTTGTTA 57.298 32.000 0.00 0.00 0.00 2.41
4155 5362 6.594788 ATCTGCATCTATTTTGGTGTTGTT 57.405 33.333 0.00 0.00 0.00 2.83
4156 5363 6.209192 TGAATCTGCATCTATTTTGGTGTTGT 59.791 34.615 0.00 0.00 0.00 3.32
4157 5364 6.623486 TGAATCTGCATCTATTTTGGTGTTG 58.377 36.000 0.00 0.00 0.00 3.33
4158 5365 6.839124 TGAATCTGCATCTATTTTGGTGTT 57.161 33.333 0.00 0.00 0.00 3.32
4159 5366 6.839124 TTGAATCTGCATCTATTTTGGTGT 57.161 33.333 0.00 0.00 0.00 4.16
4160 5367 7.092079 TGTTTGAATCTGCATCTATTTTGGTG 58.908 34.615 0.00 0.00 0.00 4.17
4161 5368 7.230849 TGTTTGAATCTGCATCTATTTTGGT 57.769 32.000 0.00 0.00 0.00 3.67
4162 5369 8.537049 TTTGTTTGAATCTGCATCTATTTTGG 57.463 30.769 0.00 0.00 0.00 3.28
4167 5374 9.932207 TGAAAATTTGTTTGAATCTGCATCTAT 57.068 25.926 0.00 0.00 0.00 1.98
4168 5375 9.761504 TTGAAAATTTGTTTGAATCTGCATCTA 57.238 25.926 0.00 0.00 0.00 1.98
4169 5376 8.665643 TTGAAAATTTGTTTGAATCTGCATCT 57.334 26.923 0.00 0.00 0.00 2.90
4170 5377 9.887406 ATTTGAAAATTTGTTTGAATCTGCATC 57.113 25.926 0.00 0.00 0.00 3.91
4171 5378 9.672086 CATTTGAAAATTTGTTTGAATCTGCAT 57.328 25.926 0.00 0.00 0.00 3.96
4172 5379 8.890718 TCATTTGAAAATTTGTTTGAATCTGCA 58.109 25.926 0.00 0.00 0.00 4.41
4173 5380 9.719279 TTCATTTGAAAATTTGTTTGAATCTGC 57.281 25.926 0.00 0.00 0.00 4.26
4229 5436 9.143631 CGGATTTTCTGATTTCAAATTTAGCTT 57.856 29.630 0.00 0.00 0.00 3.74
4230 5437 8.522830 TCGGATTTTCTGATTTCAAATTTAGCT 58.477 29.630 0.00 0.00 0.00 3.32
4231 5438 8.687824 TCGGATTTTCTGATTTCAAATTTAGC 57.312 30.769 0.00 0.00 0.00 3.09
4241 5448 9.301153 CGGAAATTATTTCGGATTTTCTGATTT 57.699 29.630 16.84 0.00 41.03 2.17
4242 5449 8.682710 TCGGAAATTATTTCGGATTTTCTGATT 58.317 29.630 19.35 0.00 41.96 2.57
4243 5450 8.220755 TCGGAAATTATTTCGGATTTTCTGAT 57.779 30.769 19.35 0.00 41.96 2.90
4244 5451 7.618502 TCGGAAATTATTTCGGATTTTCTGA 57.381 32.000 19.35 4.20 41.96 3.27
4245 5452 7.044052 GCTTCGGAAATTATTTCGGATTTTCTG 60.044 37.037 22.35 12.68 44.80 3.02
4246 5453 6.972901 GCTTCGGAAATTATTTCGGATTTTCT 59.027 34.615 22.35 0.00 44.80 2.52
4247 5454 6.750039 TGCTTCGGAAATTATTTCGGATTTTC 59.250 34.615 22.35 14.36 44.80 2.29
4248 5455 6.626302 TGCTTCGGAAATTATTTCGGATTTT 58.374 32.000 22.35 0.00 44.80 1.82
4249 5456 6.202516 TGCTTCGGAAATTATTTCGGATTT 57.797 33.333 22.35 0.00 44.80 2.17
4250 5457 5.828299 TGCTTCGGAAATTATTTCGGATT 57.172 34.783 22.35 0.00 44.80 3.01
4251 5458 5.299279 ACATGCTTCGGAAATTATTTCGGAT 59.701 36.000 22.35 9.83 44.80 4.18
4252 5459 4.638421 ACATGCTTCGGAAATTATTTCGGA 59.362 37.500 19.35 19.35 44.11 4.55
4253 5460 4.734854 CACATGCTTCGGAAATTATTTCGG 59.265 41.667 16.00 16.00 40.57 4.30
4254 5461 5.568482 TCACATGCTTCGGAAATTATTTCG 58.432 37.500 11.01 7.23 40.57 3.46
4255 5462 7.810766 TTTCACATGCTTCGGAAATTATTTC 57.189 32.000 9.03 9.03 38.94 2.17
4256 5463 8.776376 AATTTCACATGCTTCGGAAATTATTT 57.224 26.923 15.15 0.00 43.99 1.40
4257 5464 8.776376 AAATTTCACATGCTTCGGAAATTATT 57.224 26.923 16.21 6.11 44.64 1.40
4258 5465 7.492344 GGAAATTTCACATGCTTCGGAAATTAT 59.508 33.333 19.49 10.50 44.64 1.28
4259 5466 6.811170 GGAAATTTCACATGCTTCGGAAATTA 59.189 34.615 19.49 0.00 44.64 1.40
4260 5467 5.639082 GGAAATTTCACATGCTTCGGAAATT 59.361 36.000 19.49 12.75 46.30 1.82
4261 5468 5.170748 GGAAATTTCACATGCTTCGGAAAT 58.829 37.500 19.49 0.00 40.59 2.17
4262 5469 4.555262 GGAAATTTCACATGCTTCGGAAA 58.445 39.130 19.49 0.00 34.17 3.13
4263 5470 3.365868 CGGAAATTTCACATGCTTCGGAA 60.366 43.478 19.49 0.00 0.00 4.30
4264 5471 2.161410 CGGAAATTTCACATGCTTCGGA 59.839 45.455 19.49 0.00 0.00 4.55
4265 5472 2.161410 TCGGAAATTTCACATGCTTCGG 59.839 45.455 19.49 0.00 0.00 4.30
4266 5473 3.469899 TCGGAAATTTCACATGCTTCG 57.530 42.857 19.49 10.91 0.00 3.79
4267 5474 6.710692 AATTTCGGAAATTTCACATGCTTC 57.289 33.333 20.12 0.00 37.84 3.86
4285 5492 4.382754 GCCCATCGAAATATGCGAAATTTC 59.617 41.667 8.20 8.20 41.52 2.17
4286 5493 4.037923 AGCCCATCGAAATATGCGAAATTT 59.962 37.500 5.22 0.00 41.52 1.82
4287 5494 3.569701 AGCCCATCGAAATATGCGAAATT 59.430 39.130 5.22 0.00 41.52 1.82
4288 5495 3.149196 AGCCCATCGAAATATGCGAAAT 58.851 40.909 5.22 0.00 41.52 2.17
4289 5496 2.548057 GAGCCCATCGAAATATGCGAAA 59.452 45.455 5.22 0.00 41.52 3.46
4290 5497 2.143122 GAGCCCATCGAAATATGCGAA 58.857 47.619 5.22 0.00 41.52 4.70
4291 5498 1.344438 AGAGCCCATCGAAATATGCGA 59.656 47.619 3.77 3.77 42.48 5.10
4292 5499 1.462283 CAGAGCCCATCGAAATATGCG 59.538 52.381 0.00 0.00 0.00 4.73
4293 5500 2.771089 TCAGAGCCCATCGAAATATGC 58.229 47.619 0.00 0.00 0.00 3.14
4294 5501 5.954296 ATTTCAGAGCCCATCGAAATATG 57.046 39.130 0.00 0.00 38.35 1.78
4295 5502 8.641498 AATAATTTCAGAGCCCATCGAAATAT 57.359 30.769 0.00 0.00 38.76 1.28
4296 5503 8.463930 AAATAATTTCAGAGCCCATCGAAATA 57.536 30.769 0.00 0.00 38.76 1.40
4297 5504 6.966534 AATAATTTCAGAGCCCATCGAAAT 57.033 33.333 0.00 0.00 40.06 2.17
4298 5505 6.773976 AAATAATTTCAGAGCCCATCGAAA 57.226 33.333 0.00 0.00 36.01 3.46
4299 5506 6.152661 ACAAAATAATTTCAGAGCCCATCGAA 59.847 34.615 0.00 0.00 0.00 3.71
4300 5507 5.652014 ACAAAATAATTTCAGAGCCCATCGA 59.348 36.000 0.00 0.00 0.00 3.59
4301 5508 5.894807 ACAAAATAATTTCAGAGCCCATCG 58.105 37.500 0.00 0.00 0.00 3.84
4302 5509 8.552083 AAAACAAAATAATTTCAGAGCCCATC 57.448 30.769 0.00 0.00 0.00 3.51
4303 5510 7.331687 CGAAAACAAAATAATTTCAGAGCCCAT 59.668 33.333 0.00 0.00 33.68 4.00
4304 5511 6.644592 CGAAAACAAAATAATTTCAGAGCCCA 59.355 34.615 0.00 0.00 33.68 5.36
4305 5512 6.866248 TCGAAAACAAAATAATTTCAGAGCCC 59.134 34.615 0.00 0.00 33.68 5.19
4306 5513 7.867445 TCGAAAACAAAATAATTTCAGAGCC 57.133 32.000 0.00 0.00 33.68 4.70
4320 5527 9.716507 CTCAACTCTCTAAATTTCGAAAACAAA 57.283 29.630 15.66 0.30 0.00 2.83
4321 5528 8.342634 CCTCAACTCTCTAAATTTCGAAAACAA 58.657 33.333 15.66 2.11 0.00 2.83
4322 5529 7.713507 TCCTCAACTCTCTAAATTTCGAAAACA 59.286 33.333 15.66 2.11 0.00 2.83
4323 5530 8.010540 GTCCTCAACTCTCTAAATTTCGAAAAC 58.989 37.037 15.66 0.00 0.00 2.43
4324 5531 7.095774 CGTCCTCAACTCTCTAAATTTCGAAAA 60.096 37.037 15.66 0.00 0.00 2.29
4325 5532 6.365247 CGTCCTCAACTCTCTAAATTTCGAAA 59.635 38.462 13.91 13.91 0.00 3.46
4326 5533 5.862323 CGTCCTCAACTCTCTAAATTTCGAA 59.138 40.000 0.00 0.00 0.00 3.71
4327 5534 5.182570 TCGTCCTCAACTCTCTAAATTTCGA 59.817 40.000 0.00 0.00 0.00 3.71
4328 5535 5.286558 GTCGTCCTCAACTCTCTAAATTTCG 59.713 44.000 0.00 0.00 0.00 3.46
4329 5536 5.286558 CGTCGTCCTCAACTCTCTAAATTTC 59.713 44.000 0.00 0.00 0.00 2.17
4330 5537 5.162075 CGTCGTCCTCAACTCTCTAAATTT 58.838 41.667 0.00 0.00 0.00 1.82
4331 5538 4.380655 CCGTCGTCCTCAACTCTCTAAATT 60.381 45.833 0.00 0.00 0.00 1.82
4332 5539 3.128938 CCGTCGTCCTCAACTCTCTAAAT 59.871 47.826 0.00 0.00 0.00 1.40
4333 5540 2.486982 CCGTCGTCCTCAACTCTCTAAA 59.513 50.000 0.00 0.00 0.00 1.85
4334 5541 2.082231 CCGTCGTCCTCAACTCTCTAA 58.918 52.381 0.00 0.00 0.00 2.10
4335 5542 1.277273 TCCGTCGTCCTCAACTCTCTA 59.723 52.381 0.00 0.00 0.00 2.43
4336 5543 0.036448 TCCGTCGTCCTCAACTCTCT 59.964 55.000 0.00 0.00 0.00 3.10
4337 5544 1.096416 ATCCGTCGTCCTCAACTCTC 58.904 55.000 0.00 0.00 0.00 3.20
4338 5545 2.414994 TATCCGTCGTCCTCAACTCT 57.585 50.000 0.00 0.00 0.00 3.24
4339 5546 3.712091 ATTATCCGTCGTCCTCAACTC 57.288 47.619 0.00 0.00 0.00 3.01
4340 5547 3.568853 CCTATTATCCGTCGTCCTCAACT 59.431 47.826 0.00 0.00 0.00 3.16
4341 5548 3.567164 TCCTATTATCCGTCGTCCTCAAC 59.433 47.826 0.00 0.00 0.00 3.18
4342 5549 3.824133 TCCTATTATCCGTCGTCCTCAA 58.176 45.455 0.00 0.00 0.00 3.02
4383 5590 2.843730 TGGATGGAAGGCTAAACTGCTA 59.156 45.455 0.00 0.00 0.00 3.49
4389 5596 6.770286 ATATCTCTTGGATGGAAGGCTAAA 57.230 37.500 0.00 0.00 35.98 1.85
4390 5597 6.770286 AATATCTCTTGGATGGAAGGCTAA 57.230 37.500 0.00 0.00 35.98 3.09
4391 5598 6.537355 CAAATATCTCTTGGATGGAAGGCTA 58.463 40.000 0.00 0.00 35.98 3.93
4392 5599 5.383476 CAAATATCTCTTGGATGGAAGGCT 58.617 41.667 0.00 0.00 35.98 4.58
4393 5600 4.022503 GCAAATATCTCTTGGATGGAAGGC 60.023 45.833 0.00 0.00 35.98 4.35
4394 5601 4.214971 CGCAAATATCTCTTGGATGGAAGG 59.785 45.833 0.00 0.00 35.98 3.46
4395 5602 5.049818 GTCGCAAATATCTCTTGGATGGAAG 60.050 44.000 0.00 0.00 35.98 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.